Name: hmmer Version: 3.3.2 Release: 2%{?dist} Summary: Biosequence analysis using profile hidden Markov models License: GPLv3 URL: http://hmmer.org Source0: http://eddylab.org/software/hmmer/hmmer-%{version}.tar.gz BuildRequires: perl BuildRequires: make # HMMER3 requires SSE or VMX vector instructions - Bug 2112825 # VMX only works for big endian in HMMER3 # author says more arch will be supported in HMMER4 (no ETA) ExcludeArch: aarch64 ppc64le s390x %description HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). %package easel Summary: Easel collection of small tools %description easel Collection of additional small tools ("miniapps") from the Easel library. %package doc Summary: Documentation for hmmer BuildArch: noarch %description doc This package includes documentation files for the hmmer software package. %prep %setup -q %build %configure make %{?_smp_mflags} %check make check %install rm -rf $RPM_BUILD_ROOT make install DESTDIR=$RPM_BUILD_ROOT (cd easel; make install DESTDIR=$RPM_BUILD_ROOT) %files %license LICENSE %{_bindir}/hmm* %{_bindir}/alimask %{_bindir}/jackhmmer %{_bindir}/makehmmerdb %{_bindir}/nhmmer %{_bindir}/nhmmscan %{_bindir}/phmmer %{_mandir}/man1/hmm* %{_mandir}/man1/alimask* %{_mandir}/man1/jackhmmer* %{_mandir}/man1/makehmmerdb* %{_mandir}/man1/nhmmer* %{_mandir}/man1/nhmmscan* %{_mandir}/man1/phmmer* %files easel %{_bindir}/easel %{_bindir}/esl-* %{_mandir}/man1/esl-* %files doc %doc LICENSE README.md RELEASE-%{version}.md Userguide.pdf tutorial/ %changelog * Mon Aug 1 2022 Christian Iseli - 3.3.2-2 - Add ExcludeArch #2112825 * Sun Jul 31 2022 Christian Iseli - 3.3.2-1 - Update to new upstream version * Thu Jul 21 2022 Fedora Release Engineering - 3.1b2-18 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Thu Jan 20 2022 Fedora Release Engineering - 3.1b2-17 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Thu Jul 22 2021 Fedora Release Engineering - 3.1b2-16 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Tue Jan 26 2021 Fedora Release Engineering - 3.1b2-15 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Tue Jul 28 2020 Fedora Release Engineering - 3.1b2-14 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Wed Jan 29 2020 Fedora Release Engineering - 3.1b2-13 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Thu Jul 25 2019 Fedora Release Engineering - 3.1b2-12 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild * Fri Feb 01 2019 Fedora Release Engineering - 3.1b2-11 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Fri Jul 13 2018 Fedora Release Engineering - 3.1b2-10 - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild * Wed Feb 07 2018 Fedora Release Engineering - 3.1b2-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild * Wed Nov 08 2017 Christian Iseli - 3.1b2-8 - Add missing BuildRequires for perl - needed in the test suite - #1423711 fix FTBFS * Wed Aug 02 2017 Fedora Release Engineering - 3.1b2-7 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild * Wed Jul 26 2017 Fedora Release Engineering - 3.1b2-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild * Fri Feb 10 2017 Fedora Release Engineering - 3.1b2-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild * Wed Feb 03 2016 Fedora Release Engineering - 3.1b2-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild * Sat Nov 28 2015 Christian Iseli - 3.1b2-3 - #1284297 provide -static package as per guidelines - try to fix build failure on power arch * Wed Jun 17 2015 Fedora Release Engineering - 3.1b2-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild * Wed May 27 2015 Christian Iseli - 3.1b2-1 - Update to new upstream version * Sat Feb 28 2015 Christian Iseli - 3.1b1-1 - Update to new upstream version - Split -devel and -doc subpackages - perl script fix no longer needed * Sat Aug 16 2014 Fedora Release Engineering - 3.0-10 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild * Sat Jun 07 2014 Fedora Release Engineering - 3.0-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild * Sat Aug 03 2013 Fedora Release Engineering - 3.0-8 - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild * Mon Mar 25 2013 Christian Iseli - 3.0-7 - BuildRoot is no longer necessary - BuildRequire autoconf and run autoreconf prior to configure (#925551) * Thu Feb 14 2013 Fedora Release Engineering - 3.0-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild * Fri Jul 20 2012 Christian Iseli - 3.0-5 - Fix build failure due to old (perl4) code in the test suite * Thu Jul 19 2012 Fedora Release Engineering - 3.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild * Fri Jan 13 2012 Fedora Release Engineering - 3.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild * Wed Feb 09 2011 Fedora Release Engineering - 3.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild * Tue Jul 20 2010 Christian Iseli - 3.0-1 - New upstream version 3.0 - License is now GPLv3 - configure defaults to multi-threaded - make install now uses DESTDIR - copy manpages (rule missing in Makefile, apparently) * Fri Jul 24 2009 Fedora Release Engineering - 2.3.2-11 - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild * Tue Feb 24 2009 Fedora Release Engineering - 2.3.2-10 - Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild * Mon Feb 23 2009 Christian Iseli - 2.3.2-9 - Rebuild for F-11 - Change URL and Source0 links to new location * Mon Feb 18 2008 Fedora Release Engineering - 2.3.2-8 - Autorebuild for GCC 4.3 * Thu Aug 16 2007 Christian Iseli - 2.3.2-7 - Fix License tag to GPLv2+. * Tue Sep 05 2006 Christian Iseli - 2.3.2-6 - Rebuild for FC 6. * Wed Feb 15 2006 Christian Iseli - 2.3.2-5 - Minor spec cleanup. Rebuild for FE 5. * Fri Dec 23 2005 Christian Iseli - 2.3.2-4 - Rebuild with gcc-4.1. * Mon Aug 08 2005 Christian Iseli - 2.3.2-3 - Removed altivec switch for ppc: apparently, it only works using Apple's GCC compiler. * Sat Aug 06 2005 Christian Iseli - 2.3.2-2 - Fix spec file according to review. * Fri Aug 05 2005 Christian Iseli - 2.3.2-1 - Create spec file.