%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  gp3sequences
%global packver   0.3.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.3.2
Release:          1%{?dist}%{?buildtag}
Summary:          Transparent Analysis of Ordered Categorical Sequences

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-graphics 
BuildRequires:    R-methods 
BuildRequires:    R-stats 
BuildRequires:    R-utils 
Requires:         R-graphics 
Requires:         R-methods 
Requires:         R-stats 
Requires:         R-utils 

%description
Provides transparent, reproducible, and auditable tools for validating,
preparing, encoding, summarising, comparing, modelling, and diagnosing
ordered categorical sequence data. Supports explicit preprocessing
policies, contiguous motifs and bounded subsequences, consensus and group
comparisons, edit and transition distances, clustering and stability
diagnostics, transition networks, higher-order models, categorical,
mixture, multichannel, and covariate hidden Markov models, longitudinal
panel workflows, time-varying models, design-aware inference, analysis
contracts and provenance audits, and guarded adapters to specialist
sequence-analysis packages.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}