%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  ct
%global packver   0.5.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.5.0
Release:          1%{?dist}%{?buildtag}
Summary:          Camera Trap Data Management and Multi-Method Ecological Analysis

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5
Requires:         R-core >= 3.5
BuildRequires:    R-CRAN-cli >= 3.6.3
BuildRequires:    R-CRAN-ggplot2 >= 3.5.2
BuildRequires:    R-CRAN-magrittr >= 2.0.3
BuildRequires:    R-CRAN-Distance >= 2.0.0
BuildRequires:    R-CRAN-activity >= 1.3.4
BuildRequires:    R-CRAN-tidyr >= 1.3.1
BuildRequires:    R-CRAN-rlang >= 1.1.5
BuildRequires:    R-CRAN-dplyr >= 1.1.4
BuildRequires:    R-CRAN-Rcpp >= 1.0.8
BuildRequires:    R-CRAN-overlap >= 0.3.9
BuildRequires:    R-CRAN-sbd >= 0.1.0
BuildRequires:    R-CRAN-camtrapdp 
BuildRequires:    R-CRAN-lubridate 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-nloptr 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyselect 
Requires:         R-CRAN-cli >= 3.6.3
Requires:         R-CRAN-ggplot2 >= 3.5.2
Requires:         R-CRAN-magrittr >= 2.0.3
Requires:         R-CRAN-Distance >= 2.0.0
Requires:         R-CRAN-activity >= 1.3.4
Requires:         R-CRAN-tidyr >= 1.3.1
Requires:         R-CRAN-rlang >= 1.1.5
Requires:         R-CRAN-dplyr >= 1.1.4
Requires:         R-CRAN-Rcpp >= 1.0.8
Requires:         R-CRAN-overlap >= 0.3.9
Requires:         R-CRAN-sbd >= 0.1.0
Requires:         R-CRAN-camtrapdp 
Requires:         R-CRAN-lubridate 
Requires:         R-methods 
Requires:         R-CRAN-nloptr 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyselect 

%description
Tools for the complete camera trap data workflow in wildlife monitoring
and ecological research. Reads and edits media metadata, filters
independent detections, and standardises records for analysis. Measures
diel activity and overlap (Ridout and Linkie (2009)
<doi:10.1198/jabes.2009.08038>), directed short-term association between
species with an encounter-response model (Hawkes (1971)
<doi:10.1093/biomet/58.1.83>), seasonal shifts in activity, spatial
coverage of detections, and species diversity. Estimates density or
abundance of unmarked populations with several methods, including the
random encounter model, camera trap distance sampling, time-to-event,
space-to-event, instantaneous sampling, and the random encounter and
staying-time model (see Rowcliffe et al. (2008)
<doi:10.1111/j.1365-2664.2008.01473.x>, Howe et al. (2017)
<doi:10.1111/2041-210X.12790>, Moeller et al. (2018)
<doi:10.1002/ecs2.2331>, and Nakashima et al. (2018)
<doi:10.1111/1365-2664.13059>).

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}