%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  omophub
%global packver   1.6.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.6.0
Release:          1%{?dist}%{?buildtag}
Summary:          R Client for the 'OMOPHub' Medical Vocabulary API

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1
Requires:         R-core >= 4.1
BuildArch:        noarch
BuildRequires:    R-CRAN-httr2 >= 1.0.0
BuildRequires:    R-CRAN-rlang >= 1.0.0
BuildRequires:    R-CRAN-R6 
BuildRequires:    R-CRAN-cli 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-glue 
BuildRequires:    R-CRAN-checkmate 
Requires:         R-CRAN-httr2 >= 1.0.0
Requires:         R-CRAN-rlang >= 1.0.0
Requires:         R-CRAN-R6 
Requires:         R-CRAN-cli 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-glue 
Requires:         R-CRAN-checkmate 

%description
Provides an R interface to the 'OMOPHub' API for accessing 'OHDSI ATHENA'
standardized medical vocabularies. Supports concept search, semantic
search using neural embeddings, concept similarity, vocabulary
exploration, hierarchy navigation, relationship queries, concept mappings,
and FHIR-to-OMOP concept resolution with automatic pagination.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}