%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  GapAnalysis
%global packver   2.0.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.0.0
Release:          1%{?dist}%{?buildtag}
Summary:          Conservation Indicators Using Spatial Information

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.3.0
Requires:         R-core >= 4.3.0
BuildArch:        noarch
BuildRequires:    R-CRAN-dataverse 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-leaflet 
BuildRequires:    R-CRAN-terra 
Requires:         R-CRAN-dataverse 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-leaflet 
Requires:         R-CRAN-terra 

%description
Supports the assessment of the degree of conservation of taxa in
conservation systems, both in ex situ (in genebanks, botanical gardens,
and other repositories), and in situ (in protected natural areas). Methods
are described in Carver et al. (2021) <doi:10.1111/ecog.05430>, building
on Khoury et al. (2020) <doi:10.1073/pnas.2007029117>, Khoury et al.
(2019) <doi:10.1016/j.ecolind.2018.11.016>, Khoury et al. (2019)
<doi:10.1111/DDI.13008>, Castaneda-Alvarez et al. (2016)
<doi:10.1038/nplants.2016.22>, and Ramirez-Villegas et al. (2010)
<doi:10.1371/journal.pone.0013497>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}