%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  spacemodR
%global packver   0.3.5
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.3.5
Release:          1%{?dist}%{?buildtag}
Summary:          Spatial Environmental Risk Assessment Through Food Webs

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildRequires:    R-CRAN-RcppParallel >= 5.0.1
BuildRequires:    R-CRAN-rstantools >= 2.4.0
BuildRequires:    R-CRAN-rstan >= 2.18.1
BuildRequires:    R-CRAN-StanHeaders >= 2.18.0
BuildRequires:    R-CRAN-BH >= 1.66.0
BuildRequires:    R-CRAN-RcppEigen >= 0.3.3.3.0
BuildRequires:    R-CRAN-Rcpp >= 0.12.0
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-httr 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-patchwork 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-sf 
BuildRequires:    R-CRAN-terra 
BuildRequires:    R-tools 
BuildRequires:    R-CRAN-rstantools
Requires:         R-CRAN-rstantools >= 2.4.0
Requires:         R-CRAN-rstan >= 2.18.1
Requires:         R-CRAN-Rcpp >= 0.12.0
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-httr 
Requires:         R-methods 
Requires:         R-CRAN-patchwork 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-sf 
Requires:         R-CRAN-terra 
Requires:         R-tools 
Requires:         R-CRAN-rstantools

%description
A workflow for spatially explicit environmental risk assessment of
contaminated sites: habitat, food web, dispersal, exposure and risk.
Starting from a raster of soil contamination, the package builds habitat
layers for a set of species, organises them in a directed acyclic graph
representing a food web, and propagates the flow of elements (e.g., food,
energy, contaminants) along its links. It also provides soil interpolation
by kriging, dispersal by kernel convolution or by circuit theory (through
the optional 'Julia' package 'Omniscape'), land cover retrieval for France
('OCS-GE') and Europe ('EUNIS'), and Bayesian calibration of transfer
models with 'Stan'.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}