Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c14e' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5185129 --chroot fedora-rawhide-i386 --detached
Version: 0.62
PID: 7731
Logging PID: 7732
Task:
{'appstream': False,
'background': True,
'build_id': 5185129,
'buildroot_pkgs': [],
'chroot': 'fedora-rawhide-i386',
'enable_net': False,
'fedora_review': False,
'git_hash': 'c12c4f6b33fc7774fb77429b7f531d3d96a8d16c',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test.checker/hmmer',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'hmmer',
'package_version': '3.3.2-2',
'project_dirname': 'gcc-13-test.checker',
'project_name': 'gcc-13-test.checker',
'project_owner': 'jakub',
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jakub/gcc-13-test.checker/fedora-rawhide-i386/',
'id': 'copr_base',
'name': 'Copr repository'},
{'baseurl': 'https://jakub.fedorapeople.org/fedora-gcc13-$arch/',
'id': 'https_jakub_fedorapeople_org_fedora_gcc13_arch',
'name': 'Additional repo https_jakub_fedorapeople_org_fedora_gcc13_arch'}],
'sandbox': 'jakub/gcc-13-test.checker--jakub',
'source_json': {},
'source_type': None,
'submitter': 'jakub',
'tags': [],
'task_id': '5185129-fedora-rawhide-i386',
'timeout': 115200,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test.checker/hmmer /var/lib/copr-rpmbuild/workspace/workdir-hb2omht5/hmmer --depth 500 --no-single-branch --recursive
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test.checker/hmmer', '/var/lib/copr-rpmbuild/workspace/workdir-hb2omht5/hmmer', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-hb2omht5/hmmer'...
Running: git checkout c12c4f6b33fc7774fb77429b7f531d3d96a8d16c
cmd: ['git', 'checkout', 'c12c4f6b33fc7774fb77429b7f531d3d96a8d16c']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-hb2omht5/hmmer
rc: 0
stdout:
stderr: Note: switching to 'c12c4f6b33fc7774fb77429b7f531d3d96a8d16c'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at c12c4f6 automatic import of hmmer
Running: copr-distgit-client sources
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-hb2omht5/hmmer
rc: 0
stdout:
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading hmmer-3.3.2.tar.gz
INFO: Calling: curl -H Pragma: -o hmmer-3.3.2.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jakub/gcc-13-test.checker/hmmer/hmmer-3.3.2.tar.gz/md5/ea03d88b4e8228a1dc6d84d56af27195/hmmer-3.3.2.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 17.3M 100 17.3M 0 0 24.5M 0 --:--:-- --:--:-- --:--:-- 24.5M
INFO: Reading stdout from command: md5sum hmmer-3.3.2.tar.gz
Running (timeout=115200): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-hb2omht5/hmmer/hmmer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-hb2omht5/hmmer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1672268095.305560 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-hb2omht5/hmmer/hmmer.spec) Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1672268095.305560/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start(bootstrap): dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity
This system is not registered with an entitlement server. You can use subscription-manager to register.
Copr repository 5.9 MB/s | 1.3 MB 00:00
Additional repo https_jakub_fedorapeople_org_fe 175 kB/s | 86 kB 00:00
local 16 MB/s | 60 MB 00:03
Dependencies resolved.
=========================================================================================================================
Package Arch Version Repository Size
=========================================================================================================================
Installing:
dnf noarch 4.14.0-1.fc38 local 469 k
dnf-plugins-core noarch 4.3.1-1.fc38 local 34 k
Installing dependencies:
alternatives i686 1.21-1.fc38 local 38 k
audit-libs i686 3.0.9-2.fc38 local 122 k
basesystem noarch 11-14.fc37 local 7.0 k
bash i686 5.2.9-3.fc38 local 1.8 M
bzip2-libs i686 1.0.8-12.fc37 local 41 k
ca-certificates noarch 2022.2.54-5.fc37 local 829 k
coreutils i686 9.1-8.fc38 local 1.1 M
coreutils-common i686 9.1-8.fc38 local 2.0 M
crypto-policies noarch 20221215-1.gita4c31a3.fc38 local 63 k
curl i686 7.87.0-1.fc38 local 347 k
cyrus-sasl-lib i686 2.1.28-8.fc38 local 857 k
dbus-libs i686 1:1.14.4-1.fc38 local 167 k
dnf-data noarch 4.14.0-1.fc38 local 43 k
elfutils-default-yama-scope noarch 0.188-3.fc38 local 15 k
elfutils-libelf i686 0.188-3.fc38 local 203 k
elfutils-libs i686 0.188-3.fc38 local 286 k
expat i686 2.5.0-1.fc38 local 115 k
fedora-gpg-keys noarch 38-0.3 local 115 k
fedora-release noarch 38-0.6 local 11 k
fedora-release-common noarch 38-0.6 local 21 k
fedora-release-identity-basic noarch 38-0.6 local 11 k
fedora-repos noarch 38-0.3 local 10 k
fedora-repos-rawhide noarch 38-0.3 local 9.7 k
file-libs i686 5.42-4.fc37 local 684 k
filesystem i686 3.18-2.fc37 local 1.1 M
findutils i686 1:4.9.0-2.fc37 local 492 k
gawk i686 5.1.1-4.fc37 local 1.0 M
gdbm-libs i686 1:1.23-2.fc37 local 60 k
glib2 i686 2.74.1-2.fc38 local 2.8 M
glibc i686 2.36.9000-19.fc38 local 1.9 M
glibc-common i686 2.36.9000-19.fc38 local 315 k
glibc-minimal-langpack i686 2.36.9000-19.fc38 local 30 k
gmp i686 1:6.2.1-3.fc37 local 305 k
gnupg2 i686 2.3.8-1.fc38 local 2.6 M
gnutls i686 3.7.8-9.fc38 local 1.1 M
gpgme i686 1.17.1-3.fc38 local 218 k
grep i686 3.8-1.fc38 local 289 k
ima-evm-utils i686 1.4-6.fc37 local 63 k
json-c i686 0.16-3.fc38 local 44 k
keyutils-libs i686 1.6.1-5.fc37 local 32 k
krb5-libs i686 1.20.1-3.fc38 local 763 k
libacl i686 2.3.1-4.fc37 local 25 k
libarchive i686 3.6.1-3.fc38 local 443 k
libassuan i686 2.5.5-5.fc37 local 69 k
libattr i686 2.5.1-5.fc37 local 18 k
libb2 i686 0.98.1-7.fc37 local 35 k
libblkid i686 2.38.1-3.fc38 local 116 k
libbrotli i686 1.0.9-9.fc37 local 317 k
libcap i686 2.48-5.fc37 local 68 k
libcap-ng i686 0.8.3-4.fc38 local 33 k
libcom_err i686 1.46.5-3.fc37 local 26 k
libcomps i686 0.1.18-4.fc37 local 84 k
libcurl i686 7.87.0-1.fc38 local 327 k
libdnf i686 0.68.0-1.fc38 local 722 k
libevent i686 2.1.12-7.fc37 local 279 k
libffi i686 3.4.4-1.fc38 local 36 k
libfsverity i686 1.4-8.fc37 local 20 k
libgcc i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 101 k
libgcrypt i686 1.10.1-6.fc38 local 484 k
libgomp i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 304 k
libgpg-error i686 1.46-1.fc38 local 225 k
libidn2 i686 2.3.4-1.fc38 local 154 k
libksba i686 1.6.3-1.fc38 local 161 k
libmodulemd i686 2.14.0-4.fc37 local 241 k
libmount i686 2.38.1-3.fc38 local 141 k
libnghttp2 i686 1.51.0-1.fc38 local 80 k
libnsl2 i686 2.0.0-4.fc37 local 31 k
libpsl i686 0.21.2-1.fc38 local 66 k
librepo i686 1.15.1-1.fc38 local 102 k
libreport-filesystem noarch 2.17.6-1.fc38 local 14 k
libselinux i686 3.5-0.rc1.1.fc38 local 91 k
libsemanage i686 3.5-0.rc1.1.fc38 local 128 k
libsepol i686 3.5-0.rc1.1.fc38 local 336 k
libsigsegv i686 2.14-3.fc37 local 27 k
libsmartcols i686 2.38.1-3.fc38 local 65 k
libsolv i686 0.7.22-3.fc37 local 428 k
libssh i686 0.10.4-2.fc38 local 222 k
libssh-config noarch 0.10.4-2.fc38 local 8.8 k
libstdc++ i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 857 k
libtasn1 i686 4.19.0-1.fc38 local 76 k
libtirpc i686 1.3.3-0.fc37 local 101 k
libunistring i686 1.0-2.fc37 local 551 k
libuuid i686 2.38.1-3.fc38 local 28 k
libverto i686 0.3.2-4.fc37 local 21 k
libxcrypt i686 4.4.33-5.fc38 local 123 k
libxml2 i686 2.10.3-2.fc38 local 745 k
libyaml i686 0.2.5-8.fc37 local 62 k
libzstd i686 1.5.2-3.fc37 local 274 k
lua-libs i686 5.4.4-6.fc38 local 148 k
lz4-libs i686 1.9.3-5.fc37 local 72 k
mpdecimal i686 2.5.1-4.fc37 local 106 k
mpfr i686 4.1.1-2.fc38 local 637 k
ncurses-base noarch 6.3-5.20221126.fc38 local 61 k
ncurses-libs i686 6.3-5.20221126.fc38 local 348 k
nettle i686 3.8-2.fc37 local 430 k
npth i686 1.6-10.fc38 local 24 k
openldap i686 2.6.3-1.fc38 local 273 k
openssl-libs i686 1:3.0.5-6.fc38 local 2.1 M
p11-kit i686 0.24.1-5.fc38 local 335 k
p11-kit-trust i686 0.24.1-5.fc38 local 135 k
pcre2 i686 10.40-1.fc37.1 local 234 k
pcre2-syntax noarch 10.40-1.fc37.1 local 142 k
popt i686 1.19-1.fc38 local 61 k
publicsuffix-list-dafsa noarch 20221208-1.fc38 local 59 k
python-pip-wheel noarch 22.3.1-1.fc38 local 1.4 M
python-setuptools-wheel noarch 65.5.1-1.fc38 local 715 k
python3 i686 3.11.1-1.fc38 local 27 k
python3-dateutil noarch 1:2.8.2-4.fc37 local 350 k
python3-dbus i686 1.3.2-1.fc38 local 150 k
python3-distro noarch 1.8.0-1.fc38 local 45 k
python3-dnf noarch 4.14.0-1.fc38 local 567 k
python3-dnf-plugins-core noarch 4.3.1-1.fc38 local 263 k
python3-gpg i686 1.17.1-3.fc38 local 277 k
python3-hawkey i686 0.68.0-1.fc38 local 111 k
python3-libcomps i686 0.1.18-4.fc37 local 51 k
python3-libdnf i686 0.68.0-1.fc38 local 828 k
python3-libs i686 3.11.1-1.fc38 local 9.3 M
python3-rpm i686 4.18.0-8.fc38 local 95 k
python3-six noarch 1.16.0-8.fc37 local 42 k
readline i686 8.2-2.fc38 local 218 k
rpm i686 4.18.0-8.fc38 local 543 k
rpm-build-libs i686 4.18.0-8.fc38 local 102 k
rpm-libs i686 4.18.0-8.fc38 local 341 k
rpm-sequoia i686 1.2.0-1.fc38 local 924 k
rpm-sign-libs i686 4.18.0-8.fc38 local 27 k
sed i686 4.8-11.fc37 local 300 k
setup noarch 2.14.3-1.fc38 local 146 k
shadow-utils i686 2:4.13-3.fc38 local 1.2 M
sqlite-libs i686 3.40.0-1.fc38 local 705 k
systemd-libs i686 252.4-598.fc38 local 662 k
tpm2-tss i686 4.0.0-0.1.rc2.fc38 local 603 k
tzdata noarch 2022g-1.fc38 local 432 k
xz-libs i686 5.2.9-1.fc38 local 101 k
zchunk-libs i686 1.2.3-1.fc38 local 54 k
zlib i686 1.2.13-1.fc38 local 92 k
Transaction Summary
=========================================================================================================================
Install 137 Packages
Total download size: 57 M
Installed size: 199 M
Downloading Packages:
(1/137): libgcc-13.0.0-0.4.fc38.i686.rpm 569 kB/s | 101 kB 00:00
(2/137): libgomp-13.0.0-0.4.fc38.i686.rpm 1.4 MB/s | 304 kB 00:00
(3/137): alternatives-1.21-1.fc38.i686.rpm 402 kB/s | 38 kB 00:00
(4/137): basesystem-11-14.fc37.noarch.rpm 624 kB/s | 7.0 kB 00:00
(5/137): audit-libs-3.0.9-2.fc38.i686.rpm 1.3 MB/s | 122 kB 00:00
(6/137): libstdc++-13.0.0-0.4.fc38.i686.rpm 2.6 MB/s | 857 kB 00:00
(7/137): bzip2-libs-1.0.8-12.fc37.i686.rpm 2.5 MB/s | 41 kB 00:00
(8/137): bash-5.2.9-3.fc38.i686.rpm 23 MB/s | 1.8 MB 00:00
(9/137): coreutils-9.1-8.fc38.i686.rpm 14 MB/s | 1.1 MB 00:00
(10/137): crypto-policies-20221215-1.gita4c31a3 4.9 MB/s | 63 kB 00:00
(11/137): coreutils-common-9.1-8.fc38.i686.rpm 32 MB/s | 2.0 MB 00:00
(12/137): curl-7.87.0-1.fc38.i686.rpm 23 MB/s | 347 kB 00:00
(13/137): dbus-libs-1.14.4-1.fc38.i686.rpm 6.5 MB/s | 167 kB 00:00
(14/137): cyrus-sasl-lib-2.1.28-8.fc38.i686.rpm 23 MB/s | 857 kB 00:00
(15/137): dnf-4.14.0-1.fc38.noarch.rpm 29 MB/s | 469 kB 00:00
(16/137): dnf-data-4.14.0-1.fc38.noarch.rpm 3.7 MB/s | 43 kB 00:00
(17/137): dnf-plugins-core-4.3.1-1.fc38.noarch. 2.9 MB/s | 34 kB 00:00
(18/137): elfutils-default-yama-scope-0.188-3.f 1.4 MB/s | 15 kB 00:00
(19/137): elfutils-libelf-0.188-3.fc38.i686.rpm 13 MB/s | 203 kB 00:00
(20/137): elfutils-libs-0.188-3.fc38.i686.rpm 18 MB/s | 286 kB 00:00
(21/137): expat-2.5.0-1.fc38.i686.rpm 9.0 MB/s | 115 kB 00:00
(22/137): fedora-gpg-keys-38-0.3.noarch.rpm 8.0 MB/s | 115 kB 00:00
(23/137): fedora-release-38-0.6.noarch.rpm 730 kB/s | 11 kB 00:00
(24/137): fedora-release-common-38-0.6.noarch.r 1.7 MB/s | 21 kB 00:00
(25/137): fedora-release-identity-basic-38-0.6. 1.0 MB/s | 11 kB 00:00
(26/137): fedora-repos-38-0.3.noarch.rpm 935 kB/s | 10 kB 00:00
(27/137): fedora-repos-rawhide-38-0.3.noarch.rp 897 kB/s | 9.7 kB 00:00
(28/137): file-libs-5.42-4.fc37.i686.rpm 17 MB/s | 684 kB 00:00
(29/137): filesystem-3.18-2.fc37.i686.rpm 24 MB/s | 1.1 MB 00:00
(30/137): findutils-4.9.0-2.fc37.i686.rpm 21 MB/s | 492 kB 00:00
(31/137): gdbm-libs-1.23-2.fc37.i686.rpm 3.4 MB/s | 60 kB 00:00
(32/137): gawk-5.1.1-4.fc37.i686.rpm 27 MB/s | 1.0 MB 00:00
(33/137): glibc-2.36.9000-19.fc38.i686.rpm 28 MB/s | 1.9 MB 00:00
(34/137): glib2-2.74.1-2.fc38.i686.rpm 33 MB/s | 2.8 MB 00:00
(35/137): glibc-common-2.36.9000-19.fc38.i686.r 21 MB/s | 315 kB 00:00
(36/137): glibc-minimal-langpack-2.36.9000-19.f 2.5 MB/s | 30 kB 00:00
(37/137): gmp-6.2.1-3.fc37.i686.rpm 20 MB/s | 305 kB 00:00
(38/137): ca-certificates-2022.2.54-5.fc37.noar 1.8 MB/s | 829 kB 00:00
(39/137): gnutls-3.7.8-9.fc38.i686.rpm 20 MB/s | 1.1 MB 00:00
(40/137): grep-3.8-1.fc38.i686.rpm 14 MB/s | 289 kB 00:00
(41/137): gnupg2-2.3.8-1.fc38.i686.rpm 29 MB/s | 2.6 MB 00:00
(42/137): ima-evm-utils-1.4-6.fc37.i686.rpm 5.3 MB/s | 63 kB 00:00
(43/137): json-c-0.16-3.fc38.i686.rpm 3.8 MB/s | 44 kB 00:00
(44/137): gpgme-1.17.1-3.fc38.i686.rpm 3.6 MB/s | 218 kB 00:00
(45/137): keyutils-libs-1.6.1-5.fc37.i686.rpm 2.8 MB/s | 32 kB 00:00
(46/137): libacl-2.3.1-4.fc37.i686.rpm 2.2 MB/s | 25 kB 00:00
(47/137): krb5-libs-1.20.1-3.fc38.i686.rpm 22 MB/s | 763 kB 00:00
(48/137): libarchive-3.6.1-3.fc38.i686.rpm 16 MB/s | 443 kB 00:00
(49/137): libassuan-2.5.5-5.fc37.i686.rpm 3.0 MB/s | 69 kB 00:00
(50/137): libattr-2.5.1-5.fc37.i686.rpm 1.6 MB/s | 18 kB 00:00
(51/137): libb2-0.98.1-7.fc37.i686.rpm 3.1 MB/s | 35 kB 00:00
(52/137): libcap-2.48-5.fc37.i686.rpm 5.5 MB/s | 68 kB 00:00
(53/137): libbrotli-1.0.9-9.fc37.i686.rpm 13 MB/s | 317 kB 00:00
(54/137): libblkid-2.38.1-3.fc38.i686.rpm 3.8 MB/s | 116 kB 00:00
(55/137): libcap-ng-0.8.3-4.fc38.i686.rpm 2.6 MB/s | 33 kB 00:00
(56/137): libcom_err-1.46.5-3.fc37.i686.rpm 2.2 MB/s | 26 kB 00:00
(57/137): libcurl-7.87.0-1.fc38.i686.rpm 14 MB/s | 327 kB 00:00
(58/137): libcomps-0.1.18-4.fc37.i686.rpm 2.8 MB/s | 84 kB 00:00
(59/137): libffi-3.4.4-1.fc38.i686.rpm 3.0 MB/s | 36 kB 00:00
(60/137): libdnf-0.68.0-1.fc38.i686.rpm 21 MB/s | 722 kB 00:00
(61/137): libevent-2.1.12-7.fc37.i686.rpm 13 MB/s | 279 kB 00:00
(62/137): libfsverity-1.4-8.fc37.i686.rpm 1.8 MB/s | 20 kB 00:00
(63/137): libgpg-error-1.46-1.fc38.i686.rpm 16 MB/s | 225 kB 00:00
(64/137): libgcrypt-1.10.1-6.fc38.i686.rpm 18 MB/s | 484 kB 00:00
(65/137): libksba-1.6.3-1.fc38.i686.rpm 9.2 MB/s | 161 kB 00:00
(66/137): libmount-2.38.1-3.fc38.i686.rpm 10 MB/s | 141 kB 00:00
(67/137): libmodulemd-2.14.0-4.fc37.i686.rpm 12 MB/s | 241 kB 00:00
(68/137): libidn2-2.3.4-1.fc38.i686.rpm 3.6 MB/s | 154 kB 00:00
(69/137): libnghttp2-1.51.0-1.fc38.i686.rpm 6.8 MB/s | 80 kB 00:00
(70/137): libnsl2-2.0.0-4.fc37.i686.rpm 2.7 MB/s | 31 kB 00:00
(71/137): libreport-filesystem-2.17.6-1.fc38.no 1.3 MB/s | 14 kB 00:00
(72/137): librepo-1.15.1-1.fc38.i686.rpm 8.2 MB/s | 102 kB 00:00
(73/137): libpsl-0.21.2-1.fc38.i686.rpm 3.2 MB/s | 66 kB 00:00
(74/137): libselinux-3.5-0.rc1.1.fc38.i686.rpm 7.3 MB/s | 91 kB 00:00
(75/137): libsemanage-3.5-0.rc1.1.fc38.i686.rpm 9.7 MB/s | 128 kB 00:00
(76/137): libsigsegv-2.14-3.fc37.i686.rpm 2.2 MB/s | 27 kB 00:00
(77/137): libsmartcols-2.38.1-3.fc38.i686.rpm 5.4 MB/s | 65 kB 00:00
(78/137): libsolv-0.7.22-3.fc37.i686.rpm 18 MB/s | 428 kB 00:00
(79/137): libssh-0.10.4-2.fc38.i686.rpm 8.9 MB/s | 222 kB 00:00
(80/137): libtasn1-4.19.0-1.fc38.i686.rpm 6.2 MB/s | 76 kB 00:00
(81/137): libssh-config-0.10.4-2.fc38.noarch.rp 505 kB/s | 8.8 kB 00:00
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(90/137): libxml2-2.10.3-2.fc38.i686.rpm 21 MB/s | 745 kB 00:00
(91/137): lz4-libs-1.9.3-5.fc37.i686.rpm 6.0 MB/s | 72 kB 00:00
(92/137): mpdecimal-2.5.1-4.fc37.i686.rpm 8.5 MB/s | 106 kB 00:00
(93/137): lua-libs-5.4.4-6.fc38.i686.rpm 4.9 MB/s | 148 kB 00:00
(94/137): ncurses-base-6.3-5.20221126.fc38.noar 4.2 MB/s | 61 kB 00:00
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(99/137): ncurses-libs-6.3-5.20221126.fc38.i686 5.0 MB/s | 348 kB 00:00
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(105/137): popt-1.19-1.fc38.i686.rpm 3.0 MB/s | 61 kB 00:00
(106/137): publicsuffix-list-dafsa-20221208-1.f 4.9 MB/s | 59 kB 00:00
(107/137): python3-3.11.1-1.fc38.i686.rpm 2.2 MB/s | 27 kB 00:00
(108/137): python3-dateutil-2.8.2-4.fc37.noarch 15 MB/s | 350 kB 00:00
(109/137): python3-dbus-1.3.2-1.fc38.i686.rpm 11 MB/s | 150 kB 00:00
(110/137): python-pip-wheel-22.3.1-1.fc38.noarc 25 MB/s | 1.4 MB 00:00
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(130/137): systemd-libs-252.4-598.fc38.i686.rpm 18 MB/s | 662 kB 00:00
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(137/137): python3-libs-3.11.1-1.fc38.i686.rpm 19 MB/s | 9.3 MB 00:00
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Total 30 MB/s | 57 MB 00:01
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Verifying : libselinux-3.5-0.rc1.1.fc38.i686 74/137
Verifying : libsemanage-3.5-0.rc1.1.fc38.i686 75/137
Verifying : libsepol-3.5-0.rc1.1.fc38.i686 76/137
Verifying : libsigsegv-2.14-3.fc37.i686 77/137
Verifying : libsmartcols-2.38.1-3.fc38.i686 78/137
Verifying : libsolv-0.7.22-3.fc37.i686 79/137
Verifying : libssh-0.10.4-2.fc38.i686 80/137
Verifying : libssh-config-0.10.4-2.fc38.noarch 81/137
Verifying : libtasn1-4.19.0-1.fc38.i686 82/137
Verifying : libtirpc-1.3.3-0.fc37.i686 83/137
Verifying : libunistring-1.0-2.fc37.i686 84/137
Verifying : libuuid-2.38.1-3.fc38.i686 85/137
Verifying : libverto-0.3.2-4.fc37.i686 86/137
Verifying : libxcrypt-4.4.33-5.fc38.i686 87/137
Verifying : libxml2-2.10.3-2.fc38.i686 88/137
Verifying : libyaml-0.2.5-8.fc37.i686 89/137
Verifying : libzstd-1.5.2-3.fc37.i686 90/137
Verifying : lua-libs-5.4.4-6.fc38.i686 91/137
Verifying : lz4-libs-1.9.3-5.fc37.i686 92/137
Verifying : mpdecimal-2.5.1-4.fc37.i686 93/137
Verifying : mpfr-4.1.1-2.fc38.i686 94/137
Verifying : ncurses-base-6.3-5.20221126.fc38.noarch 95/137
Verifying : ncurses-libs-6.3-5.20221126.fc38.i686 96/137
Verifying : nettle-3.8-2.fc37.i686 97/137
Verifying : npth-1.6-10.fc38.i686 98/137
Verifying : openldap-2.6.3-1.fc38.i686 99/137
Verifying : openssl-libs-1:3.0.5-6.fc38.i686 100/137
Verifying : p11-kit-0.24.1-5.fc38.i686 101/137
Verifying : p11-kit-trust-0.24.1-5.fc38.i686 102/137
Verifying : pcre2-10.40-1.fc37.1.i686 103/137
Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 104/137
Verifying : popt-1.19-1.fc38.i686 105/137
Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 106/137
Verifying : python-pip-wheel-22.3.1-1.fc38.noarch 107/137
Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 108/137
Verifying : python3-3.11.1-1.fc38.i686 109/137
Verifying : python3-dateutil-1:2.8.2-4.fc37.noarch 110/137
Verifying : python3-dbus-1.3.2-1.fc38.i686 111/137
Verifying : python3-distro-1.8.0-1.fc38.noarch 112/137
Verifying : python3-dnf-4.14.0-1.fc38.noarch 113/137
Verifying : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 114/137
Verifying : python3-gpg-1.17.1-3.fc38.i686 115/137
Verifying : python3-hawkey-0.68.0-1.fc38.i686 116/137
Verifying : python3-libcomps-0.1.18-4.fc37.i686 117/137
Verifying : python3-libdnf-0.68.0-1.fc38.i686 118/137
Verifying : python3-libs-3.11.1-1.fc38.i686 119/137
Verifying : python3-rpm-4.18.0-8.fc38.i686 120/137
Verifying : python3-six-1.16.0-8.fc37.noarch 121/137
Verifying : readline-8.2-2.fc38.i686 122/137
Verifying : rpm-4.18.0-8.fc38.i686 123/137
Verifying : rpm-build-libs-4.18.0-8.fc38.i686 124/137
Verifying : rpm-libs-4.18.0-8.fc38.i686 125/137
Verifying : rpm-sequoia-1.2.0-1.fc38.i686 126/137
Verifying : rpm-sign-libs-4.18.0-8.fc38.i686 127/137
Verifying : sed-4.8-11.fc37.i686 128/137
Verifying : setup-2.14.3-1.fc38.noarch 129/137
Verifying : shadow-utils-2:4.13-3.fc38.i686 130/137
Verifying : sqlite-libs-3.40.0-1.fc38.i686 131/137
Verifying : systemd-libs-252.4-598.fc38.i686 132/137
Verifying : tpm2-tss-4.0.0-0.1.rc2.fc38.i686 133/137
Verifying : tzdata-2022g-1.fc38.noarch 134/137
Verifying : xz-libs-5.2.9-1.fc38.i686 135/137
Verifying : zchunk-libs-1.2.3-1.fc38.i686 136/137
Verifying : zlib-1.2.13-1.fc38.i686 137/137
Installed products updated.
Installed:
alternatives-1.21-1.fc38.i686
audit-libs-3.0.9-2.fc38.i686
basesystem-11-14.fc37.noarch
bash-5.2.9-3.fc38.i686
bzip2-libs-1.0.8-12.fc37.i686
ca-certificates-2022.2.54-5.fc37.noarch
coreutils-9.1-8.fc38.i686
coreutils-common-9.1-8.fc38.i686
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
curl-7.87.0-1.fc38.i686
cyrus-sasl-lib-2.1.28-8.fc38.i686
dbus-libs-1:1.14.4-1.fc38.i686
dnf-4.14.0-1.fc38.noarch
dnf-data-4.14.0-1.fc38.noarch
dnf-plugins-core-4.3.1-1.fc38.noarch
elfutils-default-yama-scope-0.188-3.fc38.noarch
elfutils-libelf-0.188-3.fc38.i686
elfutils-libs-0.188-3.fc38.i686
expat-2.5.0-1.fc38.i686
fedora-gpg-keys-38-0.3.noarch
fedora-release-38-0.6.noarch
fedora-release-common-38-0.6.noarch
fedora-release-identity-basic-38-0.6.noarch
fedora-repos-38-0.3.noarch
fedora-repos-rawhide-38-0.3.noarch
file-libs-5.42-4.fc37.i686
filesystem-3.18-2.fc37.i686
findutils-1:4.9.0-2.fc37.i686
gawk-5.1.1-4.fc37.i686
gdbm-libs-1:1.23-2.fc37.i686
glib2-2.74.1-2.fc38.i686
glibc-2.36.9000-19.fc38.i686
glibc-common-2.36.9000-19.fc38.i686
glibc-minimal-langpack-2.36.9000-19.fc38.i686
gmp-1:6.2.1-3.fc37.i686
gnupg2-2.3.8-1.fc38.i686
gnutls-3.7.8-9.fc38.i686
gpgme-1.17.1-3.fc38.i686
grep-3.8-1.fc38.i686
ima-evm-utils-1.4-6.fc37.i686
json-c-0.16-3.fc38.i686
keyutils-libs-1.6.1-5.fc37.i686
krb5-libs-1.20.1-3.fc38.i686
libacl-2.3.1-4.fc37.i686
libarchive-3.6.1-3.fc38.i686
libassuan-2.5.5-5.fc37.i686
libattr-2.5.1-5.fc37.i686
libb2-0.98.1-7.fc37.i686
libblkid-2.38.1-3.fc38.i686
libbrotli-1.0.9-9.fc37.i686
libcap-2.48-5.fc37.i686
libcap-ng-0.8.3-4.fc38.i686
libcom_err-1.46.5-3.fc37.i686
libcomps-0.1.18-4.fc37.i686
libcurl-7.87.0-1.fc38.i686
libdnf-0.68.0-1.fc38.i686
libevent-2.1.12-7.fc37.i686
libffi-3.4.4-1.fc38.i686
libfsverity-1.4-8.fc37.i686
libgcc-13.0.0-0.4.fc38.i686
libgcrypt-1.10.1-6.fc38.i686
libgomp-13.0.0-0.4.fc38.i686
libgpg-error-1.46-1.fc38.i686
libidn2-2.3.4-1.fc38.i686
libksba-1.6.3-1.fc38.i686
libmodulemd-2.14.0-4.fc37.i686
libmount-2.38.1-3.fc38.i686
libnghttp2-1.51.0-1.fc38.i686
libnsl2-2.0.0-4.fc37.i686
libpsl-0.21.2-1.fc38.i686
librepo-1.15.1-1.fc38.i686
libreport-filesystem-2.17.6-1.fc38.noarch
libselinux-3.5-0.rc1.1.fc38.i686
libsemanage-3.5-0.rc1.1.fc38.i686
libsepol-3.5-0.rc1.1.fc38.i686
libsigsegv-2.14-3.fc37.i686
libsmartcols-2.38.1-3.fc38.i686
libsolv-0.7.22-3.fc37.i686
libssh-0.10.4-2.fc38.i686
libssh-config-0.10.4-2.fc38.noarch
libstdc++-13.0.0-0.4.fc38.i686
libtasn1-4.19.0-1.fc38.i686
libtirpc-1.3.3-0.fc37.i686
libunistring-1.0-2.fc37.i686
libuuid-2.38.1-3.fc38.i686
libverto-0.3.2-4.fc37.i686
libxcrypt-4.4.33-5.fc38.i686
libxml2-2.10.3-2.fc38.i686
libyaml-0.2.5-8.fc37.i686
libzstd-1.5.2-3.fc37.i686
lua-libs-5.4.4-6.fc38.i686
lz4-libs-1.9.3-5.fc37.i686
mpdecimal-2.5.1-4.fc37.i686
mpfr-4.1.1-2.fc38.i686
ncurses-base-6.3-5.20221126.fc38.noarch
ncurses-libs-6.3-5.20221126.fc38.i686
nettle-3.8-2.fc37.i686
npth-1.6-10.fc38.i686
openldap-2.6.3-1.fc38.i686
openssl-libs-1:3.0.5-6.fc38.i686
p11-kit-0.24.1-5.fc38.i686
p11-kit-trust-0.24.1-5.fc38.i686
pcre2-10.40-1.fc37.1.i686
pcre2-syntax-10.40-1.fc37.1.noarch
popt-1.19-1.fc38.i686
publicsuffix-list-dafsa-20221208-1.fc38.noarch
python-pip-wheel-22.3.1-1.fc38.noarch
python-setuptools-wheel-65.5.1-1.fc38.noarch
python3-3.11.1-1.fc38.i686
python3-dateutil-1:2.8.2-4.fc37.noarch
python3-dbus-1.3.2-1.fc38.i686
python3-distro-1.8.0-1.fc38.noarch
python3-dnf-4.14.0-1.fc38.noarch
python3-dnf-plugins-core-4.3.1-1.fc38.noarch
python3-gpg-1.17.1-3.fc38.i686
python3-hawkey-0.68.0-1.fc38.i686
python3-libcomps-0.1.18-4.fc37.i686
python3-libdnf-0.68.0-1.fc38.i686
python3-libs-3.11.1-1.fc38.i686
python3-rpm-4.18.0-8.fc38.i686
python3-six-1.16.0-8.fc37.noarch
readline-8.2-2.fc38.i686
rpm-4.18.0-8.fc38.i686
rpm-build-libs-4.18.0-8.fc38.i686
rpm-libs-4.18.0-8.fc38.i686
rpm-sequoia-1.2.0-1.fc38.i686
rpm-sign-libs-4.18.0-8.fc38.i686
sed-4.8-11.fc37.i686
setup-2.14.3-1.fc38.noarch
shadow-utils-2:4.13-3.fc38.i686
sqlite-libs-3.40.0-1.fc38.i686
systemd-libs-252.4-598.fc38.i686
tpm2-tss-4.0.0-0.1.rc2.fc38.i686
tzdata-2022g-1.fc38.noarch
xz-libs-5.2.9-1.fc38.i686
zchunk-libs-1.2.3-1.fc38.i686
zlib-1.2.13-1.fc38.i686
Complete!
Finish(bootstrap): dnf install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1672268095.305560/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 11 kB/s | 3.0 kB 00:00
Copr repository 2.4 MB/s | 1.3 MB 00:00
Additional repo https_jakub_fedorapeople_org_fe 10 kB/s | 3.0 kB 00:00
local 14 kB/s | 3.8 kB 00:00
Dependencies resolved.
=========================================================================================================================
Package Arch Version Repository Size
=========================================================================================================================
Installing group/module packages:
bash i686 5.2.9-3.fc38 local 1.8 M
bzip2 i686 1.0.8-12.fc37 local 53 k
coreutils i686 9.1-8.fc38 local 1.1 M
cpio i686 2.13-13.fc38 local 275 k
diffutils i686 3.8-3.fc37 local 375 k
fedora-release noarch 38-0.6 local 11 k
findutils i686 1:4.9.0-2.fc37 local 492 k
gawk i686 5.1.1-4.fc37 local 1.0 M
glibc-minimal-langpack i686 2.36.9000-19.fc38 local 30 k
grep i686 3.8-1.fc38 local 289 k
gzip i686 1.12-2.fc37 local 157 k
info i686 7.0.1-1.fc38 local 183 k
patch i686 2.7.6-17.fc37 local 137 k
redhat-rpm-config noarch 235-1.fc38 local 74 k
rpm-build i686 4.18.0-8.fc38 local 69 k
sed i686 4.8-11.fc37 local 300 k
shadow-utils i686 2:4.13-3.fc38 local 1.2 M
tar i686 2:1.34-5.fc38 local 892 k
unzip i686 6.0-58.fc38 local 177 k
util-linux i686 2.38.1-3.fc38 local 2.3 M
which i686 2.21-36.fc38 local 42 k
xz i686 5.2.9-1.fc38 local 300 k
Installing dependencies:
alternatives i686 1.21-1.fc38 local 38 k
ansible-srpm-macros noarch 1-8.1.fc38 local 8.6 k
audit-libs i686 3.0.9-2.fc38 local 122 k
authselect i686 1.4.2-1.fc38 local 140 k
authselect-libs i686 1.4.2-1.fc38 local 238 k
basesystem noarch 11-14.fc37 local 7.0 k
binutils i686 2.39-6.fc38 local 5.6 M
binutils-gold i686 2.39-6.fc38 local 841 k
bzip2-libs i686 1.0.8-12.fc37 local 41 k
ca-certificates noarch 2022.2.54-5.fc37 local 829 k
coreutils-common i686 9.1-8.fc38 local 2.0 M
cracklib i686 2.9.7-30.fc38 local 81 k
crypto-policies noarch 20221215-1.gita4c31a3.fc38 local 63 k
curl i686 7.87.0-1.fc38 local 347 k
cyrus-sasl-lib i686 2.1.28-8.fc38 local 857 k
debugedit i686 5.0-5.fc37 local 78 k
dwz i686 0.15-1.fc38 local 144 k
ed i686 1.18-2.fc37 local 78 k
efi-srpm-macros noarch 5-6.fc37 local 22 k
elfutils i686 0.188-3.fc38 local 540 k
elfutils-debuginfod-client i686 0.188-3.fc38 local 41 k
elfutils-default-yama-scope noarch 0.188-3.fc38 local 15 k
elfutils-libelf i686 0.188-3.fc38 local 203 k
elfutils-libs i686 0.188-3.fc38 local 286 k
fedora-gpg-keys noarch 38-0.3 local 115 k
fedora-release-common noarch 38-0.6 local 21 k
fedora-release-identity-basic noarch 38-0.6 local 11 k
fedora-repos noarch 38-0.3 local 10 k
fedora-repos-rawhide noarch 38-0.3 local 9.7 k
file i686 5.42-4.fc37 local 49 k
file-libs i686 5.42-4.fc37 local 684 k
filesystem i686 3.18-2.fc37 local 1.1 M
fonts-srpm-macros noarch 1:2.0.5-10.fc38 local 26 k
fpc-srpm-macros noarch 1.3-6.fc37 local 7.7 k
gdb-minimal i686 12.1-10.fc38 local 3.9 M
gdbm-libs i686 1:1.23-2.fc37 local 60 k
ghc-srpm-macros noarch 1.5.0-7.fc37 local 7.8 k
glibc i686 2.36.9000-19.fc38 local 1.9 M
glibc-common i686 2.36.9000-19.fc38 local 315 k
glibc-gconv-extra i686 2.36.9000-19.fc38 local 1.6 M
gmp i686 1:6.2.1-3.fc37 local 305 k
gnat-srpm-macros noarch 4-16.fc37 local 8.3 k
go-srpm-macros noarch 3.2.0-1.fc38 local 27 k
jansson i686 2.13.1-5.fc37 local 46 k
kernel-srpm-macros noarch 1.0-15.fc37 local 9.4 k
keyutils-libs i686 1.6.1-5.fc37 local 32 k
krb5-libs i686 1.20.1-3.fc38 local 763 k
libacl i686 2.3.1-4.fc37 local 25 k
libarchive i686 3.6.1-3.fc38 local 443 k
libattr i686 2.5.1-5.fc37 local 18 k
libblkid i686 2.38.1-3.fc38 local 116 k
libbrotli i686 1.0.9-9.fc37 local 317 k
libcap i686 2.48-5.fc37 local 68 k
libcap-ng i686 0.8.3-4.fc38 local 33 k
libcom_err i686 1.46.5-3.fc37 local 26 k
libcurl i686 7.87.0-1.fc38 local 327 k
libdb i686 5.3.28-54.fc38 local 827 k
libeconf i686 0.4.0-4.fc37 local 29 k
libevent i686 2.1.12-7.fc37 local 279 k
libfdisk i686 2.38.1-3.fc38 local 173 k
libffi i686 3.4.4-1.fc38 local 36 k
libgcc i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 101 k
libgomp i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 304 k
libidn2 i686 2.3.4-1.fc38 local 154 k
libmount i686 2.38.1-3.fc38 local 141 k
libnghttp2 i686 1.51.0-1.fc38 local 80 k
libnsl2 i686 2.0.0-4.fc37 local 31 k
libpkgconf i686 1.8.0-3.fc37 local 38 k
libpsl i686 0.21.2-1.fc38 local 66 k
libpwquality i686 1.4.5-1.fc38 local 108 k
libselinux i686 3.5-0.rc1.1.fc38 local 91 k
libsemanage i686 3.5-0.rc1.1.fc38 local 128 k
libsepol i686 3.5-0.rc1.1.fc38 local 336 k
libsigsegv i686 2.14-3.fc37 local 27 k
libsmartcols i686 2.38.1-3.fc38 local 65 k
libssh i686 0.10.4-2.fc38 local 222 k
libssh-config noarch 0.10.4-2.fc38 local 8.8 k
libstdc++ i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 857 k
libtasn1 i686 4.19.0-1.fc38 local 76 k
libtirpc i686 1.3.3-0.fc37 local 101 k
libunistring i686 1.0-2.fc37 local 551 k
libutempter i686 1.2.1-7.fc37 local 26 k
libuuid i686 2.38.1-3.fc38 local 28 k
libverto i686 0.3.2-4.fc37 local 21 k
libxcrypt i686 4.4.33-5.fc38 local 123 k
libxml2 i686 2.10.3-2.fc38 local 745 k
libzstd i686 1.5.2-3.fc37 local 274 k
lua-libs i686 5.4.4-6.fc38 local 148 k
lua-srpm-macros noarch 1-7.fc37 local 8.8 k
lz4-libs i686 1.9.3-5.fc37 local 72 k
mpfr i686 4.1.1-2.fc38 local 637 k
ncurses-base noarch 6.3-5.20221126.fc38 local 61 k
ncurses-libs i686 6.3-5.20221126.fc38 local 348 k
nettle i686 3.8-2.fc37 local 430 k
nim-srpm-macros noarch 3-7.fc37 local 8.4 k
ocaml-srpm-macros noarch 7-2.fc37 local 13 k
openblas-srpm-macros noarch 2-12.fc37 local 7.5 k
openldap i686 2.6.3-1.fc38 local 273 k
openssl-libs i686 1:3.0.5-6.fc38 local 2.1 M
p11-kit i686 0.24.1-5.fc38 local 335 k
p11-kit-trust i686 0.24.1-5.fc38 local 135 k
package-notes-srpm-macros noarch 0.5-6.fc38 local 11 k
pam i686 1.5.2-15.fc38 local 535 k
pam-libs i686 1.5.2-15.fc38 local 60 k
pcre2 i686 10.40-1.fc37.1 local 234 k
pcre2-syntax noarch 10.40-1.fc37.1 local 142 k
perl-srpm-macros noarch 1-47.fc38 local 8.2 k
pkgconf i686 1.8.0-3.fc37 local 42 k
pkgconf-m4 noarch 1.8.0-3.fc37 local 14 k
pkgconf-pkg-config i686 1.8.0-3.fc37 local 10 k
popt i686 1.19-1.fc38 local 61 k
publicsuffix-list-dafsa noarch 20221208-1.fc38 local 59 k
python-srpm-macros noarch 3.11-6.fc38 local 25 k
qt5-srpm-macros noarch 5.15.7-1.fc38 local 7.9 k
readline i686 8.2-2.fc38 local 218 k
rpm i686 4.18.0-8.fc38 local 543 k
rpm-build-libs i686 4.18.0-8.fc38 local 102 k
rpm-libs i686 4.18.0-8.fc38 local 341 k
rpm-sequoia i686 1.2.0-1.fc38 local 924 k
rpmautospec-rpm-macros noarch 0.3.1-1.fc38 local 8.8 k
rust-srpm-macros noarch 23-1.fc38 local 9.4 k
setup noarch 2.14.3-1.fc38 local 146 k
sqlite-libs i686 3.40.0-1.fc38 local 705 k
systemd-libs i686 252.4-598.fc38 local 662 k
tzdata noarch 2022g-1.fc38 local 432 k
util-linux-core i686 2.38.1-3.fc38 local 467 k
xxhash-libs i686 0.8.1-3.fc37 local 59 k
xz-libs i686 5.2.9-1.fc38 local 101 k
zip i686 3.0-35.fc38 local 263 k
zlib i686 1.2.13-1.fc38 local 92 k
zstd i686 1.5.2-3.fc37 local 418 k
Installing Groups:
build
Transaction Summary
=========================================================================================================================
Install 153 Packages
Total size: 53 M
Installed size: 179 M
Downloading Packages:
[SKIPPED] libgcc-13.0.0-0.4.fc38.i686.rpm: Already downloaded
[SKIPPED] libgomp-13.0.0-0.4.fc38.i686.rpm: Already downloaded
[SKIPPED] libstdc++-13.0.0-0.4.fc38.i686.rpm: Already downloaded
[SKIPPED] alternatives-1.21-1.fc38.i686.rpm: Already downloaded
[SKIPPED] ansible-srpm-macros-1-8.1.fc38.noarch.rpm: Already downloaded
[SKIPPED] audit-libs-3.0.9-2.fc38.i686.rpm: Already downloaded
[SKIPPED] authselect-1.4.2-1.fc38.i686.rpm: Already downloaded
[SKIPPED] authselect-libs-1.4.2-1.fc38.i686.rpm: Already downloaded
[SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded
[SKIPPED] bash-5.2.9-3.fc38.i686.rpm: Already downloaded
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Installing : curl-7.87.0-1.fc38.i686 138/153
Running scriptlet: rpm-4.18.0-8.fc38.i686 139/153
Installing : rpm-4.18.0-8.fc38.i686 139/153
Installing : efi-srpm-macros-5-6.fc37.noarch 140/153
Installing : lua-srpm-macros-1-7.fc37.noarch 141/153
Installing : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch 142/153
Installing : fonts-srpm-macros-1:2.0.5-10.fc38.noarch 143/153
Installing : go-srpm-macros-3.2.0-1.fc38.noarch 144/153
Installing : python-srpm-macros-3.11-6.fc38.noarch 145/153
Installing : redhat-rpm-config-235-1.fc38.noarch 146/153
Installing : xxhash-libs-0.8.1-3.fc37.i686 147/153
Installing : gdb-minimal-12.1-10.fc38.i686 148/153
Installing : debugedit-5.0-5.fc37.i686 149/153
Installing : rpm-build-4.18.0-8.fc38.i686 150/153
Installing : util-linux-2.38.1-3.fc38.i686 151/153
Installing : which-2.21-36.fc38.i686 152/153
Installing : info-7.0.1-1.fc38.i686 153/153
Running scriptlet: filesystem-3.18-2.fc37.i686 153/153
Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 153/153
Running scriptlet: authselect-libs-1.4.2-1.fc38.i686 153/153
Running scriptlet: rpm-4.18.0-8.fc38.i686 153/153
Running scriptlet: info-7.0.1-1.fc38.i686 153/153
Verifying : libgcc-13.0.0-0.4.fc38.i686 1/153
Verifying : libgomp-13.0.0-0.4.fc38.i686 2/153
Verifying : libstdc++-13.0.0-0.4.fc38.i686 3/153
Verifying : alternatives-1.21-1.fc38.i686 4/153
Verifying : ansible-srpm-macros-1-8.1.fc38.noarch 5/153
Verifying : audit-libs-3.0.9-2.fc38.i686 6/153
Verifying : authselect-1.4.2-1.fc38.i686 7/153
Verifying : authselect-libs-1.4.2-1.fc38.i686 8/153
Verifying : basesystem-11-14.fc37.noarch 9/153
Verifying : bash-5.2.9-3.fc38.i686 10/153
Verifying : binutils-2.39-6.fc38.i686 11/153
Verifying : binutils-gold-2.39-6.fc38.i686 12/153
Verifying : bzip2-1.0.8-12.fc37.i686 13/153
Verifying : bzip2-libs-1.0.8-12.fc37.i686 14/153
Verifying : ca-certificates-2022.2.54-5.fc37.noarch 15/153
Verifying : coreutils-9.1-8.fc38.i686 16/153
Verifying : coreutils-common-9.1-8.fc38.i686 17/153
Verifying : cpio-2.13-13.fc38.i686 18/153
Verifying : cracklib-2.9.7-30.fc38.i686 19/153
Verifying : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 20/153
Verifying : curl-7.87.0-1.fc38.i686 21/153
Verifying : cyrus-sasl-lib-2.1.28-8.fc38.i686 22/153
Verifying : debugedit-5.0-5.fc37.i686 23/153
Verifying : diffutils-3.8-3.fc37.i686 24/153
Verifying : dwz-0.15-1.fc38.i686 25/153
Verifying : ed-1.18-2.fc37.i686 26/153
Verifying : efi-srpm-macros-5-6.fc37.noarch 27/153
Verifying : elfutils-0.188-3.fc38.i686 28/153
Verifying : elfutils-debuginfod-client-0.188-3.fc38.i686 29/153
Verifying : elfutils-default-yama-scope-0.188-3.fc38.noarch 30/153
Verifying : elfutils-libelf-0.188-3.fc38.i686 31/153
Verifying : elfutils-libs-0.188-3.fc38.i686 32/153
Verifying : fedora-gpg-keys-38-0.3.noarch 33/153
Verifying : fedora-release-38-0.6.noarch 34/153
Verifying : fedora-release-common-38-0.6.noarch 35/153
Verifying : fedora-release-identity-basic-38-0.6.noarch 36/153
Verifying : fedora-repos-38-0.3.noarch 37/153
Verifying : fedora-repos-rawhide-38-0.3.noarch 38/153
Verifying : file-5.42-4.fc37.i686 39/153
Verifying : file-libs-5.42-4.fc37.i686 40/153
Verifying : filesystem-3.18-2.fc37.i686 41/153
Verifying : findutils-1:4.9.0-2.fc37.i686 42/153
Verifying : fonts-srpm-macros-1:2.0.5-10.fc38.noarch 43/153
Verifying : fpc-srpm-macros-1.3-6.fc37.noarch 44/153
Verifying : gawk-5.1.1-4.fc37.i686 45/153
Verifying : gdb-minimal-12.1-10.fc38.i686 46/153
Verifying : gdbm-libs-1:1.23-2.fc37.i686 47/153
Verifying : ghc-srpm-macros-1.5.0-7.fc37.noarch 48/153
Verifying : glibc-2.36.9000-19.fc38.i686 49/153
Verifying : glibc-common-2.36.9000-19.fc38.i686 50/153
Verifying : glibc-gconv-extra-2.36.9000-19.fc38.i686 51/153
Verifying : glibc-minimal-langpack-2.36.9000-19.fc38.i686 52/153
Verifying : gmp-1:6.2.1-3.fc37.i686 53/153
Verifying : gnat-srpm-macros-4-16.fc37.noarch 54/153
Verifying : go-srpm-macros-3.2.0-1.fc38.noarch 55/153
Verifying : grep-3.8-1.fc38.i686 56/153
Verifying : gzip-1.12-2.fc37.i686 57/153
Verifying : info-7.0.1-1.fc38.i686 58/153
Verifying : jansson-2.13.1-5.fc37.i686 59/153
Verifying : kernel-srpm-macros-1.0-15.fc37.noarch 60/153
Verifying : keyutils-libs-1.6.1-5.fc37.i686 61/153
Verifying : krb5-libs-1.20.1-3.fc38.i686 62/153
Verifying : libacl-2.3.1-4.fc37.i686 63/153
Verifying : libarchive-3.6.1-3.fc38.i686 64/153
Verifying : libattr-2.5.1-5.fc37.i686 65/153
Verifying : libblkid-2.38.1-3.fc38.i686 66/153
Verifying : libbrotli-1.0.9-9.fc37.i686 67/153
Verifying : libcap-2.48-5.fc37.i686 68/153
Verifying : libcap-ng-0.8.3-4.fc38.i686 69/153
Verifying : libcom_err-1.46.5-3.fc37.i686 70/153
Verifying : libcurl-7.87.0-1.fc38.i686 71/153
Verifying : libdb-5.3.28-54.fc38.i686 72/153
Verifying : libeconf-0.4.0-4.fc37.i686 73/153
Verifying : libevent-2.1.12-7.fc37.i686 74/153
Verifying : libfdisk-2.38.1-3.fc38.i686 75/153
Verifying : libffi-3.4.4-1.fc38.i686 76/153
Verifying : libidn2-2.3.4-1.fc38.i686 77/153
Verifying : libmount-2.38.1-3.fc38.i686 78/153
Verifying : libnghttp2-1.51.0-1.fc38.i686 79/153
Verifying : libnsl2-2.0.0-4.fc37.i686 80/153
Verifying : libpkgconf-1.8.0-3.fc37.i686 81/153
Verifying : libpsl-0.21.2-1.fc38.i686 82/153
Verifying : libpwquality-1.4.5-1.fc38.i686 83/153
Verifying : libselinux-3.5-0.rc1.1.fc38.i686 84/153
Verifying : libsemanage-3.5-0.rc1.1.fc38.i686 85/153
Verifying : libsepol-3.5-0.rc1.1.fc38.i686 86/153
Verifying : libsigsegv-2.14-3.fc37.i686 87/153
Verifying : libsmartcols-2.38.1-3.fc38.i686 88/153
Verifying : libssh-0.10.4-2.fc38.i686 89/153
Verifying : libssh-config-0.10.4-2.fc38.noarch 90/153
Verifying : libtasn1-4.19.0-1.fc38.i686 91/153
Verifying : libtirpc-1.3.3-0.fc37.i686 92/153
Verifying : libunistring-1.0-2.fc37.i686 93/153
Verifying : libutempter-1.2.1-7.fc37.i686 94/153
Verifying : libuuid-2.38.1-3.fc38.i686 95/153
Verifying : libverto-0.3.2-4.fc37.i686 96/153
Verifying : libxcrypt-4.4.33-5.fc38.i686 97/153
Verifying : libxml2-2.10.3-2.fc38.i686 98/153
Verifying : libzstd-1.5.2-3.fc37.i686 99/153
Verifying : lua-libs-5.4.4-6.fc38.i686 100/153
Verifying : lua-srpm-macros-1-7.fc37.noarch 101/153
Verifying : lz4-libs-1.9.3-5.fc37.i686 102/153
Verifying : mpfr-4.1.1-2.fc38.i686 103/153
Verifying : ncurses-base-6.3-5.20221126.fc38.noarch 104/153
Verifying : ncurses-libs-6.3-5.20221126.fc38.i686 105/153
Verifying : nettle-3.8-2.fc37.i686 106/153
Verifying : nim-srpm-macros-3-7.fc37.noarch 107/153
Verifying : ocaml-srpm-macros-7-2.fc37.noarch 108/153
Verifying : openblas-srpm-macros-2-12.fc37.noarch 109/153
Verifying : openldap-2.6.3-1.fc38.i686 110/153
Verifying : openssl-libs-1:3.0.5-6.fc38.i686 111/153
Verifying : p11-kit-0.24.1-5.fc38.i686 112/153
Verifying : p11-kit-trust-0.24.1-5.fc38.i686 113/153
Verifying : package-notes-srpm-macros-0.5-6.fc38.noarch 114/153
Verifying : pam-1.5.2-15.fc38.i686 115/153
Verifying : pam-libs-1.5.2-15.fc38.i686 116/153
Verifying : patch-2.7.6-17.fc37.i686 117/153
Verifying : pcre2-10.40-1.fc37.1.i686 118/153
Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 119/153
Verifying : perl-srpm-macros-1-47.fc38.noarch 120/153
Verifying : pkgconf-1.8.0-3.fc37.i686 121/153
Verifying : pkgconf-m4-1.8.0-3.fc37.noarch 122/153
Verifying : pkgconf-pkg-config-1.8.0-3.fc37.i686 123/153
Verifying : popt-1.19-1.fc38.i686 124/153
Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 125/153
Verifying : python-srpm-macros-3.11-6.fc38.noarch 126/153
Verifying : qt5-srpm-macros-5.15.7-1.fc38.noarch 127/153
Verifying : readline-8.2-2.fc38.i686 128/153
Verifying : redhat-rpm-config-235-1.fc38.noarch 129/153
Verifying : rpm-4.18.0-8.fc38.i686 130/153
Verifying : rpm-build-4.18.0-8.fc38.i686 131/153
Verifying : rpm-build-libs-4.18.0-8.fc38.i686 132/153
Verifying : rpm-libs-4.18.0-8.fc38.i686 133/153
Verifying : rpm-sequoia-1.2.0-1.fc38.i686 134/153
Verifying : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch 135/153
Verifying : rust-srpm-macros-23-1.fc38.noarch 136/153
Verifying : sed-4.8-11.fc37.i686 137/153
Verifying : setup-2.14.3-1.fc38.noarch 138/153
Verifying : shadow-utils-2:4.13-3.fc38.i686 139/153
Verifying : sqlite-libs-3.40.0-1.fc38.i686 140/153
Verifying : systemd-libs-252.4-598.fc38.i686 141/153
Verifying : tar-2:1.34-5.fc38.i686 142/153
Verifying : tzdata-2022g-1.fc38.noarch 143/153
Verifying : unzip-6.0-58.fc38.i686 144/153
Verifying : util-linux-2.38.1-3.fc38.i686 145/153
Verifying : util-linux-core-2.38.1-3.fc38.i686 146/153
Verifying : which-2.21-36.fc38.i686 147/153
Verifying : xxhash-libs-0.8.1-3.fc37.i686 148/153
Verifying : xz-5.2.9-1.fc38.i686 149/153
Verifying : xz-libs-5.2.9-1.fc38.i686 150/153
Verifying : zip-3.0-35.fc38.i686 151/153
Verifying : zlib-1.2.13-1.fc38.i686 152/153
Verifying : zstd-1.5.2-3.fc37.i686 153/153
Installed:
alternatives-1.21-1.fc38.i686
ansible-srpm-macros-1-8.1.fc38.noarch
audit-libs-3.0.9-2.fc38.i686
authselect-1.4.2-1.fc38.i686
authselect-libs-1.4.2-1.fc38.i686
basesystem-11-14.fc37.noarch
bash-5.2.9-3.fc38.i686
binutils-2.39-6.fc38.i686
binutils-gold-2.39-6.fc38.i686
bzip2-1.0.8-12.fc37.i686
bzip2-libs-1.0.8-12.fc37.i686
ca-certificates-2022.2.54-5.fc37.noarch
coreutils-9.1-8.fc38.i686
coreutils-common-9.1-8.fc38.i686
cpio-2.13-13.fc38.i686
cracklib-2.9.7-30.fc38.i686
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
curl-7.87.0-1.fc38.i686
cyrus-sasl-lib-2.1.28-8.fc38.i686
debugedit-5.0-5.fc37.i686
diffutils-3.8-3.fc37.i686
dwz-0.15-1.fc38.i686
ed-1.18-2.fc37.i686
efi-srpm-macros-5-6.fc37.noarch
elfutils-0.188-3.fc38.i686
elfutils-debuginfod-client-0.188-3.fc38.i686
elfutils-default-yama-scope-0.188-3.fc38.noarch
elfutils-libelf-0.188-3.fc38.i686
elfutils-libs-0.188-3.fc38.i686
fedora-gpg-keys-38-0.3.noarch
fedora-release-38-0.6.noarch
fedora-release-common-38-0.6.noarch
fedora-release-identity-basic-38-0.6.noarch
fedora-repos-38-0.3.noarch
fedora-repos-rawhide-38-0.3.noarch
file-5.42-4.fc37.i686
file-libs-5.42-4.fc37.i686
filesystem-3.18-2.fc37.i686
findutils-1:4.9.0-2.fc37.i686
fonts-srpm-macros-1:2.0.5-10.fc38.noarch
fpc-srpm-macros-1.3-6.fc37.noarch
gawk-5.1.1-4.fc37.i686
gdb-minimal-12.1-10.fc38.i686
gdbm-libs-1:1.23-2.fc37.i686
ghc-srpm-macros-1.5.0-7.fc37.noarch
glibc-2.36.9000-19.fc38.i686
glibc-common-2.36.9000-19.fc38.i686
glibc-gconv-extra-2.36.9000-19.fc38.i686
glibc-minimal-langpack-2.36.9000-19.fc38.i686
gmp-1:6.2.1-3.fc37.i686
gnat-srpm-macros-4-16.fc37.noarch
go-srpm-macros-3.2.0-1.fc38.noarch
grep-3.8-1.fc38.i686
gzip-1.12-2.fc37.i686
info-7.0.1-1.fc38.i686
jansson-2.13.1-5.fc37.i686
kernel-srpm-macros-1.0-15.fc37.noarch
keyutils-libs-1.6.1-5.fc37.i686
krb5-libs-1.20.1-3.fc38.i686
libacl-2.3.1-4.fc37.i686
libarchive-3.6.1-3.fc38.i686
libattr-2.5.1-5.fc37.i686
libblkid-2.38.1-3.fc38.i686
libbrotli-1.0.9-9.fc37.i686
libcap-2.48-5.fc37.i686
libcap-ng-0.8.3-4.fc38.i686
libcom_err-1.46.5-3.fc37.i686
libcurl-7.87.0-1.fc38.i686
libdb-5.3.28-54.fc38.i686
libeconf-0.4.0-4.fc37.i686
libevent-2.1.12-7.fc37.i686
libfdisk-2.38.1-3.fc38.i686
libffi-3.4.4-1.fc38.i686
libgcc-13.0.0-0.4.fc38.i686
libgomp-13.0.0-0.4.fc38.i686
libidn2-2.3.4-1.fc38.i686
libmount-2.38.1-3.fc38.i686
libnghttp2-1.51.0-1.fc38.i686
libnsl2-2.0.0-4.fc37.i686
libpkgconf-1.8.0-3.fc37.i686
libpsl-0.21.2-1.fc38.i686
libpwquality-1.4.5-1.fc38.i686
libselinux-3.5-0.rc1.1.fc38.i686
libsemanage-3.5-0.rc1.1.fc38.i686
libsepol-3.5-0.rc1.1.fc38.i686
libsigsegv-2.14-3.fc37.i686
libsmartcols-2.38.1-3.fc38.i686
libssh-0.10.4-2.fc38.i686
libssh-config-0.10.4-2.fc38.noarch
libstdc++-13.0.0-0.4.fc38.i686
libtasn1-4.19.0-1.fc38.i686
libtirpc-1.3.3-0.fc37.i686
libunistring-1.0-2.fc37.i686
libutempter-1.2.1-7.fc37.i686
libuuid-2.38.1-3.fc38.i686
libverto-0.3.2-4.fc37.i686
libxcrypt-4.4.33-5.fc38.i686
libxml2-2.10.3-2.fc38.i686
libzstd-1.5.2-3.fc37.i686
lua-libs-5.4.4-6.fc38.i686
lua-srpm-macros-1-7.fc37.noarch
lz4-libs-1.9.3-5.fc37.i686
mpfr-4.1.1-2.fc38.i686
ncurses-base-6.3-5.20221126.fc38.noarch
ncurses-libs-6.3-5.20221126.fc38.i686
nettle-3.8-2.fc37.i686
nim-srpm-macros-3-7.fc37.noarch
ocaml-srpm-macros-7-2.fc37.noarch
openblas-srpm-macros-2-12.fc37.noarch
openldap-2.6.3-1.fc38.i686
openssl-libs-1:3.0.5-6.fc38.i686
p11-kit-0.24.1-5.fc38.i686
p11-kit-trust-0.24.1-5.fc38.i686
package-notes-srpm-macros-0.5-6.fc38.noarch
pam-1.5.2-15.fc38.i686
pam-libs-1.5.2-15.fc38.i686
patch-2.7.6-17.fc37.i686
pcre2-10.40-1.fc37.1.i686
pcre2-syntax-10.40-1.fc37.1.noarch
perl-srpm-macros-1-47.fc38.noarch
pkgconf-1.8.0-3.fc37.i686
pkgconf-m4-1.8.0-3.fc37.noarch
pkgconf-pkg-config-1.8.0-3.fc37.i686
popt-1.19-1.fc38.i686
publicsuffix-list-dafsa-20221208-1.fc38.noarch
python-srpm-macros-3.11-6.fc38.noarch
qt5-srpm-macros-5.15.7-1.fc38.noarch
readline-8.2-2.fc38.i686
redhat-rpm-config-235-1.fc38.noarch
rpm-4.18.0-8.fc38.i686
rpm-build-4.18.0-8.fc38.i686
rpm-build-libs-4.18.0-8.fc38.i686
rpm-libs-4.18.0-8.fc38.i686
rpm-sequoia-1.2.0-1.fc38.i686
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
rust-srpm-macros-23-1.fc38.noarch
sed-4.8-11.fc37.i686
setup-2.14.3-1.fc38.noarch
shadow-utils-2:4.13-3.fc38.i686
sqlite-libs-3.40.0-1.fc38.i686
systemd-libs-252.4-598.fc38.i686
tar-2:1.34-5.fc38.i686
tzdata-2022g-1.fc38.noarch
unzip-6.0-58.fc38.i686
util-linux-2.38.1-3.fc38.i686
util-linux-core-2.38.1-3.fc38.i686
which-2.21-36.fc38.i686
xxhash-libs-0.8.1-3.fc37.i686
xz-5.2.9-1.fc38.i686
xz-libs-5.2.9-1.fc38.i686
zip-3.0-35.fc38.i686
zlib-1.2.13-1.fc38.i686
zstd-1.5.2-3.fc37.i686
Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: ncurses-base-6.3-5.20221126.fc38.noarch
glibc-2.36.9000-19.fc38.i686
libunistring-1.0-2.fc37.i686
binutils-gold-2.39-6.fc38.i686
perl-srpm-macros-1-47.fc38.noarch
util-linux-core-2.38.1-3.fc38.i686
gdbm-libs-1.23-2.fc37.i686
package-notes-srpm-macros-0.5-6.fc38.noarch
rust-srpm-macros-23-1.fc38.noarch
libffi-3.4.4-1.fc38.i686
libselinux-3.5-0.rc1.1.fc38.i686
libsmartcols-2.38.1-3.fc38.i686
libsepol-3.5-0.rc1.1.fc38.i686
libtasn1-4.19.0-1.fc38.i686
cpio-2.13-13.fc38.i686
shadow-utils-4.13-3.fc38.i686
p11-kit-0.24.1-5.fc38.i686
fpc-srpm-macros-1.3-6.fc37.noarch
gmp-6.2.1-3.fc37.i686
libverto-0.3.2-4.fc37.i686
libgomp-13.0.0-0.4.fc38.i686
krb5-libs-1.20.1-3.fc38.i686
filesystem-3.18-2.fc37.i686
ncurses-libs-6.3-5.20221126.fc38.i686
dwz-0.15-1.fc38.i686
libtirpc-1.3.3-0.fc37.i686
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
zlib-1.2.13-1.fc38.i686
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
go-srpm-macros-3.2.0-1.fc38.noarch
systemd-libs-252.4-598.fc38.i686
zip-3.0-35.fc38.i686
libmount-2.38.1-3.fc38.i686
gnat-srpm-macros-4-16.fc37.noarch
xxhash-libs-0.8.1-3.fc37.i686
elfutils-default-yama-scope-0.188-3.fc38.noarch
ca-certificates-2022.2.54-5.fc37.noarch
ghc-srpm-macros-1.5.0-7.fc37.noarch
lz4-libs-1.9.3-5.fc37.i686
bzip2-1.0.8-12.fc37.i686
sqlite-libs-3.40.0-1.fc38.i686
gzip-1.12-2.fc37.i686
readline-8.2-2.fc38.i686
pkgconf-pkg-config-1.8.0-3.fc37.i686
libstdc++-13.0.0-0.4.fc38.i686
glibc-common-2.36.9000-19.fc38.i686
qt5-srpm-macros-5.15.7-1.fc38.noarch
sed-4.8-11.fc37.i686
lua-srpm-macros-1-7.fc37.noarch
fedora-repos-rawhide-38-0.3.noarch
jansson-2.13.1-5.fc37.i686
openldap-2.6.3-1.fc38.i686
publicsuffix-list-dafsa-20221208-1.fc38.noarch
file-libs-5.42-4.fc37.i686
libdb-5.3.28-54.fc38.i686
libevent-2.1.12-7.fc37.i686
binutils-2.39-6.fc38.i686
fedora-gpg-keys-38-0.3.noarch
libidn2-2.3.4-1.fc38.i686
fedora-release-identity-basic-38-0.6.noarch
findutils-4.9.0-2.fc37.i686
coreutils-9.1-8.fc38.i686
kernel-srpm-macros-1.0-15.fc37.noarch
rpm-4.18.0-8.fc38.i686
rpm-sequoia-1.2.0-1.fc38.i686
authselect-libs-1.4.2-1.fc38.i686
libcurl-7.87.0-1.fc38.i686
tzdata-2022g-1.fc38.noarch
gawk-5.1.1-4.fc37.i686
libnsl2-2.0.0-4.fc37.i686
libpkgconf-1.8.0-3.fc37.i686
ocaml-srpm-macros-7-2.fc37.noarch
pam-libs-1.5.2-15.fc38.i686
libssh-config-0.10.4-2.fc38.noarch
libuuid-2.38.1-3.fc38.i686
libcom_err-1.46.5-3.fc37.i686
libbrotli-1.0.9-9.fc37.i686
libattr-2.5.1-5.fc37.i686
fedora-release-common-38-0.6.noarch
xz-5.2.9-1.fc38.i686
nim-srpm-macros-3-7.fc37.noarch
curl-7.87.0-1.fc38.i686
pkgconf-1.8.0-3.fc37.i686
basesystem-11-14.fc37.noarch
pcre2-10.40-1.fc37.1.i686
libzstd-1.5.2-3.fc37.i686
libssh-0.10.4-2.fc38.i686
setup-2.14.3-1.fc38.noarch
lua-libs-5.4.4-6.fc38.i686
glibc-gconv-extra-2.36.9000-19.fc38.i686
libcap-2.48-5.fc37.i686
pcre2-syntax-10.40-1.fc37.1.noarch
python-srpm-macros-3.11-6.fc38.noarch
which-2.21-36.fc38.i686
pkgconf-m4-1.8.0-3.fc37.noarch
rpm-libs-4.18.0-8.fc38.i686
libpwquality-1.4.5-1.fc38.i686
glibc-minimal-langpack-2.36.9000-19.fc38.i686
grep-3.8-1.fc38.i686
openblas-srpm-macros-2-12.fc37.noarch
nettle-3.8-2.fc37.i686
diffutils-3.8-3.fc37.i686
file-5.42-4.fc37.i686
openssl-libs-3.0.5-6.fc38.i686
libgcc-13.0.0-0.4.fc38.i686
popt-1.19-1.fc38.i686
authselect-1.4.2-1.fc38.i686
cracklib-2.9.7-30.fc38.i686
util-linux-2.38.1-3.fc38.i686
fonts-srpm-macros-2.0.5-10.fc38.noarch
libblkid-2.38.1-3.fc38.i686
redhat-rpm-config-235-1.fc38.noarch
alternatives-1.21-1.fc38.i686
libutempter-1.2.1-7.fc37.i686
coreutils-common-9.1-8.fc38.i686
ansible-srpm-macros-1-8.1.fc38.noarch
libpsl-0.21.2-1.fc38.i686
elfutils-libs-0.188-3.fc38.i686
bzip2-libs-1.0.8-12.fc37.i686
pam-1.5.2-15.fc38.i686
mpfr-4.1.1-2.fc38.i686
elfutils-libelf-0.188-3.fc38.i686
bash-5.2.9-3.fc38.i686
cyrus-sasl-lib-2.1.28-8.fc38.i686
fedora-release-38-0.6.noarch
elfutils-0.188-3.fc38.i686
rpm-build-4.18.0-8.fc38.i686
info-7.0.1-1.fc38.i686
patch-2.7.6-17.fc37.i686
keyutils-libs-1.6.1-5.fc37.i686
audit-libs-3.0.9-2.fc38.i686
libeconf-0.4.0-4.fc37.i686
libacl-2.3.1-4.fc37.i686
gdb-minimal-12.1-10.fc38.i686
ed-1.18-2.fc37.i686
libcap-ng-0.8.3-4.fc38.i686
tar-1.34-5.fc38.i686
unzip-6.0-58.fc38.i686
debugedit-5.0-5.fc37.i686
p11-kit-trust-0.24.1-5.fc38.i686
rpm-build-libs-4.18.0-8.fc38.i686
libnghttp2-1.51.0-1.fc38.i686
libfdisk-2.38.1-3.fc38.i686
elfutils-debuginfod-client-0.188-3.fc38.i686
fedora-repos-38-0.3.noarch
libxcrypt-4.4.33-5.fc38.i686
zstd-1.5.2-3.fc37.i686
xz-libs-5.2.9-1.fc38.i686
libsigsegv-2.14-3.fc37.i686
efi-srpm-macros-5-6.fc37.noarch
libsemanage-3.5-0.rc1.1.fc38.i686
libxml2-2.10.3-2.fc38.i686
libarchive-3.6.1-3.fc38.i686
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1659312000
Wrote: /builddir/build/SRPMS/hmmer-3.3.2-2.fc38.src.rpm
Finish: rpmbuild -bs
cp: ‘var/lib/mock/fedora-rawhide-i686-1672268095.305560/root/var/log’: No such file or directory
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1672268095.305560/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-i686-1672268095.305560/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-i686-1672268095.305560/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-hb2omht5/hmmer/hmmer.spec) Config(child) 0 minutes 51 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=115200): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/hmmer-3.3.2-2.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1672268095.305560 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/hmmer-3.3.2-2.fc38.src.rpm) Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1672268095.305560/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1672268095.305560/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1672268095.305560/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 12 kB/s | 3.0 kB 00:00
Additional repo https_jakub_fedorapeople_org_fe 10 kB/s | 3.0 kB 00:00
local 14 kB/s | 3.8 kB 00:00
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for hmmer-3.3.2-2.fc38.src.rpm
Start: build setup for hmmer-3.3.2-2.fc38.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1659312000
Wrote: /builddir/build/SRPMS/hmmer-3.3.2-2.fc38.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 11 kB/s | 3.0 kB 00:00
Additional repo https_jakub_fedorapeople_org_fe 9.9 kB/s | 3.0 kB 00:00
local 14 kB/s | 3.8 kB 00:00
Dependencies resolved.
=============================================================================================================================
Package Arch Version Repository Size
=============================================================================================================================
Installing:
make i686 1:4.3-11.fc37 local 540 k
perl i686 4:5.36.0-492.fc38 local 16 k
Installing dependencies:
annobin-docs noarch 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 93 k
annobin-plugin-gcc i686 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 889 k
cpp i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 11 M
expat i686 2.5.0-1.fc38 local 115 k
gc i686 8.2.2-1.fc38 local 112 k
gcc i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 34 M
gcc-c++ i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 13 M
gcc-plugin-annobin i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 30 k
glibc-devel i686 2.36.9000-19.fc38 local 43 k
glibc-headers-x86 noarch 2.36.9000-19.fc38 local 450 k
gnupg2 i686 2.3.8-1.fc38 local 2.6 M
gnutls i686 3.7.8-9.fc38 local 1.1 M
groff-base i686 1.22.4-10.fc37 local 1.0 M
guile22 i686 2.2.7-6.fc37 local 6.5 M
kernel-headers i686 6.1.0-1.fc38 local 1.4 M
libasan i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 491 k
libassuan i686 2.5.5-5.fc37 local 69 k
libatomic i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 17 k
libb2 i686 0.98.1-7.fc37 local 35 k
libgcrypt i686 1.10.1-6.fc38 local 484 k
libgpg-error i686 1.46-1.fc38 local 225 k
libksba i686 1.6.3-1.fc38 local 161 k
libmpc i686 1.2.1-5.fc37 local 65 k
libstdc++-devel i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 2.4 M
libtool-ltdl i686 2.4.7-3.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 39 k
libubsan i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 219 k
libxcrypt-devel i686 4.4.33-5.fc38 local 30 k
mpdecimal i686 2.5.1-4.fc37 local 106 k
ncurses i686 6.3-5.20221126.fc38 local 409 k
npth i686 1.6-10.fc38 local 24 k
perl-Algorithm-Diff noarch 1.2010-7.fc37 local 47 k
perl-Archive-Tar noarch 2.40-490.fc37 local 71 k
perl-Archive-Zip noarch 1.68-9.fc37 local 106 k
perl-Attribute-Handlers noarch 1.02-492.fc38 local 31 k
perl-AutoLoader noarch 5.74-492.fc38 local 24 k
perl-AutoSplit noarch 5.74-492.fc38 local 25 k
perl-B i686 1.83-492.fc38 local 189 k
perl-Benchmark noarch 1.23-492.fc38 local 30 k
perl-CPAN noarch 2.34-4.fc37 local 557 k
perl-CPAN-Meta noarch 2.150010-489.fc37 local 176 k
perl-CPAN-Meta-Requirements noarch 2.140-490.fc37 local 31 k
perl-CPAN-Meta-YAML noarch 0.018-490.fc37 local 26 k
perl-Carp noarch 1.52-489.fc37 local 29 k
perl-Class-Struct noarch 0.66-492.fc38 local 25 k
perl-Compress-Bzip2 i686 2.28-11.fc38 local 69 k
perl-Compress-Raw-Bzip2 i686 2.201-2.fc37 local 35 k
perl-Compress-Raw-Lzma i686 2.201-5.fc38 local 51 k
perl-Compress-Raw-Zlib i686 2.202-4.fc38 local 65 k
perl-Config-Extensions noarch 0.03-492.fc38 local 15 k
perl-Config-Perl-V noarch 0.34-1.fc38 local 21 k
perl-DBM_Filter noarch 0.06-492.fc38 local 35 k
perl-DB_File i686 1.858-4.fc37 local 82 k
perl-Data-Dumper i686 2.184-490.fc37 local 58 k
perl-Data-OptList noarch 0.112-5.fc37 local 27 k
perl-Data-Section noarch 0.200007-17.fc37 local 25 k
perl-Devel-PPPort i686 3.68-490.fc37 local 226 k
perl-Devel-Peek i686 1.32-492.fc38 local 36 k
perl-Devel-SelfStubber noarch 1.06-492.fc38 local 17 k
perl-Devel-Size i686 0.83-13.fc37 local 31 k
perl-Digest noarch 1.20-489.fc37 local 26 k
perl-Digest-MD5 i686 2.58-489.fc37 local 37 k
perl-Digest-SHA i686 1:6.03-1.fc37 local 62 k
perl-Digest-SHA1 i686 2.13-37.fc37 local 57 k
perl-DirHandle noarch 1.05-492.fc38 local 15 k
perl-Dumpvalue noarch 2.27-492.fc38 local 21 k
perl-DynaLoader i686 1.52-492.fc38 local 29 k
perl-Encode i686 4:3.19-492.fc38 local 1.2 M
perl-Encode-devel i686 4:3.19-492.fc38 local 42 k
perl-English noarch 1.11-492.fc38 local 17 k
perl-Env noarch 1.05-489.fc37 local 20 k
perl-Errno i686 1.36-492.fc38 local 18 k
perl-Exporter noarch 5.77-489.fc37 local 31 k
perl-ExtUtils-CBuilder noarch 1:0.280236-490.fc38 local 46 k
perl-ExtUtils-Command noarch 2:7.64-490.fc37 local 14 k
perl-ExtUtils-Constant noarch 0.25-492.fc38 local 50 k
perl-ExtUtils-Embed noarch 1.35-492.fc38 local 21 k
perl-ExtUtils-Install noarch 2.20-489.fc37 local 44 k
perl-ExtUtils-MM-Utils noarch 2:7.64-490.fc37 local 12 k
perl-ExtUtils-MakeMaker noarch 2:7.64-490.fc37 local 290 k
perl-ExtUtils-Manifest noarch 1:1.73-489.fc37 local 34 k
perl-ExtUtils-Miniperl noarch 1.11-492.fc38 local 18 k
perl-ExtUtils-ParseXS noarch 1:3.45-489.fc37 local 182 k
perl-Fcntl i686 1.15-492.fc38 local 24 k
perl-File-Basename noarch 2.85-492.fc38 local 20 k
perl-File-Compare noarch 1.100.700-492.fc38 local 16 k
perl-File-Copy noarch 2.39-492.fc38 local 23 k
perl-File-DosGlob i686 1.12-492.fc38 local 23 k
perl-File-Fetch noarch 1.04-489.fc37 local 31 k
perl-File-Find noarch 1.40-492.fc38 local 28 k
perl-File-HomeDir noarch 1.006-7.fc37 local 57 k
perl-File-Path noarch 2.18-489.fc37 local 35 k
perl-File-Temp noarch 1:0.231.100-489.fc37 local 59 k
perl-File-Which noarch 1.27-6.fc37 local 22 k
perl-File-stat noarch 1.12-492.fc38 local 20 k
perl-FileCache noarch 1.10-492.fc38 local 18 k
perl-FileHandle noarch 2.03-492.fc38 local 19 k
perl-Filter i686 2:1.64-1.fc38 local 82 k
perl-Filter-Simple noarch 0.96-489.fc37 local 27 k
perl-FindBin noarch 1.53-492.fc38 local 17 k
perl-GDBM_File i686 1:1.23-492.fc38 local 48 k
perl-Getopt-Long noarch 1:2.54-1.fc38 local 60 k
perl-Getopt-Std noarch 1.13-492.fc38 local 19 k
perl-HTTP-Tiny noarch 0.082-1.fc37 local 55 k
perl-Hash-Util i686 0.28-492.fc38 local 38 k
perl-Hash-Util-FieldHash i686 1.26-492.fc38 local 42 k
perl-I18N-Collate noarch 1.02-492.fc38 local 17 k
perl-I18N-LangTags noarch 0.45-492.fc38 local 57 k
perl-I18N-Langinfo i686 0.21-492.fc38 local 26 k
perl-IO i686 1.50-492.fc38 local 91 k
perl-IO-Compress noarch 2.201-3.fc37 local 262 k
perl-IO-Compress-Lzma noarch 2.201-2.fc37 local 74 k
perl-IO-Socket-IP noarch 0.41-490.fc37 local 42 k
perl-IO-Zlib noarch 1:1.11-489.fc37 local 19 k
perl-IPC-Cmd noarch 2:1.04-490.fc37 local 40 k
perl-IPC-Open3 noarch 1.22-492.fc38 local 26 k
perl-IPC-SysV i686 2.09-490.fc37 local 42 k
perl-IPC-System-Simple noarch 1.30-9.fc37 local 39 k
perl-Importer noarch 0.026-8.fc38 local 39 k
perl-JSON-PP noarch 1:4.15-1.fc38 local 67 k
perl-Locale-Maketext noarch 1.32-1.fc38 local 95 k
perl-Locale-Maketext-Simple noarch 1:0.21-492.fc38 local 21 k
perl-MIME-Base64 i686 3.16-489.fc37 local 31 k
perl-MRO-Compat noarch 0.15-4.fc37 local 26 k
perl-Math-BigInt noarch 1:1.9998.37-2.fc37 local 201 k
perl-Math-BigInt-FastCalc i686 0.501.300-3.fc37 local 29 k
perl-Math-BigRat noarch 0.2624-2.fc37 local 42 k
perl-Math-Complex noarch 1.59-492.fc38 local 50 k
perl-Memoize noarch 1.03-492.fc38 local 60 k
perl-Module-Build noarch 2:0.42.32-1.fc38 local 236 k
perl-Module-CoreList noarch 1:5.20221220-1.fc38 local 84 k
perl-Module-CoreList-tools noarch 1:5.20221220-1.fc38 local 18 k
perl-Module-Load noarch 1:0.36-489.fc37 local 17 k
perl-Module-Load-Conditional noarch 0.74-489.fc37 local 22 k
perl-Module-Loaded noarch 1:0.08-492.fc38 local 16 k
perl-Module-Metadata noarch 1.000037-489.fc37 local 35 k
perl-Module-Signature noarch 0.88-4.fc37 local 83 k
perl-NDBM_File i686 1.15-492.fc38 local 26 k
perl-NEXT noarch 0.69-492.fc38 local 24 k
perl-Net noarch 1.03-492.fc38 local 28 k
perl-Net-Ping noarch 2.75-2.fc38 local 50 k
perl-ODBM_File i686 1.17-492.fc38 local 26 k
perl-Object-HashBase noarch 0.009-11.fc38 local 25 k
perl-Opcode i686 1.57-492.fc38 local 41 k
perl-POSIX i686 2.03-492.fc38 local 104 k
perl-Package-Generator noarch 1.106-26.fc37 local 23 k
perl-Params-Check noarch 1:0.38-489.fc37 local 22 k
perl-Params-Util i686 1.102-9.fc38 local 33 k
perl-PathTools i686 3.84-489.fc37 local 85 k
perl-Perl-OSType noarch 1.010-490.fc37 local 23 k
perl-PerlIO-via-QuotedPrint noarch 0.10-3.fc37 local 22 k
perl-Pod-Checker noarch 4:1.75-3.fc37 local 32 k
perl-Pod-Escapes noarch 1:1.07-489.fc37 local 20 k
perl-Pod-Functions noarch 1.14-492.fc38 local 17 k
perl-Pod-Html noarch 1.33-492.fc38 local 34 k
perl-Pod-Perldoc noarch 3.28.01-490.fc37 local 84 k
perl-Pod-Simple noarch 1:3.43-490.fc37 local 215 k
perl-Pod-Usage noarch 4:2.03-3.fc37 local 40 k
perl-Safe noarch 2.43-492.fc38 local 28 k
perl-Scalar-List-Utils i686 5:1.63-489.fc38 local 76 k
perl-Search-Dict noarch 1.07-492.fc38 local 16 k
perl-SelectSaver noarch 1.02-492.fc38 local 15 k
perl-SelfLoader noarch 1.26-492.fc38 local 25 k
perl-Socket i686 4:2.036-1.fc38 local 56 k
perl-Software-License noarch 0.104002-2.fc37 local 133 k
perl-Storable i686 1:3.26-489.fc37 local 99 k
perl-Sub-Exporter noarch 0.988-5.fc37 local 72 k
perl-Sub-Install noarch 0.928-33.fc37 local 22 k
perl-Symbol noarch 1.09-492.fc38 local 17 k
perl-Sys-Hostname i686 1.24-492.fc38 local 20 k
perl-Sys-Syslog i686 0.36-490.fc37 local 47 k
perl-Term-ANSIColor noarch 5.01-490.fc37 local 48 k
perl-Term-Cap noarch 1.17-489.fc37 local 22 k
perl-Term-Complete noarch 1.403-492.fc38 local 16 k
perl-Term-ReadLine noarch 1.17-492.fc38 local 22 k
perl-Term-Table noarch 0.016-5.fc38 local 34 k
perl-Test noarch 1.31-492.fc38 local 32 k
perl-Test-Harness noarch 1:3.44-490.fc37 local 268 k
perl-Test-Simple noarch 3:1.302191-2.fc37 local 525 k
perl-Text-Abbrev noarch 1.02-492.fc38 local 15 k
perl-Text-Balanced noarch 2.06-2.fc37 local 49 k
perl-Text-Diff noarch 1.45-16.fc37 local 41 k
perl-Text-Glob noarch 0.11-19.fc38 local 13 k
perl-Text-ParseWords noarch 3.31-489.fc37 local 16 k
perl-Text-Tabs+Wrap noarch 2021.0814-489.fc37 local 22 k
perl-Text-Template noarch 1.61-1.fc38 local 60 k
perl-Thread noarch 3.05-492.fc38 local 21 k
perl-Thread-Queue noarch 3.14-489.fc37 local 21 k
perl-Thread-Semaphore noarch 2.13-492.fc38 local 19 k
perl-Tie noarch 4.6-492.fc38 local 35 k
perl-Tie-File noarch 1.06-492.fc38 local 46 k
perl-Tie-Memoize noarch 1.1-492.fc38 local 17 k
perl-Tie-RefHash noarch 1.40-489.fc37 local 23 k
perl-Time noarch 1.03-492.fc38 local 22 k
perl-Time-HiRes i686 4:1.9770-489.fc37 local 59 k
perl-Time-Local noarch 2:1.300-489.fc37 local 33 k
perl-Time-Piece i686 1.3401-492.fc38 local 44 k
perl-URI noarch 5.17-1.fc38 local 111 k
perl-Unicode-Collate i686 1.31-489.fc37 local 668 k
perl-Unicode-Normalize i686 1.31-489.fc37 local 84 k
perl-Unicode-UCD noarch 0.78-492.fc38 local 82 k
perl-User-pwent noarch 1.03-492.fc38 local 24 k
perl-autodie noarch 2.34-490.fc37 local 94 k
perl-autouse noarch 1.11-492.fc38 local 17 k
perl-base noarch 2.27-492.fc38 local 19 k
perl-bignum noarch 0.66-5.fc37 local 50 k
perl-blib noarch 1.07-492.fc38 local 15 k
perl-constant noarch 1.33-490.fc37 local 23 k
perl-debugger noarch 1.60-492.fc38 local 137 k
perl-deprecate noarch 0.04-492.fc38 local 18 k
perl-devel i686 4:5.36.0-492.fc38 local 699 k
perl-diagnostics noarch 1.39-492.fc38 local 214 k
perl-doc noarch 5.36.0-492.fc38 local 4.7 M
perl-encoding i686 4:3.00-492.fc38 local 63 k
perl-encoding-warnings noarch 0.13-492.fc38 local 20 k
perl-experimental noarch 0.030-1.fc38 local 22 k
perl-fields noarch 2.27-492.fc38 local 19 k
perl-filetest noarch 1.03-492.fc38 local 18 k
perl-if noarch 0.61.000-492.fc38 local 17 k
perl-inc-latest noarch 2:0.500-23.fc37 local 24 k
perl-interpreter i686 4:5.36.0-492.fc38 local 75 k
perl-less noarch 0.03-492.fc38 local 16 k
perl-lib i686 0.65-492.fc38 local 18 k
perl-libnet noarch 3.14-490.fc37 local 126 k
perl-libnetcfg noarch 4:5.36.0-492.fc38 local 19 k
perl-libs i686 4:5.36.0-492.fc38 local 2.2 M
perl-local-lib noarch 2.000029-3.fc37 local 67 k
perl-locale noarch 1.10-492.fc38 local 17 k
perl-macros noarch 4:5.36.0-492.fc38 local 14 k
perl-meta-notation noarch 5.36.0-492.fc38 local 13 k
perl-mro i686 1.26-492.fc38 local 32 k
perl-open noarch 1.13-492.fc38 local 20 k
perl-overload noarch 1.35-492.fc38 local 49 k
perl-overloading noarch 0.02-492.fc38 local 16 k
perl-parent noarch 1:0.239-1.fc38 local 14 k
perl-perlfaq noarch 5.20210520-489.fc37 local 374 k
perl-ph i686 5.36.0-492.fc38 local 45 k
perl-podlators noarch 1:5.00-1.fc38 local 122 k
perl-sigtrap noarch 1.10-492.fc38 local 19 k
perl-sort noarch 2.05-492.fc38 local 16 k
perl-subs noarch 1.04-492.fc38 local 15 k
perl-threads i686 1:2.27-489.fc37 local 59 k
perl-threads-shared i686 1.64-489.fc37 local 45 k
perl-utils noarch 5.36.0-492.fc38 local 58 k
perl-vars noarch 1.05-492.fc38 local 16 k
perl-version i686 8:0.99.29-490.fc37 local 63 k
perl-vmsish noarch 1.04-492.fc38 local 17 k
python-pip-wheel noarch 22.3.1-1.fc38 local 1.4 M
python-setuptools-wheel noarch 65.5.1-1.fc38 local 715 k
python3 i686 3.11.1-1.fc38 local 27 k
python3-libs i686 3.11.1-1.fc38 local 9.3 M
python3-pyparsing noarch 3.0.9-2.fc37 local 255 k
systemtap-sdt-devel i686 4.8~pre16650659g6a096a7d-1.fc38 local 73 k
Transaction Summary
=============================================================================================================================
Install 254 Packages
Total size: 110 M
Total download size: 19 M
Installed size: 352 M
Downloading Packages:
[SKIPPED] annobin-docs-10.99-1.0.1.fc38.noarch.rpm: Already downloaded
[SKIPPED] annobin-plugin-gcc-10.99-1.0.1.fc38.i686.rpm: Already downloaded
[SKIPPED] cpp-13.0.0-0.4.fc38.i686.rpm: Already downloaded
[SKIPPED] gcc-13.0.0-0.4.fc38.i686.rpm: Already downloaded
[SKIPPED] gcc-c++-13.0.0-0.4.fc38.i686.rpm: Already downloaded
[SKIPPED] gcc-plugin-annobin-13.0.0-0.4.fc38.i686.rpm: Already downloaded
[SKIPPED] libasan-13.0.0-0.4.fc38.i686.rpm: Already downloaded
[SKIPPED] libatomic-13.0.0-0.4.fc38.i686.rpm: Already downloaded
[SKIPPED] libstdc++-devel-13.0.0-0.4.fc38.i686.rpm: Already downloaded
[SKIPPED] libtool-ltdl-2.4.7-3.0.1.fc38.i686.rpm: Already downloaded
[SKIPPED] libubsan-13.0.0-0.4.fc38.i686.rpm: Already downloaded
[SKIPPED] expat-2.5.0-1.fc38.i686.rpm: Already downloaded
[SKIPPED] gc-8.2.2-1.fc38.i686.rpm: Already downloaded
[SKIPPED] glibc-devel-2.36.9000-19.fc38.i686.rpm: Already downloaded
[SKIPPED] glibc-headers-x86-2.36.9000-19.fc38.noarch.rpm: Already downloaded
[SKIPPED] gnutls-3.7.8-9.fc38.i686.rpm: Already downloaded
[SKIPPED] groff-base-1.22.4-10.fc37.i686.rpm: Already downloaded
[SKIPPED] guile22-2.2.7-6.fc37.i686.rpm: Already downloaded
[SKIPPED] kernel-headers-6.1.0-1.fc38.i686.rpm: Already downloaded
[SKIPPED] libb2-0.98.1-7.fc37.i686.rpm: Already downloaded
[SKIPPED] libmpc-1.2.1-5.fc37.i686.rpm: Already downloaded
[SKIPPED] libxcrypt-devel-4.4.33-5.fc38.i686.rpm: Already downloaded
[SKIPPED] make-4.3-11.fc37.i686.rpm: Already downloaded
[SKIPPED] mpdecimal-2.5.1-4.fc37.i686.rpm: Already downloaded
[SKIPPED] ncurses-6.3-5.20221126.fc38.i686.rpm: Already downloaded
[SKIPPED] perl-Carp-1.52-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Class-Struct-0.66-492.fc38.noarch.rpm: Already downloaded
[SKIPPED] perl-DynaLoader-1.52-492.fc38.i686.rpm: Already downloaded
[SKIPPED] perl-Encode-3.19-492.fc38.i686.rpm: Already downloaded
[SKIPPED] perl-English-1.11-492.fc38.noarch.rpm: Already downloaded
[SKIPPED] perl-Errno-1.36-492.fc38.i686.rpm: Already downloaded
[SKIPPED] perl-Exporter-5.77-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Fcntl-1.15-492.fc38.i686.rpm: Already downloaded
[SKIPPED] perl-File-Basename-2.85-492.fc38.noarch.rpm: Already downloaded
[SKIPPED] perl-File-Find-1.40-492.fc38.noarch.rpm: Already downloaded
[SKIPPED] perl-File-Path-2.18-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-File-Temp-0.231.100-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-File-stat-1.12-492.fc38.noarch.rpm: Already downloaded
[SKIPPED] perl-Getopt-Long-2.54-1.fc38.noarch.rpm: Already downloaded
[SKIPPED] perl-Getopt-Std-1.13-492.fc38.noarch.rpm: Already downloaded
[SKIPPED] perl-HTTP-Tiny-0.082-1.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-IO-1.50-492.fc38.i686.rpm: Already downloaded
[SKIPPED] perl-IPC-Open3-1.22-492.fc38.noarch.rpm: Already downloaded
[SKIPPED] perl-MIME-Base64-3.16-489.fc37.i686.rpm: Already downloaded
[SKIPPED] perl-POSIX-2.03-492.fc38.i686.rpm: Already downloaded
[SKIPPED] perl-PathTools-3.84-489.fc37.i686.rpm: Already downloaded
[SKIPPED] perl-Pod-Escapes-1.07-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Pod-Perldoc-3.28.01-490.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Pod-Simple-3.43-490.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Pod-Usage-2.03-3.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Scalar-List-Utils-1.63-489.fc38.i686.rpm: Already downloaded
[SKIPPED] perl-SelectSaver-1.02-492.fc38.noarch.rpm: Already downloaded
[SKIPPED] perl-Socket-2.036-1.fc38.i686.rpm: Already downloaded
[SKIPPED] perl-Storable-3.26-489.fc37.i686.rpm: Already downloaded
[SKIPPED] perl-Symbol-1.09-492.fc38.noarch.rpm: Already downloaded
[SKIPPED] perl-Term-ANSIColor-5.01-490.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Term-Cap-1.17-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Text-ParseWords-3.31-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Time-Local-1.300-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-constant-1.33-490.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-if-0.61.000-492.fc38.noarch.rpm: Already downloaded
[SKIPPED] perl-interpreter-5.36.0-492.fc38.i686.rpm: Already downloaded
[SKIPPED] perl-libs-5.36.0-492.fc38.i686.rpm: Already downloaded
[SKIPPED] perl-mro-1.26-492.fc38.i686.rpm: Already downloaded
[SKIPPED] perl-overload-1.35-492.fc38.noarch.rpm: Already downloaded
[SKIPPED] perl-overloading-0.02-492.fc38.noarch.rpm: Already downloaded
[SKIPPED] perl-parent-0.239-1.fc38.noarch.rpm: Already downloaded
[SKIPPED] perl-podlators-5.00-1.fc38.noarch.rpm: Already downloaded
[SKIPPED] perl-vars-1.05-492.fc38.noarch.rpm: Already downloaded
[SKIPPED] python-pip-wheel-22.3.1-1.fc38.noarch.rpm: Already downloaded
[SKIPPED] python-setuptools-wheel-65.5.1-1.fc38.noarch.rpm: Already downloaded
[SKIPPED] python3-3.11.1-1.fc38.i686.rpm: Already downloaded
[SKIPPED] python3-libs-3.11.1-1.fc38.i686.rpm: Already downloaded
(75/254): libassuan-2.5.5-5.fc37.i686.rpm 243 kB/s | 69 kB 00:00
(76/254): libgpg-error-1.46-1.fc38.i686.rpm 10 MB/s | 225 kB 00:00
(77/254): libgcrypt-1.10.1-6.fc38.i686.rpm 1.5 MB/s | 484 kB 00:00
(78/254): libksba-1.6.3-1.fc38.i686.rpm 8.0 MB/s | 161 kB 00:00
(79/254): npth-1.6-10.fc38.i686.rpm 2.1 MB/s | 24 kB 00:00
(80/254): gnupg2-2.3.8-1.fc38.i686.rpm 7.8 MB/s | 2.6 MB 00:00
(81/254): perl-5.36.0-492.fc38.i686.rpm 1.1 MB/s | 16 kB 00:00
(82/254): perl-Algorithm-Diff-1.2010-7.fc37.noa 3.1 MB/s | 47 kB 00:00
(83/254): perl-Archive-Zip-1.68-9.fc37.noarch.r 7.1 MB/s | 106 kB 00:00
(84/254): perl-Attribute-Handlers-1.02-492.fc38 2.2 MB/s | 31 kB 00:00
(85/254): perl-Archive-Tar-2.40-490.fc37.noarch 3.7 MB/s | 71 kB 00:00
(86/254): perl-AutoSplit-5.74-492.fc38.noarch.r 1.9 MB/s | 25 kB 00:00
(87/254): perl-AutoLoader-5.74-492.fc38.noarch. 1.5 MB/s | 24 kB 00:00
(88/254): perl-B-1.83-492.fc38.i686.rpm 13 MB/s | 189 kB 00:00
(89/254): perl-Benchmark-1.23-492.fc38.noarch.r 2.3 MB/s | 30 kB 00:00
(90/254): perl-CPAN-Meta-2.150010-489.fc37.noar 11 MB/s | 176 kB 00:00
(91/254): perl-CPAN-Meta-Requirements-2.140-490 2.2 MB/s | 31 kB 00:00
(92/254): perl-CPAN-2.34-4.fc37.noarch.rpm 16 MB/s | 557 kB 00:00
(93/254): perl-CPAN-Meta-YAML-0.018-490.fc37.no 1.4 MB/s | 26 kB 00:00
(94/254): perl-Compress-Bzip2-2.28-11.fc38.i686 2.7 MB/s | 69 kB 00:00
(95/254): perl-Compress-Raw-Bzip2-2.201-2.fc37. 1.8 MB/s | 35 kB 00:00
(96/254): perl-Compress-Raw-Lzma-2.201-5.fc38.i 2.6 MB/s | 51 kB 00:00
(97/254): perl-Compress-Raw-Zlib-2.202-4.fc38.i 4.0 MB/s | 65 kB 00:00
(98/254): perl-Config-Extensions-0.03-492.fc38. 1.0 MB/s | 15 kB 00:00
(99/254): perl-Config-Perl-V-0.34-1.fc38.noarch 1.1 MB/s | 21 kB 00:00
(100/254): perl-DB_File-1.858-4.fc37.i686.rpm 5.2 MB/s | 82 kB 00:00
(101/254): perl-DBM_Filter-0.06-492.fc38.noarch 1.9 MB/s | 35 kB 00:00
(102/254): perl-Data-Dumper-2.184-490.fc37.i686 3.9 MB/s | 58 kB 00:00
(103/254): perl-Data-Section-0.200007-17.fc37.n 1.7 MB/s | 25 kB 00:00
(104/254): perl-Data-OptList-0.112-5.fc37.noarc 1.6 MB/s | 27 kB 00:00
(105/254): perl-Devel-PPPort-3.68-490.fc37.i686 13 MB/s | 226 kB 00:00
(106/254): perl-Devel-Peek-1.32-492.fc38.i686.r 2.7 MB/s | 36 kB 00:00
(107/254): perl-Devel-SelfStubber-1.06-492.fc38 1.3 MB/s | 17 kB 00:00
(108/254): perl-Devel-Size-0.83-13.fc37.i686.rp 2.0 MB/s | 31 kB 00:00
(109/254): perl-Digest-1.20-489.fc37.noarch.rpm 1.8 MB/s | 26 kB 00:00
(110/254): perl-Digest-MD5-2.58-489.fc37.i686.r 2.5 MB/s | 37 kB 00:00
(111/254): perl-Digest-SHA-6.03-1.fc37.i686.rpm 4.0 MB/s | 62 kB 00:00
(112/254): perl-DirHandle-1.05-492.fc38.noarch. 1.3 MB/s | 15 kB 00:00
(113/254): perl-Digest-SHA1-2.13-37.fc37.i686.r 3.4 MB/s | 57 kB 00:00
(114/254): perl-Dumpvalue-2.27-492.fc38.noarch. 1.7 MB/s | 21 kB 00:00
(115/254): perl-Encode-devel-3.19-492.fc38.i686 3.0 MB/s | 42 kB 00:00
(116/254): perl-Env-1.05-489.fc37.noarch.rpm 1.3 MB/s | 20 kB 00:00
(117/254): perl-ExtUtils-CBuilder-0.280236-490. 3.3 MB/s | 46 kB 00:00
(118/254): perl-ExtUtils-Command-7.64-490.fc37. 1.0 MB/s | 14 kB 00:00
(119/254): perl-ExtUtils-Constant-0.25-492.fc38 3.8 MB/s | 50 kB 00:00
(120/254): perl-ExtUtils-Embed-1.35-492.fc38.no 1.6 MB/s | 21 kB 00:00
(121/254): perl-ExtUtils-Install-2.20-489.fc37. 3.0 MB/s | 44 kB 00:00
(122/254): perl-ExtUtils-MM-Utils-7.64-490.fc37 960 kB/s | 12 kB 00:00
(123/254): perl-ExtUtils-MakeMaker-7.64-490.fc3 18 MB/s | 290 kB 00:00
(124/254): perl-ExtUtils-Manifest-1.73-489.fc37 2.3 MB/s | 34 kB 00:00
(125/254): perl-ExtUtils-Miniperl-1.11-492.fc38 829 kB/s | 18 kB 00:00
(126/254): perl-File-Compare-1.100.700-492.fc38 1.3 MB/s | 16 kB 00:00
(127/254): perl-ExtUtils-ParseXS-3.45-489.fc37. 9.5 MB/s | 182 kB 00:00
(128/254): perl-File-Copy-2.39-492.fc38.noarch. 1.9 MB/s | 23 kB 00:00
(129/254): perl-File-DosGlob-1.12-492.fc38.i686 1.8 MB/s | 23 kB 00:00
(130/254): perl-File-Fetch-1.04-489.fc37.noarch 1.9 MB/s | 31 kB 00:00
(131/254): perl-File-HomeDir-1.006-7.fc37.noarc 3.2 MB/s | 57 kB 00:00
(132/254): perl-File-Which-1.27-6.fc37.noarch.r 1.3 MB/s | 22 kB 00:00
(133/254): perl-FileCache-1.10-492.fc38.noarch. 1.2 MB/s | 18 kB 00:00
(134/254): perl-FileHandle-2.03-492.fc38.noarch 1.5 MB/s | 19 kB 00:00
(135/254): perl-Filter-1.64-1.fc38.i686.rpm 4.6 MB/s | 82 kB 00:00
(136/254): perl-Filter-Simple-0.96-489.fc37.noa 1.7 MB/s | 27 kB 00:00
(137/254): perl-FindBin-1.53-492.fc38.noarch.rp 1.4 MB/s | 17 kB 00:00
(138/254): perl-Hash-Util-0.28-492.fc38.i686.rp 3.0 MB/s | 38 kB 00:00
(139/254): perl-GDBM_File-1.23-492.fc38.i686.rp 3.0 MB/s | 48 kB 00:00
(140/254): perl-Hash-Util-FieldHash-1.26-492.fc 3.1 MB/s | 42 kB 00:00
(141/254): perl-I18N-Collate-1.02-492.fc38.noar 1.3 MB/s | 17 kB 00:00
(142/254): perl-I18N-LangTags-0.45-492.fc38.noa 4.1 MB/s | 57 kB 00:00
(143/254): perl-I18N-Langinfo-0.21-492.fc38.i68 1.9 MB/s | 26 kB 00:00
(144/254): perl-IO-Socket-IP-0.41-490.fc37.noar 2.7 MB/s | 42 kB 00:00
(145/254): perl-IO-Compress-2.201-3.fc37.noarch 15 MB/s | 262 kB 00:00
(146/254): perl-IO-Compress-Lzma-2.201-2.fc37.n 4.1 MB/s | 74 kB 00:00
(147/254): perl-IPC-Cmd-1.04-490.fc37.noarch.rp 2.8 MB/s | 40 kB 00:00
(148/254): perl-IO-Zlib-1.11-489.fc37.noarch.rp 1.1 MB/s | 19 kB 00:00
(149/254): perl-IPC-SysV-2.09-490.fc37.i686.rpm 2.6 MB/s | 42 kB 00:00
(150/254): perl-IPC-System-Simple-1.30-9.fc37.n 2.5 MB/s | 39 kB 00:00
(151/254): perl-Importer-0.026-8.fc38.noarch.rp 2.2 MB/s | 39 kB 00:00
(152/254): perl-JSON-PP-4.15-1.fc38.noarch.rpm 3.6 MB/s | 67 kB 00:00
(153/254): perl-Locale-Maketext-Simple-0.21-492 1.2 MB/s | 21 kB 00:00
(154/254): perl-Locale-Maketext-1.32-1.fc38.noa 4.4 MB/s | 95 kB 00:00
(155/254): perl-MRO-Compat-0.15-4.fc37.noarch.r 1.6 MB/s | 26 kB 00:00
(156/254): perl-Math-BigRat-0.2624-2.fc37.noarc 3.0 MB/s | 42 kB 00:00
(157/254): perl-Math-BigInt-1.9998.37-2.fc37.no 12 MB/s | 201 kB 00:00
(158/254): perl-Math-BigInt-FastCalc-0.501.300- 1.1 MB/s | 29 kB 00:00
(159/254): perl-Math-Complex-1.59-492.fc38.noar 2.7 MB/s | 50 kB 00:00
(160/254): perl-Memoize-1.03-492.fc38.noarch.rp 3.2 MB/s | 60 kB 00:00
(161/254): perl-Module-Build-0.42.32-1.fc38.noa 12 MB/s | 236 kB 00:00
(162/254): perl-Module-CoreList-5.20221220-1.fc 5.5 MB/s | 84 kB 00:00
(163/254): perl-Module-CoreList-tools-5.2022122 1.3 MB/s | 18 kB 00:00
(164/254): perl-Module-Load-0.36-489.fc37.noarc 1.3 MB/s | 17 kB 00:00
(165/254): perl-Module-Loaded-0.08-492.fc38.noa 1.3 MB/s | 16 kB 00:00
(166/254): perl-Module-Load-Conditional-0.74-48 1.6 MB/s | 22 kB 00:00
(167/254): perl-Module-Metadata-1.000037-489.fc 1.8 MB/s | 35 kB 00:00
(168/254): perl-NDBM_File-1.15-492.fc38.i686.rp 1.6 MB/s | 26 kB 00:00
(169/254): perl-Module-Signature-0.88-4.fc37.no 4.3 MB/s | 83 kB 00:00
(170/254): perl-NEXT-0.69-492.fc38.noarch.rpm 1.8 MB/s | 24 kB 00:00
(171/254): perl-Net-1.03-492.fc38.noarch.rpm 1.9 MB/s | 28 kB 00:00
(172/254): perl-Net-Ping-2.75-2.fc38.noarch.rpm 3.0 MB/s | 50 kB 00:00
(173/254): perl-ODBM_File-1.17-492.fc38.i686.rp 2.0 MB/s | 26 kB 00:00
(174/254): perl-Object-HashBase-0.009-11.fc38.n 1.9 MB/s | 25 kB 00:00
(175/254): perl-Opcode-1.57-492.fc38.i686.rpm 2.3 MB/s | 41 kB 00:00
(176/254): perl-Package-Generator-1.106-26.fc37 1.3 MB/s | 23 kB 00:00
(177/254): perl-Params-Check-0.38-489.fc37.noar 1.4 MB/s | 22 kB 00:00
(178/254): perl-Params-Util-1.102-9.fc38.i686.r 1.8 MB/s | 33 kB 00:00
(179/254): perl-Perl-OSType-1.010-490.fc37.noar 1.7 MB/s | 23 kB 00:00
(180/254): perl-PerlIO-via-QuotedPrint-0.10-3.f 1.3 MB/s | 22 kB 00:00
(181/254): perl-Pod-Functions-1.14-492.fc38.noa 1.4 MB/s | 17 kB 00:00
(182/254): perl-Pod-Checker-1.75-3.fc37.noarch. 1.9 MB/s | 32 kB 00:00
(183/254): perl-Pod-Html-1.33-492.fc38.noarch.r 1.9 MB/s | 34 kB 00:00
(184/254): perl-Safe-2.43-492.fc38.noarch.rpm 2.0 MB/s | 28 kB 00:00
(185/254): perl-Search-Dict-1.07-492.fc38.noarc 1.2 MB/s | 16 kB 00:00
(186/254): perl-SelfLoader-1.26-492.fc38.noarch 1.9 MB/s | 25 kB 00:00
(187/254): perl-Software-License-0.104002-2.fc3 8.9 MB/s | 133 kB 00:00
(188/254): perl-Sub-Exporter-0.988-5.fc37.noarc 4.8 MB/s | 72 kB 00:00
(189/254): perl-Sub-Install-0.928-33.fc37.noarc 1.7 MB/s | 22 kB 00:00
(190/254): perl-Sys-Hostname-1.24-492.fc38.i686 1.6 MB/s | 20 kB 00:00
(191/254): perl-Sys-Syslog-0.36-490.fc37.i686.r 3.2 MB/s | 47 kB 00:00
(192/254): perl-Term-Complete-1.403-492.fc38.no 1.0 MB/s | 16 kB 00:00
(193/254): perl-Term-ReadLine-1.17-492.fc38.noa 1.6 MB/s | 22 kB 00:00
(194/254): perl-Term-Table-0.016-5.fc38.noarch. 2.3 MB/s | 34 kB 00:00
(195/254): perl-Test-1.31-492.fc38.noarch.rpm 2.5 MB/s | 32 kB 00:00
(196/254): perl-Test-Harness-3.44-490.fc37.noar 12 MB/s | 268 kB 00:00
(197/254): perl-Text-Abbrev-1.02-492.fc38.noarc 1.0 MB/s | 15 kB 00:00
(198/254): perl-Test-Simple-1.302191-2.fc37.noa 24 MB/s | 525 kB 00:00
(199/254): perl-Text-Balanced-2.06-2.fc37.noarc 2.6 MB/s | 49 kB 00:00
(200/254): perl-Text-Diff-1.45-16.fc37.noarch.r 2.2 MB/s | 41 kB 00:00
(201/254): perl-Text-Glob-0.11-19.fc38.noarch.r 772 kB/s | 13 kB 00:00
(202/254): perl-Thread-Queue-3.14-489.fc37.noar 1.6 MB/s | 21 kB 00:00
(203/254): perl-Text-Template-1.61-1.fc38.noarc 3.4 MB/s | 60 kB 00:00
(204/254): perl-Thread-3.05-492.fc38.noarch.rpm 1.2 MB/s | 21 kB 00:00
(205/254): perl-Thread-Semaphore-2.13-492.fc38. 1.4 MB/s | 19 kB 00:00
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(207/254): perl-Tie-File-1.06-492.fc38.noarch.r 3.1 MB/s | 46 kB 00:00
(208/254): perl-Tie-Memoize-1.1-492.fc38.noarch 1.3 MB/s | 17 kB 00:00
(209/254): perl-Tie-RefHash-1.40-489.fc37.noarc 1.7 MB/s | 23 kB 00:00
(210/254): perl-Time-1.03-492.fc38.noarch.rpm 1.7 MB/s | 22 kB 00:00
(211/254): perl-Time-HiRes-1.9770-489.fc37.i686 3.3 MB/s | 59 kB 00:00
(212/254): perl-Time-Piece-1.3401-492.fc38.i686 2.7 MB/s | 44 kB 00:00
(213/254): perl-URI-5.17-1.fc38.noarch.rpm 6.3 MB/s | 111 kB 00:00
(214/254): perl-Unicode-Normalize-1.31-489.fc37 5.8 MB/s | 84 kB 00:00
(215/254): perl-Unicode-UCD-0.78-492.fc38.noarc 5.8 MB/s | 82 kB 00:00
(216/254): perl-User-pwent-1.03-492.fc38.noarch 1.5 MB/s | 24 kB 00:00
(217/254): perl-Unicode-Collate-1.31-489.fc37.i 20 MB/s | 668 kB 00:00
(218/254): perl-autodie-2.34-490.fc37.noarch.rp 6.0 MB/s | 94 kB 00:00
(219/254): perl-autouse-1.11-492.fc38.noarch.rp 1.3 MB/s | 17 kB 00:00
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(221/254): perl-bignum-0.66-5.fc37.noarch.rpm 2.9 MB/s | 50 kB 00:00
(222/254): perl-blib-1.07-492.fc38.noarch.rpm 1.2 MB/s | 15 kB 00:00
(223/254): perl-debugger-1.60-492.fc38.noarch.r 9.7 MB/s | 137 kB 00:00
(224/254): perl-deprecate-0.04-492.fc38.noarch. 1.5 MB/s | 18 kB 00:00
(225/254): perl-diagnostics-1.39-492.fc38.noarc 11 MB/s | 214 kB 00:00
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(227/254): perl-encoding-3.00-492.fc38.i686.rpm 4.6 MB/s | 63 kB 00:00
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(230/254): perl-fields-2.27-492.fc38.noarch.rpm 1.3 MB/s | 19 kB 00:00
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(233/254): perl-less-0.03-492.fc38.noarch.rpm 1.3 MB/s | 16 kB 00:00
(234/254): perl-lib-0.65-492.fc38.i686.rpm 1.4 MB/s | 18 kB 00:00
(235/254): perl-libnet-3.14-490.fc37.noarch.rpm 7.3 MB/s | 126 kB 00:00
(236/254): perl-libnetcfg-5.36.0-492.fc38.noarc 1.4 MB/s | 19 kB 00:00
(237/254): perl-doc-5.36.0-492.fc38.noarch.rpm 42 MB/s | 4.7 MB 00:00
(238/254): perl-locale-1.10-492.fc38.noarch.rpm 968 kB/s | 17 kB 00:00
(239/254): perl-local-lib-2.000029-3.fc37.noarc 3.1 MB/s | 67 kB 00:00
(240/254): perl-meta-notation-5.36.0-492.fc38.n 1.0 MB/s | 13 kB 00:00
(241/254): perl-macros-5.36.0-492.fc38.noarch.r 1.1 MB/s | 14 kB 00:00
(242/254): perl-open-1.13-492.fc38.noarch.rpm 1.5 MB/s | 20 kB 00:00
(243/254): perl-sigtrap-1.10-492.fc38.noarch.rp 1.4 MB/s | 19 kB 00:00
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(245/254): perl-perlfaq-5.20210520-489.fc37.noa 15 MB/s | 374 kB 00:00
(246/254): perl-sort-2.05-492.fc38.noarch.rpm 1.3 MB/s | 16 kB 00:00
(247/254): perl-subs-1.04-492.fc38.noarch.rpm 1.2 MB/s | 15 kB 00:00
(248/254): perl-threads-2.27-489.fc37.i686.rpm 5.1 MB/s | 59 kB 00:00
(249/254): perl-threads-shared-1.64-489.fc37.i6 3.9 MB/s | 45 kB 00:00
(250/254): perl-utils-5.36.0-492.fc38.noarch.rp 4.2 MB/s | 58 kB 00:00
(251/254): perl-version-0.99.29-490.fc37.i686.r 4.4 MB/s | 63 kB 00:00
(252/254): perl-vmsish-1.04-492.fc38.noarch.rpm 1.4 MB/s | 17 kB 00:00
(253/254): python3-pyparsing-3.0.9-2.fc37.noarc 18 MB/s | 255 kB 00:00
(254/254): systemtap-sdt-devel-4.8~pre16650659g 4.7 MB/s | 73 kB 00:00
--------------------------------------------------------------------------------
Total 14 MB/s | 19 MB 00:01
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Preparing : 1/1
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glibc-devel-2.36.9000-19.fc38.i686
glibc-headers-x86-2.36.9000-19.fc38.noarch
gnupg2-2.3.8-1.fc38.i686
gnutls-3.7.8-9.fc38.i686
groff-base-1.22.4-10.fc37.i686
guile22-2.2.7-6.fc37.i686
kernel-headers-6.1.0-1.fc38.i686
libasan-13.0.0-0.4.fc38.i686
libassuan-2.5.5-5.fc37.i686
libatomic-13.0.0-0.4.fc38.i686
libb2-0.98.1-7.fc37.i686
libgcrypt-1.10.1-6.fc38.i686
libgpg-error-1.46-1.fc38.i686
libksba-1.6.3-1.fc38.i686
libmpc-1.2.1-5.fc37.i686
libstdc++-devel-13.0.0-0.4.fc38.i686
libtool-ltdl-2.4.7-3.0.1.fc38.i686
libubsan-13.0.0-0.4.fc38.i686
libxcrypt-devel-4.4.33-5.fc38.i686
make-1:4.3-11.fc37.i686
mpdecimal-2.5.1-4.fc37.i686
ncurses-6.3-5.20221126.fc38.i686
npth-1.6-10.fc38.i686
perl-4:5.36.0-492.fc38.i686
perl-Algorithm-Diff-1.2010-7.fc37.noarch
perl-Archive-Tar-2.40-490.fc37.noarch
perl-Archive-Zip-1.68-9.fc37.noarch
perl-Attribute-Handlers-1.02-492.fc38.noarch
perl-AutoLoader-5.74-492.fc38.noarch
perl-AutoSplit-5.74-492.fc38.noarch
perl-B-1.83-492.fc38.i686
perl-Benchmark-1.23-492.fc38.noarch
perl-CPAN-2.34-4.fc37.noarch
perl-CPAN-Meta-2.150010-489.fc37.noarch
perl-CPAN-Meta-Requirements-2.140-490.fc37.noarch
perl-CPAN-Meta-YAML-0.018-490.fc37.noarch
perl-Carp-1.52-489.fc37.noarch
perl-Class-Struct-0.66-492.fc38.noarch
perl-Compress-Bzip2-2.28-11.fc38.i686
perl-Compress-Raw-Bzip2-2.201-2.fc37.i686
perl-Compress-Raw-Lzma-2.201-5.fc38.i686
perl-Compress-Raw-Zlib-2.202-4.fc38.i686
perl-Config-Extensions-0.03-492.fc38.noarch
perl-Config-Perl-V-0.34-1.fc38.noarch
perl-DBM_Filter-0.06-492.fc38.noarch
perl-DB_File-1.858-4.fc37.i686
perl-Data-Dumper-2.184-490.fc37.i686
perl-Data-OptList-0.112-5.fc37.noarch
perl-Data-Section-0.200007-17.fc37.noarch
perl-Devel-PPPort-3.68-490.fc37.i686
perl-Devel-Peek-1.32-492.fc38.i686
perl-Devel-SelfStubber-1.06-492.fc38.noarch
perl-Devel-Size-0.83-13.fc37.i686
perl-Digest-1.20-489.fc37.noarch
perl-Digest-MD5-2.58-489.fc37.i686
perl-Digest-SHA-1:6.03-1.fc37.i686
perl-Digest-SHA1-2.13-37.fc37.i686
perl-DirHandle-1.05-492.fc38.noarch
perl-Dumpvalue-2.27-492.fc38.noarch
perl-DynaLoader-1.52-492.fc38.i686
perl-Encode-4:3.19-492.fc38.i686
perl-Encode-devel-4:3.19-492.fc38.i686
perl-English-1.11-492.fc38.noarch
perl-Env-1.05-489.fc37.noarch
perl-Errno-1.36-492.fc38.i686
perl-Exporter-5.77-489.fc37.noarch
perl-ExtUtils-CBuilder-1:0.280236-490.fc38.noarch
perl-ExtUtils-Command-2:7.64-490.fc37.noarch
perl-ExtUtils-Constant-0.25-492.fc38.noarch
perl-ExtUtils-Embed-1.35-492.fc38.noarch
perl-ExtUtils-Install-2.20-489.fc37.noarch
perl-ExtUtils-MM-Utils-2:7.64-490.fc37.noarch
perl-ExtUtils-MakeMaker-2:7.64-490.fc37.noarch
perl-ExtUtils-Manifest-1:1.73-489.fc37.noarch
perl-ExtUtils-Miniperl-1.11-492.fc38.noarch
perl-ExtUtils-ParseXS-1:3.45-489.fc37.noarch
perl-Fcntl-1.15-492.fc38.i686
perl-File-Basename-2.85-492.fc38.noarch
perl-File-Compare-1.100.700-492.fc38.noarch
perl-File-Copy-2.39-492.fc38.noarch
perl-File-DosGlob-1.12-492.fc38.i686
perl-File-Fetch-1.04-489.fc37.noarch
perl-File-Find-1.40-492.fc38.noarch
perl-File-HomeDir-1.006-7.fc37.noarch
perl-File-Path-2.18-489.fc37.noarch
perl-File-Temp-1:0.231.100-489.fc37.noarch
perl-File-Which-1.27-6.fc37.noarch
perl-File-stat-1.12-492.fc38.noarch
perl-FileCache-1.10-492.fc38.noarch
perl-FileHandle-2.03-492.fc38.noarch
perl-Filter-2:1.64-1.fc38.i686
perl-Filter-Simple-0.96-489.fc37.noarch
perl-FindBin-1.53-492.fc38.noarch
perl-GDBM_File-1:1.23-492.fc38.i686
perl-Getopt-Long-1:2.54-1.fc38.noarch
perl-Getopt-Std-1.13-492.fc38.noarch
perl-HTTP-Tiny-0.082-1.fc37.noarch
perl-Hash-Util-0.28-492.fc38.i686
perl-Hash-Util-FieldHash-1.26-492.fc38.i686
perl-I18N-Collate-1.02-492.fc38.noarch
perl-I18N-LangTags-0.45-492.fc38.noarch
perl-I18N-Langinfo-0.21-492.fc38.i686
perl-IO-1.50-492.fc38.i686
perl-IO-Compress-2.201-3.fc37.noarch
perl-IO-Compress-Lzma-2.201-2.fc37.noarch
perl-IO-Socket-IP-0.41-490.fc37.noarch
perl-IO-Zlib-1:1.11-489.fc37.noarch
perl-IPC-Cmd-2:1.04-490.fc37.noarch
perl-IPC-Open3-1.22-492.fc38.noarch
perl-IPC-SysV-2.09-490.fc37.i686
perl-IPC-System-Simple-1.30-9.fc37.noarch
perl-Importer-0.026-8.fc38.noarch
perl-JSON-PP-1:4.15-1.fc38.noarch
perl-Locale-Maketext-1.32-1.fc38.noarch
perl-Locale-Maketext-Simple-1:0.21-492.fc38.noarch
perl-MIME-Base64-3.16-489.fc37.i686
perl-MRO-Compat-0.15-4.fc37.noarch
perl-Math-BigInt-1:1.9998.37-2.fc37.noarch
perl-Math-BigInt-FastCalc-0.501.300-3.fc37.i686
perl-Math-BigRat-0.2624-2.fc37.noarch
perl-Math-Complex-1.59-492.fc38.noarch
perl-Memoize-1.03-492.fc38.noarch
perl-Module-Build-2:0.42.32-1.fc38.noarch
perl-Module-CoreList-1:5.20221220-1.fc38.noarch
perl-Module-CoreList-tools-1:5.20221220-1.fc38.noarch
perl-Module-Load-1:0.36-489.fc37.noarch
perl-Module-Load-Conditional-0.74-489.fc37.noarch
perl-Module-Loaded-1:0.08-492.fc38.noarch
perl-Module-Metadata-1.000037-489.fc37.noarch
perl-Module-Signature-0.88-4.fc37.noarch
perl-NDBM_File-1.15-492.fc38.i686
perl-NEXT-0.69-492.fc38.noarch
perl-Net-1.03-492.fc38.noarch
perl-Net-Ping-2.75-2.fc38.noarch
perl-ODBM_File-1.17-492.fc38.i686
perl-Object-HashBase-0.009-11.fc38.noarch
perl-Opcode-1.57-492.fc38.i686
perl-POSIX-2.03-492.fc38.i686
perl-Package-Generator-1.106-26.fc37.noarch
perl-Params-Check-1:0.38-489.fc37.noarch
perl-Params-Util-1.102-9.fc38.i686
perl-PathTools-3.84-489.fc37.i686
perl-Perl-OSType-1.010-490.fc37.noarch
perl-PerlIO-via-QuotedPrint-0.10-3.fc37.noarch
perl-Pod-Checker-4:1.75-3.fc37.noarch
perl-Pod-Escapes-1:1.07-489.fc37.noarch
perl-Pod-Functions-1.14-492.fc38.noarch
perl-Pod-Html-1.33-492.fc38.noarch
perl-Pod-Perldoc-3.28.01-490.fc37.noarch
perl-Pod-Simple-1:3.43-490.fc37.noarch
perl-Pod-Usage-4:2.03-3.fc37.noarch
perl-Safe-2.43-492.fc38.noarch
perl-Scalar-List-Utils-5:1.63-489.fc38.i686
perl-Search-Dict-1.07-492.fc38.noarch
perl-SelectSaver-1.02-492.fc38.noarch
perl-SelfLoader-1.26-492.fc38.noarch
perl-Socket-4:2.036-1.fc38.i686
perl-Software-License-0.104002-2.fc37.noarch
perl-Storable-1:3.26-489.fc37.i686
perl-Sub-Exporter-0.988-5.fc37.noarch
perl-Sub-Install-0.928-33.fc37.noarch
perl-Symbol-1.09-492.fc38.noarch
perl-Sys-Hostname-1.24-492.fc38.i686
perl-Sys-Syslog-0.36-490.fc37.i686
perl-Term-ANSIColor-5.01-490.fc37.noarch
perl-Term-Cap-1.17-489.fc37.noarch
perl-Term-Complete-1.403-492.fc38.noarch
perl-Term-ReadLine-1.17-492.fc38.noarch
perl-Term-Table-0.016-5.fc38.noarch
perl-Test-1.31-492.fc38.noarch
perl-Test-Harness-1:3.44-490.fc37.noarch
perl-Test-Simple-3:1.302191-2.fc37.noarch
perl-Text-Abbrev-1.02-492.fc38.noarch
perl-Text-Balanced-2.06-2.fc37.noarch
perl-Text-Diff-1.45-16.fc37.noarch
perl-Text-Glob-0.11-19.fc38.noarch
perl-Text-ParseWords-3.31-489.fc37.noarch
perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch
perl-Text-Template-1.61-1.fc38.noarch
perl-Thread-3.05-492.fc38.noarch
perl-Thread-Queue-3.14-489.fc37.noarch
perl-Thread-Semaphore-2.13-492.fc38.noarch
perl-Tie-4.6-492.fc38.noarch
perl-Tie-File-1.06-492.fc38.noarch
perl-Tie-Memoize-1.1-492.fc38.noarch
perl-Tie-RefHash-1.40-489.fc37.noarch
perl-Time-1.03-492.fc38.noarch
perl-Time-HiRes-4:1.9770-489.fc37.i686
perl-Time-Local-2:1.300-489.fc37.noarch
perl-Time-Piece-1.3401-492.fc38.i686
perl-URI-5.17-1.fc38.noarch
perl-Unicode-Collate-1.31-489.fc37.i686
perl-Unicode-Normalize-1.31-489.fc37.i686
perl-Unicode-UCD-0.78-492.fc38.noarch
perl-User-pwent-1.03-492.fc38.noarch
perl-autodie-2.34-490.fc37.noarch
perl-autouse-1.11-492.fc38.noarch
perl-base-2.27-492.fc38.noarch
perl-bignum-0.66-5.fc37.noarch
perl-blib-1.07-492.fc38.noarch
perl-constant-1.33-490.fc37.noarch
perl-debugger-1.60-492.fc38.noarch
perl-deprecate-0.04-492.fc38.noarch
perl-devel-4:5.36.0-492.fc38.i686
perl-diagnostics-1.39-492.fc38.noarch
perl-doc-5.36.0-492.fc38.noarch
perl-encoding-4:3.00-492.fc38.i686
perl-encoding-warnings-0.13-492.fc38.noarch
perl-experimental-0.030-1.fc38.noarch
perl-fields-2.27-492.fc38.noarch
perl-filetest-1.03-492.fc38.noarch
perl-if-0.61.000-492.fc38.noarch
perl-inc-latest-2:0.500-23.fc37.noarch
perl-interpreter-4:5.36.0-492.fc38.i686
perl-less-0.03-492.fc38.noarch
perl-lib-0.65-492.fc38.i686
perl-libnet-3.14-490.fc37.noarch
perl-libnetcfg-4:5.36.0-492.fc38.noarch
perl-libs-4:5.36.0-492.fc38.i686
perl-local-lib-2.000029-3.fc37.noarch
perl-locale-1.10-492.fc38.noarch
perl-macros-4:5.36.0-492.fc38.noarch
perl-meta-notation-5.36.0-492.fc38.noarch
perl-mro-1.26-492.fc38.i686
perl-open-1.13-492.fc38.noarch
perl-overload-1.35-492.fc38.noarch
perl-overloading-0.02-492.fc38.noarch
perl-parent-1:0.239-1.fc38.noarch
perl-perlfaq-5.20210520-489.fc37.noarch
perl-ph-5.36.0-492.fc38.i686
perl-podlators-1:5.00-1.fc38.noarch
perl-sigtrap-1.10-492.fc38.noarch
perl-sort-2.05-492.fc38.noarch
perl-subs-1.04-492.fc38.noarch
perl-threads-1:2.27-489.fc37.i686
perl-threads-shared-1.64-489.fc37.i686
perl-utils-5.36.0-492.fc38.noarch
perl-vars-1.05-492.fc38.noarch
perl-version-8:0.99.29-490.fc37.i686
perl-vmsish-1.04-492.fc38.noarch
python-pip-wheel-22.3.1-1.fc38.noarch
python-setuptools-wheel-65.5.1-1.fc38.noarch
python3-3.11.1-1.fc38.i686
python3-libs-3.11.1-1.fc38.i686
python3-pyparsing-3.0.9-2.fc37.noarch
systemtap-sdt-devel-4.8~pre16650659g6a096a7d-1.fc38.i686
Complete!
Finish: build setup for hmmer-3.3.2-2.fc38.src.rpm
Start: rpmbuild hmmer-3.3.2-2.fc38.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1659312000
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.wbJfII
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf hmmer-3.3.2
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/hmmer-3.3.2.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd hmmer-3.3.2
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.79tQFU
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd hmmer-3.3.2
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup 2020-11-26 21:19:58.000000000 +0000
+++ ./configure 2022-12-28 22:56:06.726037205 +0000
@@ -1898,7 +1898,7 @@
#ifdef __cplusplus
extern "C"
#endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./easel/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./easel/config.sub
++ basename ./easel/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./easel/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './easel/config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./easel/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./easel/config.guess
++ basename ./easel/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./easel/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './easel/config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config.sub
++ basename ./config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config.guess
++ basename ./config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
+ ./configure --build=i686-redhat-linux-gnu --host=i686-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info
configure: WARNING: unrecognized options: --disable-dependency-tracking
configure: Configuring HMMER3 for your system.
checking build system type... i686-redhat-linux-gnu
checking host system type... i686-redhat-linux-gnu
checking whether to compile using MPI... no
checking for i686-redhat-linux-gnu-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for gcc option to accept ISO C99... none needed
checking for gcc option to accept ISO Standard C... (cached) none needed
checking how to run the C preprocessor... gcc -E
checking for a BSD-compatible install... /usr/bin/install -c
checking for i686-redhat-linux-gnu-strip... no
checking for strip... strip
checking for i686-redhat-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking for ar... /usr/bin/ar
checking whether ln -s works... yes
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking whether gcc is Clang... no
checking whether pthreads work with -pthread... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking whether more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
checking whether gcc can compile our Altivec/VMX code... no
checking whether gcc can compile our SSE code... yes
configure: Activating Intel/AMD SSE vector DP implementation
checking whether _MM_SET_FLUSH_ZERO_MODE is supported... yes
checking compiler support --start-group... yes
checking for gzip... /usr/bin/gzip
checking for python3... yes
checking for library containing clock_gettime... none required
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking endian.h usability... yes
checking endian.h presence... yes
checking for endian.h... yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/types.h... (cached) yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for sys/sysctl.h... no
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking for off_t... yes
checking whether byte ordering is bigendian... no
checking for __attribute__((noreturn))... yes
checking for __attribute__((format))... yes
checking for mkstemp... yes
checking for popen... yes
checking for putenv... yes
checking for strcasecmp... yes
checking for strsep... yes
checking for times... yes
checking for getpid... yes
checking for sysctl... no
checking for sysconf... yes
checking for getcwd... yes
checking for chmod... yes
checking for stat... yes
checking for fstat... yes
checking for erfc... no
checking for library containing ntohs... none required
checking for library containing ntohl... none required
checking for library containing htons... none required
checking for library containing htonl... none required
checking for library containing socket... none required
checking for library containing inet_pton... none required
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating testsuite/Makefile
config.status: creating profmark/Makefile
config.status: creating src/impl_sse/Makefile
config.status: creating documentation/Makefile
config.status: creating documentation/man/Makefile
config.status: creating documentation/userguide/Makefile
config.status: creating documentation/userguide/inclusions/Makefile
config.status: creating libdivsufsort/Makefile
config.status: creating easel/Makefile
config.status: creating easel/miniapps/Makefile
config.status: creating easel/testsuite/Makefile
config.status: creating easel/documentation/Makefile
config.status: creating documentation/userguide/titlepage.tex
config.status: creating documentation/userguide/titlepage_daemon.tex
config.status: creating documentation/userguide/copyright.tex
config.status: creating documentation/man/alimask.man
config.status: creating documentation/man/hmmalign.man
config.status: creating documentation/man/hmmbuild.man
config.status: creating documentation/man/hmmc2.man
config.status: creating documentation/man/hmmconvert.man
config.status: creating documentation/man/hmmemit.man
config.status: creating documentation/man/hmmer.man
config.status: creating documentation/man/hmmfetch.man
config.status: creating documentation/man/hmmlogo.man
config.status: creating documentation/man/hmmpgmd.man
config.status: creating documentation/man/hmmpgmd_shard.man
config.status: creating documentation/man/hmmpress.man
config.status: creating documentation/man/hmmscan.man
config.status: creating documentation/man/hmmsearch.man
config.status: creating documentation/man/hmmsim.man
config.status: creating documentation/man/hmmstat.man
config.status: creating documentation/man/jackhmmer.man
config.status: creating documentation/man/makehmmerdb.man
config.status: creating documentation/man/nhmmer.man
config.status: creating documentation/man/nhmmscan.man
config.status: creating documentation/man/phmmer.man
config.status: creating easel/miniapps/esl-afetch.man
config.status: creating easel/miniapps/esl-alimanip.man
config.status: creating easel/miniapps/esl-alimap.man
config.status: creating easel/miniapps/esl-alimask.man
config.status: creating easel/miniapps/esl-alimerge.man
config.status: creating easel/miniapps/esl-alipid.man
config.status: creating easel/miniapps/esl-alirev.man
config.status: creating easel/miniapps/esl-alistat.man
config.status: creating easel/miniapps/esl-compalign.man
config.status: creating easel/miniapps/esl-compstruct.man
config.status: creating easel/miniapps/esl-construct.man
config.status: creating easel/miniapps/esl-histplot.man
config.status: creating easel/miniapps/esl-mask.man
config.status: creating easel/miniapps/esl-mixdchlet.man
config.status: creating easel/miniapps/esl-reformat.man
config.status: creating easel/miniapps/esl-selectn.man
config.status: creating easel/miniapps/esl-seqrange.man
config.status: creating easel/miniapps/esl-seqstat.man
config.status: creating easel/miniapps/esl-sfetch.man
config.status: creating easel/miniapps/esl-shuffle.man
config.status: creating easel/miniapps/esl-ssdraw.man
config.status: creating easel/miniapps/esl-translate.man
config.status: creating easel/miniapps/esl-weight.man
config.status: creating easel/decoy_config.h
config.status: creating src/p7_config.h
config.status: creating easel/esl_config.h
config.status: creating libdivsufsort/divsufsort.h
config.status: linking src/impl_sse to src/impl
configure: WARNING: unrecognized options: --disable-dependency-tracking
HMMER configuration:
compiler: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -pthread
host: i686-redhat-linux-gnu
linker: -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes
libraries:
DP implementation: sse
Now do 'make' to build HMMER, and optionally:
'make check' to run self tests,
'make install' to install programs and man pages,
'(cd easel; make install)' to install Easel tools.
+ make -j2
SUBDIR easel
CC easel.o
CC esl_alloc.o
CC esl_alphabet.o
easel.c: In function 'esl_fail':
easel.c:79:12: warning: 'ap' may be used uninitialized [-Wmaybe-uninitialized]
79 | else vsyslog(LOG_ERR, format, ap); // SRE: TODO: check this.
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
easel.c:69:15: note: 'ap' was declared here
69 | va_list ap;
| ^~
easel.c: In function 'esl_exception':
easel.c:157:12: warning: 'argp' may be used uninitialized [-Wmaybe-uninitialized]
157 | else vsyslog(LOG_ERR, format, argp);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
easel.c:131:11: note: 'argp' was declared here
131 | va_list argp;
| ^~~~
easel.c: In function 'esl_fatal':
easel.c:308:8: warning: 'argp' may be used uninitialized [-Wmaybe-uninitialized]
308 | else vsyslog(LOG_ERR, format, argp);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
easel.c:295:11: note: 'argp' was declared here
295 | va_list argp;
| ^~~~
CC esl_arr2.o
CC esl_arr3.o
CC esl_bitfield.o
CC esl_buffer.o
CC esl_cluster.o
CC esl_composition.o
CC esl_cpu.o
CC esl_dirichlet.o
CC esl_distance.o
CC esl_dmatrix.o
CC esl_dsqdata.o
CC esl_exponential.o
CC esl_fileparser.o
CC esl_gamma.o
CC esl_gencode.o
CC esl_getopts.o
CC esl_gev.o
CC esl_graph.o
CC esl_gumbel.o
CC esl_heap.o
CC esl_histogram.o
CC esl_hmm.o
CC esl_huffman.o
CC esl_hyperexp.o
CC esl_json.o
esl_json.c: In function 'esl_json_Validate':
esl_json.c:752:33: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
752 | case eslJSON_BOOLEAN: if (! esl_memstrcmp(bf->mem + pos1, pos2-pos1+1, "true") &&
| ^~
esl_json.c:753:167: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
753 | ! esl_memstrcmp(bf->mem + pos1, pos2-pos1+1, "false")) ESL_FAIL(eslFAIL, errbuf, "boolean isn't a boolean, tok %d", i); break;
| ^~~~~
CC esl_keyhash.o
CC esl_matrixops.o
CC esl_mem.o
CC esl_minimizer.o
esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent':
esl_minimizer.c:243:23: warning: 'fx' may be used uninitialized [-Wmaybe-uninitialized]
243 | if (opt_fx) *opt_fx = fx;
| ~~~~~~~~^~~~
esl_minimizer.c:119:10: note: 'fx' was declared here
119 | double fx;
| ^~
In function 'brent',
inlined from 'esl_min_ConjugateGradientDescent' at esl_minimizer.c:192:7:
esl_minimizer.c:720:21: warning: 'ax' may be used uninitialized [-Wmaybe-uninitialized]
720 | m = 0.5 * (a+b);
| ~~^~~
esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent':
esl_minimizer.c:118:10: note: 'ax' was declared here
118 | double ax,bx,cx;
| ^~
In function 'brent',
inlined from 'esl_min_ConjugateGradientDescent' at esl_minimizer.c:192:7:
esl_minimizer.c:720:21: warning: 'cx' may be used uninitialized [-Wmaybe-uninitialized]
720 | m = 0.5 * (a+b);
| ~~^~~
esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent':
esl_minimizer.c:118:16: note: 'cx' was declared here
118 | double ax,bx,cx;
| ^~
CC esl_mixdchlet.o
CC esl_mixgev.o
CC esl_mpi.o
CC esl_msa.o
CC esl_msacluster.o
CC esl_msafile.o
CC esl_msafile2.o
CC esl_msafile_a2m.o
CC esl_msafile_afa.o
CC esl_msafile_clustal.o
esl_msafile_clustal.c: In function 'esl_msafile_clustal_Read':
esl_msafile_clustal.c:247:12: warning: 'block_seq_start' may be used uninitialized [-Wmaybe-uninitialized]
247 | if (seq_start != block_seq_start) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence start is misaligned");
| ^
esl_msafile_clustal.c:203:13: note: 'block_seq_start' was declared here
203 | esl_pos_t block_seq_start, block_seq_len;
| ^~~~~~~~~~~~~~~
esl_msafile_clustal.c:248:12: warning: 'block_seq_len' may be used uninitialized [-Wmaybe-uninitialized]
248 | if (seq_len != block_seq_len) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence end is misaligned");
| ^
esl_msafile_clustal.c:203:30: note: 'block_seq_len' was declared here
203 | esl_pos_t block_seq_start, block_seq_len;
| ^~~~~~~~~~~~~
CC esl_msafile_phylip.o
CC esl_msafile_psiblast.o
esl_msafile_psiblast.c: In function 'esl_msafile_psiblast_Read':
esl_msafile_psiblast.c:228:12: warning: 'block_seq_start' may be used uninitialized [-Wmaybe-uninitialized]
228 | if (seq_start != block_seq_start) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence start is misaligned");
| ^
esl_msafile_psiblast.c:195:13: note: 'block_seq_start' was declared here
195 | esl_pos_t block_seq_start, block_seq_len;
| ^~~~~~~~~~~~~~~
esl_msafile_psiblast.c:229:12: warning: 'block_seq_len' may be used uninitialized [-Wmaybe-uninitialized]
229 | if (seq_len != block_seq_len) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence end is misaligned");
| ^
esl_msafile_psiblast.c:195:30: note: 'block_seq_len' was declared here
195 | esl_pos_t block_seq_start, block_seq_len;
| ^~~~~~~~~~~~~
In function 'phylip_check_interleaved',
inlined from 'esl_msafile_phylip_CheckFileFormat' at esl_msafile_phylip.c:389:13:
esl_msafile_phylip.c:739:16: warning: 'nres1' may be used uninitialized [-Wmaybe-uninitialized]
739 | if (nres1+nres2 == alen) break;
| ~~~~~^~~~~~
esl_msafile_phylip.c: In function 'esl_msafile_phylip_CheckFileFormat':
esl_msafile_phylip.c:687:13: note: 'nres1' was declared here
687 | int nres1;
| ^~~~~
In function 'phylip_deduce_namewidth',
inlined from 'phylip_check_interleaved' at esl_msafile_phylip.c:747:22,
inlined from 'esl_msafile_phylip_CheckFileFormat' at esl_msafile_phylip.c:389:13:
esl_msafile_phylip.c:1048:10: warning: 'ncols0' may be used uninitialized [-Wmaybe-uninitialized]
1048 | for (c = ncols0-1; nres1 && c >= 0; c--)
| ~~^~~~~~~~~~
esl_msafile_phylip.c: In function 'esl_msafile_phylip_CheckFileFormat':
esl_msafile_phylip.c:683:20: note: 'ncols0' was declared here
683 | int ncols, ncols0;
| ^~~~~~
CC esl_msafile_selex.o
CC esl_msafile_stockholm.o
CC esl_msashuffle.o
CC esl_msaweight.o
CC esl_normal.o
CC esl_paml.o
CC esl_quicksort.o
CC esl_random.o
esl_msaweight.c: In function 'esl_msaweight_IDFilter_adv':
esl_msaweight.c:1035:9: warning: 'conscols_112' may be used uninitialized [-Wmaybe-uninitialized]
1035 | collect_counts(cfg, msa, conscols, ncons, ct, NULL);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
esl_msaweight.c:435:1: note: by argument 3 of type 'const int *' to 'collect_counts.isra.0' declared here
435 | collect_counts(const ESL_MSAWEIGHT_CFG *cfg, const ESL_MSA *msa, const int *conscols, int ncons, int **ct, ESL_MSAWEIGHT_DAT *dat)
| ^~~~~~~~~~~~~~
CC esl_rand64.o
CC esl_randomseq.o
CC esl_ratematrix.o
CC esl_recorder.o
CC esl_red_black.o
CC esl_regexp.o
CC esl_rootfinder.o
CC esl_scorematrix.o
CC esl_sq.o
CC esl_sqio.o
CC esl_sqio_ascii.o
CC esl_sqio_ncbi.o
CC esl_ssi.o
CC esl_stack.o
CC esl_stats.o
CC esl_stopwatch.o
CC esl_stretchexp.o
CC esl_subcmd.o
CC esl_threads.o
CC esl_tree.o
CC esl_varint.o
esl_varint.c: In function 'esl_varint_google_decode':
esl_varint.c:474:11: warning: 'grp' may be used uninitialized [-Wmaybe-uninitialized]
474 | if (grp & cmask) { status = eslEOD; goto ERROR; }
| ~~~~^~~~~~~
esl_varint.c:464:12: note: 'grp' was declared here
464 | uint64_t grp; // current k-bit code group
| ^~~
CC esl_vectorops.o
CC esl_weibull.o
CC esl_workqueue.o
CC esl_wuss.o
CC esl_sse.o
esl_wuss.c: In function 'esl_wuss2ct':
esl_wuss.c:136:10: warning: 'status' may be used uninitialized [-Wmaybe-uninitialized]
136 | return status;
| ^~~~~~
esl_wuss.c:56:14: note: 'status' was declared here
56 | int status; /* success or failure return status */
| ^~~~~~
CC esl_avx.o
CC esl_avx512.o
CC esl_neon.o
CC esl_vmx.o
AR libeasel.a
SUBDIR miniapps
GEN esl-afetch
GEN esl-alimanip
GEN esl-alimap
GEN esl-alimask
In function 'mask_based_on_postprobs',
inlined from 'main' at esl-alimask.c:482:18:
esl-alimask.c:1085:33: warning: 'ppidx_thresh' may be used uninitialized [-Wmaybe-uninitialized]
1085 | for(ppidx = 10; ppidx >= ppidx_thresh; ppidx--) {
| ~~~~~~^~~~~~~~~~~~~~~
esl-alimask.c: In function 'main':
esl-alimask.c:1007:7: note: 'ppidx_thresh' was declared here
1007 | int ppidx_thresh;
| ^~~~~~~~~~~~
GEN esl-alimerge
esl-alimerge.c: In function 'validate_and_copy_msa_annotation':
esl-alimerge.c:732:7: warning: 'found_tag' may be used uninitialized [-Wmaybe-uninitialized]
732 | int found_tag;
| ^~~~~~~~~
In file included from /usr/include/stdio.h:906,
from esl-alimerge.c:26:
In function 'fprintf',
inlined from 'main' at esl-alimerge.c:366:2:
/usr/include/bits/stdio2.h:79:10: warning: 'namewidth' may be used uninitialized [-Wmaybe-uninitialized]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
esl-alimerge.c: In function 'main':
esl-alimerge.c:136:14: note: 'namewidth' was declared here
136 | int namewidth; /* max width of file name */
| ^~~~~~~~~
esl-alimerge.c:412:16: warning: 'clen' may be used uninitialized [-Wmaybe-uninitialized]
412 | if((status = validate_and_copy_msa_annotation(go, outfmt, mmsa, msaA, nali_tot, clen, alen_mmsa, maxgap, maxmis, errbuf)) != eslOK)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
esl-alimerge.c:118:17: note: 'clen' was declared here
118 | int clen; /* consensus length (non-gap #=GC RF length) of all alignments */
| ^~~~
GEN esl-alipid
GEN esl-alirev
GEN esl-alistat
In file included from /usr/include/stdio.h:906,
from esl-alistat.c:6:
In function 'printf',
inlined from 'main' at esl-alistat.c:293:6:
/usr/include/bits/stdio2.h:86:10: warning: 'small' may be used uninitialized [-Wmaybe-uninitialized]
86 | return __printf_chk (__USE_FORTIFY_LEVEL - 1, __fmt, __va_arg_pack ());
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
esl-alistat.c: In function 'main':
esl-alistat.c:74:17: note: 'small' was declared here
74 | int64_t small, large; /* smallest, largest sequence */
| ^~~~~
In function 'printf',
inlined from 'main' at esl-alistat.c:294:6:
/usr/include/bits/stdio2.h:86:10: warning: 'large' may be used uninitialized [-Wmaybe-uninitialized]
86 | return __printf_chk (__USE_FORTIFY_LEVEL - 1, __fmt, __va_arg_pack ());
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
esl-alistat.c: In function 'main':
esl-alistat.c:74:24: note: 'large' was declared here
74 | int64_t small, large; /* smallest, largest sequence */
| ^~~~~
GEN esl-compalign
esl-compalign.c: In function 'main':
esl-compalign.c:231:13: warning: 'masklen' may be used uninitialized [-Wmaybe-uninitialized]
231 | if(masklen != rflen) {
| ^
esl-compalign.c:90:7: note: 'masklen' was declared here
90 | int masklen;
| ^~~~~~~
esl-compalign.c:326:30: warning: 'ppidx' may be used uninitialized [-Wmaybe-uninitialized]
326 | if(do_post) pti[ppidx]++;
| ^
esl-compalign.c:104:7: note: 'ppidx' was declared here
104 | int ppidx; /* index of PP */
| ^~~~~
GEN esl-compstruct
GEN esl-construct
esl-construct.c: In function 'main':
esl-construct.c:573:24: warning: 'fmin' may be used uninitialized [-Wmaybe-uninitialized]
573 | if(do_fmin) { printf("#\n# <x> determined to be %.3f\n", fthresh); }
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
esl-construct.c:129:9: note: 'fmin' was declared here
129 | float fmin;
| ^~~~
GEN esl-histplot
GEN esl-mask
GEN esl-mixdchlet
GEN esl-reformat
esl-reformat.c: In function 'main':
esl-reformat.c:416:9: warning: 'mapfp' may be used uninitialized [-Wmaybe-uninitialized]
416 | fclose(mapfp);
| ^~~~~~~~~~~~~
esl-reformat.c:304:20: note: 'mapfp' was declared here
304 | FILE *mapfp; /* output stream for the map file */
| ^~~~~
esl-reformat.c:212:13: warning: 'reached_eof' may be used uninitialized [-Wmaybe-uninitialized]
212 | if(! reached_eof) esl_fatal("Input file contains >1 alignments, but afa formatted output file can only contain 1");
| ^
esl-reformat.c:103:10: note: 'reached_eof' was declared here
103 | int reached_eof; /* reached EOF? used only in small mem mode */
| ^~~~~~~~~~~
GEN esl-selectn
GEN esl-seqrange
GEN esl-seqstat
GEN esl-sfetch
GEN esl-shuffle
GEN esl-ssdraw
esl-ssdraw.c: In function 'get_insert_info_from_ifile.constprop.0':
esl-ssdraw.c:6664:32: warning: 'rfpos' may be used uninitialized [-Wmaybe-uninitialized]
6664 | if(! seen_end_of_model_line) esl_fatal("Error reading insert file, didn't read the special '//' line at the end of file %s.\n", rfpos, efp->linenumber, ifile);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
esl-ssdraw.c:6500:19: note: 'rfpos' was declared here
6500 | int rfpos; /* current nongap RF position */
| ^~~~~
In file included from esl-ssdraw.c:16:
In function 'draw_header_and_footer',
inlined from 'draw_sspostscript.isra.0' at esl-ssdraw.c:2491:18:
esl-ssdraw.c:6263:56: warning: 'split_idx' may be used uninitialized [-Wmaybe-uninitialized]
6263 | ESL_ALLOC(desc2print, sizeof(char) * (split_idx+1));
| ~~~~~~~~~~^~~
esl-ssdraw.c: In function 'draw_sspostscript.isra.0':
esl-ssdraw.c:6164:10: note: 'split_idx' was declared here
6164 | int i, split_idx;
| ^~~~~~~~~
GEN esl-translate
In file included from /usr/include/stdio.h:906,
from esl-ssdraw.c:10:
In function 'fprintf',
inlined from 'individuals_sspostscript.constprop.0' at esl-ssdraw.c:3663:7:
/usr/include/bits/stdio2.h:79:10: warning: 'namewidth' may be used uninitialized [-Wmaybe-uninitialized]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
esl-ssdraw.c: In function 'individuals_sspostscript.constprop.0':
esl-ssdraw.c:3347:7: note: 'namewidth' was declared here
3347 | int namewidth; /* length in chars of longest seq name we'll print */
| ^~~~~~~~~
esl-ssdraw.c: In function 'parse_template_file.isra.0':
esl-ssdraw.c:2716:10: warning: 'ps' may be used uninitialized [-Wmaybe-uninitialized]
2716 | if(ps->rflen == msa_rflen) { found_match = TRUE; }
| ~~^~~~~~~
esl-ssdraw.c:2703:19: note: 'ps' was declared here
2703 | SSPostscript_t *ps;
| ^~
GEN esl-weight
CC cmd_alistat.o
CC cmd_downsample.o
CC cmd_filter.o
CC cmd_index.o
GEN easel
SUBDIR libdivsufsort
CC divsufsort.o
AR libdivsufsort.a
SUBDIR src
CC alimask.o
CC build.o
alimask.c: In function 'main':
alimask.c:313:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
313 | if (puts("Must specify mask range with --modelrange, --alirange, --model2ali, or --ali2model\n") < 0) ESL_XEXCEPTION_SYS(eslEWRITE, "write failed"); goto ERROR;
| ^~
alimask.c:313:154: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
313 | if (puts("Must specify mask range with --modelrange, --alirange, --model2ali, or --ali2model\n") < 0) ESL_XEXCEPTION_SYS(eslEWRITE, "write failed"); goto ERROR;
| ^~~~
CC cachedb.o
CC cachedb_shard.o
CC emit.o
CC errors.o
CC evalues.o
CC eweight.o
CC generic_decoding.o
CC generic_fwdback.o
CC generic_fwdback_chk.o
CC generic_fwdback_banded.o
CC generic_null2.o
CC generic_msv.o
CC generic_optacc.o
CC generic_stotrace.o
generic_stotrace.c: In function 'p7_GStochasticTrace':
generic_stotrace.c:172:21: warning: 'scur' may be used uninitialized [-Wmaybe-uninitialized]
172 | if ((status = p7_trace_Append(tr, scur, k, i)) != eslOK) goto ERROR;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
generic_stotrace.c:57:11: note: 'scur' was declared here
57 | int scur, sprv;
| ^~~~
CC generic_viterbi.o
CC generic_vtrace.o
CC h2_io.o
CC heatmap.o
CC hmmlogo.o
CC hmmdmstr.o
CC hmmdmstr_shard.o
In function 'process_ServerCmd',
inlined from 'clientside_loop' at hmmdmstr.c:1134:5:
hmmdmstr.c:1020:24: warning: array subscript 'struct HMMD_COMMAND[0]' is partly outside array bounds of 'unsigned char[12]' [-Warray-bounds=]
1020 | cmd->hdr.command = HMMD_CMD_SHUTDOWN;
hmmdmstr.c:1017:18: note: object of size 12 allocated by 'malloc'
1017 | if ((cmd = malloc(sizeof(HMMD_HEADER))) == NULL) LOG_FATAL_MSG("malloc", errno);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
hmmdmstr.c:1046:3: warning: array subscript 'struct HMMD_COMMAND[0]' is partly outside array bounds of 'unsigned char[12]' [-Warray-bounds=]
1046 | printf("Queuing command %d from %s (%d)\n", cmd->hdr.command, parms->ip_addr, parms->sock);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hmmdmstr.c:1017:18: note: object of size 12 allocated by 'malloc'
1017 | if ((cmd = malloc(sizeof(HMMD_HEADER))) == NULL) LOG_FATAL_MSG("malloc", errno);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'process_ServerCmd',
inlined from 'clientside_loop' at hmmdmstr_shard.c:1173:5:
hmmdmstr_shard.c:1059:24: warning: array subscript 'struct HMMD_COMMAND_SHARD[0]' is partly outside array bounds of 'unsigned char[12]' [-Warray-bounds=]
1059 | cmd->hdr.command = HMMD_CMD_SHUTDOWN;
hmmdmstr_shard.c:1056:18: note: object of size 12 allocated by 'malloc'
1056 | if ((cmd = malloc(sizeof(HMMD_HEADER))) == NULL) LOG_FATAL_MSG("malloc", errno);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
hmmdmstr_shard.c:1085:3: warning: array subscript 'struct HMMD_COMMAND_SHARD[0]' is partly outside array bounds of 'unsigned char[12]' [-Warray-bounds=]
1085 | printf("Queuing command %d from %s (%d)\n", cmd->hdr.command, parms->ip_addr, parms->sock);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hmmdmstr_shard.c:1056:18: note: object of size 12 allocated by 'malloc'
1056 | if ((cmd = malloc(sizeof(HMMD_HEADER))) == NULL) LOG_FATAL_MSG("malloc", errno);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:535,
from hmmdmstr.c:10:
In function 'memset',
inlined from 'destroy_worker' at hmmdmstr.c:948:5,
inlined from 'update_workers.part.0' at hmmdmstr.c:285:7:
/usr/include/bits/string_fortified.h:59:10: warning: argument 1 null where non-null expected [-Wnonnull]
59 | return __builtin___memset_chk (__dest, __ch, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
60 | __glibc_objsize0 (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/bits/string_fortified.h:59:10: note: in a call to built-in function 'memset'
In file included from /usr/include/string.h:535,
from hmmdmstr_shard.c:10:
In function 'memset',
inlined from 'destroy_worker' at hmmdmstr_shard.c:987:5,
inlined from 'update_workers.part.0' at hmmdmstr_shard.c:306:7:
/usr/include/bits/string_fortified.h:59:10: warning: argument 1 null where non-null expected [-Wnonnull]
59 | return __builtin___memset_chk (__dest, __ch, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
60 | __glibc_objsize0 (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/bits/string_fortified.h:59:10: note: in a call to built-in function 'memset'
CC hmmd_search_status.o
CC hmmdwrkr.o
CC hmmdwrkr_shard.o
CC hmmdutils.o
CC hmmer.o
CC logsum.o
CC modelconfig.o
CC modelstats.o
CC mpisupport.o
CC seqmodel.o
CC tracealign.o
CC p7_alidisplay.o
CC p7_bg.o
CC p7_builder.o
CC p7_domain.o
p7_domain.c: In function 'p7_domain_Serialize':
p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
191 | network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
198 | network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
203 | network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
208 | network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
213 | network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
218 | network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~
p7_domain.c: In function 'p7_domain_Deserialize':
p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
341 | ret_obj->envsc = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
347 | ret_obj->domcorrection = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
353 | ret_obj->dombias = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
359 | ret_obj->oasc = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
365 | ret_obj->bitscore = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
371 | ret_obj->lnP = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
398 | ret_obj->scores_per_pos[i] = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
CC p7_domaindef.o
CC p7_gbands.o
p7_domaindef.c: In function 'rescore_isolated_domain':
p7_domaindef.c:932:5: warning: 'orig_L' may be used uninitialized [-Wmaybe-uninitialized]
932 | p7_oprofile_ReconfigRestLength(om, orig_L);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_domaindef.c:827:18: note: 'orig_L' was declared here
827 | int orig_L;
| ^~~~~~
CC p7_gmx.o
CC p7_gmxb.o
CC p7_gmxchk.o
CC p7_hit.o
CC p7_hmm.o
p7_hit.c: In function 'p7_hit_Serialize':
p7_hit.c:226:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
226 | network_64bit = esl_hton64(*((uint64_t *) &(obj->sortkey)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:231:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
231 | network_32bit = esl_hton32(*((uint32_t *) &(obj->score)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:236:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
236 | network_32bit = esl_hton32(*((uint32_t *) &(obj->pre_score)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:241:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
241 | network_32bit = esl_hton32(*((uint32_t *) &(obj->sum_score)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:246:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
246 | network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:251:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
251 | network_64bit = esl_hton64(*((uint64_t *) &(obj->pre_lnP)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:256:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
256 | network_64bit = esl_hton64(*((uint64_t *) &(obj->sum_lnP)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:261:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
261 | network_32bit = esl_hton32(*((uint32_t *) &(obj->nexpected)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c: In function 'p7_hit_Deserialize':
p7_hit.c:408:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
408 | ret_obj->sortkey = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:414:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
414 | ret_obj->score = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:420:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
420 | ret_obj->pre_score = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:426:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
426 | ret_obj->sum_score = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:432:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
432 | ret_obj->lnP = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:438:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
438 | ret_obj->pre_lnP = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:444:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
444 | ret_obj->sum_lnP = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
p7_hit.c:450:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
450 | ret_obj->nexpected = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
CC p7_hmmcache.o
CC p7_hmmd_search_stats.o
p7_hmmd_search_stats.c: In function 'p7_hmmd_search_stats_Serialize':
p7_hmmd_search_stats.c:89:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
89 | network_64bit = esl_hton64(*((uint64_t *) &(obj->elapsed))); // ow, this hurts, but is probably the best way to get the
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hmmd_search_stats.c:97:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
97 | network_64bit = esl_hton64(*((uint64_t *) &(obj->user)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hmmd_search_stats.c:103:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
103 | network_64bit = esl_hton64(*((uint64_t *) &(obj->sys)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~
p7_hmmd_search_stats.c:109:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
109 | network_64bit = esl_hton64(*((uint64_t *) &(obj->Z)));
| ~^~~~~~~~~~~~~~~~~~~~~~~
p7_hmmd_search_stats.c:115:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
115 | network_64bit = esl_hton64(*((uint64_t *) &(obj->domZ)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~
p7_hmmd_search_stats.c: In function 'p7_hmmd_search_stats_Deserialize':
p7_hmmd_search_stats.c:256:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
256 | ret_obj->elapsed = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
p7_hmmd_search_stats.c:262:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
262 | ret_obj->user = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
p7_hmmd_search_stats.c:268:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
268 | ret_obj->sys = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
p7_hmmd_search_stats.c:274:18: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
274 | ret_obj->Z = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
p7_hmmd_search_stats.c:280:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
280 | ret_obj->domZ = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
CC p7_hmmfile.o
CC p7_hmmwindow.o
CC p7_pipeline.o
CC p7_prior.o
CC p7_profile.o
CC p7_spensemble.o
CC p7_tophits.o
In file included from p7_spensemble.c:7:
p7_spensemble.c: In function 'p7_spensemble_Cluster':
p7_spensemble.c:344:43: warning: 'imax' may be used uninitialized [-Wmaybe-uninitialized]
344 | cwindow_width = ESL_MAX(ESL_MAX(imax-imin+1, jmax-jmin+1),
| ~~~~^~~~~
p7_spensemble.c:294:7: note: 'imax' was declared here
294 | int imax, jmax, kmax, mmax;
| ^~~~
p7_spensemble.c:344:56: warning: 'jmin' may be used uninitialized [-Wmaybe-uninitialized]
344 | cwindow_width = ESL_MAX(ESL_MAX(imax-imin+1, jmax-jmin+1),
| ~~~~^~~~~
p7_spensemble.c:293:13: note: 'jmin' was declared here
293 | int imin, jmin, kmin, mmin;
| ^~~~
p7_spensemble.c:345:43: warning: 'kmin' may be used uninitialized [-Wmaybe-uninitialized]
345 | ESL_MAX(kmax-kmin+1, mmax-mmin+1));
| ~~~~^~~~~
p7_spensemble.c:293:19: note: 'kmin' was declared here
293 | int imin, jmin, kmin, mmin;
| ^~~~
p7_spensemble.c:345:56: warning: 'mmin' may be used uninitialized [-Wmaybe-uninitialized]
345 | ESL_MAX(kmax-kmin+1, mmax-mmin+1));
| ~~~~^~~~~
p7_spensemble.c:293:25: note: 'mmin' was declared here
293 | int imin, jmin, kmin, mmin;
| ^~~~
p7_spensemble.c:344:56: warning: 'jmax' may be used uninitialized [-Wmaybe-uninitialized]
344 | cwindow_width = ESL_MAX(ESL_MAX(imax-imin+1, jmax-jmin+1),
| ~~~~^~~~~
p7_spensemble.c:294:13: note: 'jmax' was declared here
294 | int imax, jmax, kmax, mmax;
| ^~~~
p7_spensemble.c:345:43: warning: 'kmax' may be used uninitialized [-Wmaybe-uninitialized]
345 | ESL_MAX(kmax-kmin+1, mmax-mmin+1));
| ~~~~^~~~~
p7_spensemble.c:294:19: note: 'kmax' was declared here
294 | int imax, jmax, kmax, mmax;
| ^~~~
p7_spensemble.c:345:56: warning: 'mmax' may be used uninitialized [-Wmaybe-uninitialized]
345 | ESL_MAX(kmax-kmin+1, mmax-mmin+1));
| ~~~~^~~~~
p7_spensemble.c:294:25: note: 'mmax' was declared here
294 | int imax, jmax, kmax, mmax;
| ^~~~
CC p7_trace.o
In file included from /usr/include/stdio.h:906,
from ../easel/easel.h:22,
from p7_tophits.c:16:
In function 'fprintf',
inlined from 'p7_tophits_Targets' at p7_tophits.c:1142:12:
/usr/include/bits/stdio2.h:79:10: warning: 'posw' may be used uninitialized [-Wmaybe-uninitialized]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
p7_tophits.c: In function 'p7_tophits_Targets':
p7_tophits.c:1068:10: note: 'posw' was declared here
1068 | int posw;
| ^~~~
CC p7_scoredata.o
CC hmmpgmd2msa.o
CC fm_alphabet.o
CC fm_general.o
CC fm_sse.o
CC fm_ssv.o
CC hmmalign.o
In function 'FM_extendSeed',
inlined from 'p7_SSVFM_longlarget' at fm_ssv.c:806:5:
fm_ssv.c:696:32: warning: 'max_hit_start' may be used uninitialized [-Wmaybe-uninitialized]
696 | diag->k = model_start + max_hit_start - 1;
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~
fm_ssv.c: In function 'p7_SSVFM_longlarget':
fm_ssv.c:648:22: note: 'max_hit_start' was declared here
648 | int64_t hit_start, max_hit_start, max_hit_end;
| ^~~~~~~~~~~~~
In function 'FM_extendSeed',
inlined from 'p7_SSVFM_longlarget' at fm_ssv.c:806:5:
fm_ssv.c:697:31: warning: 'max_hit_end' may be used uninitialized [-Wmaybe-uninitialized]
697 | diag->length = max_hit_end - max_hit_start + 1;
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~
fm_ssv.c: In function 'p7_SSVFM_longlarget':
fm_ssv.c:648:37: note: 'max_hit_end' was declared here
648 | int64_t hit_start, max_hit_start, max_hit_end;
| ^~~~~~~~~~~
CC hmmbuild.o
CC hmmconvert.o
CC hmmemit.o
CC hmmfetch.o
CC hmmpgmd.o
CC hmmpgmd_shard.o
CC hmmpress.o
CC hmmscan.o
CC hmmsearch.o
CC hmmsim.o
In function 'output_filter_power',
inlined from 'output_result' at hmmsim.c:756:38,
inlined from 'serial_master' at hmmsim.c:384:11,
inlined from 'main' at hmmsim.c:248:7:
hmmsim.c:902:25: warning: 'mu' may be used uninitialized [-Wmaybe-uninitialized]
902 | esl_exp_surv (scores[i], pmu, plambda));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hmmsim.c: In function 'main':
hmmsim.c:360:15: note: 'mu' was declared here
360 | double mu, lambda;
| ^~
In function 'output_filter_power',
inlined from 'output_result' at hmmsim.c:756:38,
inlined from 'serial_master' at hmmsim.c:384:11,
inlined from 'main' at hmmsim.c:248:7:
hmmsim.c:902:25: warning: 'lambda' may be used uninitialized [-Wmaybe-uninitialized]
902 | esl_exp_surv (scores[i], pmu, plambda));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hmmsim.c: In function 'main':
hmmsim.c:360:19: note: 'lambda' was declared here
360 | double mu, lambda;
| ^~~~~~
CC hmmstat.o
CC jackhmmer.o
CC phmmer.o
CC nhmmer.o
CC nhmmscan.o
In function 'serial_loop',
inlined from 'serial_master' at nhmmer.c:1071:35:
nhmmer.c:1386:6: warning: 'dbsq_revcmp' may be used uninitialized [-Wmaybe-uninitialized]
1386 | if (dbsq_revcmp) esl_sq_Destroy(dbsq_revcmp);
| ^
nhmmer.c: In function 'serial_master':
nhmmer.c:1338:13: note: 'dbsq_revcmp' was declared here
1338 | ESL_SQ *dbsq_revcmp;
| ^~~~~~~~~~~
CC makehmmerdb.o
CC hmmc2.o
CC hmmerfm-exactmatch.o
AR libhmmer-src.stamp
SUBDIR impl_sse
CC decoding.o
In file included from /usr/include/stdio.h:906,
from ../easel/easel.h:22,
from hmmerfm-exactmatch.c:6:
In function 'fprintf',
inlined from 'output_header' at hmmerfm-exactmatch.c:123:7,
inlined from 'main' at hmmerfm-exactmatch.c:303:3:
/usr/include/bits/stdio2.h:79:10: warning: 'alph' may be used uninitialized [-Wmaybe-uninitialized]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
hmmerfm-exactmatch.c: In function 'main':
hmmerfm-exactmatch.c:94:9: note: 'alph' was declared here
94 | char *alph;
| ^~~~
CC fwdback.o
CC io.o
CC ssvfilter.o
CC msvfilter.o
CC null2.o
CC optacc.o
CC stotrace.o
optacc.c: In function 'p7_OATrace':
optacc.c:255:21: warning: 'smax' may be used uninitialized [-Wmaybe-uninitialized]
255 | if ((status = p7_trace_AppendWithPP(tr, s1, k, i, postprob)) != eslOK) return status;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
optacc.c:398:10: note: 'smax' was declared here
398 | int smax, kmax;
| ^~~~
In function 'get_postprob',
inlined from 'p7_OATrace' at optacc.c:254:18:
optacc.c:269:21: warning: 'kmax' may be used uninitialized [-Wmaybe-uninitialized]
269 | int q = (k-1) % Q; /* (q,r) is position of the current DP cell M(i,k) */
| ~~^~~
optacc.c: In function 'p7_OATrace':
optacc.c:398:16: note: 'kmax' was declared here
398 | int smax, kmax;
| ^~~~
CC vitfilter.o
CC p7_omx.o
CC p7_oprofile.o
CC mpi.o
AR libhmmer-impl.stamp
GEN alimask
GEN hmmalign
GEN hmmbuild
GEN hmmconvert
GEN hmmemit
GEN hmmfetch
GEN hmmlogo
GEN hmmpgmd
GEN hmmpgmd_shard
GEN hmmpress
GEN hmmscan
GEN hmmsearch
GEN hmmsim
GEN hmmstat
GEN jackhmmer
GEN phmmer
GEN nhmmer
GEN nhmmscan
GEN makehmmerdb
GEN hmmc2
GEN hmmerfm-exactmatch
SUBDIR profmark
CC create-profmark.o
CC rocplot.o
In file included from /usr/include/stdio.h:906,
from create-profmark.c:18:
In function 'fprintf',
inlined from 'main' at create-profmark.c:258:4:
/usr/include/bits/stdio2.h:79:10: warning: 'nfrags' may be used uninitialized [-Wmaybe-uninitialized]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
create-profmark.c: In function 'main':
create-profmark.c:167:17: note: 'nfrags' was declared here
167 | int nfrags; /* # of fragments removed */
| ^~~~~~
In function 'synthesize_positives',
inlined from 'main' at create-profmark.c:253:4:
create-profmark.c:536:27: warning: 'j' may be used uninitialized [-Wmaybe-uninitialized]
536 | memcpy(sq->dsq+j+d1n+1, domain2->dsq+1, sizeof(ESL_DSQ) * d2n);
| ^
create-profmark.c: In function 'main':
create-profmark.c:445:13: note: 'j' was declared here
445 | int i,j;
| ^
GEN rocplot
GEN create-profmark
../easel/esl_ssi.h:115:13: warning: type of 'esl_ssi_FindNumber' does not match original declaration [-Wlto-type-mismatch]
115 | extern int esl_ssi_FindNumber(ESL_SSI *ssi, int64_t nkey,
| ^
../easel/esl_ssi.c:253:1: note: 'esl_ssi_FindNumber' was previously declared here
253 | esl_ssi_FindNumber(ESL_SSI *ssi, int64_t nkey, uint16_t *opt_fh, off_t *opt_roff, off_t *opt_doff, int64_t *opt_L, char **opt_pkey)
| ^
../easel/esl_ssi.c:253:1: note: code may be misoptimized unless '-fno-strict-aliasing' is used
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.U6tbqy
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386
++ dirname /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd hmmer-3.3.2
+ rm -rf /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386
+ make install DESTDIR=/builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386
SUBDIR easel
SUBDIR miniapps
SUBDIR libdivsufsort
SUBDIR src
SUBDIR impl_sse
SUBDIR profmark
/usr/bin/install -c -d /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin
/usr/bin/install -c -d /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/share/man/man1
make -C src install
make[1]: Entering directory '/builddir/build/BUILD/hmmer-3.3.2/src'
for file in alimask hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer nhmmer nhmmscan makehmmerdb; do \
/usr/bin/install -c -m 0755 $file /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/ ;\
done
make[1]: Leaving directory '/builddir/build/BUILD/hmmer-3.3.2/src'
make -C documentation install
make[1]: Entering directory '/builddir/build/BUILD/hmmer-3.3.2/documentation'
make -C man install
make[2]: Entering directory '/builddir/build/BUILD/hmmer-3.3.2/documentation/man'
for file in hmmer hmmalign hmmbuild hmmc2 hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer makehmmerdb phmmer nhmmer nhmmscan alimask; do \
/usr/bin/install -c -m 0664 $file.man /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/share/man/man1/${file}.1 ;\
done
make[2]: Leaving directory '/builddir/build/BUILD/hmmer-3.3.2/documentation/man'
make[1]: Leaving directory '/builddir/build/BUILD/hmmer-3.3.2/documentation'
+ cd easel
+ make install DESTDIR=/builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386
/usr/bin/install -c -d /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin
/usr/bin/install -c -d /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/share/man/man1
make -C miniapps install
make[1]: Entering directory '/builddir/build/BUILD/hmmer-3.3.2/easel/miniapps'
/usr/bin/install -c -m 0755 easel /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/
for file in esl-afetch esl-alimanip esl-alimap esl-alimask esl-alimerge esl-alipid esl-alirev esl-alistat esl-compalign esl-compstruct esl-construct esl-histplot esl-mask esl-mixdchlet esl-reformat esl-selectn esl-seqrange esl-seqstat esl-sfetch esl-shuffle esl-ssdraw esl-translate esl-weight; do \
/usr/bin/install -c -m 0755 $file /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/ ;\
done
for file in esl-afetch esl-alimanip esl-alimap esl-alimask esl-alimerge esl-alipid esl-alirev esl-alistat esl-compalign esl-compstruct esl-construct esl-histplot esl-mask esl-mixdchlet esl-reformat esl-selectn esl-seqrange esl-seqstat esl-sfetch esl-shuffle esl-ssdraw esl-translate esl-weight; do \
/usr/bin/install -c -m 0644 $file.man /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/share/man/man1/${file}.1 ;\
done
make[1]: Leaving directory '/builddir/build/BUILD/hmmer-3.3.2/easel/miniapps'
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.3.2-2.fc38 --unique-debug-suffix -3.3.2-2.fc38.i386 --unique-debug-src-base hmmer-3.3.2-2.fc38.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/hmmer-3.3.2
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/alimask
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/easel
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-afetch
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-alimanip
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-alimap
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-alimask
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-alimerge
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-alipid
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-alirev
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-alistat
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-compalign
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-compstruct
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-construct
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-histplot
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-mask
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-mixdchlet
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-reformat
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-selectn
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-seqrange
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-seqstat
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-sfetch
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-shuffle
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-ssdraw
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-translate
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/esl-weight
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/hmmalign
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/hmmbuild
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/hmmconvert
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/hmmemit
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/hmmfetch
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/hmmlogo
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/hmmpgmd
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/hmmpgmd_shard
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/hmmpress
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/hmmscan
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/hmmsearch
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/hmmsim
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/hmmstat
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/jackhmmer
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/makehmmerdb
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/nhmmer
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/nhmmscan
extracting debug info from /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/bin/phmmer
original debug info size: 36644kB, size after compression: 27936kB
/usr/bin/sepdebugcrcfix: Updated 43 CRC32s, 0 CRC32s did match.
13596 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.5MT71l
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd hmmer-3.3.2
+ make check
SUBDIR easel
GEN easel_utest
./easel.c: In function 'esl_fail':
./easel.c:79:12: warning: 'ap' may be used uninitialized [-Wmaybe-uninitialized]
79 | else vsyslog(LOG_ERR, format, ap); // SRE: TODO: check this.
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
./easel.c:69:15: note: 'ap' was declared here
69 | va_list ap;
| ^~
./easel.c: In function 'esl_exception':
./easel.c:157:12: warning: 'argp' may be used uninitialized [-Wmaybe-uninitialized]
157 | else vsyslog(LOG_ERR, format, argp);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./easel.c:131:11: note: 'argp' was declared here
131 | va_list argp;
| ^~~~
./easel.c: In function 'esl_fatal':
./easel.c:308:8: warning: 'argp' may be used uninitialized [-Wmaybe-uninitialized]
308 | else vsyslog(LOG_ERR, format, argp);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./easel.c:295:11: note: 'argp' was declared here
295 | va_list argp;
| ^~~~
GEN esl_alloc_utest
GEN esl_alphabet_utest
GEN esl_bitfield_utest
GEN esl_buffer_utest
GEN esl_cluster_utest
GEN esl_cpu_utest
GEN esl_dirichlet_utest
GEN esl_distance_utest
GEN esl_dmatrix_utest
GEN esl_dsqdata_utest
GEN esl_exponential_utest
GEN esl_fileparser_utest
GEN esl_gamma_utest
GEN esl_gencode_utest
GEN esl_getopts_utest
GEN esl_graph_utest
GEN esl_gumbel_utest
GEN esl_heap_utest
GEN esl_histogram_utest
GEN esl_hmm_utest
GEN esl_huffman_utest
GEN esl_hyperexp_utest
GEN esl_json_utest
./esl_json.c: In function 'esl_json_Validate':
./esl_json.c:752:33: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
752 | case eslJSON_BOOLEAN: if (! esl_memstrcmp(bf->mem + pos1, pos2-pos1+1, "true") &&
| ^~
./esl_json.c:753:167: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
753 | ! esl_memstrcmp(bf->mem + pos1, pos2-pos1+1, "false")) ESL_FAIL(eslFAIL, errbuf, "boolean isn't a boolean, tok %d", i); break;
| ^~~~~
GEN esl_keyhash_utest
In function 'utest_stringkeys',
inlined from 'main' at ./esl_keyhash.c:875:3:
./esl_keyhash.c:786:54: warning: 'h42' may be used uninitialized [-Wmaybe-uninitialized]
786 | if ( esl_keyhash_Lookup(kh, "XX", -1, &h) != eslOK || h != h42) esl_fatal(msg);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
./esl_keyhash.c: In function 'main':
./esl_keyhash.c:749:25: note: 'h42' was declared here
749 | int i,j,h,h42;
| ^~~
In function 'utest_memkeys',
inlined from 'main' at ./esl_keyhash.c:876:3:
./esl_keyhash.c:835:62: warning: 'h42' may be used uninitialized [-Wmaybe-uninitialized]
835 | if ( esl_keyhash_Lookup(kh, keys[42], keylen, &h) != eslOK || h != h42) esl_fatal(msg);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
./esl_keyhash.c: In function 'main':
./esl_keyhash.c:812:23: note: 'h42' was declared here
812 | int i,h,h42;
| ^~~
GEN esl_matrixops_utest
GEN esl_mem_utest
GEN esl_minimizer_utest
./esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent':
./esl_minimizer.c:243:23: warning: 'fx' may be used uninitialized [-Wmaybe-uninitialized]
243 | if (opt_fx) *opt_fx = fx;
| ~~~~~~~~^~~~
./esl_minimizer.c:119:10: note: 'fx' was declared here
119 | double fx;
| ^~
In function 'brent',
inlined from 'esl_min_ConjugateGradientDescent' at ./esl_minimizer.c:192:7:
./esl_minimizer.c:720:21: warning: 'ax' may be used uninitialized [-Wmaybe-uninitialized]
720 | m = 0.5 * (a+b);
| ~~^~~
./esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent':
./esl_minimizer.c:118:10: note: 'ax' was declared here
118 | double ax,bx,cx;
| ^~
In function 'brent',
inlined from 'esl_min_ConjugateGradientDescent' at ./esl_minimizer.c:192:7:
./esl_minimizer.c:720:21: warning: 'cx' may be used uninitialized [-Wmaybe-uninitialized]
720 | m = 0.5 * (a+b);
| ~~^~~
./esl_minimizer.c: In function 'esl_min_ConjugateGradientDescent':
./esl_minimizer.c:118:16: note: 'cx' was declared here
118 | double ax,bx,cx;
| ^~
GEN esl_mixdchlet_utest
GEN esl_msa_utest
GEN esl_msacluster_utest
GEN esl_msafile_utest
GEN esl_msafile2_utest
GEN esl_msafile_a2m_utest
GEN esl_msafile_afa_utest
GEN esl_msafile_clustal_utest
./esl_msafile_clustal.c: In function 'esl_msafile_clustal_Read':
./esl_msafile_clustal.c:247:12: warning: 'block_seq_start' may be used uninitialized [-Wmaybe-uninitialized]
247 | if (seq_start != block_seq_start) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence start is misaligned");
| ^
./esl_msafile_clustal.c:203:13: note: 'block_seq_start' was declared here
203 | esl_pos_t block_seq_start, block_seq_len;
| ^~~~~~~~~~~~~~~
./esl_msafile_clustal.c:248:12: warning: 'block_seq_len' may be used uninitialized [-Wmaybe-uninitialized]
248 | if (seq_len != block_seq_len) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence end is misaligned");
| ^
./esl_msafile_clustal.c:203:30: note: 'block_seq_len' was declared here
203 | esl_pos_t block_seq_start, block_seq_len;
| ^~~~~~~~~~~~~
GEN esl_msafile_phylip_utest
In function 'phylip_check_interleaved',
inlined from 'esl_msafile_phylip_CheckFileFormat' at ./esl_msafile_phylip.c:389:13:
./esl_msafile_phylip.c:739:16: warning: 'nres1' may be used uninitialized [-Wmaybe-uninitialized]
739 | if (nres1+nres2 == alen) break;
| ~~~~~^~~~~~
./esl_msafile_phylip.c: In function 'esl_msafile_phylip_CheckFileFormat':
./esl_msafile_phylip.c:687:13: note: 'nres1' was declared here
687 | int nres1;
| ^~~~~
In function 'phylip_deduce_namewidth',
inlined from 'phylip_check_interleaved' at ./esl_msafile_phylip.c:747:22,
inlined from 'esl_msafile_phylip_CheckFileFormat' at ./esl_msafile_phylip.c:389:13:
./esl_msafile_phylip.c:1048:10: warning: 'ncols0' may be used uninitialized [-Wmaybe-uninitialized]
1048 | for (c = ncols0-1; nres1 && c >= 0; c--)
| ~~^~~~~~~~~~
./esl_msafile_phylip.c: In function 'esl_msafile_phylip_CheckFileFormat':
./esl_msafile_phylip.c:683:20: note: 'ncols0' was declared here
683 | int ncols, ncols0;
| ^~~~~~
GEN esl_msafile_psiblast_utest
./esl_msafile_psiblast.c: In function 'esl_msafile_psiblast_Read':
./esl_msafile_psiblast.c:228:12: warning: 'block_seq_start' may be used uninitialized [-Wmaybe-uninitialized]
228 | if (seq_start != block_seq_start) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence start is misaligned");
| ^
./esl_msafile_psiblast.c:195:13: note: 'block_seq_start' was declared here
195 | esl_pos_t block_seq_start, block_seq_len;
| ^~~~~~~~~~~~~~~
./esl_msafile_psiblast.c:229:12: warning: 'block_seq_len' may be used uninitialized [-Wmaybe-uninitialized]
229 | if (seq_len != block_seq_len) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence end is misaligned");
| ^
./esl_msafile_psiblast.c:195:30: note: 'block_seq_len' was declared here
195 | esl_pos_t block_seq_start, block_seq_len;
| ^~~~~~~~~~~~~
GEN esl_msafile_selex_utest
GEN esl_msafile_stockholm_utest
GEN esl_msaweight_utest
./esl_msaweight.c: In function 'esl_msaweight_IDFilter_adv':
./esl_msaweight.c:1035:9: warning: 'conscols_112' may be used uninitialized [-Wmaybe-uninitialized]
1035 | collect_counts(cfg, msa, conscols, ncons, ct, NULL);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./esl_msaweight.c:435:1: note: by argument 3 of type 'const int *' to 'collect_counts.isra.0' declared here
435 | collect_counts(const ESL_MSAWEIGHT_CFG *cfg, const ESL_MSA *msa, const int *conscols, int ncons, int **ct, ESL_MSAWEIGHT_DAT *dat)
| ^~~~~~~~~~~~~~
GEN esl_normal_utest
GEN esl_quicksort_utest
GEN esl_random_utest
GEN esl_rand64_utest
GEN esl_randomseq_utest
GEN esl_ratematrix_utest
GEN esl_red_black_utest
In function 'esl_red_black_doublekey_linked_list_test',
inlined from 'main' at ./esl_red_black.c:702:8:
./esl_red_black.c:563:5: warning: 'prev' may be used uninitialized [-Wmaybe-uninitialized]
563 | if(prev != head_ptr){
| ^
./esl_red_black.c: In function 'main':
./esl_red_black.c:546:28: note: 'prev' was declared here
546 | ESL_RED_BLACK_DOUBLEKEY *prev;
| ^~~~
GEN esl_recorder_utest
GEN esl_regexp_utest
GEN esl_rootfinder_utest
GEN esl_scorematrix_utest
GEN esl_sq_utest
GEN esl_sqio_utest
GEN esl_ssi_utest
GEN esl_stack_utest
GEN esl_stats_utest
GEN esl_stretchexp_utest
GEN esl_tree_utest
GEN esl_varint_utest
./esl_varint.c: In function 'esl_varint_google_decode':
./esl_varint.c:474:11: warning: 'grp' may be used uninitialized [-Wmaybe-uninitialized]
474 | if (grp & cmask) { status = eslEOD; goto ERROR; }
| ~~~~^~~~~~~
./esl_varint.c:464:12: note: 'grp' was declared here
464 | uint64_t grp; // current k-bit code group
| ^~~
GEN esl_vectorops_utest
GEN esl_weibull_utest
GEN esl_wuss_utest
./esl_wuss.c: In function 'esl_wuss2ct':
./esl_wuss.c:136:10: warning: 'status' may be used uninitialized [-Wmaybe-uninitialized]
136 | return status;
| ^~~~~~
./esl_wuss.c:56:14: note: 'status' was declared here
56 | int status; /* success or failure return status */
| ^~~~~~
GEN esl_sse_utest
GEN esl_avx_utest
GEN esl_avx512_utest
GEN esl_neon_utest
GEN esl_vmx_utest
SUBDIR miniapps
SUBDIR libdivsufsort
SUBDIR src
SUBDIR impl_sse
GEN build_utest
GEN generic_fwdback_utest
GEN generic_fwdback_chk_utest
GEN generic_msv_utest
GEN generic_stotrace_utest
./generic_stotrace.c: In function 'p7_GStochasticTrace':
./generic_stotrace.c:172:21: warning: 'scur' may be used uninitialized [-Wmaybe-uninitialized]
172 | if ((status = p7_trace_Append(tr, scur, k, i)) != eslOK) goto ERROR;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./generic_stotrace.c:57:11: note: 'scur' was declared here
57 | int scur, sprv;
| ^~~~
GEN generic_viterbi_utest
GEN hmmer_utest
GEN logsum_utest
GEN modelconfig_utest
GEN seqmodel_utest
GEN p7_alidisplay_utest
GEN p7_bg_utest
GEN p7_domain_utest
./p7_domain.c: In function 'p7_domain_Serialize':
./p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
191 | network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
198 | network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
203 | network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
208 | network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
213 | network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
218 | network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c: In function 'p7_domain_Deserialize':
./p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
341 | ret_obj->envsc = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
347 | ret_obj->domcorrection = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
353 | ret_obj->dombias = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
359 | ret_obj->oasc = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
365 | ret_obj->bitscore = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
371 | ret_obj->lnP = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
398 | ret_obj->scores_per_pos[i] = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
GEN p7_gmx_utest
GEN p7_gmxchk_utest
GEN p7_hit_utest
./p7_hit.c: In function 'p7_hit_Serialize':
./p7_hit.c:226:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
226 | network_64bit = esl_hton64(*((uint64_t *) &(obj->sortkey)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:231:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
231 | network_32bit = esl_hton32(*((uint32_t *) &(obj->score)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:236:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
236 | network_32bit = esl_hton32(*((uint32_t *) &(obj->pre_score)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:241:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
241 | network_32bit = esl_hton32(*((uint32_t *) &(obj->sum_score)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:246:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
246 | network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:251:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
251 | network_64bit = esl_hton64(*((uint64_t *) &(obj->pre_lnP)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:256:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
256 | network_64bit = esl_hton64(*((uint64_t *) &(obj->sum_lnP)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:261:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
261 | network_32bit = esl_hton32(*((uint32_t *) &(obj->nexpected)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c: In function 'p7_hit_Deserialize':
./p7_hit.c:408:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
408 | ret_obj->sortkey = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:414:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
414 | ret_obj->score = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:420:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
420 | ret_obj->pre_score = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:426:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
426 | ret_obj->sum_score = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:432:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
432 | ret_obj->lnP = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:438:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
438 | ret_obj->pre_lnP = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:444:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
444 | ret_obj->sum_lnP = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_hit.c:450:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
450 | ret_obj->nexpected = *((float *) &host_32bit);
| ~^~~~~~~~~~~~~~~~~~~~~~
GEN p7_hmmd_search_stats_utest
./p7_hmmd_search_stats.c: In function 'p7_hmmd_search_stats_Serialize':
./p7_hmmd_search_stats.c:89:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
89 | network_64bit = esl_hton64(*((uint64_t *) &(obj->elapsed))); // ow, this hurts, but is probably the best way to get the
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hmmd_search_stats.c:97:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
97 | network_64bit = esl_hton64(*((uint64_t *) &(obj->user)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hmmd_search_stats.c:103:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
103 | network_64bit = esl_hton64(*((uint64_t *) &(obj->sys)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hmmd_search_stats.c:109:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
109 | network_64bit = esl_hton64(*((uint64_t *) &(obj->Z)));
| ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_hmmd_search_stats.c:115:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
115 | network_64bit = esl_hton64(*((uint64_t *) &(obj->domZ)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_hmmd_search_stats.c: In function 'p7_hmmd_search_stats_Deserialize':
./p7_hmmd_search_stats.c:256:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
256 | ret_obj->elapsed = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_hmmd_search_stats.c:262:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
262 | ret_obj->user = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_hmmd_search_stats.c:268:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
268 | ret_obj->sys = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_hmmd_search_stats.c:274:18: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
274 | ret_obj->Z = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
./p7_hmmd_search_stats.c:280:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
280 | ret_obj->domZ = *((double *) &host_64bit);
| ~^~~~~~~~~~~~~~~~~~~~~~~
GEN p7_hmm_utest
GEN p7_hmmfile_utest
GEN p7_profile_utest
GEN p7_tophits_utest
In file included from /usr/include/stdio.h:906,
from ../easel/easel.h:22,
from ./p7_tophits.c:16:
In function 'fprintf',
inlined from 'p7_tophits_Targets' at ./p7_tophits.c:1142:12:
/usr/include/bits/stdio2.h:79:10: warning: 'posw' may be used uninitialized [-Wmaybe-uninitialized]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
./p7_tophits.c: In function 'p7_tophits_Targets':
./p7_tophits.c:1068:10: note: 'posw' was declared here
1068 | int posw;
| ^~~~
./p7_tophits.c: In function 'main':
./p7_tophits.c:2171:3: warning: 'key' may be used uninitialized [-Wmaybe-uninitialized]
2171 | p7_tophits_Add(h1, "last", NULL, NULL, -1.0, (float) key, key, (float) key, key, i, i, N, i, i, N, 1, 1, NULL);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./p7_tophits.c:2155:19: note: 'key' was declared here
2155 | double key;
| ^~~
GEN p7_trace_utest
GEN p7_scoredata_utest
GEN hmmpgmd2msa_utest
GEN hmmd_search_status_utest
CC itest_brute.o
GEN itest_brute
SUBDIR impl_sse
GEN decoding_utest
GEN fwdback_utest
GEN io_utest
GEN msvfilter_utest
GEN null2_utest
GEN optacc_utest
./optacc.c: In function 'p7_OATrace':
./optacc.c:255:21: warning: 'smax' may be used uninitialized [-Wmaybe-uninitialized]
255 | if ((status = p7_trace_AppendWithPP(tr, s1, k, i, postprob)) != eslOK) return status;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./optacc.c:398:10: note: 'smax' was declared here
398 | int smax, kmax;
| ^~~~
In function 'get_postprob',
inlined from 'p7_OATrace' at ./optacc.c:254:18:
./optacc.c:269:21: warning: 'kmax' may be used uninitialized [-Wmaybe-uninitialized]
269 | int q = (k-1) % Q; /* (q,r) is position of the current DP cell M(i,k) */
| ~~^~~
./optacc.c: In function 'p7_OATrace':
./optacc.c:398:16: note: 'kmax' was declared here
398 | int smax, kmax;
| ^~~~
GEN stotrace_utest
GEN vitfilter_utest
SUBDIR easel
SUBDIR miniapps
SUBDIR testsuite
Running Easel test suite...
exercise 1 [ easel-utest] ... ok.
exercise 2 [ alloc-utest] ... ok.
exercise 3 [ alphabet-utest] ... ok.
exercise 4 [ avx-utest] ... ok.
exercise 5 [ avx512-utest] ... ok.
exercise 6 [ bitfield-utest] ... ok.
exercise 7 [ buffer-utest] ... ok.
exercise 8 [ cluster-utest] ... ok.
exercise 9 [ cpu-utest] ... ok.
exercise 10 [ dirichlet-utest] ... ok.
exercise 11 [ distance-utest] ... ok.
exercise 12 [ dmatrix-utest] ... ok.
exercise 13 [ dsqdata-utest] ... ok.
exercise 14 [ exponential-utest] ... ok.
exercise 15 [ fileparser-utest] ... ok.
exercise 16 [ gamma-utest] ... ok.
exercise 17 [ gencode-utest] ... ok.
exercise 18 [ getopts-utest] ... ok.
exercise 19 [ graph-utest] ... ok.
exercise 20 [ gumbel-utest] ... ok.
exercise 21 [ heap-utest] ... ok.
exercise 22 [ histogram-utest] ... ok.
exercise 23 [ huffman-utest] ... ok.
exercise 24 [ hyperexp-utest] ... ok.
exercise 25 [ json-utest] ... ok.
exercise 26 [ keyhash-utest] ... ok.
exercise 27 [ matrixops-utest] ... ok.
exercise 28 [ mem-utest] ... ok.
exercise 29 [ minimizer-utest] ... ok.
exercise 30 [ mixdchlet-utest] ... ok.
exercise 31 [ msa-utest] ... ok.
exercise 32 [ msacluster-utest] ... ok.
exercise 33 [ msafile] ... ok.
exercise 34 [ msafile2] ... ok.
exercise 35 [ msafile-a2m] ... ok.
exercise 36 [ msafile-afa] ... ok.
exercise 37 [ msafile-clustal] ... ok.
exercise 38 [ msafile-phylip] ... ok.
exercise 39 [ msafile-psiblast] ... ok.
exercise 40 [ msafile-selex] ... ok.
exercise 41 [ msafile-stockholm] ... ok.
exercise 42 [ msaweight-utest] ... ok.
exercise 43 [ neon-utest] ... ok.
exercise 44 [ normal-utest] ... ok.
exercise 45 [ quicksort-utest] ... ok.
exercise 46 [ random-utest] ... ok.
exercise 47 [ rand64-utest] ... ok.
exercise 48 [ randomseq-utest] ... ok.
exercise 49 [ ratematrix-utest] ... ok.
exercise 50 [ recorder-utest] ... ok.
exercise 51 [ red_black-utest] ... ok.
exercise 52 [ regexp-utest] ... ok.
exercise 53 [ rootfinder-utest] ... ok.
exercise 54 [ scorematrix-utest] ... ok.
exercise 55 [ sq-utest] ... ok.
exercise 56 [ sqio-utest] ... ok.
exercise 57 [ sse-utest] ... ok.
exercise 58 [ ssi-utest] ... ok.
exercise 59 [ stack-utest] ... ok.
exercise 60 [ stats-utest] ... ok.
exercise 61 [ stretchexp-utest] ... ok.
exercise 62 [ tree-utest] ... ok.
exercise 63 [ varint-utest] ... ok.
exercise 64 [ vectorops-utest] ... ok.
exercise 65 [ vmx-utest] ... ok.
exercise 66 [ weibull-utest] ... ok.
exercise 67 [ wuss-utest] ... ok.
exercise 68 [ e2] ... ok.
exercise 69 [ degen-residues] ... ok.
exercise 70 [ ncbi-indices] ... ok.
exercise 71 [ blank-gf] ... ok.
exercise 72 [ esl-translate] ... ok.
exercise 73 [ esl-afetch] ... ok.
exercise 74 [ esl-alimanip] ... ok.
exercise 75 [ esl-alimap] ... ok.
exercise 76 [ esl-alimask] ... ok.
exercise 77 [ esl-alimerge] ... ok.
exercise 78 [ esl-alistat] ... ok.
exercise 79 [ esl-compalign] ... ok.
exercise 80 [ esl-construct] ... ok.
exercise 81 [ esl-mask] ... ok.
exercise 82 [ esl-seqrange] ... ok.
exercise 83 [ esl-shuffle] ... ok.
exercise 84 [ esl-ssdraw] ... ok.
All 84 exercises at level <= 2 passed.
System information:
Wed Dec 28 23:01:46 UTC 2022
Linux 94345065f58f4600a254cefdce73771a 6.0.8-300.fc37.x86_64 #1 SMP PREEMPT_DYNAMIC Fri Nov 11 15:09:04 UTC 2022 i686 GNU/Linux
SUBDIR testsuite
Running HMMER test suite...
exercise 1 [ hmmer] ... ok.
exercise 2 [ build] ... ok.
exercise 3 [ generic_fwdback] ... ok.
exercise 4 [ generic_msv] ... ok.
exercise 5 [ generic_stotrace] ... ok.
exercise 6 [ generic_viterbi] ... ok.
exercise 7 [ hmmd_search_status] ... ok.
exercise 8 [ logsum] ... ok.
exercise 9 [ modelconfig] ... ok.
exercise 10 [ seqmodel] ... ok.
exercise 11 [ p7_alidisplay] ... ok.
exercise 12 [ p7_bg] ... ok.
exercise 13 [ p7_domain] ... ok.
exercise 14 [ p7_gmx] ... ok.
exercise 15 [ p7_hit] ... ok.
exercise 16 [ p7_hmm] ... ok.
exercise 17 [ p7_hmmfile] ... ok.
exercise 18 [ p7_hmmd_search_stats] ... ok.
exercise 19 [ p7_profile] ... ok.
exercise 20 [ p7_tophits] ... ok.
exercise 21 [ p7_trace] ... ok.
exercise 22 [ p7_scoredata] ... ok.
exercise 23 [ decoding] ... ok.
exercise 24 [ fwdback] ... ok.
exercise 25 [ io] ... ok.
exercise 26 [ msvfilter] ... ok.
exercise 27 [ null2] ... ok.
exercise 28 [ optacc] ... ok.
exercise 29 [ stotrace] ... ok.
exercise 30 [ vitfilter] ... ok.
exercise 31 [ hmmpgmd2msa] ... ok.
exercise 32 [ hmmalign] ... ok.
exercise 33 [ hmmalign/-h] ... ok.
exercise 34 [ hmmalign/-o] ... ok.
exercise 35 [ hmmalign/--mapali] ... ok.
exercise 36 [ hmmalign/--trim] ... ok.
exercise 37 [ hmmalign/--amino] ... ok.
exercise 38 [ hmmalign/--informat] ... ok.
exercise 39 [ hmmalign/--outformat] ... ok.
exercise 40 [ hmmbuild] ... ok.
exercise 41 [ build/-h] ... ok.
exercise 42 [ build/-n] ... ok.
exercise 43 [ build/-o] ... ok.
exercise 44 [ build/-O] ... ok.
exercise 45 [ build/--amino] ... ok.
exercise 46 [ build/--dna] ... ok.
exercise 47 [ build/--rna] ... ok.
exercise 48 [ build/--fast] ... ok.
exercise 49 [ build/--hand] ... ok.
exercise 50 [ build/--symfrac] ... ok.
exercise 51 [ build/--fragthresh] ... ok.
exercise 52 [ build/--wpb] ... ok.
exercise 53 [ build/--wgsc] ... ok.
exercise 54 [ build/--wblosum] ... ok.
exercise 55 [ build/--wnone] ... ok.
exercise 56 [ build/--wid] ... ok.
exercise 57 [ build/--eent] ... ok.
exercise 58 [ build/--eclust] ... ok.
exercise 59 [ build/--enone] ... ok.
exercise 60 [ build/--eset] ... ok.
exercise 61 [ build/--ere] ... ok.
exercise 62 [ build/--esigma] ... ok.
exercise 63 [ build/--eid] ... ok.
exercise 64 [ build/--pnone] ... ok.
exercise 65 [ build/--plaplace] ... ok.
exercise 66 [ build/--EmL] ... ok.
exercise 67 [ build/--EmN] ... ok.
exercise 68 [ build/--EvL] ... ok.
exercise 69 [ build/--EvN] ... ok.
exercise 70 [ build/--EfL] ... ok.
exercise 71 [ build/--EfN] ... ok.
exercise 72 [ build/--Eft] ... ok.
exercise 73 [ build/--informat] ... ok.
exercise 74 [ build/--seed] ... ok.
exercise 75 [ search] ... ok.
exercise 76 [ search/-h] ... ok.
exercise 77 [ search/-o] ... ok.
exercise 78 [ search/-A] ... ok.
exercise 79 [ search/--tblout] ... ok.
exercise 80 [ search/--domtblout] ... ok.
exercise 81 [ search/--pfamtblout] ... ok.
exercise 82 [ search/--acc] ... ok.
exercise 83 [ search/--noali] ... ok.
exercise 84 [ search/--notextw] ... ok.
exercise 85 [ search/--textw] ... ok.
exercise 86 [ search/-E] ... ok.
exercise 87 [ search/-T] ... ok.
exercise 88 [ search/--domE] ... ok.
exercise 89 [ search/--domT] ... ok.
exercise 90 [ search/--incE] ... ok.
exercise 91 [ search/--incT] ... ok.
exercise 92 [ search/--incdomE] ... ok.
exercise 93 [ search/--incdomT] ... ok.
exercise 94 [ search/--cut_ga] ... ok.
exercise 95 [ search/--cut_nc] ... ok.
exercise 96 [ search/--cut_tc] ... ok.
exercise 97 [ search/--max] ... ok.
exercise 98 [ search/--F1] ... ok.
exercise 99 [ search/--F2] ... ok.
exercise 100 [ search/--F3] ... ok.
exercise 101 [ search/--nobias] ... ok.
exercise 102 [ search/--nonull2] ... ok.
exercise 103 [ search/-Z] ... ok.
exercise 104 [ search/--domZ] ... ok.
exercise 105 [ search/--seed] ... ok.
exercise 106 [ search/--tformat] ... ok.
exercise 107 [ hmmscan] ... ok.
exercise 108 [ scan/-h] ... ok.
exercise 109 [ scan/-o] ... ok.
exercise 110 [ scan/--tblout] ... ok.
exercise 111 [ scan/--domtblout] ... ok.
exercise 112 [ scan/--pfamtblout] ... ok.
exercise 113 [ scan/--acc] ... ok.
exercise 114 [ scan/--noali] ... ok.
exercise 115 [ scan/--notextw] ... ok.
exercise 116 [ scan/--textw] ... ok.
exercise 117 [ scan/-E] ... ok.
exercise 118 [ scan/-T] ... ok.
exercise 119 [ scan/--domE] ... ok.
exercise 120 [ scan/--domT] ... ok.
exercise 121 [ scan/--incE] ... ok.
exercise 122 [ scan/--incT] ... ok.
exercise 123 [ scan/--incdomE] ... ok.
exercise 124 [ scan/--incdomT] ... ok.
exercise 125 [ scan/--incdomT] ... ok.
exercise 126 [ scan/--cut_ga] ... ok.
exercise 127 [ scan/--cut_nc] ... ok.
exercise 128 [ scan/--cut_tc] ... ok.
exercise 129 [ scan/--max] ... ok.
exercise 130 [ scan/--F1] ... ok.
exercise 131 [ scan/--F2] ... ok.
exercise 132 [ scan/--F3] ... ok.
exercise 133 [ scan/--nobias] ... ok.
exercise 134 [ scan/--nonull2] ... ok.
exercise 135 [ scan/-Z] ... ok.
exercise 136 [ scan/--domZ] ... ok.
exercise 137 [ scan/--seed] ... ok.
exercise 138 [ scan/--qformat] ... ok.
exercise 139 [ scan/--cpu] ... ok.
exercise 140 [ jackhmmer] ... ok.
exercise 141 [ j/-h] ... ok.
exercise 142 [ j/-N] ... ok.
exercise 143 [ j/-o] ... ok.
exercise 144 [ j/-A] ... ok.
exercise 145 [ j/--tblout] ... ok.
exercise 146 [ j/--domtblout] ... ok.
exercise 147 [ j/--chkhmm] ... ok.
exercise 148 [ j/--chkali] ... ok.
exercise 149 [ j/--acc] ... ok.
exercise 150 [ j/--noali] ... ok.
exercise 151 [ j/--notextw] ... ok.
exercise 152 [ j/--textw] ... ok.
exercise 153 [ j/--popen] ... ok.
exercise 154 [ j/--pextend] ... ok.
exercise 155 [ j/--mxfile] ... ok.
exercise 156 [ j/-E] ... ok.
exercise 157 [ j/-T] ... ok.
exercise 158 [ j/--domE] ... ok.
exercise 159 [ j/--domT] ... ok.
exercise 160 [ j/--incE] ... ok.
exercise 161 [ j/--incT] ... ok.
exercise 162 [ j/--incdomE] ... ok.
exercise 163 [ j/--incdomT] ... ok.
exercise 164 [ j/--max] ... ok.
exercise 165 [ j/--F1] ... ok.
exercise 166 [ j/--F2] ... ok.
exercise 167 [ j/--F3] ... ok.
exercise 168 [ j/--nobias] ... ok.
exercise 169 [ j/--EmL] ... ok.
exercise 170 [ j/--EmN] ... ok.
exercise 171 [ j/--EvL] ... ok.
exercise 172 [ j/--EvN] ... ok.
exercise 173 [ j/--EfL] ... ok.
exercise 174 [ j/--EfN] ... ok.
exercise 175 [ j/--Eft] ... ok.
exercise 176 [ j/--nonull2] ... ok.
exercise 177 [ j/-Z] ... ok.
exercise 178 [ j/--domZ] ... ok.
exercise 179 [ j/--seed] ... ok.
exercise 180 [ j/--qformat] ... ok.
exercise 181 [ j/--tformat] ... ok.
exercise 182 [ phmmer] ... ok.
exercise 183 [ phmmer/-h] ... ok.
exercise 184 [ phmmer/-o] ... ok.
exercise 185 [ phmmer/-A] ... ok.
exercise 186 [ phmmer/--tblout] ... ok.
exercise 187 [ phmmer/--domtblout] ... ok.
exercise 188 [ phmmer/--pfamtblout] ... ok.
exercise 189 [ phmmer/--acc] ... ok.
exercise 190 [ phmmer/--noali] ... ok.
exercise 191 [ phmmer/--notextw] ... ok.
exercise 192 [ phmmer/--textw] ... ok.
exercise 193 [ phmmer/--popen] ... ok.
exercise 194 [ phmmer/--pextend] ... ok.
exercise 195 [ phmmer/--mxfile] ... ok.
exercise 196 [ phmmer/-E] ... ok.
exercise 197 [ phmmer/-T] ... ok.
exercise 198 [ phmmer/--domE] ... ok.
exercise 199 [ phmmer/--domT] ... ok.
exercise 200 [ phmmer/--incE] ... ok.
exercise 201 [ phmmer/--incT] ... ok.
exercise 202 [ phmmer/--incdomE] ... ok.
exercise 203 [ phmmer/--incdomT] ... ok.
exercise 204 [ phmmer/--max] ... ok.
exercise 205 [ phmmer/--F1] ... ok.
exercise 206 [ phmmer/--F2] ... ok.
exercise 207 [ phmmer/--F3] ... ok.
exercise 208 [ phmmer/--nobias] ... ok.
exercise 209 [ phmmer/--EmL] ... ok.
exercise 210 [ phmmer/--EmN] ... ok.
exercise 211 [ phmmer/--EvL] ... ok.
exercise 212 [ phmmer/--EvN] ... ok.
exercise 213 [ phmmer/--EfL] ... ok.
exercise 214 [ phmmer/--EfN] ... ok.
exercise 215 [ phmmer/--Eft] ... ok.
exercise 216 [ phmmer/--nonull2] ... ok.
exercise 217 [ phmmer/-Z] ... ok.
exercise 218 [ phmmer/--domZ] ... ok.
exercise 219 [ phmmer/--seed] ... ok.
exercise 220 [ phmmer/--qformat] ... ok.
exercise 221 [ phmmer/--tformat] ... ok.
exercise 222 [ nhmmer] ... ok.
exercise 223 [ nhmmer/-h] ... ok.
exercise 224 [ nhmmer/-o] ... ok.
exercise 225 [ nhmmer/-A] ... ok.
exercise 226 [ nhmmer/--tblout] ... ok.
exercise 227 [ nhmmer/--dfamtblout] ... ok.
exercise 228 [ nhmmer/--acc] ... ok.
exercise 229 [ nhmmer/--noali] ... ok.
exercise 230 [ nhmmer/--notextw] ... ok.
exercise 231 [ nhmmer/--textw] ... ok.
exercise 232 [ nhmmer/-E] ... ok.
exercise 233 [ nhmmer/-T] ... ok.
exercise 234 [ nhmmer/--incE] ... ok.
exercise 235 [ nhmmer/--incT] ... ok.
exercise 236 [ nhmmer/--max] ... ok.
exercise 237 [ nhmmer/--F1] ... ok.
exercise 238 [ nhmmer/--F2] ... ok.
exercise 239 [ nhmmer/--F3] ... ok.
exercise 240 [ nhmmer/--nobias] ... ok.
exercise 241 [ nhmmer/--nonull2] ... ok.
exercise 242 [ nhmmer/-Z] ... ok.
exercise 243 [ nhmmer/--seed] ... ok.
exercise 244 [ nhmmscan] ... ok.
exercise 245 [ nhmmscan/-h] ... ok.
exercise 246 [ nhmmscan/-o] ... ok.
exercise 247 [ nhmmscan/--tblout] ... ok.
exercise 248 [nhmmscan/--dfamtblout] ... ok.
exercise 249 [ nhmmscan/--acc] ... ok.
exercise 250 [ nhmmscan/--noali] ... ok.
exercise 251 [ nhmmscan/--notextw] ... ok.
exercise 252 [ nhmmscan/--textw] ... ok.
exercise 253 [ nhmmscan/-E] ... ok.
exercise 254 [ nhmmscan/-T] ... ok.
exercise 255 [ nhmmscan/--incE] ... ok.
exercise 256 [ nhmmscan/--incT] ... ok.
exercise 257 [ nhmmscan/--max] ... ok.
exercise 258 [ nhmmscan/--F1] ... ok.
exercise 259 [ nhmmscan/--F2] ... ok.
exercise 260 [ nhmmscan/--F3] ... ok.
exercise 261 [ nhmmscan/--nobias] ... ok.
exercise 262 [ nhmmscan/--nonull2] ... ok.
exercise 263 [ nhmmscan/-Z] ... ok.
exercise 264 [ nhmmscan/--seed] ... ok.
exercise 265 [ hmmemit] ... ok.
exercise 266 [ hmmemit/-h] ... ok.
exercise 267 [ hmmemit/-c] ... ok.
exercise 268 [ hmmemit/-o] ... ok.
exercise 269 [ hmmemit/-p] ... ok.
exercise 270 [ hmmemit/-N] ... ok.
exercise 271 [ hmmemit/-L] ... ok.
exercise 272 [ hmmemit/--local] ... ok.
exercise 273 [ hmmemit/--unilocal] ... ok.
exercise 274 [ hmmemit/--glocal] ... ok.
exercise 275 [ hmmemit/--uniglocal] ... ok.
exercise 276 [ hmmfetch] ... ok.
exercise 277 [ hmmstat] ... ok.
exercise 278 [ hmmlogo] ... ok.
exercise 279 [ hmmconvert] ... ok.
exercise 280 [ hmmsim] ... ok.
exercise 281 [ hmmbuild_variation] ... ok.
exercise 282 [ hmmscan_variation] ... ok.
exercise 283 [ hmmsearch_variation] ... ok.
exercise 284 [ phmmer_variation] ... ok.
exercise 285 [ mapali] ... ok.
exercise 286 [ fragments] ... ok.
exercise 287 [ nonresidues] ... ok.
exercise 288 [ opt-annotation] ... ok.
exercise 289 [ dup-names] ... ok.
exercise 290 [ mapali-again] ... ok.
exercise 291 [ delete-corruption] ... ok.
exercise 292 [ msa-integrity] ... ok.
exercise 293 [ hmmemit-consensus] ... ok.
exercise 294 [ hmmconvert] ... ok.
exercise 295 [ stdin_pipes] ... ok.
exercise 296 [ nhmmer_generic] ... ok.
exercise 297 [ hmmpgmd_ga] ... ok.
exercise 298 [ rewind] ... ok.
exercise 299 [ hmmpgmd_shard_ga] ... ok.
exercise 300 [ bad-fasta] ... ok.
exercise 301 [ brute-itest] ... ok.
exercise 302 [ hmmpress-itest] ... ok.
exercise 303 [ h39] ... ok.
exercise 304 [ h45] ... ok.
exercise 305 [ h50] ... ok.
exercise 306 [ h82] ... ok.
exercise 307 [ iss159] ... ok.
All 307 exercises at level <= 2 passed.
System information:
Wed Dec 28 23:02:01 UTC 2022
Linux 94345065f58f4600a254cefdce73771a 6.0.8-300.fc37.x86_64 #1 SMP PREEMPT_DYNAMIC Fri Nov 11 15:09:04 UTC 2022 i686 GNU/Linux
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: hmmer-3.3.2-2.fc38.i686
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.rol7VO
+ umask 022
+ cd /builddir/build/BUILD
+ cd hmmer-3.3.2
+ LICENSEDIR=/builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/share/licenses/hmmer
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/share/licenses/hmmer
+ cp -pr LICENSE /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/share/licenses/hmmer
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: hmmer = 3.3.2-2.fc38 hmmer(x86-32) = 3.3.2-2.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.11) libc.so.6(GLIBC_2.15) libc.so.6(GLIBC_2.17) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.2) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.33) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.4) libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.27) libm.so.6(GLIBC_2.29) rtld(GNU_HASH)
Processing files: hmmer-easel-3.3.2-2.fc38.i686
Provides: hmmer-easel = 3.3.2-2.fc38 hmmer-easel(x86-32) = 3.3.2-2.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.17) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.2) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.33) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.4) libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.29) rtld(GNU_HASH)
Processing files: hmmer-doc-3.3.2-2.fc38.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Cy3yyX
+ umask 022
+ cd /builddir/build/BUILD
+ cd hmmer-3.3.2
+ DOCDIR=/builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/share/doc/hmmer-doc
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/share/doc/hmmer-doc
+ cp -pr LICENSE /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/share/doc/hmmer-doc
+ cp -pr README.md /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/share/doc/hmmer-doc
+ cp -pr RELEASE-3.3.2.md /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/share/doc/hmmer-doc
+ cp -pr Userguide.pdf /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/share/doc/hmmer-doc
+ cp -pr tutorial/ /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386/usr/share/doc/hmmer-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: hmmer-doc = 3.3.2-2.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: hmmer-debugsource-3.3.2-2.fc38.i686
Provides: hmmer-debugsource = 3.3.2-2.fc38 hmmer-debugsource(x86-32) = 3.3.2-2.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: hmmer-debuginfo-3.3.2-2.fc38.i686
Provides: debuginfo(build-id) = 0d5860dfca0dcc171da07ab96116994423bbf432 debuginfo(build-id) = 10bc3942c7030d5a4434034d68a368451872b5a6 debuginfo(build-id) = 180e4beb33d2c829737b78715f33df2d820c81bf debuginfo(build-id) = 256fa8c9205f1e05d00b75a9d27e7ac2666d8609 debuginfo(build-id) = 27f565309fd2180d06bef8a7f8b723cbcea80156 debuginfo(build-id) = 2d0b0922a3fdad9b3828ebf3f50cb7197d9a0096 debuginfo(build-id) = 33e799fac7f4e50a842ab1754cff2911fa7b24bb debuginfo(build-id) = 3b5bb9cc646652a0fdcbefe6f34c13c7b036a1b7 debuginfo(build-id) = 93a48862bfafa45803532f8cad4feebf1d1da072 debuginfo(build-id) = a9a94923042801a8f2b61fb4fa8caca335940524 debuginfo(build-id) = a9c4e712eb4d93e74c3e4ba4ae49550be2dfb022 debuginfo(build-id) = aee1edc1d758dd407b8c14805497ba0cd434213f debuginfo(build-id) = b8d310f4f7a002883fa24dcd4c49c0d84ed08be4 debuginfo(build-id) = ccc16726bc85b97abe017d216dea16725e1a1611 debuginfo(build-id) = d6dc551e0b493ac2b8b7f5ba6ed9e1e23d87cad2 debuginfo(build-id) = e0efc6e1f924b90206373a09931bc65d4ef9087d debuginfo(build-id) = e20e635545217df2330570f891d1bec3b71fc384 debuginfo(build-id) = e296f7ca7e8a95d25612c313233c5aaf9d4390ad debuginfo(build-id) = e91ee0ea1bad90cbfecb3d2b3148aa0cb0e48007 hmmer-debuginfo = 3.3.2-2.fc38 hmmer-debuginfo(x86-32) = 3.3.2-2.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: hmmer-debugsource(x86-32) = 3.3.2-2.fc38
Processing files: hmmer-easel-debuginfo-3.3.2-2.fc38.i686
Provides: debuginfo(build-id) = 0e62924f2a3b0ee11e4d4a57c04f9ca98eacbc58 debuginfo(build-id) = 1609cf9e9710b2eba826e866cc31570167d1a2ab debuginfo(build-id) = 342ad779d75224377c47e7cfe51dda25941915c6 debuginfo(build-id) = 4cbfb41f168636915ec5d6185367a7046fa29c54 debuginfo(build-id) = 51b635bae35993a95d76c1c64e02a8131ff4de0f debuginfo(build-id) = 5bce1313bea0090edcff6abc71d572cd8ac45d1e debuginfo(build-id) = 70147cdde2d2d5d49fdac040543f9ce93ad09553 debuginfo(build-id) = 72fddaf82dab9701e27557c8090f31db7824f30a debuginfo(build-id) = a5a392e7d77bba248bd9505133451370fd5142db debuginfo(build-id) = a651e086f05847120807fca865bfa6e000fa4c08 debuginfo(build-id) = ada1f8fff634468cd28b01770b015875e24d80c8 debuginfo(build-id) = ae39b40b59ed012d61cea58dae4303ee4827a39c debuginfo(build-id) = b882a88ea210cc18d3cf4b630023b5949e45e69c debuginfo(build-id) = ba278c5b6ec79b66e15ad21ee5e16aa63453d191 debuginfo(build-id) = c25d5aeb56d1295337535abbd36e76d46aa84e40 debuginfo(build-id) = c70937173c1d6b87a5e92dbacc166216a192597f debuginfo(build-id) = d7bb6e3acddeb5a39c2868bd3c7fbff6d16c509a debuginfo(build-id) = ea3219bba740cb595dfeb0d1d5bdfdf7e5ebc166 debuginfo(build-id) = ec21b32a87f4ec992ed679a8ddcd1a40640c39d1 debuginfo(build-id) = ee339731fbc6e3e3a134ac410029f8f99f8afd60 debuginfo(build-id) = f0c7f01f24c8f746a9759f11d8ddd8cf13f79976 debuginfo(build-id) = f6681a3bdb72a02d631c686e1b7ac94bb5e829a8 debuginfo(build-id) = fadef7d9d5d3a8b09345e2516bfade78d367f2d9 debuginfo(build-id) = fec7f1f4e5e6912c324b4e3f324a20e7582a6803 hmmer-easel-debuginfo = 3.3.2-2.fc38 hmmer-easel-debuginfo(x86-32) = 3.3.2-2.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: hmmer-debugsource(x86-32) = 3.3.2-2.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386
Wrote: /builddir/build/RPMS/hmmer-easel-debuginfo-3.3.2-2.fc38.i686.rpm
Wrote: /builddir/build/RPMS/hmmer-debuginfo-3.3.2-2.fc38.i686.rpm
Wrote: /builddir/build/RPMS/hmmer-debugsource-3.3.2-2.fc38.i686.rpm
Wrote: /builddir/build/RPMS/hmmer-3.3.2-2.fc38.i686.rpm
Wrote: /builddir/build/RPMS/hmmer-easel-3.3.2-2.fc38.i686.rpm
Wrote: /builddir/build/RPMS/hmmer-doc-3.3.2-2.fc38.noarch.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.dcqRRi
+ umask 022
+ cd /builddir/build/BUILD
+ cd hmmer-3.3.2
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/hmmer-3.3.2-2.fc38.i386
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.julfPh
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf hmmer-3.3.2 hmmer-3.3.2.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild hmmer-3.3.2-2.fc38.src.rpm
Finish: build phase for hmmer-3.3.2-2.fc38.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1672268095.305560/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-i686-1672268095.305560/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-i686-1672268095.305560/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/hmmer-3.3.2-2.fc38.src.rpm) Config(child) 6 minutes 23 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool