%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  AMDconfigurations
%global packver   0.2.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.2.1
Release:          1%{?dist}%{?buildtag}
Summary:          Geometric Analysis of Configurations in High-Dimensional Spaces

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1
Requires:         R-core >= 4.1
BuildArch:        noarch
BuildRequires:    R-CRAN-e1071 >= 1.7.17
BuildRequires:    R-grDevices 
BuildRequires:    R-graphics 
BuildRequires:    R-stats 
BuildRequires:    R-utils 
Requires:         R-CRAN-e1071 >= 1.7.17
Requires:         R-grDevices 
Requires:         R-graphics 
Requires:         R-stats 
Requires:         R-utils 

%description
Computes Average Membership Degree (AMD) from soft-membership matrices and
constructs AMD curves across candidate configuration counts. The current
curve backend uses repeated fuzzy c-means fits while keeping the AMD
definition, membership estimation, curve construction, and final
assignment as separate operations. Fitted memberships, convergence
diagnostics, preprocessing transformations, seeds, row maps, and
process-level reproducibility links are retained. The package reports
numerical curve features but leaves their scientific interpretation to an
explicitly justified analysis. The method was introduced by Mendoza and
Araújo (2022) <doi:10.1111/ecog.06289>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}