%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  cdiscdata
%global packver   0.2.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.2.0
Release:          1%{?dist}%{?buildtag}
Summary:          Versioned CDISC Standards Reference Data

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch

%description
Provides versioned reference data for the standards of the Clinical Data
Interchange Standards Consortium (CDISC)
<https://www.cdisc.org/standards>: the CDISC Controlled Terminology (CT)
for the Study Data Tabulation Model (SDTM) and the Analysis Data Model
(ADaM); variable metadata for the SDTM model and for the families of the
SDTM Implementation Guide (SDTMIG), the Standard for Exchange of
Nonclinical Data Implementation Guide (SENDIG), and the ADaM
Implementation Guide (ADaMIG); the Clinical Data Acquisition Standards
Harmonization (CDASH) model and implementation guide; the Questionnaires,
Ratings, and Scales (QRS) supplements; and the Define-XML schemas, written
in the Extensible Markup Language (XML) Schema Definition (XSD) language,
with Extensible Stylesheet Language Transformations (XSLT) stylesheets for
them. A validity-date design stores every historical CT version compactly,
without duplicating rows. Intended as a shared data dependency for
pharmaverse-aligned packages <https://pharmaverse.org>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}