%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  brapiR2
%global packver   0.2.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.2.0
Release:          1%{?dist}%{?buildtag}
Summary:          A Tidyverse-Native Client for the 'BrAPI' v2 (Breeding API) Specification

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch
BuildRequires:    R-CRAN-cli >= 3.6.0
BuildRequires:    R-CRAN-tibble >= 3.2.0
BuildRequires:    R-CRAN-jsonlite >= 1.8.0
BuildRequires:    R-CRAN-glue >= 1.6.0
BuildRequires:    R-CRAN-tidyr >= 1.3.0
BuildRequires:    R-CRAN-tidyselect >= 1.2.0
BuildRequires:    R-CRAN-dplyr >= 1.1.0
BuildRequires:    R-CRAN-rlang >= 1.1.0
BuildRequires:    R-CRAN-httr2 >= 1.0.0
BuildRequires:    R-CRAN-purrr >= 1.0.0
BuildRequires:    R-stats 
BuildRequires:    R-utils 
Requires:         R-CRAN-cli >= 3.6.0
Requires:         R-CRAN-tibble >= 3.2.0
Requires:         R-CRAN-jsonlite >= 1.8.0
Requires:         R-CRAN-glue >= 1.6.0
Requires:         R-CRAN-tidyr >= 1.3.0
Requires:         R-CRAN-tidyselect >= 1.2.0
Requires:         R-CRAN-dplyr >= 1.1.0
Requires:         R-CRAN-rlang >= 1.1.0
Requires:         R-CRAN-httr2 >= 1.0.0
Requires:         R-CRAN-purrr >= 1.0.0
Requires:         R-stats 
Requires:         R-utils 

%description
Provides pipe-friendly, stateless read access to the Breeding API
('BrAPI') v2.1 specification, an open community standard for plant
breeding data interchange maintained by the BrAPI project
<https://brapi.org>. Wraps 32 of the 37 'BrAPI' v2.1 entities across all
four modules, Core, Germplasm, Phenotyping, and Genotyping, covering 49 of
the specification's 138 retrieval ('GET' and search) endpoints and
returning tidy tibbles ready for analysis. Write and update endpoints are
out of scope by design. Features include automatic pagination, async
search handling, response caching, parallel batch fetching, and
convenience functions for genomic selection workflows (e.g. dosage matrix
extraction). Designed for plant breeders and bioinformaticians who need
programmatic access to plant breeding databases that implement the 'BrAPI'
v2 specification.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}