%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  puremoe
%global packver   1.1.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.1
Release:          1%{?dist}%{?buildtag}
Summary:          Integrated Retrieval and Analysis of 'PubMed', 'NIH', and 'NLM' Literature Data

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5
Requires:         R-core >= 3.5
BuildArch:        noarch
BuildRequires:    R-CRAN-rentrez 
BuildRequires:    R-CRAN-textshape 
BuildRequires:    R-CRAN-xml2 
BuildRequires:    R-CRAN-data.table 
BuildRequires:    R-CRAN-httr 
BuildRequires:    R-CRAN-pbapply 
BuildRequires:    R-CRAN-jsonlite 
BuildRequires:    R-CRAN-rappdirs 
BuildRequires:    R-CRAN-textpress 
BuildRequires:    R-parallel 
BuildRequires:    R-tools 
BuildRequires:    R-utils 
Requires:         R-CRAN-rentrez 
Requires:         R-CRAN-textshape 
Requires:         R-CRAN-xml2 
Requires:         R-CRAN-data.table 
Requires:         R-CRAN-httr 
Requires:         R-CRAN-pbapply 
Requires:         R-CRAN-jsonlite 
Requires:         R-CRAN-rappdirs 
Requires:         R-CRAN-textpress 
Requires:         R-parallel 
Requires:         R-tools 
Requires:         R-utils 

%description
Retrieve and analyze biomedical literature from 'PubMed' and the wider
'NIH'/'NLM' data stack through a single, PMID-centered interface. A PubMed
search resolves to a set of PMIDs, which can be used to retrieve article
metadata and abstracts, author affiliations, 'iCite' citation data and
links, 'PubTator3' entity and relation annotations, and open-access full
text from 'PMC'. A local analysis layer operates on the retrieved tables,
supporting corpus expansion through citation links, citation network
construction, sentence-level entity co-occurrence, inspection of relation
evidence, and 'MeSH' descriptor keyness.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}