%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  FESta
%global packver   1.0.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.2
Release:          1%{?dist}%{?buildtag}
Summary:          Fishing Effort Standardization

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch
BuildRequires:    R-CRAN-bestNormalize 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-gridExtra 
BuildRequires:    R-CRAN-lme4 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-CRAN-mgcv 
BuildRequires:    R-CRAN-patchwork 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-scales 
BuildRequires:    R-CRAN-statmod 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-tweedie 
Requires:         R-CRAN-bestNormalize 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-gridExtra 
Requires:         R-CRAN-lme4 
Requires:         R-CRAN-MASS 
Requires:         R-CRAN-mgcv 
Requires:         R-CRAN-patchwork 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-scales 
Requires:         R-CRAN-statmod 
Requires:         R-stats 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-tweedie 

%description
Marine fisheries governance and management rely heavily on reliable
indicators of stock abundance and fishing pressure to ensure the
sustainable utilization of marine resources. Catch Per Unit Effort (CPUE)
is widely used as an index of relative abundance, but direct comparison of
catch rates is often affected by differences in fishing effort, vessel
characteristics, gear efficiency, and operational practices. The FESta
package provides methods for fishing effort and CPUE standardization,
including vessel-based, gear-based, relative effort, derived effort,
generalized linear models, generalized additive models, generalized linear
mixed models, ordered quantile transformation models, and multi-gear
standardization techniques for fisheries stock assessment and monitoring.
To cite our package run this command, citation("FESta").

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}