%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  BioIndex
%global packver   0.6.4
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.6.4
Release:          1%{?dist}%{?buildtag}
Summary:          Biological Indicators and Indices for MEDITS Survey Data

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1
Requires:         R-core >= 4.1
BuildArch:        noarch
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-gridExtra 
BuildRequires:    R-CRAN-hms 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-marmap 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-mgcv 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-CRAN-shiny 
BuildRequires:    R-CRAN-shinyjs 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-terra 
BuildRequires:    R-CRAN-tidyterra 
BuildRequires:    R-CRAN-zip 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-gridExtra 
Requires:         R-CRAN-hms 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-marmap 
Requires:         R-methods 
Requires:         R-CRAN-mgcv 
Requires:         R-CRAN-reshape2 
Requires:         R-CRAN-shiny 
Requires:         R-CRAN-shinyjs 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-terra 
Requires:         R-CRAN-tidyterra 
Requires:         R-CRAN-zip 

%description
Supports the standardized analysis of Mediterranean International Bottom
Trawl Survey (MEDITS) data and the calculation of biological indicators
for selected species and population components. The package provides
functions to estimate abundance and biomass indices, analyse size
structure and length frequency distributions, derive sex ratio and
maturity related metrics, explore spatial patterns, and assess temporal
trends across surveys. Developed for integration within the Regional
Database for Fisheries (RDBFIS) framework, it is intended to work on
quality checked input data and to produce reproducible outputs that can
support monitoring, comparative analyses among Geographical Sub-Areas
(GSAs) and countries, and fishery management.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}