Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-lfpy.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1672357602.411779/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.66jkvpml:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.66jkvpml:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '16a23dfc16864d7b930ac4c4bacc730b', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1672357602.411779/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.66jkvpml:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-lfpy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1669593600 Wrote: /builddir/build/SRPMS/python-lfpy-2.2.6-5.fc38.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-lfpy.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1672357602.411779/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.66jkvpml:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.66jkvpml:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '245ab6e01730471380a84091891188c5', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1672357602.411779/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.66jkvpml:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-lfpy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1669593600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.R7GqZb + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf LFPy-2.2.6 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/LFPy-2.2.6.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd LFPy-2.2.6 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + sed -i '/mpi4py/ d' setup.py ++ find . -type f -name '*.py' + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./setup.py + touch -r ./setup.py ./setup.py.new + mv ./setup.py.new ./setup.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_suppl.py + touch -r ./examples/example_suppl.py ./examples/example_suppl.py.new + mv ./examples/example_suppl.py.new ./examples/example_suppl.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_network/example_network_to_file.py + touch -r ./examples/example_network/example_network_to_file.py ./examples/example_network/example_network_to_file.py.new + mv ./examples/example_network/example_network_to_file.py.new ./examples/example_network/example_network_to_file.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_network/example_network_stim.py + touch -r ./examples/example_network/example_network_stim.py ./examples/example_network/example_network_stim.py.new + mv ./examples/example_network/example_network_stim.py.new ./examples/example_network/example_network_stim.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_network/example_network_population.py + touch -r ./examples/example_network/example_network_population.py ./examples/example_network/example_network_population.py.new + mv ./examples/example_network/example_network_population.py.new ./examples/example_network/example_network_population.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_network/example_network_cell.py + touch -r ./examples/example_network/example_network_cell.py ./examples/example_network/example_network_cell.py.new + mv ./examples/example_network/example_network_cell.py.new ./examples/example_network/example_network_cell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_network/example_network.py + touch -r ./examples/example_network/example_network.py ./examples/example_network/example_network.py.new + mv ./examples/example_network/example_network.py.new ./examples/example_network/example_network.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_mpi_2.py + touch -r ./examples/example_mpi_2.py ./examples/example_mpi_2.py.new + mv ./examples/example_mpi_2.py.new ./examples/example_mpi_2.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_mpi.py + touch -r ./examples/example_mpi.py ./examples/example_mpi.py.new + mv ./examples/example_mpi.py.new ./examples/example_mpi.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_loadL5bPCmodelsEH.py + touch -r ./examples/example_loadL5bPCmodelsEH.py ./examples/example_loadL5bPCmodelsEH.py.new + mv ./examples/example_loadL5bPCmodelsEH.py.new ./examples/example_loadL5bPCmodelsEH.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_anisotropy.py + touch -r ./examples/example_anisotropy.py ./examples/example_anisotropy.py.new + mv ./examples/example_anisotropy.py.new ./examples/example_anisotropy.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_MEA.py + touch -r ./examples/example_MEA.py ./examples/example_MEA.py.new + mv ./examples/example_MEA.py.new ./examples/example_MEA.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_LFPyCellTemplate.py + touch -r ./examples/example_LFPyCellTemplate.py ./examples/example_LFPyCellTemplate.py.new + mv ./examples/example_LFPyCellTemplate.py.new ./examples/example_LFPyCellTemplate.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_EPFL_neurons.py + touch -r ./examples/example_EPFL_neurons.py ./examples/example_EPFL_neurons.py.new + mv ./examples/example_EPFL_neurons.py.new ./examples/example_EPFL_neurons.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_EEG.py + touch -r ./examples/example_EEG.py ./examples/example_EEG.py.new + mv ./examples/example_EEG.py.new ./examples/example_EEG.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_ECoG_4sphere.py + touch -r ./examples/example_ECoG_4sphere.py ./examples/example_ECoG_4sphere.py.new + mv ./examples/example_ECoG_4sphere.py.new ./examples/example_ECoG_4sphere.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_ECoG.py + touch -r ./examples/example_ECoG.py ./examples/example_ECoG.py.new + mv ./examples/example_ECoG.py.new ./examples/example_ECoG.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_7_8/figure_7_8.py + touch -r ./examples/bioRxiv281717/figure_7_8/figure_7_8.py ./examples/bioRxiv281717/figure_7_8/figure_7_8.py.new + mv ./examples/bioRxiv281717/figure_7_8/figure_7_8.py.new ./examples/bioRxiv281717/figure_7_8/figure_7_8.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_7_8/example_parallel_network_plotting.py + touch -r ./examples/bioRxiv281717/figure_7_8/example_parallel_network_plotting.py ./examples/bioRxiv281717/figure_7_8/example_parallel_network_plotting.py.new + mv ./examples/bioRxiv281717/figure_7_8/example_parallel_network_plotting.py.new ./examples/bioRxiv281717/figure_7_8/example_parallel_network_plotting.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameterspace.py + touch -r ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameterspace.py ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameterspace.py.new + mv ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameterspace.py.new ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameterspace.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameters.py + touch -r ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameters.py ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameters.py.new + mv ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameters.py.new ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameters.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_7_8/example_parallel_network_methods.py + touch -r ./examples/bioRxiv281717/figure_7_8/example_parallel_network_methods.py ./examples/bioRxiv281717/figure_7_8/example_parallel_network_methods.py.new + mv ./examples/bioRxiv281717/figure_7_8/example_parallel_network_methods.py.new ./examples/bioRxiv281717/figure_7_8/example_parallel_network_methods.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_7_8/example_parallel_network.py + touch -r ./examples/bioRxiv281717/figure_7_8/example_parallel_network.py ./examples/bioRxiv281717/figure_7_8/example_parallel_network.py.new + mv ./examples/bioRxiv281717/figure_7_8/example_parallel_network.py.new ./examples/bioRxiv281717/figure_7_8/example_parallel_network.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_6.py + touch -r ./examples/bioRxiv281717/figure_6.py ./examples/bioRxiv281717/figure_6.py.new + mv ./examples/bioRxiv281717/figure_6.py.new ./examples/bioRxiv281717/figure_6.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_5.py + touch -r ./examples/bioRxiv281717/figure_5.py ./examples/bioRxiv281717/figure_5.py.new + mv ./examples/bioRxiv281717/figure_5.py.new ./examples/bioRxiv281717/figure_5.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_4.py + touch -r ./examples/bioRxiv281717/figure_4.py ./examples/bioRxiv281717/figure_4.py.new + mv ./examples/bioRxiv281717/figure_4.py.new ./examples/bioRxiv281717/figure_4.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_2.py + touch -r ./examples/bioRxiv281717/figure_2.py ./examples/bioRxiv281717/figure_2.py.new + mv ./examples/bioRxiv281717/figure_2.py.new ./examples/bioRxiv281717/figure_2.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/example_parallel_network_plotting.py + touch -r ./examples/bioRxiv281717/example_parallel_network_plotting.py ./examples/bioRxiv281717/example_parallel_network_plotting.py.new + mv ./examples/bioRxiv281717/example_parallel_network_plotting.py.new ./examples/bioRxiv281717/example_parallel_network_plotting.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/example_parallel_network_parameters.py + touch -r ./examples/bioRxiv281717/example_parallel_network_parameters.py ./examples/bioRxiv281717/example_parallel_network_parameters.py.new + mv ./examples/bioRxiv281717/example_parallel_network_parameters.py.new ./examples/bioRxiv281717/example_parallel_network_parameters.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/example_parallel_network_methods.py + touch -r ./examples/bioRxiv281717/example_parallel_network_methods.py ./examples/bioRxiv281717/example_parallel_network_methods.py.new + mv ./examples/bioRxiv281717/example_parallel_network_methods.py.new ./examples/bioRxiv281717/example_parallel_network_methods.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/example_parallel_network.py + touch -r ./examples/bioRxiv281717/example_parallel_network.py ./examples/bioRxiv281717/example_parallel_network.py.new + mv ./examples/bioRxiv281717/example_parallel_network.py.new ./examples/bioRxiv281717/example_parallel_network.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./doc/conf.py + touch -r ./doc/conf.py ./doc/conf.py.new + mv ./doc/conf.py.new ./doc/conf.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/version.py + touch -r ./LFPy/version.py ./LFPy/version.py.new + mv ./LFPy/version.py.new ./LFPy/version.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/tools.py + touch -r ./LFPy/tools.py ./LFPy/tools.py.new + mv ./LFPy/tools.py.new ./LFPy/tools.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_tools.py + touch -r ./LFPy/test/test_tools.py ./LFPy/test/test_tools.py.new + mv ./LFPy/test/test_tools.py.new ./LFPy/test/test_tools.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_templatecell.py + touch -r ./LFPy/test/test_templatecell.py ./LFPy/test/test_templatecell.py.new + mv ./LFPy/test/test_templatecell.py.new ./LFPy/test/test_templatecell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_recextelectrode.py + touch -r ./LFPy/test/test_recextelectrode.py ./LFPy/test/test_recextelectrode.py.new + mv ./LFPy/test/test_recextelectrode.py.new ./LFPy/test/test_recextelectrode.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_pointprocess.py + touch -r ./LFPy/test/test_pointprocess.py ./LFPy/test/test_pointprocess.py.new + mv ./LFPy/test/test_pointprocess.py.new ./LFPy/test/test_pointprocess.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_networkcell.py + touch -r ./LFPy/test/test_networkcell.py ./LFPy/test/test_networkcell.py.new + mv ./LFPy/test/test_networkcell.py.new ./LFPy/test/test_networkcell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_network.py + touch -r ./LFPy/test/test_network.py ./LFPy/test/test_network.py.new + mv ./LFPy/test/test_network.py.new ./LFPy/test/test_network.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_morphology_import.py + touch -r ./LFPy/test/test_morphology_import.py ./LFPy/test/test_morphology_import.py.new + mv ./LFPy/test/test_morphology_import.py.new ./LFPy/test/test_morphology_import.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_misc.py + touch -r ./LFPy/test/test_misc.py ./LFPy/test/test_misc.py.new + mv ./LFPy/test/test_misc.py.new ./LFPy/test/test_misc.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_lfpcalc.py + touch -r ./LFPy/test/test_lfpcalc.py ./LFPy/test/test_lfpcalc.py.new + mv ./LFPy/test/test_lfpcalc.py.new ./LFPy/test/test_lfpcalc.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_inputgenerators.py + touch -r ./LFPy/test/test_inputgenerators.py ./LFPy/test/test_inputgenerators.py.new + mv ./LFPy/test/test_inputgenerators.py.new ./LFPy/test/test_inputgenerators.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_imem.py + touch -r ./LFPy/test/test_imem.py ./LFPy/test/test_imem.py.new + mv ./LFPy/test/test_imem.py.new ./LFPy/test/test_imem.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_eegmegcalc.py + touch -r ./LFPy/test/test_eegmegcalc.py ./LFPy/test/test_eegmegcalc.py.new + mv ./LFPy/test/test_eegmegcalc.py.new ./LFPy/test/test_eegmegcalc.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_cell.py + touch -r ./LFPy/test/test_cell.py ./LFPy/test/test_cell.py.new + mv ./LFPy/test/test_cell.py.new ./LFPy/test/test_cell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_alias_method.py + touch -r ./LFPy/test/test_alias_method.py ./LFPy/test/test_alias_method.py.new + mv ./LFPy/test/test_alias_method.py.new ./LFPy/test/test_alias_method.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/common.py + touch -r ./LFPy/test/common.py ./LFPy/test/common.py.new + mv ./LFPy/test/common.py.new ./LFPy/test/common.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/__init__.py + touch -r ./LFPy/test/__init__.py ./LFPy/test/__init__.py.new + mv ./LFPy/test/__init__.py.new ./LFPy/test/__init__.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/templatecell.py + touch -r ./LFPy/templatecell.py ./LFPy/templatecell.py.new + mv ./LFPy/templatecell.py.new ./LFPy/templatecell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/run_simulation.py + touch -r ./LFPy/run_simulation.py ./LFPy/run_simulation.py.new + mv ./LFPy/run_simulation.py.new ./LFPy/run_simulation.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/pointprocess.py + touch -r ./LFPy/pointprocess.py ./LFPy/pointprocess.py.new + mv ./LFPy/pointprocess.py.new ./LFPy/pointprocess.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/network.py + touch -r ./LFPy/network.py ./LFPy/network.py.new + mv ./LFPy/network.py.new ./LFPy/network.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/inputgenerators.py + touch -r ./LFPy/inputgenerators.py ./LFPy/inputgenerators.py.new + mv ./LFPy/inputgenerators.py.new ./LFPy/inputgenerators.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/eegmegcalc.py + touch -r ./LFPy/eegmegcalc.py ./LFPy/eegmegcalc.py.new + mv ./LFPy/eegmegcalc.py.new ./LFPy/eegmegcalc.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/cell.py + touch -r ./LFPy/cell.py ./LFPy/cell.py.new + mv ./LFPy/cell.py.new ./LFPy/cell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/alias_method.py + touch -r ./LFPy/alias_method.py ./LFPy/alias_method.py.new + mv ./LFPy/alias_method.py.new ./LFPy/alias_method.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/__init__.py + touch -r ./LFPy/__init__.py ./LFPy/__init__.py.new + mv ./LFPy/__init__.py.new ./LFPy/__init__.py + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.4BEFBf + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd LFPy-2.2.6 + mkdir -p /builddir/build/BUILD/LFPy-2.2.6/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + TMPDIR=/builddir/build/BUILD/LFPy-2.2.6/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/LFPy-2.2.6/pyproject-wheeldir Processing /builddir/build/BUILD/LFPy-2.2.6 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) /builddir/build/BUILD/LFPy-2.2.6/LFPy/test Mod files: "./expsyni.mod" "./sinsyn.mod" Creating x86_64 directory for .o files. COBJS='' -> Compiling mod_func.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I. -I/usr/include -fPIC -c mod_func.c -o mod_func.o -> NMODL ../expsyni.mod -> NMODL ../sinsyn.mod (cd ".."; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl expsyni.mod -o "/builddir/build/BUILD/LFPy-2.2.6/LFPy/test/x86_64") (cd ".."; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl sinsyn.mod -o "/builddir/build/BUILD/LFPy-2.2.6/LFPy/test/x86_64") Translating expsyni.mod into /builddir/build/BUILD/LFPy-2.2.6/LFPy/test/x86_64/expsyni.c Thread Safe Translating sinsyn.mod into /builddir/build/BUILD/LFPy-2.2.6/LFPy/test/x86_64/sinsyn.c Thread Safe -> Compiling expsyni.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I".." -I. -I/usr/include -fPIC -c expsyni.c -o expsyni.o -> Compiling sinsyn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I".." -I. -I/usr/include -fPIC -c sinsyn.c -o sinsyn.o expsyni.c:115:34: warning: missing braces around initializer [-Wmissing-braces] 115 | static VoidFunc hoc_intfunc[] = { | ^ 116 | 0,0 | { 117 | }; | } expsyni.c:118:38: warning: missing braces around initializer [-Wmissing-braces] 118 | static Member_func _member_func[] = { | ^ 119 | "loc", _hoc_loc_pnt, | { } 120 | "has_loc", _hoc_has_loc, | { } 121 | "get_loc", _hoc_get_loc_pnt, | { } 122 | "exp_current", _hoc_exp_current, | { } 123 | "update_queue", _hoc_update_queue, | { } 124 | 0, 0 | { 125 | }; | } expsyni.c:132:44: warning: missing braces around initializer [-Wmissing-braces] 132 | static HocParmLimits _hoc_parm_limits[] = { | ^ 133 | "tau", 1e-09, 1e+09, | { { }} 134 | 0,0,0 | { { 135 | }; | }} expsyni.c:136:42: warning: missing braces around initializer [-Wmissing-braces] 136 | static HocParmUnits _hoc_parm_units[] = { | ^ 137 | "tau", "ms", | { } 138 | "i", "nA", | { } 139 | 0,0 | { 140 | }; | } expsyni.c:142:33: warning: missing braces around initializer [-Wmissing-braces] 142 | static DoubScal hoc_scdoub[] = { | ^ 143 | 0,0 | { 144 | }; | } expsyni.c:145:31: warning: missing braces around initializer [-Wmissing-braces] 145 | static DoubVec hoc_vdoub[] = { | ^ 146 | 0,0,0 | { 147 | }; | } expsyni.c: In function ‘nrn_alloc’: expsyni.c:172:15: warning: unused variable ‘prop_ion’ [-Wunused-variable] 172 | Prop *prop_ion; | ^~~~~~~~ expsyni.c: In function ‘_expsyni_reg’: expsyni.c:201:13: warning: unused variable ‘_vectorized’ [-Wunused-variable] 201 | int _vectorized = 1; | ^~~~~~~~~~~ expsyni.c: In function ‘update_queue_ExpSynI’: expsyni.c:233:9: warning: unused variable ‘_lk’ [-Wunused-variable] 233 | double _lk ; | ^~~ expsyni.c: In function ‘_net_receive__ExpSynI’: expsyni.c:278:38: warning: variable ‘_thread’ set but not used [-Wunused-but-set-variable] 278 | { double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt; | ^~~~~~~ expsyni.c:278:23: warning: variable ‘_ppvar’ set but not used [-Wunused-but-set-variable] 278 | { double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt; | ^~~~~~ expsyni.c: In function ‘initmodel’: expsyni.c:293:18: warning: unused variable ‘_save’ [-Wunused-variable] 293 | int _i; double _save;{ | ^~~~~ expsyni.c:293:7: warning: unused variable ‘_i’ [-Wunused-variable] 293 | int _i; double _save;{ | ^~ expsyni.c: In function ‘_nrn_current__ExpSynI’: expsyni.c:328:11: warning: unused variable ‘_lk’ [-Wunused-variable] 328 | double _lk , _lexpired_spikes , _lx ; | ^~~ expsyni.c: In function ‘_nrn_jacob__ExpSynI’: expsyni.c:386:35: warning: variable ‘_thread’ set but not used [-Wunused-but-set-variable] 386 | double* _p; Datum* _ppvar; Datum* _thread; | ^~~~~~~ expsyni.c:386:20: warning: unused variable ‘_ppvar’ [-Wunused-variable] 386 | double* _p; Datum* _ppvar; Datum* _thread; | ^~~~~~ expsyni.c: In function ‘_initlists’: expsyni.c:417:6: warning: unused variable ‘_i’ [-Wunused-variable] 417 | int _i; static int _first = 1; | ^~ expsyni.c:416:21: warning: unused variable ‘_p’ [-Wunused-variable] 416 | double _x; double* _p = &_x; | ^~ expsyni.c: At top level: expsyni.c:413:13: warning: ‘terminal’ defined but not used [-Wunused-function] 413 | static void terminal(){} | ^~~~~~~~ expsyni.c:229:13: warning: ‘_modl_cleanup’ defined but not used [-Wunused-function] 229 | static void _modl_cleanup(){ _match_recurse=1;} | ^~~~~~~~~~~~~ expsyni.c:227:12: warning: ‘_ninits’ defined but not used [-Wunused-variable] 227 | static int _ninits = 0; | ^~~~~~~ expsyni.c:226:12: warning: ‘error’ defined but not used [-Wunused-variable] 226 | static int error; | ^~~~~ expsyni.c:224:14: warning: ‘modelname’ defined but not used [-Wunused-variable] 224 | static char *modelname = "Exponential-function synaptic current, with NET_RECEIVE"; | ^~~~~~~~~ expsyni.c:223:12: warning: ‘_reset’ defined but not used [-Wunused-variable] 223 | static int _reset; | ^~~~~~ expsyni.c:148:16: warning: ‘_sav_indep’ defined but not used [-Wunused-variable] 148 | static double _sav_indep; | ^~~~~~~~~~ expsyni.c:110:14: warning: ‘_hoc_setdata’ defined but not used [-Wunused-function] 110 | static void _hoc_setdata(void* _vptr) { Prop* _prop; | ^~~~~~~~~~~~ expsyni.c: In function ‘update_queue_ExpSynI’: expsyni.c:240:8: warning: ‘_lupdate_queue’ is used uninitialized [-Wuninitialized] 240 | return _lupdate_queue; | ^~~~~~~~~~~~~~ expsyni.c:232:11: note: ‘_lupdate_queue’ was declared here 232 | double _lupdate_queue; | ^~~~~~~~~~~~~~ sinsyn.c:115:34: warning: missing braces around initializer [-Wmissing-braces] 115 | static VoidFunc hoc_intfunc[] = { | ^ 116 | 0,0 | { 117 | }; | } sinsyn.c:118:38: warning: missing braces around initializer [-Wmissing-braces] 118 | static Member_func _member_func[] = { | ^ 119 | "loc", _hoc_loc_pnt, | { } 120 | "has_loc", _hoc_has_loc, | { } 121 | "get_loc", _hoc_get_loc_pnt, | { } 122 | 0, 0 | { 123 | }; | } sinsyn.c:128:44: warning: missing braces around initializer [-Wmissing-braces] 128 | static HocParmLimits _hoc_parm_limits[] = { | ^ 129 | 0,0,0 | { { 130 | }; | }} sinsyn.c:131:42: warning: missing braces around initializer [-Wmissing-braces] 131 | static HocParmUnits _hoc_parm_units[] = { | ^ 132 | "del", "ms", | { } 133 | "dur", "ms", | { } 134 | "pkamp", "nA", | { } 135 | "freq", "Hz", | { } 136 | "bias", "nA", | { } 137 | "i", "nA", | { } 138 | 0,0 | { 139 | }; | } sinsyn.c:141:33: warning: missing braces around initializer [-Wmissing-braces] 141 | static DoubScal hoc_scdoub[] = { | ^ 142 | "PI_SinSyn", &PI_SinSyn, | { } 143 | 0,0 | { 144 | }; | } sinsyn.c:145:31: warning: missing braces around initializer [-Wmissing-braces] 145 | static DoubVec hoc_vdoub[] = { | ^ 146 | 0,0,0 | { 147 | }; | } sinsyn.c: In function ‘nrn_alloc’: sinsyn.c:176:15: warning: unused variable ‘prop_ion’ [-Wunused-variable] 176 | Prop *prop_ion; | ^~~~~~~~ sinsyn.c: In function ‘_sinsyn_reg’: sinsyn.c:210:13: warning: unused variable ‘_vectorized’ [-Wunused-variable] 210 | int _vectorized = 1; | ^~~~~~~~~~~ sinsyn.c: In function ‘_net_receive__SinSyn’: sinsyn.c:241:38: warning: variable ‘_thread’ set but not used [-Wunused-but-set-variable] 241 | { double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt; | ^~~~~~~ sinsyn.c:241:23: warning: variable ‘_ppvar’ set but not used [-Wunused-but-set-variable] 241 | { double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt; | ^~~~~~ sinsyn.c: In function ‘initmodel’: sinsyn.c:248:18: warning: unused variable ‘_save’ [-Wunused-variable] 248 | int _i; double _save;{ | ^~~~~ sinsyn.c:248:7: warning: unused variable ‘_i’ [-Wunused-variable] 248 | int _i; double _save;{ | ^~ sinsyn.c: In function ‘_nrn_jacob__SinSyn’: sinsyn.c:337:35: warning: variable ‘_thread’ set but not used [-Wunused-but-set-variable] 337 | double* _p; Datum* _ppvar; Datum* _thread; | ^~~~~~~ sinsyn.c:337:20: warning: unused variable ‘_ppvar’ [-Wunused-variable] 337 | double* _p; Datum* _ppvar; Datum* _thread; | ^~~~~~ sinsyn.c: In function ‘_initlists’: sinsyn.c:368:6: warning: unused variable ‘_i’ [-Wunused-variable] 368 | int _i; static int _first = 1; | ^~ sinsyn.c:367:21: warning: unused variable ‘_p’ [-Wunused-variable] 367 | double _x; double* _p = &_x; | ^~ sinsyn.c: At top level: sinsyn.c:364:13: warning: ‘terminal’ defined but not used [-Wunused-function] 364 | static void terminal(){} | ^~~~~~~~ sinsyn.c:238:13: warning: ‘_modl_cleanup’ defined but not used [-Wunused-function] 238 | static void _modl_cleanup(){ _match_recurse=1;} | ^~~~~~~~~~~~~ sinsyn.c:236:12: warning: ‘_ninits’ defined but not used [-Wunused-variable] 236 | static int _ninits = 0; | ^~~~~~~ sinsyn.c:235:12: warning: ‘error’ defined but not used [-Wunused-variable] 235 | static int error; | ^~~~~ sinsyn.c:233:14: warning: ‘modelname’ defined but not used [-Wunused-variable] 233 | static char *modelname = ""; | ^~~~~~~~~ sinsyn.c:232:12: warning: ‘_reset’ defined but not used [-Wunused-variable] 232 | static int _reset; | ^~~~~~ sinsyn.c:148:16: warning: ‘_sav_indep’ defined but not used [-Wunused-variable] 148 | static double _sav_indep; | ^~~~~~~~~~ sinsyn.c:110:14: warning: ‘_hoc_setdata’ defined but not used [-Wunused-function] 110 | static void _hoc_setdata(void* _vptr) { Prop* _prop; | ^~~~~~~~~~~~ sinsyn.c:71:16: warning: ‘_extcall_thread’ defined but not used [-Wunused-variable] 71 | static Datum* _extcall_thread; | ^~~~~~~~~~~~~~~ expsyni.c: In function ‘nrn_alloc’: expsyni.c:188:23: warning: ‘_ppvar’ may be used uninitialized [-Wmaybe-uninitialized] 188 | _prop->dparam = _ppvar; | ~~~~~~~~~~~~~~^~~~~~~~ expsyni.c:173:28: note: ‘_ppvar’ was declared here 173 | double *_p; Datum *_ppvar; | ^~~~~~ sinsyn.c: In function ‘nrn_alloc’: sinsyn.c:197:23: warning: ‘_ppvar’ may be used uninitialized [-Wmaybe-uninitialized] 197 | _prop->dparam = _ppvar; | ~~~~~~~~~~~~~~^~~~~~~~ sinsyn.c:177:28: note: ‘_ppvar’ was declared here 177 | double *_p; Datum *_ppvar; | ^~~~~~ => LINKING shared library ./libnrnmech.so g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -shared -fPIC -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -I /usr/include -o ./libnrnmech.so -Wl,-soname,libnrnmech.so \ ./mod_func.o ./expsyni.o ./sinsyn.o -L/usr/lib -lnrniv -lreadline -lcurses -lform -lpython3.11 -lX11 -lXext rm -f ./.libs/libnrnmech.so ; mkdir -p ./.libs ; cp ./libnrnmech.so ./.libs/libnrnmech.so Successfully created x86_64/special /usr/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running dist_info creating /builddir/build/BUILD/LFPy-2.2.6/.pyproject-builddir/pip-modern-metadata-iwabioju/LFPy.egg-info writing /builddir/build/BUILD/LFPy-2.2.6/.pyproject-builddir/pip-modern-metadata-iwabioju/LFPy.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/LFPy-2.2.6/.pyproject-builddir/pip-modern-metadata-iwabioju/LFPy.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/LFPy-2.2.6/.pyproject-builddir/pip-modern-metadata-iwabioju/LFPy.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/LFPy-2.2.6/.pyproject-builddir/pip-modern-metadata-iwabioju/LFPy.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/LFPy-2.2.6/.pyproject-builddir/pip-modern-metadata-iwabioju/LFPy.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/LFPy-2.2.6/.pyproject-builddir/pip-modern-metadata-iwabioju/LFPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'LFPy/test/arm64' warning: no files found matching '*' under directory 'LFPy/test/aarch64' warning: no files found matching 'LFPy/test/nrnmech.dll' adding license file 'LICENSE' writing manifest file '/builddir/build/BUILD/LFPy-2.2.6/.pyproject-builddir/pip-modern-metadata-iwabioju/LFPy.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/LFPy-2.2.6/.pyproject-builddir/pip-modern-metadata-iwabioju/LFPy-2.2.6.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: LFPy Building wheel for LFPy (pyproject.toml): started Running command Building wheel for LFPy (pyproject.toml) /builddir/build/BUILD/LFPy-2.2.6/LFPy/test Mod files: "./expsyni.mod" "./sinsyn.mod" Creating x86_64 directory for .o files. COBJS='' -> Compiling mod_func.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I. -I/usr/include -fPIC -c mod_func.c -o mod_func.o -> NMODL ../expsyni.mod (cd ".."; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl expsyni.mod -o "/builddir/build/BUILD/LFPy-2.2.6/LFPy/test/x86_64") -> NMODL ../sinsyn.mod (cd ".."; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl sinsyn.mod -o "/builddir/build/BUILD/LFPy-2.2.6/LFPy/test/x86_64") Translating expsyni.mod into /builddir/build/BUILD/LFPy-2.2.6/LFPy/test/x86_64/expsyni.c Thread Safe -> Compiling expsyni.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I".." -I. -I/usr/include -fPIC -c expsyni.c -o expsyni.o Translating sinsyn.mod into /builddir/build/BUILD/LFPy-2.2.6/LFPy/test/x86_64/sinsyn.c Thread Safe -> Compiling sinsyn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I".." -I. -I/usr/include -fPIC -c sinsyn.c -o sinsyn.o sinsyn.c:115:34: warning: missing braces around initializer [-Wmissing-braces] 115 | static VoidFunc hoc_intfunc[] = { | ^ 116 | 0,0 | { 117 | }; | } sinsyn.c:118:38: warning: missing braces around initializer [-Wmissing-braces] 118 | static Member_func _member_func[] = { | ^ 119 | "loc", _hoc_loc_pnt, | { } 120 | "has_loc", _hoc_has_loc, | { } 121 | "get_loc", _hoc_get_loc_pnt, | { } 122 | 0, 0 | { 123 | }; | } sinsyn.c:128:44: warning: missing braces around initializer [-Wmissing-braces] 128 | static HocParmLimits _hoc_parm_limits[] = { | ^ 129 | 0,0,0 | { { 130 | }; | }} sinsyn.c:131:42: warning: missing braces around initializer [-Wmissing-braces] 131 | static HocParmUnits _hoc_parm_units[] = { | ^ 132 | "del", "ms", | { } 133 | "dur", "ms", | { } 134 | "pkamp", "nA", | { } 135 | "freq", "Hz", | { } 136 | "bias", "nA", | { } 137 | "i", "nA", | { } 138 | 0,0 | { 139 | }; | } sinsyn.c:141:33: warning: missing braces around initializer [-Wmissing-braces] 141 | static DoubScal hoc_scdoub[] = { | ^ 142 | "PI_SinSyn", &PI_SinSyn, | { } 143 | 0,0 | { 144 | }; | } sinsyn.c:145:31: warning: missing braces around initializer [-Wmissing-braces] 145 | static DoubVec hoc_vdoub[] = { | ^ 146 | 0,0,0 | { 147 | }; | } sinsyn.c: In function ‘nrn_alloc’: sinsyn.c:176:15: warning: unused variable ‘prop_ion’ [-Wunused-variable] 176 | Prop *prop_ion; | ^~~~~~~~ sinsyn.c: In function ‘_sinsyn_reg’: sinsyn.c:210:13: warning: unused variable ‘_vectorized’ [-Wunused-variable] 210 | int _vectorized = 1; | ^~~~~~~~~~~ sinsyn.c: In function ‘_net_receive__SinSyn’: sinsyn.c:241:38: warning: variable ‘_thread’ set but not used [-Wunused-but-set-variable] 241 | { double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt; | ^~~~~~~ sinsyn.c:241:23: warning: variable ‘_ppvar’ set but not used [-Wunused-but-set-variable] 241 | { double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt; | ^~~~~~ sinsyn.c: In function ‘initmodel’: sinsyn.c:248:18: warning: unused variable ‘_save’ [-Wunused-variable] 248 | int _i; double _save;{ | ^~~~~ sinsyn.c:248:7: warning: unused variable ‘_i’ [-Wunused-variable] 248 | int _i; double _save;{ | ^~ sinsyn.c: In function ‘_nrn_jacob__SinSyn’: sinsyn.c:337:35: warning: variable ‘_thread’ set but not used [-Wunused-but-set-variable] 337 | double* _p; Datum* _ppvar; Datum* _thread; | ^~~~~~~ sinsyn.c:337:20: warning: unused variable ‘_ppvar’ [-Wunused-variable] 337 | double* _p; Datum* _ppvar; Datum* _thread; | ^~~~~~ sinsyn.c: In function ‘_initlists’: sinsyn.c:368:6: warning: unused variable ‘_i’ [-Wunused-variable] 368 | int _i; static int _first = 1; | ^~ sinsyn.c:367:21: warning: unused variable ‘_p’ [-Wunused-variable] 367 | double _x; double* _p = &_x; | ^~ sinsyn.c: At top level: sinsyn.c:364:13: warning: ‘terminal’ defined but not used [-Wunused-function] 364 | static void terminal(){} | ^~~~~~~~ sinsyn.c:238:13: warning: ‘_modl_cleanup’ defined but not used [-Wunused-function] 238 | static void _modl_cleanup(){ _match_recurse=1;} | ^~~~~~~~~~~~~ sinsyn.c:236:12: warning: ‘_ninits’ defined but not used [-Wunused-variable] 236 | static int _ninits = 0; | ^~~~~~~ sinsyn.c:235:12: warning: ‘error’ defined but not used [-Wunused-variable] 235 | static int error; | ^~~~~ sinsyn.c:233:14: warning: ‘modelname’ defined but not used [-Wunused-variable] 233 | static char *modelname = ""; | ^~~~~~~~~ sinsyn.c:232:12: warning: ‘_reset’ defined but not used [-Wunused-variable] 232 | static int _reset; | ^~~~~~ sinsyn.c:148:16: warning: ‘_sav_indep’ defined but not used [-Wunused-variable] 148 | static double _sav_indep; | ^~~~~~~~~~ sinsyn.c:110:14: warning: ‘_hoc_setdata’ defined but not used [-Wunused-function] 110 | static void _hoc_setdata(void* _vptr) { Prop* _prop; | ^~~~~~~~~~~~ sinsyn.c:71:16: warning: ‘_extcall_thread’ defined but not used [-Wunused-variable] 71 | static Datum* _extcall_thread; | ^~~~~~~~~~~~~~~ expsyni.c:115:34: warning: missing braces around initializer [-Wmissing-braces] 115 | static VoidFunc hoc_intfunc[] = { | ^ 116 | 0,0 | { 117 | }; | } expsyni.c:118:38: warning: missing braces around initializer [-Wmissing-braces] 118 | static Member_func _member_func[] = { | ^ 119 | "loc", _hoc_loc_pnt, | { } 120 | "has_loc", _hoc_has_loc, | { } 121 | "get_loc", _hoc_get_loc_pnt, | { } 122 | "exp_current", _hoc_exp_current, | { } 123 | "update_queue", _hoc_update_queue, | { } 124 | 0, 0 | { 125 | }; | } expsyni.c:132:44: warning: missing braces around initializer [-Wmissing-braces] 132 | static HocParmLimits _hoc_parm_limits[] = { | ^ 133 | "tau", 1e-09, 1e+09, | { { }} 134 | 0,0,0 | { { 135 | }; | }} expsyni.c:136:42: warning: missing braces around initializer [-Wmissing-braces] 136 | static HocParmUnits _hoc_parm_units[] = { | ^ 137 | "tau", "ms", | { } 138 | "i", "nA", | { } 139 | 0,0 | { 140 | }; | } expsyni.c:142:33: warning: missing braces around initializer [-Wmissing-braces] 142 | static DoubScal hoc_scdoub[] = { | ^ 143 | 0,0 | { 144 | }; | } expsyni.c:145:31: warning: missing braces around initializer [-Wmissing-braces] 145 | static DoubVec hoc_vdoub[] = { | ^ 146 | 0,0,0 | { 147 | }; | } expsyni.c: In function ‘nrn_alloc’: expsyni.c:172:15: warning: unused variable ‘prop_ion’ [-Wunused-variable] 172 | Prop *prop_ion; | ^~~~~~~~ expsyni.c: In function ‘_expsyni_reg’: expsyni.c:201:13: warning: unused variable ‘_vectorized’ [-Wunused-variable] 201 | int _vectorized = 1; | ^~~~~~~~~~~ expsyni.c: In function ‘update_queue_ExpSynI’: expsyni.c:233:9: warning: unused variable ‘_lk’ [-Wunused-variable] 233 | double _lk ; | ^~~ expsyni.c: In function ‘_net_receive__ExpSynI’: expsyni.c:278:38: warning: variable ‘_thread’ set but not used [-Wunused-but-set-variable] 278 | { double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt; | ^~~~~~~ expsyni.c:278:23: warning: variable ‘_ppvar’ set but not used [-Wunused-but-set-variable] 278 | { double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt; | ^~~~~~ expsyni.c: In function ‘initmodel’: expsyni.c:293:18: warning: unused variable ‘_save’ [-Wunused-variable] 293 | int _i; double _save;{ | ^~~~~ expsyni.c:293:7: warning: unused variable ‘_i’ [-Wunused-variable] 293 | int _i; double _save;{ | ^~ expsyni.c: In function ‘_nrn_current__ExpSynI’: expsyni.c:328:11: warning: unused variable ‘_lk’ [-Wunused-variable] 328 | double _lk , _lexpired_spikes , _lx ; | ^~~ expsyni.c: In function ‘_nrn_jacob__ExpSynI’: expsyni.c:386:35: warning: variable ‘_thread’ set but not used [-Wunused-but-set-variable] 386 | double* _p; Datum* _ppvar; Datum* _thread; | ^~~~~~~ expsyni.c:386:20: warning: unused variable ‘_ppvar’ [-Wunused-variable] 386 | double* _p; Datum* _ppvar; Datum* _thread; | ^~~~~~ expsyni.c: In function ‘_initlists’: expsyni.c:417:6: warning: unused variable ‘_i’ [-Wunused-variable] 417 | int _i; static int _first = 1; | ^~ expsyni.c:416:21: warning: unused variable ‘_p’ [-Wunused-variable] 416 | double _x; double* _p = &_x; | ^~ expsyni.c: At top level: expsyni.c:413:13: warning: ‘terminal’ defined but not used [-Wunused-function] 413 | static void terminal(){} | ^~~~~~~~ expsyni.c:229:13: warning: ‘_modl_cleanup’ defined but not used [-Wunused-function] 229 | static void _modl_cleanup(){ _match_recurse=1;} | ^~~~~~~~~~~~~ expsyni.c:227:12: warning: ‘_ninits’ defined but not used [-Wunused-variable] 227 | static int _ninits = 0; | ^~~~~~~ expsyni.c:226:12: warning: ‘error’ defined but not used [-Wunused-variable] 226 | static int error; | ^~~~~ expsyni.c:224:14: warning: ‘modelname’ defined but not used [-Wunused-variable] 224 | static char *modelname = "Exponential-function synaptic current, with NET_RECEIVE"; | ^~~~~~~~~ expsyni.c:223:12: warning: ‘_reset’ defined but not used [-Wunused-variable] 223 | static int _reset; | ^~~~~~ expsyni.c:148:16: warning: ‘_sav_indep’ defined but not used [-Wunused-variable] 148 | static double _sav_indep; | ^~~~~~~~~~ expsyni.c:110:14: warning: ‘_hoc_setdata’ defined but not used [-Wunused-function] 110 | static void _hoc_setdata(void* _vptr) { Prop* _prop; | ^~~~~~~~~~~~ expsyni.c: In function ‘update_queue_ExpSynI’: expsyni.c:240:8: warning: ‘_lupdate_queue’ is used uninitialized [-Wuninitialized] 240 | return _lupdate_queue; | ^~~~~~~~~~~~~~ expsyni.c:232:11: note: ‘_lupdate_queue’ was declared here 232 | double _lupdate_queue; | ^~~~~~~~~~~~~~ sinsyn.c: In function ‘nrn_alloc’: sinsyn.c:197:23: warning: ‘_ppvar’ may be used uninitialized [-Wmaybe-uninitialized] 197 | _prop->dparam = _ppvar; | ~~~~~~~~~~~~~~^~~~~~~~ sinsyn.c:177:28: note: ‘_ppvar’ was declared here 177 | double *_p; Datum *_ppvar; | ^~~~~~ expsyni.c: In function ‘nrn_alloc’: expsyni.c:188:23: warning: ‘_ppvar’ may be used uninitialized [-Wmaybe-uninitialized] 188 | _prop->dparam = _ppvar; | ~~~~~~~~~~~~~~^~~~~~~~ expsyni.c:173:28: note: ‘_ppvar’ was declared here 173 | double *_p; Datum *_ppvar; | ^~~~~~ => LINKING shared library ./libnrnmech.so g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -shared -fPIC -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -I /usr/include -o ./libnrnmech.so -Wl,-soname,libnrnmech.so \ ./mod_func.o ./expsyni.o ./sinsyn.o -L/usr/lib -lnrniv -lreadline -lcurses -lform -lpython3.11 -lX11 -lXext rm -f ./.libs/libnrnmech.so ; mkdir -p ./.libs ; cp ./libnrnmech.so ./.libs/libnrnmech.so Successfully created x86_64/special /usr/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-311 creating build/lib.linux-x86_64-cpython-311/LFPy copying LFPy/__init__.py -> build/lib.linux-x86_64-cpython-311/LFPy copying LFPy/alias_method.py -> build/lib.linux-x86_64-cpython-311/LFPy copying LFPy/cell.py -> build/lib.linux-x86_64-cpython-311/LFPy copying LFPy/eegmegcalc.py -> build/lib.linux-x86_64-cpython-311/LFPy copying LFPy/inputgenerators.py -> build/lib.linux-x86_64-cpython-311/LFPy copying LFPy/network.py -> build/lib.linux-x86_64-cpython-311/LFPy copying LFPy/pointprocess.py -> build/lib.linux-x86_64-cpython-311/LFPy copying LFPy/run_simulation.py -> build/lib.linux-x86_64-cpython-311/LFPy copying LFPy/templatecell.py -> build/lib.linux-x86_64-cpython-311/LFPy copying LFPy/tools.py -> build/lib.linux-x86_64-cpython-311/LFPy copying LFPy/version.py -> build/lib.linux-x86_64-cpython-311/LFPy running egg_info writing LFPy.egg-info/PKG-INFO writing dependency_links to LFPy.egg-info/dependency_links.txt writing requirements to LFPy.egg-info/requires.txt writing top-level names to LFPy.egg-info/top_level.txt reading manifest file 'LFPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'LFPy/test/arm64' warning: no files found matching '*' under directory 'LFPy/test/aarch64' warning: no files found matching 'LFPy/test/nrnmech.dll' adding license file 'LICENSE' writing manifest file 'LFPy.egg-info/SOURCES.txt' /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'LFPy.test' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'LFPy.test' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'LFPy.test' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'LFPy.test' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'LFPy.test.x86_64' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'LFPy.test.x86_64' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'LFPy.test.x86_64' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'LFPy.test.x86_64' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) copying LFPy/alias_method.pyx -> build/lib.linux-x86_64-cpython-311/LFPy copying LFPy/run_simulation.pyx -> build/lib.linux-x86_64-cpython-311/LFPy creating build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/L23E_p23.hoc -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/__init__.py -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/ball_and_stick_template.hoc -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/ball_and_sticks.hoc -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/ball_and_sticks_w_lists.hoc -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/common.py -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/expsyni.mod -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/fem_mix_dip.npz -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/sinsyn.mod -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/stick.hoc -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/stick_template.hoc -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/sticks_not_connected_head_to_toe.hoc -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/test_alias_method.py -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/test_cell.py -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/test_eegmegcalc.py -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/test_imem.py -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/test_inputgenerators.py -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/test_lfpcalc.py -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/test_misc.py -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/test_morphology_import.py -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/test_network.py -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/test_networkcell.py -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/test_pointprocess.py -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/test_recextelectrode.py -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/test_templatecell.py -> build/lib.linux-x86_64-cpython-311/LFPy/test copying LFPy/test/test_tools.py -> build/lib.linux-x86_64-cpython-311/LFPy/test creating build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64 copying LFPy/test/x86_64/expsyni.c -> build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64 copying LFPy/test/x86_64/expsyni.o -> build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64 copying LFPy/test/x86_64/libnrnmech.so -> build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64 copying LFPy/test/x86_64/makemod2c_inc -> build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64 copying LFPy/test/x86_64/mod_func.c -> build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64 copying LFPy/test/x86_64/mod_func.o -> build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64 copying LFPy/test/x86_64/sinsyn.c -> build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64 copying LFPy/test/x86_64/sinsyn.o -> build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64 copying LFPy/test/x86_64/special -> build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64 creating build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64/.libs copying LFPy/test/x86_64/.libs/libnrnmech.so -> build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64/.libs running build_ext cythoning LFPy/run_simulation.pyx to LFPy/run_simulation.c cythoning LFPy/alias_method.pyx to LFPy/alias_method.c building 'LFPy.run_simulation' extension creating build/temp.linux-x86_64-cpython-311 creating build/temp.linux-x86_64-cpython-311/LFPy gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -c LFPy/run_simulation.c -o build/temp.linux-x86_64-cpython-311/LFPy/run_simulation.o In file included from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948, from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5, from LFPy/run_simulation.c:746: /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-311/LFPy/run_simulation.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-311/LFPy/run_simulation.cpython-311-x86_64-linux-gnu.so building 'LFPy.alias_method' extension gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -c LFPy/alias_method.c -o build/temp.linux-x86_64-cpython-311/LFPy/alias_method.o In file included from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948, from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5, from LFPy/alias_method.c:746: /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-311/LFPy/alias_method.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-311/LFPy/alias_method.cpython-311-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-311/LFPy/alias_method.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-311/LFPy/run_simulation.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/LFPy creating build/bdist.linux-x86_64/wheel/LFPy/test creating build/bdist.linux-x86_64/wheel/LFPy/test/x86_64 creating build/bdist.linux-x86_64/wheel/LFPy/test/x86_64/.libs copying build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64/.libs/libnrnmech.so -> build/bdist.linux-x86_64/wheel/LFPy/test/x86_64/.libs copying build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64/special -> build/bdist.linux-x86_64/wheel/LFPy/test/x86_64 copying build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64/sinsyn.o -> build/bdist.linux-x86_64/wheel/LFPy/test/x86_64 copying build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64/sinsyn.c -> build/bdist.linux-x86_64/wheel/LFPy/test/x86_64 copying build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64/mod_func.o -> build/bdist.linux-x86_64/wheel/LFPy/test/x86_64 copying build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64/mod_func.c -> build/bdist.linux-x86_64/wheel/LFPy/test/x86_64 copying build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64/makemod2c_inc -> build/bdist.linux-x86_64/wheel/LFPy/test/x86_64 copying build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64/libnrnmech.so -> build/bdist.linux-x86_64/wheel/LFPy/test/x86_64 copying build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64/expsyni.o -> build/bdist.linux-x86_64/wheel/LFPy/test/x86_64 copying build/lib.linux-x86_64-cpython-311/LFPy/test/x86_64/expsyni.c -> build/bdist.linux-x86_64/wheel/LFPy/test/x86_64 copying build/lib.linux-x86_64-cpython-311/LFPy/test/test_tools.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/test_templatecell.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/test_recextelectrode.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/test_pointprocess.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/test_networkcell.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/test_network.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/test_morphology_import.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/test_misc.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/test_lfpcalc.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/test_inputgenerators.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/test_imem.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/test_eegmegcalc.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/test_cell.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/test_alias_method.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/sticks_not_connected_head_to_toe.hoc -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/stick_template.hoc -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/stick.hoc -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/sinsyn.mod -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/fem_mix_dip.npz -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/expsyni.mod -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/common.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/ball_and_sticks_w_lists.hoc -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/ball_and_sticks.hoc -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/ball_and_stick_template.hoc -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/__init__.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/test/L23E_p23.hoc -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-311/LFPy/run_simulation.pyx -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-311/LFPy/alias_method.pyx -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-311/LFPy/version.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-311/LFPy/tools.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-311/LFPy/templatecell.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-311/LFPy/run_simulation.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-311/LFPy/pointprocess.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-311/LFPy/network.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-311/LFPy/inputgenerators.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-311/LFPy/eegmegcalc.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-311/LFPy/cell.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-311/LFPy/alias_method.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-311/LFPy/__init__.py -> build/bdist.linux-x86_64/wheel/LFPy running install_egg_info Copying LFPy.egg-info to build/bdist.linux-x86_64/wheel/LFPy-2.2.6-py3.11.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/LFPy-2.2.6.dist-info/WHEEL creating '/builddir/build/BUILD/LFPy-2.2.6/.pyproject-builddir/pip-wheel-tmaron3h/tmpuwmfol0b/LFPy-2.2.6-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'LFPy/__init__.py' adding 'LFPy/alias_method.cpython-311-x86_64-linux-gnu.so' adding 'LFPy/alias_method.py' adding 'LFPy/alias_method.pyx' adding 'LFPy/cell.py' adding 'LFPy/eegmegcalc.py' adding 'LFPy/inputgenerators.py' adding 'LFPy/network.py' adding 'LFPy/pointprocess.py' adding 'LFPy/run_simulation.cpython-311-x86_64-linux-gnu.so' adding 'LFPy/run_simulation.py' adding 'LFPy/run_simulation.pyx' adding 'LFPy/templatecell.py' adding 'LFPy/tools.py' adding 'LFPy/version.py' adding 'LFPy/test/L23E_p23.hoc' adding 'LFPy/test/__init__.py' adding 'LFPy/test/ball_and_stick_template.hoc' adding 'LFPy/test/ball_and_sticks.hoc' adding 'LFPy/test/ball_and_sticks_w_lists.hoc' adding 'LFPy/test/common.py' adding 'LFPy/test/expsyni.mod' adding 'LFPy/test/fem_mix_dip.npz' adding 'LFPy/test/sinsyn.mod' adding 'LFPy/test/stick.hoc' adding 'LFPy/test/stick_template.hoc' adding 'LFPy/test/sticks_not_connected_head_to_toe.hoc' adding 'LFPy/test/test_alias_method.py' adding 'LFPy/test/test_cell.py' adding 'LFPy/test/test_eegmegcalc.py' adding 'LFPy/test/test_imem.py' adding 'LFPy/test/test_inputgenerators.py' adding 'LFPy/test/test_lfpcalc.py' adding 'LFPy/test/test_misc.py' adding 'LFPy/test/test_morphology_import.py' adding 'LFPy/test/test_network.py' adding 'LFPy/test/test_networkcell.py' adding 'LFPy/test/test_pointprocess.py' adding 'LFPy/test/test_recextelectrode.py' adding 'LFPy/test/test_templatecell.py' adding 'LFPy/test/test_tools.py' adding 'LFPy/test/x86_64/expsyni.c' adding 'LFPy/test/x86_64/expsyni.o' adding 'LFPy/test/x86_64/libnrnmech.so' adding 'LFPy/test/x86_64/makemod2c_inc' adding 'LFPy/test/x86_64/mod_func.c' adding 'LFPy/test/x86_64/mod_func.o' adding 'LFPy/test/x86_64/sinsyn.c' adding 'LFPy/test/x86_64/sinsyn.o' adding 'LFPy/test/x86_64/special' adding 'LFPy/test/x86_64/.libs/libnrnmech.so' adding 'LFPy-2.2.6.dist-info/LICENSE' adding 'LFPy-2.2.6.dist-info/METADATA' adding 'LFPy-2.2.6.dist-info/WHEEL' adding 'LFPy-2.2.6.dist-info/top_level.txt' adding 'LFPy-2.2.6.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for LFPy (pyproject.toml): finished with status 'done' Created wheel for LFPy: filename=LFPy-2.2.6-cp311-cp311-linux_x86_64.whl size=670235 sha256=a12f4654b100b6131bc006e2ca01d4ec236ac6bf42730adf5404c082003894e3 Stored in directory: /builddir/.cache/pip/wheels/d6/6d/07/4a6dc9b5bfbdfbf8a3d84503faae2598ad66f145604a9d0fec Successfully built LFPy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.oW1YYV + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64 ++ dirname /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd LFPy-2.2.6 ++ ls /builddir/build/BUILD/LFPy-2.2.6/pyproject-wheeldir/LFPy-2.2.6-cp311-cp311-linux_x86_64.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=LFPy==2.2.6 + TMPDIR=/builddir/build/BUILD/LFPy-2.2.6/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/LFPy-2.2.6/pyproject-wheeldir LFPy==2.2.6 Using pip 22.3.1 from /usr/lib/python3.11/site-packages/pip (python 3.11) Looking in links: /builddir/build/BUILD/LFPy-2.2.6/pyproject-wheeldir Processing ./pyproject-wheeldir/LFPy-2.2.6-cp311-cp311-linux_x86_64.whl Installing collected packages: LFPy Successfully installed LFPy-2.2.6 + '[' -d /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/bin ']' + rm -f /builddir/build/BUILD/python-lfpy-2.2.6-5.fc38.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib/python3.11/site-packages ']' + '[' /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages '!=' /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib/python3.11/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages ']' + site_dirs+=("/usr/lib64/python3.11/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.11/site-packages/LFPy-2.2.6.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages/LFPy-2.2.6.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64 --record /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages/LFPy-2.2.6.dist-info/RECORD --output /builddir/build/BUILD/python-lfpy-2.2.6-5.fc38.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages/LFPy-2.2.6.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages/LFPy-2.2.6.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages/LFPy-2.2.6.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages/LFPy-2.2.6.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-lfpy-2.2.6-5.fc38.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-lfpy-2.2.6-5.fc38.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-lfpy-2.2.6-5.fc38.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64 --sitelib /usr/lib/python3.11/site-packages --sitearch /usr/lib64/python3.11/site-packages --python-version 3.11 --pyproject-record /builddir/build/BUILD/python-lfpy-2.2.6-5.fc38.x86_64-pyproject-record --prefix /usr LFPy + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.2.6-5.fc38 --unique-debug-suffix -2.2.6-5.fc38.x86_64 --unique-debug-src-base python-lfpy-2.2.6-5.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/LFPy-2.2.6 extracting debug info from /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages/LFPy/alias_method.cpython-311-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages/LFPy/run_simulation.cpython-311-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages/LFPy/test/x86_64/.libs/libnrnmech.so extracting debug info from /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages/LFPy/test/x86_64/libnrnmech.so original debug info size: 828kB, size after compression: 772kB /usr/bin/sepdebugcrcfix: Updated 4 CRC32s, 0 CRC32s did match. 1711 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/lib64/python3.11/site-packages/LFPy/test/x86_64/special from /bin/sh to #!/usr/bin/sh + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib/debug/usr/lib64/python3.11 using python3.11 Bytecompiling .py files below /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.xRcXgN + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd LFPy-2.2.6 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/1269/exe ']' +++ /usr/bin/readlink /proc/1269/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + module load mpi/mpich-x86_64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + PATH=/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/bin:/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib/python3.11/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/LFPy-2.2.6/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest LFPy/test/ ============================= test session starts ============================== platform linux -- Python 3.11.1, pytest-7.2.0, pluggy-1.0.0 rootdir: /builddir/build/BUILD/LFPy-2.2.6 collected 304 items LFPy/test/test_alias_method.py ..... [ 1%] LFPy/test/test_cell.py ................................................. [ 17%] ................................. [ 28%] LFPy/test/test_eegmegcalc.py .................................... [ 40%] LFPy/test/test_imem.py ..... [ 42%] LFPy/test/test_inputgenerators.py . [ 42%] LFPy/test/test_lfpcalc.py ...................... [ 49%] LFPy/test/test_misc.py .. [ 50%] LFPy/test/test_morphology_import.py . [ 50%] LFPy/test/test_network.py ........ [ 53%] LFPy/test/test_networkcell.py .......................................... [ 67%] ............... [ 72%] LFPy/test/test_pointprocess.py ........... [ 75%] LFPy/test/test_recextelectrode.py ............... [ 80%] LFPy/test/test_templatecell.py ......................................... [ 94%] ................ [ 99%] LFPy/test/test_tools.py .. [100%] =============================== warnings summary =============================== LFPy/network.py:1006 /builddir/build/BUILD/LFPy-2.2.6/LFPy/network.py:1006: DeprecationWarning: invalid escape sequence '\s' """ LFPy/test/test_cell.py::testCell::test_cell_get_axial_currents_from_vmem_12 LFPy/test/test_cell.py::testCell::test_get_multi_current_dipole_moments_04 LFPy/test/test_eegmegcalc.py::testInfiniteVolumeConductor::test_get_multi_dipole_potential01 /builddir/build/BUILD/LFPy-2.2.6/LFPy/cell.py:182: UserWarning: 0 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_cell.py::testCell::test_cell_get_axial_currents_from_vmem_13 LFPy/test/test_eegmegcalc.py::testInfiniteVolumeConductor::test_get_multi_dipole_potential02 /builddir/build/BUILD/LFPy-2.2.6/LFPy/cell.py:182: UserWarning: 4 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_network.py: 25 warnings /usr/lib64/python3.11/site-packages/neuron/__init__.py:735: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here. Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations return numpy.ndarray((size,), numpy.float, cbuffer, order='C') -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 304 passed, 31 warnings in 64.60s (0:01:04) ================== + '[' '!' -f /builddir/build/BUILD/python-lfpy-2.2.6-5.fc38.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/bin:/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib/python3.11/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib/python3.11/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-lfpy-2.2.6-5.fc38.x86_64-pyproject-modules -e '*x86_64*' -e '*test*' Check import: LFPy Warning: no DISPLAY environment variable. --No graphics will be displayed. Check import: LFPy.alias_method Check import: LFPy.cell Check import: LFPy.eegmegcalc Check import: LFPy.inputgenerators Check import: LFPy.network Check import: LFPy.pointprocess Check import: LFPy.run_simulation Check import: LFPy.templatecell Check import: LFPy.tools Check import: LFPy.version + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/1269/exe ']' +++ /usr/bin/readlink /proc/1269/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + module unload mpi/mpich-x86_64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/1269/exe ']' +++ /usr/bin/readlink /proc/1269/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + module load mpi/openmpi-x86_64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + export OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_rmaps_base_oversubscribe=1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + PATH=/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/bin:/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib/python3.11/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/LFPy-2.2.6/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest LFPy/test/ ============================= test session starts ============================== platform linux -- Python 3.11.1, pytest-7.2.0, pluggy-1.0.0 rootdir: /builddir/build/BUILD/LFPy-2.2.6 collected 304 items LFPy/test/test_alias_method.py ..... [ 1%] LFPy/test/test_cell.py ................................................. [ 17%] ................................. [ 28%] LFPy/test/test_eegmegcalc.py .................................... [ 40%] LFPy/test/test_imem.py ..... [ 42%] LFPy/test/test_inputgenerators.py . [ 42%] LFPy/test/test_lfpcalc.py ...................... [ 49%] LFPy/test/test_misc.py .. [ 50%] LFPy/test/test_morphology_import.py . [ 50%] LFPy/test/test_network.py ........ [ 53%] LFPy/test/test_networkcell.py .......................................... [ 67%] ............... [ 72%] LFPy/test/test_pointprocess.py ........... [ 75%] LFPy/test/test_recextelectrode.py ............... [ 80%] LFPy/test/test_templatecell.py ......................................... [ 94%] ................ [ 99%] LFPy/test/test_tools.py .. [100%] =============================== warnings summary =============================== LFPy/network.py:1006 /builddir/build/BUILD/LFPy-2.2.6/LFPy/network.py:1006: DeprecationWarning: invalid escape sequence '\s' """ LFPy/test/test_cell.py::testCell::test_cell_get_axial_currents_from_vmem_12 LFPy/test/test_cell.py::testCell::test_get_multi_current_dipole_moments_04 LFPy/test/test_eegmegcalc.py::testInfiniteVolumeConductor::test_get_multi_dipole_potential01 /builddir/build/BUILD/LFPy-2.2.6/LFPy/cell.py:182: UserWarning: 0 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_cell.py::testCell::test_cell_get_axial_currents_from_vmem_13 LFPy/test/test_eegmegcalc.py::testInfiniteVolumeConductor::test_get_multi_dipole_potential02 /builddir/build/BUILD/LFPy-2.2.6/LFPy/cell.py:182: UserWarning: 4 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_network.py: 25 warnings /usr/lib64/python3.11/site-packages/neuron/__init__.py:735: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here. Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations return numpy.ndarray((size,), numpy.float, cbuffer, order='C') -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 304 passed, 31 warnings in 64.92s (0:01:04) ================== + '[' '!' -f /builddir/build/BUILD/python-lfpy-2.2.6-5.fc38.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/bin:/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib/python3.11/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib/python3.11/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-lfpy-2.2.6-5.fc38.x86_64-pyproject-modules -e '*x86_64*' -e '*test*' Check import: LFPy Warning: no DISPLAY environment variable. --No graphics will be displayed. Check import: LFPy.alias_method Check import: LFPy.cell Check import: LFPy.eegmegcalc Check import: LFPy.inputgenerators Check import: LFPy.network Check import: LFPy.pointprocess Check import: LFPy.run_simulation Check import: LFPy.templatecell Check import: LFPy.tools Check import: LFPy.version + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/1269/exe ']' +++ /usr/bin/readlink /proc/1269/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + module unload mpi/openmpi-x86_64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-lfpy-2.2.6-5.fc38.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.H8vHM5 + umask 022 + cd /builddir/build/BUILD + cd LFPy-2.2.6 + DOCDIR=/builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/share/doc/python3-lfpy + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/share/doc/python3-lfpy + cp -pr README.md /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/share/doc/python3-lfpy + RPM_EC=0 ++ jobs -p + exit 0 warning: Duplicate build-ids /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages/LFPy/test/x86_64/.libs/libnrnmech.so and /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages/LFPy/test/x86_64/libnrnmech.so Provides: libnrnmech.so()(64bit) python-lfpy = 2.2.6-5.fc38 python3-lfpy = 2.2.6-5.fc38 python3-lfpy(x86-64) = 2.2.6-5.fc38 python3.11-lfpy = 2.2.6-5.fc38 python3.11dist(lfpy) = 2.2.6 python3dist(lfpy) = 2.2.6 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: (python3.11dist(lfpykit) < 0.5~~ with python3.11dist(lfpykit) >= 0.4) /usr/bin/sh libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libnrniv.so.0.0.0()(64bit) python(abi) = 3.11 python3.11dist(cython) >= 0.20 python3.11dist(h5py) >= 2.5 python3.11dist(neuron) >= 7.7.2 python3.11dist(numpy) >= 1.8 python3.11dist(scipy) >= 0.14 rtld(GNU_HASH) Processing files: python-lfpy-debugsource-2.2.6-5.fc38.x86_64 Provides: python-lfpy-debugsource = 2.2.6-5.fc38 python-lfpy-debugsource(x86-64) = 2.2.6-5.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-lfpy-debuginfo-2.2.6-5.fc38.x86_64 warning: Duplicate build-ids /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib/debug/usr/lib64/python3.11/site-packages/LFPy/test/x86_64/.libs/libnrnmech.so-2.2.6-5.fc38.x86_64.debug and /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib/debug/usr/lib64/python3.11/site-packages/LFPy/test/x86_64/libnrnmech.so-2.2.6-5.fc38.x86_64.debug Provides: debuginfo(build-id) = 1fb01c827cb4984fb8aa36b06264f26339240008 debuginfo(build-id) = 73610f69c88b0d84ab6f1834e8c9b3ad88060688 debuginfo(build-id) = f31b1163b7b42af8184907f0f778b5270a6a7f21 debuginfo(build-id) = nilnil python-lfpy-debuginfo = 2.2.6-5.fc38 python3-lfpy-debuginfo = 2.2.6-5.fc38 python3-lfpy-debuginfo(x86-64) = 2.2.6-5.fc38 python3.11-lfpy-debuginfo = 2.2.6-5.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python-lfpy-debugsource(x86-64) = 2.2.6-5.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64 Wrote: /builddir/build/RPMS/python-lfpy-debugsource-2.2.6-5.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/python3-lfpy-debuginfo-2.2.6-5.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/python3-lfpy-2.2.6-5.fc38.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.2enLuJ + umask 022 + cd /builddir/build/BUILD + cd LFPy-2.2.6 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.iKKKj8 + umask 022 + cd /builddir/build/BUILD + rm -rf LFPy-2.2.6 LFPy-2.2.6.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: Duplicate build-ids /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages/LFPy/test/x86_64/.libs/libnrnmech.so and /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib64/python3.11/site-packages/LFPy/test/x86_64/libnrnmech.so Duplicate build-ids /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib/debug/usr/lib64/python3.11/site-packages/LFPy/test/x86_64/.libs/libnrnmech.so-2.2.6-5.fc38.x86_64.debug and /builddir/build/BUILDROOT/python-lfpy-2.2.6-5.fc38.x86_64/usr/lib/debug/usr/lib64/python3.11/site-packages/LFPy/test/x86_64/libnrnmech.so-2.2.6-5.fc38.x86_64.debug Child return code was: 0