%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  gson
%global packver   0.2.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.2.2
Release:          1%{?dist}%{?buildtag}
Summary:          Base Class and Methods for 'gson' Format

License:          Artistic-2.0
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-yulab.utils >= 0.0.7
BuildRequires:    R-CRAN-jsonlite 
BuildRequires:    R-methods 
BuildRequires:    R-stats 
BuildRequires:    R-utils 
Requires:         R-CRAN-yulab.utils >= 0.0.7
Requires:         R-CRAN-jsonlite 
Requires:         R-methods 
Requires:         R-stats 
Requires:         R-utils 

%description
Provides a lightweight container and exchange format for gene set
collections. A 'GSON' object stores which genes belong to which gene set,
together with gene set and gene names, the identifier types in use,
species, versions and source metadata. A collection can be built from data
frames, read from and written to the 'gson' JavaScript Object Notation
(JSON) format and the 'GMT' format, subset by gene set, merged across
sources, validated, and resolved to the web addresses of the databases it
comes from, so that a collection gathered by one package can be analysed
by another.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}