%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  chromConverter
%global packver   0.9.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.9.0
Release:          1%{?dist}%{?buildtag}
Summary:          Chromatographic File Converter

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch
BuildRequires:    R-CRAN-reticulate >= 1.41.0
BuildRequires:    R-CRAN-bitops 
BuildRequires:    R-CRAN-fs 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-readxl 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-RaMS 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-xml2 
BuildRequires:    R-CRAN-bit64 
BuildRequires:    R-CRAN-data.table 
BuildRequires:    R-CRAN-base64enc 
BuildRequires:    R-CRAN-jsonlite 
BuildRequires:    R-CRAN-digest 
Requires:         R-CRAN-reticulate >= 1.41.0
Requires:         R-CRAN-bitops 
Requires:         R-CRAN-fs 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-readxl 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-tidyr 
Requires:         R-utils 
Requires:         R-CRAN-RaMS 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-xml2 
Requires:         R-CRAN-bit64 
Requires:         R-CRAN-data.table 
Requires:         R-CRAN-base64enc 
Requires:         R-CRAN-jsonlite 
Requires:         R-CRAN-digest 

%description
Reads chromatograms from binary formats into R objects. Currently supports
conversion of 'Agilent ChemStation', 'Agilent MassHunter', 'Agilent
OpenLab', 'Shimadzu LabSolutions', 'ThermoRaw', 'Varian Workstation', and
'Waters Empower' files as well as various other formats.  In addition to
its internal parsers, chromConverter contains bindings to parsers in
external libraries, such as 'Aston' <https://github.com/bovee/aston>,
'Entab' <https://github.com/bovee/entab>, 'rainbow'
<https://rainbow-api.readthedocs.io/>, and 'ThermoRawFileParser'
<https://github.com/compomics/ThermoRawFileParser>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}