Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c153' (ED25519) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5171082 --chroot fedora-rawhide-i386 --detached Version: 0.62 PID: 14613 Logging PID: 14614 Task: {'appstream': False, 'background': True, 'build_id': 5171082, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-i386', 'enable_net': False, 'fedora_review': False, 'git_hash': '2e8067a3d2106d0f694fdea14d7f475152026227', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/htslib', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'htslib', 'package_version': '1.15.1-1', 'project_dirname': 'gcc-13-test', 'project_name': 'gcc-13-test', 'project_owner': 'jakub', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jakub/gcc-13-test/fedora-rawhide-i386/', 'id': 'copr_base', 'name': 'Copr repository'}, {'baseurl': 'https://jakub.fedorapeople.org/fedora-gcc13-$arch/', 'id': 'https_jakub_fedorapeople_org_fedora_gcc13_arch', 'name': 'Additional repo https_jakub_fedorapeople_org_fedora_gcc13_arch'}], 'sandbox': 'jakub/gcc-13-test--jakub', 'source_json': {}, 'source_type': None, 'submitter': 'jakub', 'tags': [], 'task_id': '5171082-fedora-rawhide-i386', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/htslib /var/lib/copr-rpmbuild/workspace/workdir-ttzk8bqg/htslib --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/htslib', '/var/lib/copr-rpmbuild/workspace/workdir-ttzk8bqg/htslib', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-ttzk8bqg/htslib'... Running: git checkout 2e8067a3d2106d0f694fdea14d7f475152026227 cmd: ['git', 'checkout', '2e8067a3d2106d0f694fdea14d7f475152026227'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ttzk8bqg/htslib rc: 0 stdout: stderr: Note: switching to '2e8067a3d2106d0f694fdea14d7f475152026227'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 2e8067a automatic import of htslib Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ttzk8bqg/htslib rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading htslib-1.15.1.tar.bz2 /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated INFO: Calling: curl -H Pragma: -o htslib-1.15.1.tar.bz2 --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jakub/gcc-13-test/htslib/htslib-1.15.1.tar.bz2/md5/9ea5cff8edcebb01f31dd02bd4d2a082/htslib-1.15.1.tar.bz2 % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 4044k 100 4044k 0 0 29.4M 0 --:--:-- --:--:-- --:--:-- 29.6M INFO: Reading stdout from command: md5sum htslib-1.15.1.tar.bz2 Running (timeout=115200): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-ttzk8bqg/htslib/htslib.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ttzk8bqg/htslib --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1671965880.632776 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-ttzk8bqg/htslib/htslib.spec) Config(fedora-rawhide-i686) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1671965880.632776/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start(bootstrap): dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 51 MB/s | 16 MB 00:00 Additional repo https_jakub_fedorapeople_org_fe 343 kB/s | 86 kB 00:00 local 70 MB/s | 60 MB 00:00 Last metadata expiration check: 0:00:01 ago on Sun Dec 25 10:58:06 2022. Dependencies resolved. ========================================================================================================================= Package Arch Version Repository Size ========================================================================================================================= Installing: dnf noarch 4.14.0-1.fc38 local 469 k dnf-plugins-core noarch 4.3.1-1.fc38 local 34 k Installing dependencies: alternatives i686 1.21-1.fc38 copr_base 39 k audit-libs i686 3.0.9-2.fc38 local 122 k basesystem noarch 11-14.fc37 local 7.0 k bash i686 5.2.9-3.fc38 copr_base 1.8 M bzip2-libs i686 1.0.8-12.fc38 copr_base 42 k ca-certificates noarch 2022.2.54-5.fc37 local 829 k coreutils i686 9.1-8.fc38 copr_base 1.1 M coreutils-common i686 9.1-8.fc38 copr_base 2.0 M crypto-policies noarch 20221215-1.gita4c31a3.fc38 local 63 k curl i686 7.87.0-1.fc38 copr_base 347 k cyrus-sasl-lib i686 2.1.28-8.fc38 copr_base 858 k dbus-libs i686 1:1.14.4-1.fc38 copr_base 167 k dnf-data noarch 4.14.0-1.fc38 local 43 k elfutils-default-yama-scope noarch 0.188-3.fc38 copr_base 16 k elfutils-libelf i686 0.188-3.fc38 copr_base 204 k elfutils-libs i686 0.188-3.fc38 copr_base 287 k expat i686 2.5.0-1.fc38 copr_base 115 k fedora-gpg-keys noarch 38-0.3 local 115 k fedora-release noarch 38-0.6 local 11 k fedora-release-common noarch 38-0.6 local 21 k fedora-release-identity-basic noarch 38-0.6 local 11 k fedora-repos noarch 38-0.3 local 10 k fedora-repos-rawhide noarch 38-0.3 local 9.7 k file-libs i686 5.42-4.fc38 copr_base 684 k filesystem i686 3.18-2.fc37 local 1.1 M findutils i686 1:4.9.0-2.fc38 copr_base 494 k gawk i686 5.1.1-4.fc38 copr_base 1.0 M gdbm-libs i686 1:1.23-2.fc38 copr_base 60 k glib2 i686 2.74.1-2.fc38 copr_base 2.8 M glibc i686 2.36.9000-19.fc38 local 1.9 M glibc-common i686 2.36.9000-19.fc38 local 315 k glibc-minimal-langpack i686 2.36.9000-19.fc38 local 30 k gmp i686 1:6.2.1-3.fc38 copr_base 306 k gnupg2 i686 2.3.8-1.fc38 copr_base 2.6 M gnutls i686 3.7.8-9.fc38 copr_base 1.1 M gpgme i686 1.17.1-3.fc38 copr_base 219 k grep i686 3.8-1.fc38 copr_base 289 k ima-evm-utils i686 1.4-6.fc37 local 63 k json-c i686 0.16-3.fc38 local 44 k keyutils-libs i686 1.6.1-5.fc37 local 32 k krb5-libs i686 1.20.1-3.fc38 local 763 k libacl i686 2.3.1-4.fc38 copr_base 25 k libarchive i686 3.6.1-3.fc38 local 443 k libassuan i686 2.5.5-5.fc37 local 69 k libattr i686 2.5.1-5.fc38 copr_base 19 k libb2 i686 0.98.1-7.fc37 local 35 k libblkid i686 2.38.1-3.fc38 local 116 k libbrotli i686 1.0.9-9.fc38 copr_base 318 k libcap i686 2.48-5.fc37 local 68 k libcap-ng i686 0.8.3-4.fc38 local 33 k libcom_err i686 1.46.5-3.fc37 local 26 k libcomps i686 0.1.18-4.fc37 local 84 k libcurl i686 7.87.0-1.fc38 copr_base 327 k libdnf i686 0.68.0-1.fc38 local 722 k libevent i686 2.1.12-7.fc37 local 279 k libffi i686 3.4.4-1.fc38 local 36 k libfsverity i686 1.4-8.fc38 copr_base 21 k libgcc i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 101 k libgcrypt i686 1.10.1-6.fc38 local 484 k libgomp i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 304 k libgpg-error i686 1.46-1.fc38 local 225 k libidn2 i686 2.3.4-1.fc38 local 154 k libksba i686 1.6.3-1.fc38 local 161 k libmodulemd i686 2.14.0-4.fc37 local 241 k libmount i686 2.38.1-3.fc38 local 141 k libnghttp2 i686 1.51.0-1.fc38 local 80 k libnsl2 i686 2.0.0-4.fc37 local 31 k libpsl i686 0.21.1-6.fc37 local 64 k librepo i686 1.15.1-1.fc38 local 102 k libreport-filesystem noarch 2.17.6-1.fc38 local 14 k libselinux i686 3.4-6.fc38 local 91 k libsemanage i686 3.4-6.fc38 local 128 k libsepol i686 3.4-4.fc38 local 336 k libsigsegv i686 2.14-3.fc37 local 27 k libsmartcols i686 2.38.1-3.fc38 local 65 k libsolv i686 0.7.22-3.fc37 local 428 k libssh i686 0.10.4-2.fc38 local 222 k libssh-config noarch 0.10.4-2.fc38 local 8.8 k libstdc++ i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 857 k libtasn1 i686 4.19.0-1.fc38 local 76 k libtirpc i686 1.3.3-0.fc37 local 101 k libunistring i686 1.0-2.fc37 local 551 k libuuid i686 2.38.1-3.fc38 local 28 k libverto i686 0.3.2-4.fc37 local 21 k libxcrypt i686 4.4.33-5.fc38 local 123 k libxml2 i686 2.10.3-2.fc38 local 745 k libyaml i686 0.2.5-8.fc37 local 62 k libzstd i686 1.5.2-3.fc37 local 274 k lua-libs i686 5.4.4-6.fc38 local 148 k lz4-libs i686 1.9.3-5.fc37 local 72 k mpdecimal i686 2.5.1-4.fc37 local 106 k mpfr i686 4.1.1-2.fc38 local 637 k ncurses-base noarch 6.3-5.20221126.fc38 local 61 k ncurses-libs i686 6.3-5.20221126.fc38 local 348 k nettle i686 3.8-2.fc37 local 430 k npth i686 1.6-10.fc38 local 24 k openldap i686 2.6.3-1.fc38 local 273 k openssl-libs i686 1:3.0.5-6.fc38 local 2.1 M p11-kit i686 0.24.1-5.fc38 local 335 k p11-kit-trust i686 0.24.1-5.fc38 local 135 k pcre2 i686 10.40-1.fc37.1 local 234 k pcre2-syntax noarch 10.40-1.fc37.1 local 142 k popt i686 1.19-1.fc38 local 61 k publicsuffix-list-dafsa noarch 20221208-1.fc38 local 59 k python-pip-wheel noarch 22.3.1-1.fc38 local 1.4 M python-setuptools-wheel noarch 65.5.1-1.fc38 local 715 k python3 i686 3.11.1-1.fc38 local 27 k python3-dateutil noarch 1:2.8.2-4.fc37 local 350 k python3-dbus i686 1.3.2-1.fc38 copr_base 151 k python3-distro noarch 1.8.0-1.fc38 local 45 k python3-dnf noarch 4.14.0-1.fc38 local 567 k python3-dnf-plugins-core noarch 4.3.1-1.fc38 local 263 k python3-gpg i686 1.17.1-3.fc38 copr_base 277 k python3-hawkey i686 0.68.0-1.fc38 local 111 k python3-libcomps i686 0.1.18-4.fc37 local 51 k python3-libdnf i686 0.68.0-1.fc38 local 828 k python3-libs i686 3.11.1-1.fc38 local 9.3 M python3-rpm i686 4.18.0-8.fc38 local 95 k python3-six noarch 1.16.0-8.fc37 local 42 k readline i686 8.2-2.fc38 local 218 k rpm i686 4.18.0-8.fc38 local 543 k rpm-build-libs i686 4.18.0-8.fc38 local 102 k rpm-libs i686 4.18.0-8.fc38 local 341 k rpm-sequoia i686 1.2.0-1.fc38 local 924 k rpm-sign-libs i686 4.18.0-8.fc38 local 27 k sed i686 4.8-11.fc37 local 300 k setup noarch 2.14.3-1.fc38 local 146 k shadow-utils i686 2:4.13-3.fc38 local 1.2 M sqlite-libs i686 3.40.0-1.fc38 local 705 k systemd-libs i686 252.4-598.fc38 local 662 k tpm2-tss i686 4.0.0-0.1.rc2.fc38 local 603 k tzdata noarch 2022g-1.fc38 local 432 k xz-libs i686 5.2.9-1.fc38 local 101 k zchunk-libs i686 1.2.3-1.fc38 local 54 k zlib i686 1.2.13-1.fc38 local 92 k Transaction Summary ========================================================================================================================= Install 137 Packages Total download size: 57 M Installed size: 198 M Downloading Packages: (1/137): bzip2-libs-1.0.8-12.fc38.i686.rpm 457 kB/s | 42 kB 00:00 (2/137): alternatives-1.21-1.fc38.i686.rpm 387 kB/s | 39 kB 00:00 (3/137): bash-5.2.9-3.fc38.i686.rpm 13 MB/s | 1.8 MB 00:00 (4/137): coreutils-9.1-8.fc38.i686.rpm 24 MB/s | 1.1 MB 00:00 (5/137): coreutils-common-9.1-8.fc38.i686.rpm 34 MB/s | 2.0 MB 00:00 (6/137): curl-7.87.0-1.fc38.i686.rpm 14 MB/s | 347 kB 00:00 (7/137): cyrus-sasl-lib-2.1.28-8.fc38.i686.rpm 22 MB/s | 858 kB 00:00 (8/137): dbus-libs-1.14.4-1.fc38.i686.rpm 9.2 MB/s | 167 kB 00:00 (9/137): elfutils-default-yama-scope-0.188-3.fc 954 kB/s | 16 kB 00:00 (10/137): elfutils-libelf-0.188-3.fc38.i686.rpm 19 MB/s | 204 kB 00:00 (11/137): elfutils-libs-0.188-3.fc38.i686.rpm 21 MB/s | 287 kB 00:00 (12/137): expat-2.5.0-1.fc38.i686.rpm 8.0 MB/s | 115 kB 00:00 (13/137): file-libs-5.42-4.fc38.i686.rpm 44 MB/s | 684 kB 00:00 (14/137): findutils-4.9.0-2.fc38.i686.rpm 29 MB/s | 494 kB 00:00 (15/137): gawk-5.1.1-4.fc38.i686.rpm 22 MB/s | 1.0 MB 00:00 (16/137): gdbm-libs-1.23-2.fc38.i686.rpm 1.8 MB/s | 60 kB 00:00 (17/137): glib2-2.74.1-2.fc38.i686.rpm 72 MB/s | 2.8 MB 00:00 (18/137): gmp-6.2.1-3.fc38.i686.rpm 26 MB/s | 306 kB 00:00 (19/137): gnupg2-2.3.8-1.fc38.i686.rpm 52 MB/s | 2.6 MB 00:00 (20/137): gnutls-3.7.8-9.fc38.i686.rpm 25 MB/s | 1.1 MB 00:00 (21/137): gpgme-1.17.1-3.fc38.i686.rpm 5.3 MB/s | 219 kB 00:00 (22/137): grep-3.8-1.fc38.i686.rpm 25 MB/s | 289 kB 00:00 (23/137): libacl-2.3.1-4.fc38.i686.rpm 2.1 MB/s | 25 kB 00:00 (24/137): libattr-2.5.1-5.fc38.i686.rpm 1.5 MB/s | 19 kB 00:00 (25/137): libbrotli-1.0.9-9.fc38.i686.rpm 28 MB/s | 318 kB 00:00 (26/137): libcurl-7.87.0-1.fc38.i686.rpm 24 MB/s | 327 kB 00:00 (27/137): libfsverity-1.4-8.fc38.i686.rpm 1.5 MB/s | 21 kB 00:00 (28/137): python3-dbus-1.3.2-1.fc38.i686.rpm 15 MB/s | 151 kB 00:00 (29/137): python3-gpg-1.17.1-3.fc38.i686.rpm 23 MB/s | 277 kB 00:00 (30/137): libgcc-13.0.0-0.4.fc38.i686.rpm 574 kB/s | 101 kB 00:00 (31/137): libgomp-13.0.0-0.4.fc38.i686.rpm 1.5 MB/s | 304 kB 00:00 (32/137): libstdc++-13.0.0-0.4.fc38.i686.rpm 3.3 MB/s | 857 kB 00:00 (33/137): basesystem-11-14.fc37.noarch.rpm 119 kB/s | 7.0 kB 00:00 (34/137): audit-libs-3.0.9-2.fc38.i686.rpm 956 kB/s | 122 kB 00:00 (35/137): crypto-policies-20221215-1.gita4c31a3 1.7 MB/s | 63 kB 00:00 (36/137): dnf-data-4.14.0-1.fc38.noarch.rpm 2.9 MB/s | 43 kB 00:00 (37/137): dnf-plugins-core-4.3.1-1.fc38.noarch. 2.4 MB/s | 34 kB 00:00 (38/137): dnf-4.14.0-1.fc38.noarch.rpm 13 MB/s | 469 kB 00:00 (39/137): fedora-release-38-0.6.noarch.rpm 842 kB/s | 11 kB 00:00 (40/137): fedora-gpg-keys-38-0.3.noarch.rpm 4.3 MB/s | 115 kB 00:00 (41/137): fedora-release-common-38-0.6.noarch.r 1.5 MB/s | 21 kB 00:00 (42/137): fedora-release-identity-basic-38-0.6. 962 kB/s | 11 kB 00:00 (43/137): ca-certificates-2022.2.54-5.fc37.noar 7.0 MB/s | 829 kB 00:00 (44/137): fedora-repos-38-0.3.noarch.rpm 823 kB/s | 10 kB 00:00 (45/137): fedora-repos-rawhide-38-0.3.noarch.rp 724 kB/s | 9.7 kB 00:00 (46/137): filesystem-3.18-2.fc37.i686.rpm 31 MB/s | 1.1 MB 00:00 (47/137): glibc-common-2.36.9000-19.fc38.i686.r 8.1 MB/s | 315 kB 00:00 (48/137): glibc-minimal-langpack-2.36.9000-19.f 1.8 MB/s | 30 kB 00:00 (49/137): glibc-2.36.9000-19.fc38.i686.rpm 34 MB/s | 1.9 MB 00:00 (50/137): ima-evm-utils-1.4-6.fc37.i686.rpm 4.0 MB/s | 63 kB 00:00 (51/137): json-c-0.16-3.fc38.i686.rpm 3.2 MB/s | 44 kB 00:00 (52/137): keyutils-libs-1.6.1-5.fc37.i686.rpm 2.6 MB/s | 32 kB 00:00 (53/137): libassuan-2.5.5-5.fc37.i686.rpm 4.8 MB/s | 69 kB 00:00 (54/137): libarchive-3.6.1-3.fc38.i686.rpm 16 MB/s | 443 kB 00:00 (55/137): libb2-0.98.1-7.fc37.i686.rpm 2.0 MB/s | 35 kB 00:00 (56/137): krb5-libs-1.20.1-3.fc38.i686.rpm 19 MB/s | 763 kB 00:00 (57/137): libblkid-2.38.1-3.fc38.i686.rpm 7.8 MB/s | 116 kB 00:00 (58/137): libcap-2.48-5.fc37.i686.rpm 5.3 MB/s | 68 kB 00:00 (59/137): libcap-ng-0.8.3-4.fc38.i686.rpm 2.4 MB/s | 33 kB 00:00 (60/137): libcom_err-1.46.5-3.fc37.i686.rpm 2.3 MB/s | 26 kB 00:00 (61/137): libcomps-0.1.18-4.fc37.i686.rpm 5.5 MB/s | 84 kB 00:00 (62/137): libevent-2.1.12-7.fc37.i686.rpm 15 MB/s | 279 kB 00:00 (63/137): libffi-3.4.4-1.fc38.i686.rpm 2.4 MB/s | 36 kB 00:00 (64/137): libdnf-0.68.0-1.fc38.i686.rpm 19 MB/s | 722 kB 00:00 (65/137): libgpg-error-1.46-1.fc38.i686.rpm 11 MB/s | 225 kB 00:00 (66/137): libgcrypt-1.10.1-6.fc38.i686.rpm 19 MB/s | 484 kB 00:00 (67/137): libidn2-2.3.4-1.fc38.i686.rpm 10 MB/s | 154 kB 00:00 (68/137): libksba-1.6.3-1.fc38.i686.rpm 9.6 MB/s | 161 kB 00:00 (69/137): libmodulemd-2.14.0-4.fc37.i686.rpm 13 MB/s | 241 kB 00:00 (70/137): libmount-2.38.1-3.fc38.i686.rpm 8.4 MB/s | 141 kB 00:00 (71/137): libnghttp2-1.51.0-1.fc38.i686.rpm 5.1 MB/s | 80 kB 00:00 (72/137): libnsl2-2.0.0-4.fc37.i686.rpm 2.2 MB/s | 31 kB 00:00 (73/137): libpsl-0.21.1-6.fc37.i686.rpm 5.4 MB/s | 64 kB 00:00 (74/137): librepo-1.15.1-1.fc38.i686.rpm 6.9 MB/s | 102 kB 00:00 (75/137): libreport-filesystem-2.17.6-1.fc38.no 1.0 MB/s | 14 kB 00:00 (76/137): libselinux-3.4-6.fc38.i686.rpm 6.4 MB/s | 91 kB 00:00 (77/137): libsigsegv-2.14-3.fc37.i686.rpm 2.4 MB/s | 27 kB 00:00 (78/137): libsemanage-3.4-6.fc38.i686.rpm 7.7 MB/s | 128 kB 00:00 (79/137): libsepol-3.4-4.fc38.i686.rpm 17 MB/s | 336 kB 00:00 (80/137): libsmartcols-2.38.1-3.fc38.i686.rpm 5.0 MB/s | 65 kB 00:00 (81/137): libsolv-0.7.22-3.fc37.i686.rpm 20 MB/s | 428 kB 00:00 (82/137): libssh-0.10.4-2.fc38.i686.rpm 11 MB/s | 222 kB 00:00 (83/137): libssh-config-0.10.4-2.fc38.noarch.rp 577 kB/s | 8.8 kB 00:00 (84/137): libtasn1-4.19.0-1.fc38.i686.rpm 4.5 MB/s | 76 kB 00:00 (85/137): libtirpc-1.3.3-0.fc37.i686.rpm 6.1 MB/s | 101 kB 00:00 (86/137): libverto-0.3.2-4.fc37.i686.rpm 1.8 MB/s | 21 kB 00:00 (87/137): libuuid-2.38.1-3.fc38.i686.rpm 2.0 MB/s | 28 kB 00:00 (88/137): libunistring-1.0-2.fc37.i686.rpm 20 MB/s | 551 kB 00:00 (89/137): libxcrypt-4.4.33-5.fc38.i686.rpm 7.4 MB/s | 123 kB 00:00 (90/137): libyaml-0.2.5-8.fc37.i686.rpm 3.7 MB/s | 62 kB 00:00 (91/137): libxml2-2.10.3-2.fc38.i686.rpm 27 MB/s | 745 kB 00:00 (92/137): libzstd-1.5.2-3.fc37.i686.rpm 16 MB/s | 274 kB 00:00 (93/137): lua-libs-5.4.4-6.fc38.i686.rpm 7.8 MB/s | 148 kB 00:00 (94/137): lz4-libs-1.9.3-5.fc37.i686.rpm 5.8 MB/s | 72 kB 00:00 (95/137): mpdecimal-2.5.1-4.fc37.i686.rpm 6.8 MB/s | 106 kB 00:00 (96/137): ncurses-base-6.3-5.20221126.fc38.noar 3.5 MB/s | 61 kB 00:00 (97/137): mpfr-4.1.1-2.fc38.i686.rpm 20 MB/s | 637 kB 00:00 (98/137): ncurses-libs-6.3-5.20221126.fc38.i686 17 MB/s | 348 kB 00:00 (99/137): nettle-3.8-2.fc37.i686.rpm 21 MB/s | 430 kB 00:00 (100/137): npth-1.6-10.fc38.i686.rpm 1.8 MB/s | 24 kB 00:00 (101/137): openldap-2.6.3-1.fc38.i686.rpm 15 MB/s | 273 kB 00:00 (102/137): p11-kit-trust-0.24.1-5.fc38.i686.rpm 5.9 MB/s | 135 kB 00:00 (103/137): p11-kit-0.24.1-5.fc38.i686.rpm 8.7 MB/s | 335 kB 00:00 (104/137): pcre2-10.40-1.fc37.1.i686.rpm 9.5 MB/s | 234 kB 00:00 (105/137): openssl-libs-3.0.5-6.fc38.i686.rpm 35 MB/s | 2.1 MB 00:00 (106/137): pcre2-syntax-10.40-1.fc37.1.noarch.r 7.4 MB/s | 142 kB 00:00 (107/137): popt-1.19-1.fc38.i686.rpm 4.0 MB/s | 61 kB 00:00 (108/137): publicsuffix-list-dafsa-20221208-1.f 4.2 MB/s | 59 kB 00:00 (109/137): python3-3.11.1-1.fc38.i686.rpm 1.8 MB/s | 27 kB 00:00 (110/137): python-setuptools-wheel-65.5.1-1.fc3 28 MB/s | 715 kB 00:00 (111/137): python-pip-wheel-22.3.1-1.fc38.noarc 29 MB/s | 1.4 MB 00:00 (112/137): python3-dateutil-2.8.2-4.fc37.noarch 16 MB/s | 350 kB 00:00 (113/137): python3-distro-1.8.0-1.fc38.noarch.r 3.1 MB/s | 45 kB 00:00 (114/137): python3-hawkey-0.68.0-1.fc38.i686.rp 5.6 MB/s | 111 kB 00:00 (115/137): python3-dnf-plugins-core-4.3.1-1.fc3 11 MB/s | 263 kB 00:00 (116/137): python3-dnf-4.14.0-1.fc38.noarch.rpm 18 MB/s | 567 kB 00:00 (117/137): python3-libcomps-0.1.18-4.fc37.i686. 4.0 MB/s | 51 kB 00:00 (118/137): python3-libdnf-0.68.0-1.fc38.i686.rp 38 MB/s | 828 kB 00:00 (119/137): python3-rpm-4.18.0-8.fc38.i686.rpm 6.0 MB/s | 95 kB 00:00 (120/137): python3-six-1.16.0-8.fc37.noarch.rpm 2.9 MB/s | 42 kB 00:00 (121/137): rpm-4.18.0-8.fc38.i686.rpm 21 MB/s | 543 kB 00:00 (122/137): readline-8.2-2.fc38.i686.rpm 5.4 MB/s | 218 kB 00:00 (123/137): rpm-build-libs-4.18.0-8.fc38.i686.rp 7.1 MB/s | 102 kB 00:00 (124/137): rpm-libs-4.18.0-8.fc38.i686.rpm 15 MB/s | 341 kB 00:00 (125/137): rpm-sign-libs-4.18.0-8.fc38.i686.rpm 1.3 MB/s | 27 kB 00:00 (126/137): rpm-sequoia-1.2.0-1.fc38.i686.rpm 28 MB/s | 924 kB 00:00 (127/137): setup-2.14.3-1.fc38.noarch.rpm 8.3 MB/s | 146 kB 00:00 (128/137): sed-4.8-11.fc37.i686.rpm 14 MB/s | 300 kB 00:00 (129/137): sqlite-libs-3.40.0-1.fc38.i686.rpm 20 MB/s | 705 kB 00:00 (130/137): shadow-utils-4.13-3.fc38.i686.rpm 28 MB/s | 1.2 MB 00:00 (131/137): systemd-libs-252.4-598.fc38.i686.rpm 22 MB/s | 662 kB 00:00 (132/137): tpm2-tss-4.0.0-0.1.rc2.fc38.i686.rpm 18 MB/s | 603 kB 00:00 (133/137): python3-libs-3.11.1-1.fc38.i686.rpm 45 MB/s | 9.3 MB 00:00 (134/137): xz-libs-5.2.9-1.fc38.i686.rpm 7.9 MB/s | 101 kB 00:00 (135/137): tzdata-2022g-1.fc38.noarch.rpm 19 MB/s | 432 kB 00:00 (136/137): zchunk-libs-1.2.3-1.fc38.i686.rpm 3.6 MB/s | 54 kB 00:00 (137/137): zlib-1.2.13-1.fc38.i686.rpm 6.6 MB/s | 92 kB 00:00 -------------------------------------------------------------------------------- Total 39 MB/s | 57 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.i686 1/1 Preparing : 1/1 Installing : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 1/137 Running scriptlet: crypto-policies-20221215-1.gita4c31a3.fc38.noarc 1/137 Installing : tzdata-2022g-1.fc38.noarch 2/137 Installing : fedora-release-identity-basic-38-0.6.noarch 3/137 Installing : python-setuptools-wheel-65.5.1-1.fc38.noarch 4/137 Installing : publicsuffix-list-dafsa-20221208-1.fc38.noarch 5/137 Installing : pcre2-syntax-10.40-1.fc37.1.noarch 6/137 Installing : ncurses-base-6.3-5.20221126.fc38.noarch 7/137 Installing : libssh-config-0.10.4-2.fc38.noarch 8/137 Installing : libreport-filesystem-2.17.6-1.fc38.noarch 9/137 Installing : dnf-data-4.14.0-1.fc38.noarch 10/137 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : fedora-gpg-keys-38-0.3.noarch 11/137 Installing : fedora-release-38-0.6.noarch 12/137 Installing : fedora-release-common-38-0.6.noarch 13/137 Installing : fedora-repos-rawhide-38-0.3.noarch 14/137 Installing : fedora-repos-38-0.3.noarch 15/137 Installing : setup-2.14.3-1.fc38.noarch 16/137 Running scriptlet: setup-2.14.3-1.fc38.noarch 16/137 Installing : filesystem-3.18-2.fc37.i686 17/137 Installing : basesystem-11-14.fc37.noarch 18/137 Installing : coreutils-common-9.1-8.fc38.i686 19/137 Installing : libgcc-13.0.0-0.4.fc38.i686 20/137 Running scriptlet: libgcc-13.0.0-0.4.fc38.i686 20/137 Installing : ncurses-libs-6.3-5.20221126.fc38.i686 21/137 Running scriptlet: glibc-2.36.9000-19.fc38.i686 22/137 Installing : glibc-2.36.9000-19.fc38.i686 22/137 Running scriptlet: glibc-2.36.9000-19.fc38.i686 22/137 Installing : bash-5.2.9-3.fc38.i686 23/137 Running scriptlet: bash-5.2.9-3.fc38.i686 23/137 Installing : glibc-common-2.36.9000-19.fc38.i686 24/137 Installing : glibc-minimal-langpack-2.36.9000-19.fc38.i686 25/137 Installing : zlib-1.2.13-1.fc38.i686 26/137 Installing : bzip2-libs-1.0.8-12.fc38.i686 27/137 Installing : xz-libs-5.2.9-1.fc38.i686 28/137 Installing : libzstd-1.5.2-3.fc37.i686 29/137 Installing : sqlite-libs-3.40.0-1.fc38.i686 30/137 Installing : gmp-1:6.2.1-3.fc38.i686 31/137 Installing : libcap-2.48-5.fc37.i686 32/137 Installing : libgpg-error-1.46-1.fc38.i686 33/137 Installing : popt-1.19-1.fc38.i686 34/137 Installing : libxml2-2.10.3-2.fc38.i686 35/137 Installing : libstdc++-13.0.0-0.4.fc38.i686 36/137 Installing : libuuid-2.38.1-3.fc38.i686 37/137 Installing : lua-libs-5.4.4-6.fc38.i686 38/137 Installing : elfutils-libelf-0.188-3.fc38.i686 39/137 Installing : file-libs-5.42-4.fc38.i686 40/137 Installing : libattr-2.5.1-5.fc38.i686 41/137 Installing : libacl-2.3.1-4.fc38.i686 42/137 Installing : libffi-3.4.4-1.fc38.i686 43/137 Installing : p11-kit-0.24.1-5.fc38.i686 44/137 Installing : libunistring-1.0-2.fc37.i686 45/137 Installing : libidn2-2.3.4-1.fc38.i686 46/137 Installing : libxcrypt-4.4.33-5.fc38.i686 47/137 Installing : pcre2-10.40-1.fc37.1.i686 48/137 Installing : readline-8.2-2.fc38.i686 49/137 Installing : libassuan-2.5.5-5.fc37.i686 50/137 Installing : nettle-3.8-2.fc37.i686 51/137 Installing : rpm-sequoia-1.2.0-1.fc38.i686 52/137 Installing : expat-2.5.0-1.fc38.i686 53/137 Installing : gdbm-libs-1:1.23-2.fc38.i686 54/137 Installing : libgomp-13.0.0-0.4.fc38.i686 55/137 Installing : json-c-0.16-3.fc38.i686 56/137 Installing : keyutils-libs-1.6.1-5.fc37.i686 57/137 Installing : libcom_err-1.46.5-3.fc37.i686 58/137 Installing : libsepol-3.4-4.fc38.i686 59/137 Installing : libselinux-3.4-6.fc38.i686 60/137 Installing : sed-4.8-11.fc37.i686 61/137 Installing : libsmartcols-2.38.1-3.fc38.i686 62/137 Installing : libtasn1-4.19.0-1.fc38.i686 63/137 Installing : lz4-libs-1.9.3-5.fc37.i686 64/137 Installing : elfutils-default-yama-scope-0.188-3.fc38.noarch 65/137 Running scriptlet: elfutils-default-yama-scope-0.188-3.fc38.noarch 65/137 Installing : elfutils-libs-0.188-3.fc38.i686 66/137 Installing : systemd-libs-252.4-598.fc38.i686 67/137 Installing : dbus-libs-1:1.14.4-1.fc38.i686 68/137 Installing : findutils-1:4.9.0-2.fc38.i686 69/137 Installing : libb2-0.98.1-7.fc37.i686 70/137 Installing : cyrus-sasl-lib-2.1.28-8.fc38.i686 71/137 Installing : libcomps-0.1.18-4.fc37.i686 72/137 Installing : grep-3.8-1.fc38.i686 73/137 Installing : libpsl-0.21.1-6.fc37.i686 74/137 Installing : libblkid-2.38.1-3.fc38.i686 75/137 Installing : libmount-2.38.1-3.fc38.i686 76/137 Installing : mpdecimal-2.5.1-4.fc37.i686 77/137 Installing : libgcrypt-1.10.1-6.fc38.i686 78/137 Installing : libksba-1.6.3-1.fc38.i686 79/137 Installing : mpfr-4.1.1-2.fc38.i686 80/137 Installing : alternatives-1.21-1.fc38.i686 81/137 Installing : p11-kit-trust-0.24.1-5.fc38.i686 82/137 Running scriptlet: p11-kit-trust-0.24.1-5.fc38.i686 82/137 Installing : openssl-libs-1:3.0.5-6.fc38.i686 83/137 Installing : coreutils-9.1-8.fc38.i686 84/137 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 85/137 Installing : ca-certificates-2022.2.54-5.fc37.noarch 85/137 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 85/137 Installing : libfsverity-1.4-8.fc38.i686 86/137 Installing : zchunk-libs-1.2.3-1.fc38.i686 87/137 Installing : gnutls-3.7.8-9.fc38.i686 88/137 Installing : python-pip-wheel-22.3.1-1.fc38.noarch 89/137 Installing : glib2-2.74.1-2.fc38.i686 90/137 Installing : libarchive-3.6.1-3.fc38.i686 91/137 Installing : libevent-2.1.12-7.fc37.i686 92/137 Installing : openldap-2.6.3-1.fc38.i686 93/137 Installing : libbrotli-1.0.9-9.fc38.i686 94/137 Installing : libcap-ng-0.8.3-4.fc38.i686 95/137 Installing : audit-libs-3.0.9-2.fc38.i686 96/137 Installing : rpm-libs-4.18.0-8.fc38.i686 97/137 Installing : libsolv-0.7.22-3.fc37.i686 98/137 Installing : rpm-build-libs-4.18.0-8.fc38.i686 99/137 Installing : libsemanage-3.4-6.fc38.i686 100/137 Installing : shadow-utils-2:4.13-3.fc38.i686 101/137 Installing : libnghttp2-1.51.0-1.fc38.i686 102/137 Installing : libsigsegv-2.14-3.fc37.i686 103/137 Installing : gawk-5.1.1-4.fc38.i686 104/137 Installing : libverto-0.3.2-4.fc37.i686 105/137 Installing : krb5-libs-1.20.1-3.fc38.i686 106/137 Installing : libtirpc-1.3.3-0.fc37.i686 107/137 Installing : libnsl2-2.0.0-4.fc37.i686 108/137 Installing : python3-3.11.1-1.fc38.i686 109/137 Installing : python3-libs-3.11.1-1.fc38.i686 110/137 Installing : python3-distro-1.8.0-1.fc38.noarch 111/137 Installing : python3-six-1.16.0-8.fc37.noarch 112/137 Installing : python3-dbus-1.3.2-1.fc38.i686 113/137 Installing : python3-dateutil-1:2.8.2-4.fc37.noarch 114/137 Installing : python3-libcomps-0.1.18-4.fc37.i686 115/137 Installing : libssh-0.10.4-2.fc38.i686 116/137 Installing : libcurl-7.87.0-1.fc38.i686 117/137 Installing : curl-7.87.0-1.fc38.i686 118/137 Running scriptlet: tpm2-tss-4.0.0-0.1.rc2.fc38.i686 119/137 useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Installing : tpm2-tss-4.0.0-0.1.rc2.fc38.i686 119/137 Installing : ima-evm-utils-1.4-6.fc37.i686 120/137 Installing : libyaml-0.2.5-8.fc37.i686 121/137 Installing : libmodulemd-2.14.0-4.fc37.i686 122/137 Installing : npth-1.6-10.fc38.i686 123/137 Installing : gnupg2-2.3.8-1.fc38.i686 124/137 Installing : gpgme-1.17.1-3.fc38.i686 125/137 Installing : python3-gpg-1.17.1-3.fc38.i686 126/137 Installing : librepo-1.15.1-1.fc38.i686 127/137 Installing : libdnf-0.68.0-1.fc38.i686 128/137 Installing : python3-libdnf-0.68.0-1.fc38.i686 129/137 Installing : python3-hawkey-0.68.0-1.fc38.i686 130/137 Installing : rpm-sign-libs-4.18.0-8.fc38.i686 131/137 Installing : python3-rpm-4.18.0-8.fc38.i686 132/137 Installing : python3-dnf-4.14.0-1.fc38.noarch 133/137 Installing : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 134/137 Installing : dnf-plugins-core-4.3.1-1.fc38.noarch 135/137 Installing : dnf-4.14.0-1.fc38.noarch 136/137 Running scriptlet: dnf-4.14.0-1.fc38.noarch 136/137 Running scriptlet: rpm-4.18.0-8.fc38.i686 137/137 Installing : rpm-4.18.0-8.fc38.i686 137/137 Running scriptlet: filesystem-3.18-2.fc37.i686 137/137 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 137/137 Running scriptlet: rpm-4.18.0-8.fc38.i686 137/137 Verifying : alternatives-1.21-1.fc38.i686 1/137 Verifying : bash-5.2.9-3.fc38.i686 2/137 Verifying : bzip2-libs-1.0.8-12.fc38.i686 3/137 Verifying : coreutils-9.1-8.fc38.i686 4/137 Verifying : coreutils-common-9.1-8.fc38.i686 5/137 Verifying : curl-7.87.0-1.fc38.i686 6/137 Verifying : cyrus-sasl-lib-2.1.28-8.fc38.i686 7/137 Verifying : dbus-libs-1:1.14.4-1.fc38.i686 8/137 Verifying : elfutils-default-yama-scope-0.188-3.fc38.noarch 9/137 Verifying : elfutils-libelf-0.188-3.fc38.i686 10/137 Verifying : elfutils-libs-0.188-3.fc38.i686 11/137 Verifying : expat-2.5.0-1.fc38.i686 12/137 Verifying : file-libs-5.42-4.fc38.i686 13/137 Verifying : findutils-1:4.9.0-2.fc38.i686 14/137 Verifying : gawk-5.1.1-4.fc38.i686 15/137 Verifying : gdbm-libs-1:1.23-2.fc38.i686 16/137 Verifying : glib2-2.74.1-2.fc38.i686 17/137 Verifying : gmp-1:6.2.1-3.fc38.i686 18/137 Verifying : gnupg2-2.3.8-1.fc38.i686 19/137 Verifying : gnutls-3.7.8-9.fc38.i686 20/137 Verifying : gpgme-1.17.1-3.fc38.i686 21/137 Verifying : grep-3.8-1.fc38.i686 22/137 Verifying : libacl-2.3.1-4.fc38.i686 23/137 Verifying : libattr-2.5.1-5.fc38.i686 24/137 Verifying : libbrotli-1.0.9-9.fc38.i686 25/137 Verifying : libcurl-7.87.0-1.fc38.i686 26/137 Verifying : libfsverity-1.4-8.fc38.i686 27/137 Verifying : python3-dbus-1.3.2-1.fc38.i686 28/137 Verifying : python3-gpg-1.17.1-3.fc38.i686 29/137 Verifying : libgcc-13.0.0-0.4.fc38.i686 30/137 Verifying : libgomp-13.0.0-0.4.fc38.i686 31/137 Verifying : libstdc++-13.0.0-0.4.fc38.i686 32/137 Verifying : audit-libs-3.0.9-2.fc38.i686 33/137 Verifying : basesystem-11-14.fc37.noarch 34/137 Verifying : ca-certificates-2022.2.54-5.fc37.noarch 35/137 Verifying : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 36/137 Verifying : dnf-4.14.0-1.fc38.noarch 37/137 Verifying : dnf-data-4.14.0-1.fc38.noarch 38/137 Verifying : dnf-plugins-core-4.3.1-1.fc38.noarch 39/137 Verifying : fedora-gpg-keys-38-0.3.noarch 40/137 Verifying : fedora-release-38-0.6.noarch 41/137 Verifying : fedora-release-common-38-0.6.noarch 42/137 Verifying : fedora-release-identity-basic-38-0.6.noarch 43/137 Verifying : fedora-repos-38-0.3.noarch 44/137 Verifying : fedora-repos-rawhide-38-0.3.noarch 45/137 Verifying : filesystem-3.18-2.fc37.i686 46/137 Verifying : glibc-2.36.9000-19.fc38.i686 47/137 Verifying : glibc-common-2.36.9000-19.fc38.i686 48/137 Verifying : glibc-minimal-langpack-2.36.9000-19.fc38.i686 49/137 Verifying : ima-evm-utils-1.4-6.fc37.i686 50/137 Verifying : json-c-0.16-3.fc38.i686 51/137 Verifying : keyutils-libs-1.6.1-5.fc37.i686 52/137 Verifying : krb5-libs-1.20.1-3.fc38.i686 53/137 Verifying : libarchive-3.6.1-3.fc38.i686 54/137 Verifying : libassuan-2.5.5-5.fc37.i686 55/137 Verifying : libb2-0.98.1-7.fc37.i686 56/137 Verifying : libblkid-2.38.1-3.fc38.i686 57/137 Verifying : libcap-2.48-5.fc37.i686 58/137 Verifying : libcap-ng-0.8.3-4.fc38.i686 59/137 Verifying : libcom_err-1.46.5-3.fc37.i686 60/137 Verifying : libcomps-0.1.18-4.fc37.i686 61/137 Verifying : libdnf-0.68.0-1.fc38.i686 62/137 Verifying : libevent-2.1.12-7.fc37.i686 63/137 Verifying : libffi-3.4.4-1.fc38.i686 64/137 Verifying : libgcrypt-1.10.1-6.fc38.i686 65/137 Verifying : libgpg-error-1.46-1.fc38.i686 66/137 Verifying : libidn2-2.3.4-1.fc38.i686 67/137 Verifying : libksba-1.6.3-1.fc38.i686 68/137 Verifying : libmodulemd-2.14.0-4.fc37.i686 69/137 Verifying : libmount-2.38.1-3.fc38.i686 70/137 Verifying : libnghttp2-1.51.0-1.fc38.i686 71/137 Verifying : libnsl2-2.0.0-4.fc37.i686 72/137 Verifying : libpsl-0.21.1-6.fc37.i686 73/137 Verifying : librepo-1.15.1-1.fc38.i686 74/137 Verifying : libreport-filesystem-2.17.6-1.fc38.noarch 75/137 Verifying : libselinux-3.4-6.fc38.i686 76/137 Verifying : libsemanage-3.4-6.fc38.i686 77/137 Verifying : libsepol-3.4-4.fc38.i686 78/137 Verifying : libsigsegv-2.14-3.fc37.i686 79/137 Verifying : libsmartcols-2.38.1-3.fc38.i686 80/137 Verifying : libsolv-0.7.22-3.fc37.i686 81/137 Verifying : libssh-0.10.4-2.fc38.i686 82/137 Verifying : libssh-config-0.10.4-2.fc38.noarch 83/137 Verifying : libtasn1-4.19.0-1.fc38.i686 84/137 Verifying : libtirpc-1.3.3-0.fc37.i686 85/137 Verifying : libunistring-1.0-2.fc37.i686 86/137 Verifying : libuuid-2.38.1-3.fc38.i686 87/137 Verifying : libverto-0.3.2-4.fc37.i686 88/137 Verifying : libxcrypt-4.4.33-5.fc38.i686 89/137 Verifying : libxml2-2.10.3-2.fc38.i686 90/137 Verifying : libyaml-0.2.5-8.fc37.i686 91/137 Verifying : libzstd-1.5.2-3.fc37.i686 92/137 Verifying : lua-libs-5.4.4-6.fc38.i686 93/137 Verifying : lz4-libs-1.9.3-5.fc37.i686 94/137 Verifying : mpdecimal-2.5.1-4.fc37.i686 95/137 Verifying : mpfr-4.1.1-2.fc38.i686 96/137 Verifying : ncurses-base-6.3-5.20221126.fc38.noarch 97/137 Verifying : ncurses-libs-6.3-5.20221126.fc38.i686 98/137 Verifying : nettle-3.8-2.fc37.i686 99/137 Verifying : npth-1.6-10.fc38.i686 100/137 Verifying : openldap-2.6.3-1.fc38.i686 101/137 Verifying : openssl-libs-1:3.0.5-6.fc38.i686 102/137 Verifying : p11-kit-0.24.1-5.fc38.i686 103/137 Verifying : p11-kit-trust-0.24.1-5.fc38.i686 104/137 Verifying : pcre2-10.40-1.fc37.1.i686 105/137 Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 106/137 Verifying : popt-1.19-1.fc38.i686 107/137 Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 108/137 Verifying : python-pip-wheel-22.3.1-1.fc38.noarch 109/137 Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 110/137 Verifying : python3-3.11.1-1.fc38.i686 111/137 Verifying : python3-dateutil-1:2.8.2-4.fc37.noarch 112/137 Verifying : python3-distro-1.8.0-1.fc38.noarch 113/137 Verifying : python3-dnf-4.14.0-1.fc38.noarch 114/137 Verifying : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 115/137 Verifying : python3-hawkey-0.68.0-1.fc38.i686 116/137 Verifying : python3-libcomps-0.1.18-4.fc37.i686 117/137 Verifying : python3-libdnf-0.68.0-1.fc38.i686 118/137 Verifying : python3-libs-3.11.1-1.fc38.i686 119/137 Verifying : python3-rpm-4.18.0-8.fc38.i686 120/137 Verifying : python3-six-1.16.0-8.fc37.noarch 121/137 Verifying : readline-8.2-2.fc38.i686 122/137 Verifying : rpm-4.18.0-8.fc38.i686 123/137 Verifying : rpm-build-libs-4.18.0-8.fc38.i686 124/137 Verifying : rpm-libs-4.18.0-8.fc38.i686 125/137 Verifying : rpm-sequoia-1.2.0-1.fc38.i686 126/137 Verifying : rpm-sign-libs-4.18.0-8.fc38.i686 127/137 Verifying : sed-4.8-11.fc37.i686 128/137 Verifying : setup-2.14.3-1.fc38.noarch 129/137 Verifying : shadow-utils-2:4.13-3.fc38.i686 130/137 Verifying : sqlite-libs-3.40.0-1.fc38.i686 131/137 Verifying : systemd-libs-252.4-598.fc38.i686 132/137 Verifying : tpm2-tss-4.0.0-0.1.rc2.fc38.i686 133/137 Verifying : tzdata-2022g-1.fc38.noarch 134/137 Verifying : xz-libs-5.2.9-1.fc38.i686 135/137 Verifying : zchunk-libs-1.2.3-1.fc38.i686 136/137 Verifying : zlib-1.2.13-1.fc38.i686 137/137 Installed products updated. Installed: alternatives-1.21-1.fc38.i686 audit-libs-3.0.9-2.fc38.i686 basesystem-11-14.fc37.noarch bash-5.2.9-3.fc38.i686 bzip2-libs-1.0.8-12.fc38.i686 ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-8.fc38.i686 coreutils-common-9.1-8.fc38.i686 crypto-policies-20221215-1.gita4c31a3.fc38.noarch curl-7.87.0-1.fc38.i686 cyrus-sasl-lib-2.1.28-8.fc38.i686 dbus-libs-1:1.14.4-1.fc38.i686 dnf-4.14.0-1.fc38.noarch dnf-data-4.14.0-1.fc38.noarch dnf-plugins-core-4.3.1-1.fc38.noarch elfutils-default-yama-scope-0.188-3.fc38.noarch elfutils-libelf-0.188-3.fc38.i686 elfutils-libs-0.188-3.fc38.i686 expat-2.5.0-1.fc38.i686 fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.6.noarch fedora-release-common-38-0.6.noarch fedora-release-identity-basic-38-0.6.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-libs-5.42-4.fc38.i686 filesystem-3.18-2.fc37.i686 findutils-1:4.9.0-2.fc38.i686 gawk-5.1.1-4.fc38.i686 gdbm-libs-1:1.23-2.fc38.i686 glib2-2.74.1-2.fc38.i686 glibc-2.36.9000-19.fc38.i686 glibc-common-2.36.9000-19.fc38.i686 glibc-minimal-langpack-2.36.9000-19.fc38.i686 gmp-1:6.2.1-3.fc38.i686 gnupg2-2.3.8-1.fc38.i686 gnutls-3.7.8-9.fc38.i686 gpgme-1.17.1-3.fc38.i686 grep-3.8-1.fc38.i686 ima-evm-utils-1.4-6.fc37.i686 json-c-0.16-3.fc38.i686 keyutils-libs-1.6.1-5.fc37.i686 krb5-libs-1.20.1-3.fc38.i686 libacl-2.3.1-4.fc38.i686 libarchive-3.6.1-3.fc38.i686 libassuan-2.5.5-5.fc37.i686 libattr-2.5.1-5.fc38.i686 libb2-0.98.1-7.fc37.i686 libblkid-2.38.1-3.fc38.i686 libbrotli-1.0.9-9.fc38.i686 libcap-2.48-5.fc37.i686 libcap-ng-0.8.3-4.fc38.i686 libcom_err-1.46.5-3.fc37.i686 libcomps-0.1.18-4.fc37.i686 libcurl-7.87.0-1.fc38.i686 libdnf-0.68.0-1.fc38.i686 libevent-2.1.12-7.fc37.i686 libffi-3.4.4-1.fc38.i686 libfsverity-1.4-8.fc38.i686 libgcc-13.0.0-0.4.fc38.i686 libgcrypt-1.10.1-6.fc38.i686 libgomp-13.0.0-0.4.fc38.i686 libgpg-error-1.46-1.fc38.i686 libidn2-2.3.4-1.fc38.i686 libksba-1.6.3-1.fc38.i686 libmodulemd-2.14.0-4.fc37.i686 libmount-2.38.1-3.fc38.i686 libnghttp2-1.51.0-1.fc38.i686 libnsl2-2.0.0-4.fc37.i686 libpsl-0.21.1-6.fc37.i686 librepo-1.15.1-1.fc38.i686 libreport-filesystem-2.17.6-1.fc38.noarch libselinux-3.4-6.fc38.i686 libsemanage-3.4-6.fc38.i686 libsepol-3.4-4.fc38.i686 libsigsegv-2.14-3.fc37.i686 libsmartcols-2.38.1-3.fc38.i686 libsolv-0.7.22-3.fc37.i686 libssh-0.10.4-2.fc38.i686 libssh-config-0.10.4-2.fc38.noarch libstdc++-13.0.0-0.4.fc38.i686 libtasn1-4.19.0-1.fc38.i686 libtirpc-1.3.3-0.fc37.i686 libunistring-1.0-2.fc37.i686 libuuid-2.38.1-3.fc38.i686 libverto-0.3.2-4.fc37.i686 libxcrypt-4.4.33-5.fc38.i686 libxml2-2.10.3-2.fc38.i686 libyaml-0.2.5-8.fc37.i686 libzstd-1.5.2-3.fc37.i686 lua-libs-5.4.4-6.fc38.i686 lz4-libs-1.9.3-5.fc37.i686 mpdecimal-2.5.1-4.fc37.i686 mpfr-4.1.1-2.fc38.i686 ncurses-base-6.3-5.20221126.fc38.noarch ncurses-libs-6.3-5.20221126.fc38.i686 nettle-3.8-2.fc37.i686 npth-1.6-10.fc38.i686 openldap-2.6.3-1.fc38.i686 openssl-libs-1:3.0.5-6.fc38.i686 p11-kit-0.24.1-5.fc38.i686 p11-kit-trust-0.24.1-5.fc38.i686 pcre2-10.40-1.fc37.1.i686 pcre2-syntax-10.40-1.fc37.1.noarch popt-1.19-1.fc38.i686 publicsuffix-list-dafsa-20221208-1.fc38.noarch python-pip-wheel-22.3.1-1.fc38.noarch python-setuptools-wheel-65.5.1-1.fc38.noarch python3-3.11.1-1.fc38.i686 python3-dateutil-1:2.8.2-4.fc37.noarch python3-dbus-1.3.2-1.fc38.i686 python3-distro-1.8.0-1.fc38.noarch python3-dnf-4.14.0-1.fc38.noarch python3-dnf-plugins-core-4.3.1-1.fc38.noarch python3-gpg-1.17.1-3.fc38.i686 python3-hawkey-0.68.0-1.fc38.i686 python3-libcomps-0.1.18-4.fc37.i686 python3-libdnf-0.68.0-1.fc38.i686 python3-libs-3.11.1-1.fc38.i686 python3-rpm-4.18.0-8.fc38.i686 python3-six-1.16.0-8.fc37.noarch readline-8.2-2.fc38.i686 rpm-4.18.0-8.fc38.i686 rpm-build-libs-4.18.0-8.fc38.i686 rpm-libs-4.18.0-8.fc38.i686 rpm-sequoia-1.2.0-1.fc38.i686 rpm-sign-libs-4.18.0-8.fc38.i686 sed-4.8-11.fc37.i686 setup-2.14.3-1.fc38.noarch shadow-utils-2:4.13-3.fc38.i686 sqlite-libs-3.40.0-1.fc38.i686 systemd-libs-252.4-598.fc38.i686 tpm2-tss-4.0.0-0.1.rc2.fc38.i686 tzdata-2022g-1.fc38.noarch xz-libs-5.2.9-1.fc38.i686 zchunk-libs-1.2.3-1.fc38.i686 zlib-1.2.13-1.fc38.i686 Complete! Finish(bootstrap): dnf install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1671965880.632776/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 12 kB/s | 3.0 kB 00:00 Copr repository 22 MB/s | 16 MB 00:00 Additional repo https_jakub_fedorapeople_org_fe 2.4 kB/s | 3.0 kB 00:01 local 14 kB/s | 3.8 kB 00:00 Dependencies resolved. ========================================================================================================================= Package Arch Version Repository Size ========================================================================================================================= Installing group/module packages: bash i686 5.2.9-3.fc38 copr_base 1.8 M bzip2 i686 1.0.8-12.fc38 copr_base 53 k coreutils i686 9.1-8.fc38 copr_base 1.1 M cpio i686 2.13-13.fc38 copr_base 274 k diffutils i686 3.8-3.fc38 copr_base 375 k fedora-release noarch 38-0.6 local 11 k findutils i686 1:4.9.0-2.fc38 copr_base 494 k gawk i686 5.1.1-4.fc38 copr_base 1.0 M glibc-minimal-langpack i686 2.36.9000-19.fc38 local 30 k grep i686 3.8-1.fc38 copr_base 289 k gzip i686 1.12-2.fc38 copr_base 158 k info i686 7.0.1-1.fc38 local 183 k patch i686 2.7.6-17.fc37 local 137 k redhat-rpm-config noarch 235-1.fc38 local 74 k rpm-build i686 4.18.0-8.fc38 local 69 k sed i686 4.8-11.fc37 local 300 k shadow-utils i686 2:4.13-3.fc38 local 1.2 M tar i686 2:1.34-5.fc38 local 892 k unzip i686 6.0-58.fc38 local 177 k util-linux i686 2.38.1-3.fc38 local 2.3 M which i686 2.21-36.fc38 local 42 k xz i686 5.2.9-1.fc38 local 300 k Installing dependencies: alternatives i686 1.21-1.fc38 copr_base 39 k ansible-srpm-macros noarch 1-8.1.fc38 local 8.6 k audit-libs i686 3.0.9-2.fc38 local 122 k authselect i686 1.4.2-1.fc38 copr_base 141 k authselect-libs i686 1.4.2-1.fc38 copr_base 239 k basesystem noarch 11-14.fc37 local 7.0 k binutils i686 2.39-6.fc38 copr_base 5.6 M binutils-gold i686 2.39-6.fc38 copr_base 853 k bzip2-libs i686 1.0.8-12.fc38 copr_base 42 k ca-certificates noarch 2022.2.54-5.fc37 local 829 k coreutils-common i686 9.1-8.fc38 copr_base 2.0 M cracklib i686 2.9.7-30.fc38 copr_base 82 k crypto-policies noarch 20221215-1.gita4c31a3.fc38 local 63 k curl i686 7.87.0-1.fc38 copr_base 347 k cyrus-sasl-lib i686 2.1.28-8.fc38 copr_base 858 k debugedit i686 5.0-5.fc37 local 78 k dwz i686 0.15-1.fc38 copr_base 144 k ed i686 1.18-2.fc38 copr_base 78 k efi-srpm-macros noarch 5-6.fc37 local 22 k elfutils i686 0.188-3.fc38 copr_base 543 k elfutils-debuginfod-client i686 0.188-3.fc38 copr_base 41 k elfutils-default-yama-scope noarch 0.188-3.fc38 copr_base 16 k elfutils-libelf i686 0.188-3.fc38 copr_base 204 k elfutils-libs i686 0.188-3.fc38 copr_base 287 k fedora-gpg-keys noarch 38-0.3 local 115 k fedora-release-common noarch 38-0.6 local 21 k fedora-release-identity-basic noarch 38-0.6 local 11 k fedora-repos noarch 38-0.3 local 10 k fedora-repos-rawhide noarch 38-0.3 local 9.7 k file i686 5.42-4.fc38 copr_base 49 k file-libs i686 5.42-4.fc38 copr_base 684 k filesystem i686 3.18-2.fc37 local 1.1 M fonts-srpm-macros noarch 1:2.0.5-10.fc38 local 26 k fpc-srpm-macros noarch 1.3-6.fc37 local 7.7 k gdb-minimal i686 12.1-10.fc38 local 3.9 M gdbm-libs i686 1:1.23-2.fc38 copr_base 60 k ghc-srpm-macros noarch 1.5.0-7.fc37 local 7.8 k glibc i686 2.36.9000-19.fc38 local 1.9 M glibc-common i686 2.36.9000-19.fc38 local 315 k glibc-gconv-extra i686 2.36.9000-19.fc38 local 1.6 M gmp i686 1:6.2.1-3.fc38 copr_base 306 k gnat-srpm-macros noarch 4-16.fc37 local 8.3 k go-srpm-macros noarch 3.2.0-1.fc38 local 27 k jansson i686 2.13.1-5.fc37 local 46 k kernel-srpm-macros noarch 1.0-15.fc37 local 9.4 k keyutils-libs i686 1.6.1-5.fc37 local 32 k krb5-libs i686 1.20.1-3.fc38 local 763 k libacl i686 2.3.1-4.fc38 copr_base 25 k libarchive i686 3.6.1-3.fc38 local 443 k libattr i686 2.5.1-5.fc38 copr_base 19 k libblkid i686 2.38.1-3.fc38 local 116 k libbrotli i686 1.0.9-9.fc38 copr_base 318 k libcap i686 2.48-5.fc37 local 68 k libcap-ng i686 0.8.3-4.fc38 local 33 k libcom_err i686 1.46.5-3.fc37 local 26 k libcurl i686 7.87.0-1.fc38 copr_base 327 k libdb i686 5.3.28-54.fc38 local 827 k libeconf i686 0.4.0-4.fc37 local 29 k libevent i686 2.1.12-7.fc37 local 279 k libfdisk i686 2.38.1-3.fc38 local 173 k libffi i686 3.4.4-1.fc38 local 36 k libgcc i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 101 k libgomp i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 304 k libidn2 i686 2.3.4-1.fc38 local 154 k libmount i686 2.38.1-3.fc38 local 141 k libnghttp2 i686 1.51.0-1.fc38 local 80 k libnsl2 i686 2.0.0-4.fc37 local 31 k libpkgconf i686 1.8.0-3.fc37 local 38 k libpsl i686 0.21.1-6.fc37 local 64 k libpwquality i686 1.4.5-1.fc38 local 108 k libselinux i686 3.4-6.fc38 local 91 k libsemanage i686 3.4-6.fc38 local 128 k libsepol i686 3.4-4.fc38 local 336 k libsigsegv i686 2.14-3.fc37 local 27 k libsmartcols i686 2.38.1-3.fc38 local 65 k libssh i686 0.10.4-2.fc38 local 222 k libssh-config noarch 0.10.4-2.fc38 local 8.8 k libstdc++ i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 857 k libtasn1 i686 4.19.0-1.fc38 local 76 k libtirpc i686 1.3.3-0.fc37 local 101 k libunistring i686 1.0-2.fc37 local 551 k libutempter i686 1.2.1-7.fc37 local 26 k libuuid i686 2.38.1-3.fc38 local 28 k libverto i686 0.3.2-4.fc37 local 21 k libxcrypt i686 4.4.33-5.fc38 local 123 k libxml2 i686 2.10.3-2.fc38 local 745 k libzstd i686 1.5.2-3.fc37 local 274 k lua-libs i686 5.4.4-6.fc38 local 148 k lua-srpm-macros noarch 1-7.fc37 local 8.8 k lz4-libs i686 1.9.3-5.fc37 local 72 k mpfr i686 4.1.1-2.fc38 local 637 k ncurses-base noarch 6.3-5.20221126.fc38 local 61 k ncurses-libs i686 6.3-5.20221126.fc38 local 348 k nettle i686 3.8-2.fc37 local 430 k nim-srpm-macros noarch 3-7.fc37 local 8.4 k ocaml-srpm-macros noarch 7-2.fc37 local 13 k openblas-srpm-macros noarch 2-12.fc37 local 7.5 k openldap i686 2.6.3-1.fc38 local 273 k openssl-libs i686 1:3.0.5-6.fc38 local 2.1 M p11-kit i686 0.24.1-5.fc38 local 335 k p11-kit-trust i686 0.24.1-5.fc38 local 135 k package-notes-srpm-macros noarch 0.5-6.fc38 local 11 k pam i686 1.5.2-15.fc38 local 535 k pam-libs i686 1.5.2-15.fc38 local 60 k pcre2 i686 10.40-1.fc37.1 local 234 k pcre2-syntax noarch 10.40-1.fc37.1 local 142 k perl-srpm-macros noarch 1-47.fc38 local 8.2 k pkgconf i686 1.8.0-3.fc37 local 42 k pkgconf-m4 noarch 1.8.0-3.fc37 local 14 k pkgconf-pkg-config i686 1.8.0-3.fc37 local 10 k popt i686 1.19-1.fc38 local 61 k publicsuffix-list-dafsa noarch 20221208-1.fc38 local 59 k python-srpm-macros noarch 3.11-6.fc38 local 25 k qt5-srpm-macros noarch 5.15.7-1.fc38 local 7.9 k readline i686 8.2-2.fc38 local 218 k rpm i686 4.18.0-8.fc38 local 543 k rpm-build-libs i686 4.18.0-8.fc38 local 102 k rpm-libs i686 4.18.0-8.fc38 local 341 k rpm-sequoia i686 1.2.0-1.fc38 local 924 k rpmautospec-rpm-macros noarch 0.3.1-1.fc38 local 8.8 k rust-srpm-macros noarch 23-1.fc38 local 9.4 k setup noarch 2.14.3-1.fc38 local 146 k sqlite-libs i686 3.40.0-1.fc38 local 705 k systemd-libs i686 252.4-598.fc38 local 662 k tzdata noarch 2022g-1.fc38 local 432 k util-linux-core i686 2.38.1-3.fc38 local 467 k xxhash-libs i686 0.8.1-3.fc37 local 59 k xz-libs i686 5.2.9-1.fc38 local 101 k zip i686 3.0-35.fc38 local 263 k zlib i686 1.2.13-1.fc38 local 92 k zstd i686 1.5.2-3.fc37 local 418 k Installing Groups: build Transaction Summary ========================================================================================================================= Install 153 Packages Total size: 53 M Installed size: 179 M Downloading Packages: [SKIPPED] alternatives-1.21-1.fc38.i686.rpm: Already downloaded [SKIPPED] authselect-1.4.2-1.fc38.i686.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.2-1.fc38.i686.rpm: Already downloaded [SKIPPED] bash-5.2.9-3.fc38.i686.rpm: Already downloaded [SKIPPED] binutils-2.39-6.fc38.i686.rpm: Already downloaded [SKIPPED] binutils-gold-2.39-6.fc38.i686.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-12.fc38.i686.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-12.fc38.i686.rpm: Already downloaded [SKIPPED] coreutils-9.1-8.fc38.i686.rpm: Already downloaded [SKIPPED] coreutils-common-9.1-8.fc38.i686.rpm: Already downloaded [SKIPPED] cpio-2.13-13.fc38.i686.rpm: Already downloaded [SKIPPED] cracklib-2.9.7-30.fc38.i686.rpm: Already downloaded [SKIPPED] curl-7.87.0-1.fc38.i686.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-8.fc38.i686.rpm: Already downloaded [SKIPPED] diffutils-3.8-3.fc38.i686.rpm: Already downloaded [SKIPPED] dwz-0.15-1.fc38.i686.rpm: Already downloaded [SKIPPED] ed-1.18-2.fc38.i686.rpm: Already downloaded [SKIPPED] elfutils-0.188-3.fc38.i686.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.188-3.fc38.i686.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.188-3.fc38.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.188-3.fc38.i686.rpm: Already downloaded [SKIPPED] elfutils-libs-0.188-3.fc38.i686.rpm: Already downloaded [SKIPPED] file-5.42-4.fc38.i686.rpm: Already downloaded [SKIPPED] file-libs-5.42-4.fc38.i686.rpm: Already downloaded [SKIPPED] findutils-4.9.0-2.fc38.i686.rpm: Already downloaded [SKIPPED] gawk-5.1.1-4.fc38.i686.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-2.fc38.i686.rpm: Already downloaded [SKIPPED] gmp-6.2.1-3.fc38.i686.rpm: Already downloaded [SKIPPED] grep-3.8-1.fc38.i686.rpm: Already downloaded [SKIPPED] gzip-1.12-2.fc38.i686.rpm: Already downloaded [SKIPPED] libacl-2.3.1-4.fc38.i686.rpm: Already downloaded [SKIPPED] libattr-2.5.1-5.fc38.i686.rpm: Already downloaded [SKIPPED] libbrotli-1.0.9-9.fc38.i686.rpm: Already downloaded [SKIPPED] libcurl-7.87.0-1.fc38.i686.rpm: Already downloaded [SKIPPED] libgcc-13.0.0-0.4.fc38.i686.rpm: Already downloaded [SKIPPED] libgomp-13.0.0-0.4.fc38.i686.rpm: Already downloaded [SKIPPED] libstdc++-13.0.0-0.4.fc38.i686.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-8.1.fc38.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.0.9-2.fc38.i686.rpm: Already downloaded [SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded [SKIPPED] ca-certificates-2022.2.54-5.fc37.noarch.rpm: Already downloaded [SKIPPED] crypto-policies-20221215-1.gita4c31a3.fc38.noarch.rpm: Already downloaded [SKIPPED] debugedit-5.0-5.fc37.i686.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-6.fc37.noarch.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-release-38-0.6.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-38-0.6.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-38-0.6.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-38-0.3.noarch.rpm: Already downloaded [SKIPPED] filesystem-3.18-2.fc37.i686.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-10.fc38.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-6.fc37.noarch.rpm: Already downloaded [SKIPPED] gdb-minimal-12.1-10.fc38.i686.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.5.0-7.fc37.noarch.rpm: Already downloaded [SKIPPED] glibc-2.36.9000-19.fc38.i686.rpm: Already downloaded [SKIPPED] glibc-common-2.36.9000-19.fc38.i686.rpm: Already downloaded [SKIPPED] glibc-gconv-extra-2.36.9000-19.fc38.i686.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.36.9000-19.fc38.i686.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-4-16.fc37.noarch.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.2.0-1.fc38.noarch.rpm: Already downloaded [SKIPPED] info-7.0.1-1.fc38.i686.rpm: Already downloaded [SKIPPED] jansson-2.13.1-5.fc37.i686.rpm: Already downloaded [SKIPPED] kernel-srpm-macros-1.0-15.fc37.noarch.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6.1-5.fc37.i686.rpm: Already downloaded [SKIPPED] krb5-libs-1.20.1-3.fc38.i686.rpm: Already downloaded [SKIPPED] libarchive-3.6.1-3.fc38.i686.rpm: Already downloaded [SKIPPED] libblkid-2.38.1-3.fc38.i686.rpm: Already downloaded [SKIPPED] libcap-2.48-5.fc37.i686.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.3-4.fc38.i686.rpm: Already downloaded [SKIPPED] libcom_err-1.46.5-3.fc37.i686.rpm: Already downloaded [SKIPPED] libdb-5.3.28-54.fc38.i686.rpm: Already downloaded [SKIPPED] libeconf-0.4.0-4.fc37.i686.rpm: Already downloaded [SKIPPED] libevent-2.1.12-7.fc37.i686.rpm: Already downloaded [SKIPPED] libfdisk-2.38.1-3.fc38.i686.rpm: Already downloaded [SKIPPED] libffi-3.4.4-1.fc38.i686.rpm: Already downloaded [SKIPPED] libidn2-2.3.4-1.fc38.i686.rpm: Already downloaded [SKIPPED] libmount-2.38.1-3.fc38.i686.rpm: Already downloaded [SKIPPED] libnghttp2-1.51.0-1.fc38.i686.rpm: Already downloaded [SKIPPED] libnsl2-2.0.0-4.fc37.i686.rpm: Already downloaded [SKIPPED] libpkgconf-1.8.0-3.fc37.i686.rpm: Already downloaded [SKIPPED] libpsl-0.21.1-6.fc37.i686.rpm: Already downloaded [SKIPPED] libpwquality-1.4.5-1.fc38.i686.rpm: Already downloaded [SKIPPED] libselinux-3.4-6.fc38.i686.rpm: Already downloaded [SKIPPED] libsemanage-3.4-6.fc38.i686.rpm: Already downloaded [SKIPPED] libsepol-3.4-4.fc38.i686.rpm: Already downloaded [SKIPPED] libsigsegv-2.14-3.fc37.i686.rpm: Already downloaded [SKIPPED] libsmartcols-2.38.1-3.fc38.i686.rpm: Already downloaded [SKIPPED] libssh-0.10.4-2.fc38.i686.rpm: Already downloaded [SKIPPED] libssh-config-0.10.4-2.fc38.noarch.rpm: Already downloaded [SKIPPED] libtasn1-4.19.0-1.fc38.i686.rpm: Already downloaded [SKIPPED] libtirpc-1.3.3-0.fc37.i686.rpm: Already downloaded [SKIPPED] libunistring-1.0-2.fc37.i686.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-7.fc37.i686.rpm: Already downloaded [SKIPPED] libuuid-2.38.1-3.fc38.i686.rpm: Already downloaded [SKIPPED] libverto-0.3.2-4.fc37.i686.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.33-5.fc38.i686.rpm: Already downloaded [SKIPPED] libxml2-2.10.3-2.fc38.i686.rpm: Already downloaded [SKIPPED] libzstd-1.5.2-3.fc37.i686.rpm: Already downloaded [SKIPPED] lua-libs-5.4.4-6.fc38.i686.rpm: Already downloaded [SKIPPED] lua-srpm-macros-1-7.fc37.noarch.rpm: Already downloaded [SKIPPED] lz4-libs-1.9.3-5.fc37.i686.rpm: Already downloaded [SKIPPED] mpfr-4.1.1-2.fc38.i686.rpm: Already downloaded [SKIPPED] ncurses-base-6.3-5.20221126.fc38.noarch.rpm: Already downloaded [SKIPPED] ncurses-libs-6.3-5.20221126.fc38.i686.rpm: Already downloaded [SKIPPED] nettle-3.8-2.fc37.i686.rpm: Already downloaded [SKIPPED] nim-srpm-macros-3-7.fc37.noarch.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-7-2.fc37.noarch.rpm: Already downloaded [SKIPPED] openblas-srpm-macros-2-12.fc37.noarch.rpm: Already downloaded [SKIPPED] openldap-2.6.3-1.fc38.i686.rpm: Already downloaded [SKIPPED] openssl-libs-3.0.5-6.fc38.i686.rpm: Already downloaded [SKIPPED] p11-kit-0.24.1-5.fc38.i686.rpm: Already downloaded [SKIPPED] p11-kit-trust-0.24.1-5.fc38.i686.rpm: Already downloaded [SKIPPED] package-notes-srpm-macros-0.5-6.fc38.noarch.rpm: Already downloaded [SKIPPED] pam-1.5.2-15.fc38.i686.rpm: Already downloaded [SKIPPED] pam-libs-1.5.2-15.fc38.i686.rpm: Already downloaded [SKIPPED] patch-2.7.6-17.fc37.i686.rpm: Already downloaded [SKIPPED] pcre2-10.40-1.fc37.1.i686.rpm: Already downloaded [SKIPPED] pcre2-syntax-10.40-1.fc37.1.noarch.rpm: Already downloaded [SKIPPED] perl-srpm-macros-1-47.fc38.noarch.rpm: Already downloaded [SKIPPED] pkgconf-1.8.0-3.fc37.i686.rpm: Already downloaded [SKIPPED] pkgconf-m4-1.8.0-3.fc37.noarch.rpm: Already downloaded [SKIPPED] pkgconf-pkg-config-1.8.0-3.fc37.i686.rpm: Already downloaded [SKIPPED] popt-1.19-1.fc38.i686.rpm: Already downloaded [SKIPPED] publicsuffix-list-dafsa-20221208-1.fc38.noarch.rpm: Already downloaded [SKIPPED] python-srpm-macros-3.11-6.fc38.noarch.rpm: Already downloaded [SKIPPED] qt5-srpm-macros-5.15.7-1.fc38.noarch.rpm: Already downloaded [SKIPPED] readline-8.2-2.fc38.i686.rpm: Already downloaded [SKIPPED] redhat-rpm-config-235-1.fc38.noarch.rpm: Already downloaded [SKIPPED] rpm-4.18.0-8.fc38.i686.rpm: Already downloaded [SKIPPED] rpm-build-4.18.0-8.fc38.i686.rpm: Already downloaded [SKIPPED] rpm-build-libs-4.18.0-8.fc38.i686.rpm: Already downloaded [SKIPPED] rpm-libs-4.18.0-8.fc38.i686.rpm: Already downloaded [SKIPPED] rpm-sequoia-1.2.0-1.fc38.i686.rpm: Already downloaded [SKIPPED] rpmautospec-rpm-macros-0.3.1-1.fc38.noarch.rpm: Already downloaded [SKIPPED] rust-srpm-macros-23-1.fc38.noarch.rpm: Already downloaded [SKIPPED] sed-4.8-11.fc37.i686.rpm: Already downloaded [SKIPPED] setup-2.14.3-1.fc38.noarch.rpm: Already downloaded [SKIPPED] shadow-utils-4.13-3.fc38.i686.rpm: Already downloaded [SKIPPED] sqlite-libs-3.40.0-1.fc38.i686.rpm: Already downloaded [SKIPPED] systemd-libs-252.4-598.fc38.i686.rpm: Already downloaded [SKIPPED] tar-1.34-5.fc38.i686.rpm: Already downloaded [SKIPPED] tzdata-2022g-1.fc38.noarch.rpm: Already downloaded [SKIPPED] unzip-6.0-58.fc38.i686.rpm: Already downloaded [SKIPPED] util-linux-2.38.1-3.fc38.i686.rpm: Already downloaded [SKIPPED] util-linux-core-2.38.1-3.fc38.i686.rpm: Already downloaded [SKIPPED] which-2.21-36.fc38.i686.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.1-3.fc37.i686.rpm: Already downloaded [SKIPPED] xz-5.2.9-1.fc38.i686.rpm: Already downloaded [SKIPPED] xz-libs-5.2.9-1.fc38.i686.rpm: Already downloaded [SKIPPED] zip-3.0-35.fc38.i686.rpm: Already downloaded [SKIPPED] zlib-1.2.13-1.fc38.i686.rpm: Already downloaded [SKIPPED] zstd-1.5.2-3.fc37.i686.rpm: Already downloaded Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.i686 1/1 Preparing : 1/1 Installing : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 1/153 Running scriptlet: crypto-policies-20221215-1.gita4c31a3.fc38.noarc 1/153 Installing : fedora-release-identity-basic-38-0.6.noarch 2/153 Installing : tzdata-2022g-1.fc38.noarch 3/153 Installing : rust-srpm-macros-23-1.fc38.noarch 4/153 Installing : qt5-srpm-macros-5.15.7-1.fc38.noarch 5/153 Installing : publicsuffix-list-dafsa-20221208-1.fc38.noarch 6/153 Installing : pkgconf-m4-1.8.0-3.fc37.noarch 7/153 Installing : perl-srpm-macros-1-47.fc38.noarch 8/153 Installing : pcre2-syntax-10.40-1.fc37.1.noarch 9/153 Installing : package-notes-srpm-macros-0.5-6.fc38.noarch 10/153 Installing : openblas-srpm-macros-2-12.fc37.noarch 11/153 Installing : ocaml-srpm-macros-7-2.fc37.noarch 12/153 Installing : nim-srpm-macros-3-7.fc37.noarch 13/153 Installing : ncurses-base-6.3-5.20221126.fc38.noarch 14/153 Installing : libssh-config-0.10.4-2.fc38.noarch 15/153 Installing : kernel-srpm-macros-1.0-15.fc37.noarch 16/153 Installing : gnat-srpm-macros-4-16.fc37.noarch 17/153 Installing : ghc-srpm-macros-1.5.0-7.fc37.noarch 18/153 Installing : fpc-srpm-macros-1.3-6.fc37.noarch 19/153 Installing : fedora-gpg-keys-38-0.3.noarch 20/153 Installing : fedora-release-38-0.6.noarch 21/153 Installing : fedora-release-common-38-0.6.noarch 22/153 Installing : fedora-repos-rawhide-38-0.3.noarch 23/153 Installing : fedora-repos-38-0.3.noarch 24/153 Installing : setup-2.14.3-1.fc38.noarch 25/153 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.3-1.fc38.noarch 25/153 Installing : filesystem-3.18-2.fc37.i686 26/153 Installing : basesystem-11-14.fc37.noarch 27/153 Installing : ansible-srpm-macros-1-8.1.fc38.noarch 28/153 Installing : coreutils-common-9.1-8.fc38.i686 29/153 Installing : libgcc-13.0.0-0.4.fc38.i686 30/153 Running scriptlet: libgcc-13.0.0-0.4.fc38.i686 30/153 Installing : glibc-gconv-extra-2.36.9000-19.fc38.i686 31/153 Running scriptlet: glibc-gconv-extra-2.36.9000-19.fc38.i686 31/153 Installing : ncurses-libs-6.3-5.20221126.fc38.i686 32/153 Running scriptlet: glibc-2.36.9000-19.fc38.i686 33/153 Installing : glibc-2.36.9000-19.fc38.i686 33/153 Running scriptlet: glibc-2.36.9000-19.fc38.i686 33/153 Installing : bash-5.2.9-3.fc38.i686 34/153 Running scriptlet: bash-5.2.9-3.fc38.i686 34/153 Installing : glibc-common-2.36.9000-19.fc38.i686 35/153 Installing : glibc-minimal-langpack-2.36.9000-19.fc38.i686 36/153 Installing : zlib-1.2.13-1.fc38.i686 37/153 Installing : xz-libs-5.2.9-1.fc38.i686 38/153 Installing : bzip2-libs-1.0.8-12.fc38.i686 39/153 Installing : elfutils-libelf-0.188-3.fc38.i686 40/153 Installing : gmp-1:6.2.1-3.fc38.i686 41/153 Installing : libstdc++-13.0.0-0.4.fc38.i686 42/153 Installing : libuuid-2.38.1-3.fc38.i686 43/153 Installing : libzstd-1.5.2-3.fc37.i686 44/153 Installing : popt-1.19-1.fc38.i686 45/153 Installing : libblkid-2.38.1-3.fc38.i686 46/153 Installing : libattr-2.5.1-5.fc38.i686 47/153 Installing : libacl-2.3.1-4.fc38.i686 48/153 Installing : libcap-2.48-5.fc37.i686 49/153 Installing : libxcrypt-4.4.33-5.fc38.i686 50/153 Installing : readline-8.2-2.fc38.i686 51/153 Installing : lz4-libs-1.9.3-5.fc37.i686 52/153 Installing : systemd-libs-252.4-598.fc38.i686 53/153 Installing : mpfr-4.1.1-2.fc38.i686 54/153 Installing : dwz-0.15-1.fc38.i686 55/153 Installing : unzip-6.0-58.fc38.i686 56/153 Installing : file-libs-5.42-4.fc38.i686 57/153 Installing : file-5.42-4.fc38.i686 58/153 Installing : sqlite-libs-3.40.0-1.fc38.i686 59/153 Installing : alternatives-1.21-1.fc38.i686 60/153 Installing : libcap-ng-0.8.3-4.fc38.i686 61/153 Installing : audit-libs-3.0.9-2.fc38.i686 62/153 Installing : libcom_err-1.46.5-3.fc37.i686 63/153 Installing : libeconf-0.4.0-4.fc37.i686 64/153 Installing : pam-libs-1.5.2-15.fc38.i686 65/153 Installing : libsepol-3.4-4.fc38.i686 66/153 Installing : libsmartcols-2.38.1-3.fc38.i686 67/153 Installing : libunistring-1.0-2.fc37.i686 68/153 Installing : libidn2-2.3.4-1.fc38.i686 69/153 Installing : lua-libs-5.4.4-6.fc38.i686 70/153 Installing : pcre2-10.40-1.fc37.1.i686 71/153 Installing : elfutils-default-yama-scope-0.188-3.fc38.noarch 72/153 Running scriptlet: elfutils-default-yama-scope-0.188-3.fc38.noarch 72/153 Installing : libselinux-3.4-6.fc38.i686 73/153 Installing : sed-4.8-11.fc37.i686 74/153 Installing : grep-3.8-1.fc38.i686 75/153 Installing : findutils-1:4.9.0-2.fc38.i686 76/153 Installing : xz-5.2.9-1.fc38.i686 77/153 Installing : libmount-2.38.1-3.fc38.i686 78/153 Installing : util-linux-core-2.38.1-3.fc38.i686 79/153 Installing : libsemanage-3.4-6.fc38.i686 80/153 Installing : shadow-utils-2:4.13-3.fc38.i686 81/153 Running scriptlet: libutempter-1.2.1-7.fc37.i686 82/153 Installing : libutempter-1.2.1-7.fc37.i686 82/153 Installing : tar-2:1.34-5.fc38.i686 83/153 Installing : libpsl-0.21.1-6.fc37.i686 84/153 Installing : zip-3.0-35.fc38.i686 85/153 Installing : zstd-1.5.2-3.fc37.i686 86/153 Installing : libfdisk-2.38.1-3.fc38.i686 87/153 Installing : nettle-3.8-2.fc37.i686 88/153 Installing : rpm-sequoia-1.2.0-1.fc38.i686 89/153 Installing : rpm-libs-4.18.0-8.fc38.i686 90/153 Installing : bzip2-1.0.8-12.fc38.i686 91/153 Installing : libxml2-2.10.3-2.fc38.i686 92/153 Installing : ed-1.18-2.fc38.i686 93/153 Installing : patch-2.7.6-17.fc37.i686 94/153 Installing : cpio-2.13-13.fc38.i686 95/153 Installing : diffutils-3.8-3.fc38.i686 96/153 Installing : gdbm-libs-1:1.23-2.fc38.i686 97/153 Installing : cyrus-sasl-lib-2.1.28-8.fc38.i686 98/153 Installing : libbrotli-1.0.9-9.fc38.i686 99/153 Installing : libgomp-13.0.0-0.4.fc38.i686 100/153 Installing : jansson-2.13.1-5.fc37.i686 101/153 Installing : keyutils-libs-1.6.1-5.fc37.i686 102/153 Installing : libdb-5.3.28-54.fc38.i686 103/153 Installing : libffi-3.4.4-1.fc38.i686 104/153 Installing : p11-kit-0.24.1-5.fc38.i686 105/153 Installing : libnghttp2-1.51.0-1.fc38.i686 106/153 Installing : libpkgconf-1.8.0-3.fc37.i686 107/153 Installing : pkgconf-1.8.0-3.fc37.i686 108/153 Installing : pkgconf-pkg-config-1.8.0-3.fc37.i686 109/153 Installing : libsigsegv-2.14-3.fc37.i686 110/153 Installing : gawk-5.1.1-4.fc38.i686 111/153 Installing : libtasn1-4.19.0-1.fc38.i686 112/153 Installing : p11-kit-trust-0.24.1-5.fc38.i686 113/153 Running scriptlet: p11-kit-trust-0.24.1-5.fc38.i686 113/153 Installing : openssl-libs-1:3.0.5-6.fc38.i686 114/153 Installing : coreutils-9.1-8.fc38.i686 115/153 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 116/153 Installing : ca-certificates-2022.2.54-5.fc37.noarch 116/153 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 116/153 Running scriptlet: authselect-libs-1.4.2-1.fc38.i686 117/153 Installing : authselect-libs-1.4.2-1.fc38.i686 117/153 Installing : gzip-1.12-2.fc38.i686 118/153 Installing : cracklib-2.9.7-30.fc38.i686 119/153 Installing : libpwquality-1.4.5-1.fc38.i686 120/153 Installing : authselect-1.4.2-1.fc38.i686 121/153 Installing : libarchive-3.6.1-3.fc38.i686 122/153 Installing : libevent-2.1.12-7.fc37.i686 123/153 Installing : openldap-2.6.3-1.fc38.i686 124/153 Installing : libverto-0.3.2-4.fc37.i686 125/153 Installing : krb5-libs-1.20.1-3.fc38.i686 126/153 Installing : libtirpc-1.3.3-0.fc37.i686 127/153 Installing : libnsl2-2.0.0-4.fc37.i686 128/153 Installing : pam-1.5.2-15.fc38.i686 129/153 Installing : libssh-0.10.4-2.fc38.i686 130/153 Installing : libcurl-7.87.0-1.fc38.i686 131/153 Installing : elfutils-libs-0.188-3.fc38.i686 132/153 Installing : elfutils-debuginfod-client-0.188-3.fc38.i686 133/153 Installing : binutils-gold-2.39-6.fc38.i686 134/153 Installing : binutils-2.39-6.fc38.i686 135/153 Running scriptlet: binutils-2.39-6.fc38.i686 135/153 Installing : elfutils-0.188-3.fc38.i686 136/153 Installing : rpm-build-libs-4.18.0-8.fc38.i686 137/153 Installing : curl-7.87.0-1.fc38.i686 138/153 Running scriptlet: rpm-4.18.0-8.fc38.i686 139/153 Installing : rpm-4.18.0-8.fc38.i686 139/153 Installing : efi-srpm-macros-5-6.fc37.noarch 140/153 Installing : lua-srpm-macros-1-7.fc37.noarch 141/153 Installing : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch 142/153 Installing : fonts-srpm-macros-1:2.0.5-10.fc38.noarch 143/153 Installing : go-srpm-macros-3.2.0-1.fc38.noarch 144/153 Installing : python-srpm-macros-3.11-6.fc38.noarch 145/153 Installing : redhat-rpm-config-235-1.fc38.noarch 146/153 Installing : xxhash-libs-0.8.1-3.fc37.i686 147/153 Installing : gdb-minimal-12.1-10.fc38.i686 148/153 Installing : debugedit-5.0-5.fc37.i686 149/153 Installing : rpm-build-4.18.0-8.fc38.i686 150/153 Installing : util-linux-2.38.1-3.fc38.i686 151/153 Installing : which-2.21-36.fc38.i686 152/153 Installing : info-7.0.1-1.fc38.i686 153/153 Running scriptlet: filesystem-3.18-2.fc37.i686 153/153 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 153/153 Running scriptlet: authselect-libs-1.4.2-1.fc38.i686 153/153 Running scriptlet: rpm-4.18.0-8.fc38.i686 153/153 Running scriptlet: info-7.0.1-1.fc38.i686 153/153 Verifying : alternatives-1.21-1.fc38.i686 1/153 Verifying : authselect-1.4.2-1.fc38.i686 2/153 Verifying : authselect-libs-1.4.2-1.fc38.i686 3/153 Verifying : bash-5.2.9-3.fc38.i686 4/153 Verifying : binutils-2.39-6.fc38.i686 5/153 Verifying : binutils-gold-2.39-6.fc38.i686 6/153 Verifying : bzip2-1.0.8-12.fc38.i686 7/153 Verifying : bzip2-libs-1.0.8-12.fc38.i686 8/153 Verifying : coreutils-9.1-8.fc38.i686 9/153 Verifying : coreutils-common-9.1-8.fc38.i686 10/153 Verifying : cpio-2.13-13.fc38.i686 11/153 Verifying : cracklib-2.9.7-30.fc38.i686 12/153 Verifying : curl-7.87.0-1.fc38.i686 13/153 Verifying : cyrus-sasl-lib-2.1.28-8.fc38.i686 14/153 Verifying : diffutils-3.8-3.fc38.i686 15/153 Verifying : dwz-0.15-1.fc38.i686 16/153 Verifying : ed-1.18-2.fc38.i686 17/153 Verifying : elfutils-0.188-3.fc38.i686 18/153 Verifying : elfutils-debuginfod-client-0.188-3.fc38.i686 19/153 Verifying : elfutils-default-yama-scope-0.188-3.fc38.noarch 20/153 Verifying : elfutils-libelf-0.188-3.fc38.i686 21/153 Verifying : elfutils-libs-0.188-3.fc38.i686 22/153 Verifying : file-5.42-4.fc38.i686 23/153 Verifying : file-libs-5.42-4.fc38.i686 24/153 Verifying : findutils-1:4.9.0-2.fc38.i686 25/153 Verifying : gawk-5.1.1-4.fc38.i686 26/153 Verifying : gdbm-libs-1:1.23-2.fc38.i686 27/153 Verifying : gmp-1:6.2.1-3.fc38.i686 28/153 Verifying : grep-3.8-1.fc38.i686 29/153 Verifying : gzip-1.12-2.fc38.i686 30/153 Verifying : libacl-2.3.1-4.fc38.i686 31/153 Verifying : libattr-2.5.1-5.fc38.i686 32/153 Verifying : libbrotli-1.0.9-9.fc38.i686 33/153 Verifying : libcurl-7.87.0-1.fc38.i686 34/153 Verifying : libgcc-13.0.0-0.4.fc38.i686 35/153 Verifying : libgomp-13.0.0-0.4.fc38.i686 36/153 Verifying : libstdc++-13.0.0-0.4.fc38.i686 37/153 Verifying : ansible-srpm-macros-1-8.1.fc38.noarch 38/153 Verifying : audit-libs-3.0.9-2.fc38.i686 39/153 Verifying : basesystem-11-14.fc37.noarch 40/153 Verifying : ca-certificates-2022.2.54-5.fc37.noarch 41/153 Verifying : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 42/153 Verifying : debugedit-5.0-5.fc37.i686 43/153 Verifying : efi-srpm-macros-5-6.fc37.noarch 44/153 Verifying : fedora-gpg-keys-38-0.3.noarch 45/153 Verifying : fedora-release-38-0.6.noarch 46/153 Verifying : fedora-release-common-38-0.6.noarch 47/153 Verifying : fedora-release-identity-basic-38-0.6.noarch 48/153 Verifying : fedora-repos-38-0.3.noarch 49/153 Verifying : fedora-repos-rawhide-38-0.3.noarch 50/153 Verifying : filesystem-3.18-2.fc37.i686 51/153 Verifying : fonts-srpm-macros-1:2.0.5-10.fc38.noarch 52/153 Verifying : fpc-srpm-macros-1.3-6.fc37.noarch 53/153 Verifying : gdb-minimal-12.1-10.fc38.i686 54/153 Verifying : ghc-srpm-macros-1.5.0-7.fc37.noarch 55/153 Verifying : glibc-2.36.9000-19.fc38.i686 56/153 Verifying : glibc-common-2.36.9000-19.fc38.i686 57/153 Verifying : glibc-gconv-extra-2.36.9000-19.fc38.i686 58/153 Verifying : glibc-minimal-langpack-2.36.9000-19.fc38.i686 59/153 Verifying : gnat-srpm-macros-4-16.fc37.noarch 60/153 Verifying : go-srpm-macros-3.2.0-1.fc38.noarch 61/153 Verifying : info-7.0.1-1.fc38.i686 62/153 Verifying : jansson-2.13.1-5.fc37.i686 63/153 Verifying : kernel-srpm-macros-1.0-15.fc37.noarch 64/153 Verifying : keyutils-libs-1.6.1-5.fc37.i686 65/153 Verifying : krb5-libs-1.20.1-3.fc38.i686 66/153 Verifying : libarchive-3.6.1-3.fc38.i686 67/153 Verifying : libblkid-2.38.1-3.fc38.i686 68/153 Verifying : libcap-2.48-5.fc37.i686 69/153 Verifying : libcap-ng-0.8.3-4.fc38.i686 70/153 Verifying : libcom_err-1.46.5-3.fc37.i686 71/153 Verifying : libdb-5.3.28-54.fc38.i686 72/153 Verifying : libeconf-0.4.0-4.fc37.i686 73/153 Verifying : libevent-2.1.12-7.fc37.i686 74/153 Verifying : libfdisk-2.38.1-3.fc38.i686 75/153 Verifying : libffi-3.4.4-1.fc38.i686 76/153 Verifying : libidn2-2.3.4-1.fc38.i686 77/153 Verifying : libmount-2.38.1-3.fc38.i686 78/153 Verifying : libnghttp2-1.51.0-1.fc38.i686 79/153 Verifying : libnsl2-2.0.0-4.fc37.i686 80/153 Verifying : libpkgconf-1.8.0-3.fc37.i686 81/153 Verifying : libpsl-0.21.1-6.fc37.i686 82/153 Verifying : libpwquality-1.4.5-1.fc38.i686 83/153 Verifying : libselinux-3.4-6.fc38.i686 84/153 Verifying : libsemanage-3.4-6.fc38.i686 85/153 Verifying : libsepol-3.4-4.fc38.i686 86/153 Verifying : libsigsegv-2.14-3.fc37.i686 87/153 Verifying : libsmartcols-2.38.1-3.fc38.i686 88/153 Verifying : libssh-0.10.4-2.fc38.i686 89/153 Verifying : libssh-config-0.10.4-2.fc38.noarch 90/153 Verifying : libtasn1-4.19.0-1.fc38.i686 91/153 Verifying : libtirpc-1.3.3-0.fc37.i686 92/153 Verifying : libunistring-1.0-2.fc37.i686 93/153 Verifying : libutempter-1.2.1-7.fc37.i686 94/153 Verifying : libuuid-2.38.1-3.fc38.i686 95/153 Verifying : libverto-0.3.2-4.fc37.i686 96/153 Verifying : libxcrypt-4.4.33-5.fc38.i686 97/153 Verifying : libxml2-2.10.3-2.fc38.i686 98/153 Verifying : libzstd-1.5.2-3.fc37.i686 99/153 Verifying : lua-libs-5.4.4-6.fc38.i686 100/153 Verifying : lua-srpm-macros-1-7.fc37.noarch 101/153 Verifying : lz4-libs-1.9.3-5.fc37.i686 102/153 Verifying : mpfr-4.1.1-2.fc38.i686 103/153 Verifying : ncurses-base-6.3-5.20221126.fc38.noarch 104/153 Verifying : ncurses-libs-6.3-5.20221126.fc38.i686 105/153 Verifying : nettle-3.8-2.fc37.i686 106/153 Verifying : nim-srpm-macros-3-7.fc37.noarch 107/153 Verifying : ocaml-srpm-macros-7-2.fc37.noarch 108/153 Verifying : openblas-srpm-macros-2-12.fc37.noarch 109/153 Verifying : openldap-2.6.3-1.fc38.i686 110/153 Verifying : openssl-libs-1:3.0.5-6.fc38.i686 111/153 Verifying : p11-kit-0.24.1-5.fc38.i686 112/153 Verifying : p11-kit-trust-0.24.1-5.fc38.i686 113/153 Verifying : package-notes-srpm-macros-0.5-6.fc38.noarch 114/153 Verifying : pam-1.5.2-15.fc38.i686 115/153 Verifying : pam-libs-1.5.2-15.fc38.i686 116/153 Verifying : patch-2.7.6-17.fc37.i686 117/153 Verifying : pcre2-10.40-1.fc37.1.i686 118/153 Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 119/153 Verifying : perl-srpm-macros-1-47.fc38.noarch 120/153 Verifying : pkgconf-1.8.0-3.fc37.i686 121/153 Verifying : pkgconf-m4-1.8.0-3.fc37.noarch 122/153 Verifying : pkgconf-pkg-config-1.8.0-3.fc37.i686 123/153 Verifying : popt-1.19-1.fc38.i686 124/153 Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 125/153 Verifying : python-srpm-macros-3.11-6.fc38.noarch 126/153 Verifying : qt5-srpm-macros-5.15.7-1.fc38.noarch 127/153 Verifying : readline-8.2-2.fc38.i686 128/153 Verifying : redhat-rpm-config-235-1.fc38.noarch 129/153 Verifying : rpm-4.18.0-8.fc38.i686 130/153 Verifying : rpm-build-4.18.0-8.fc38.i686 131/153 Verifying : rpm-build-libs-4.18.0-8.fc38.i686 132/153 Verifying : rpm-libs-4.18.0-8.fc38.i686 133/153 Verifying : rpm-sequoia-1.2.0-1.fc38.i686 134/153 Verifying : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch 135/153 Verifying : rust-srpm-macros-23-1.fc38.noarch 136/153 Verifying : sed-4.8-11.fc37.i686 137/153 Verifying : setup-2.14.3-1.fc38.noarch 138/153 Verifying : shadow-utils-2:4.13-3.fc38.i686 139/153 Verifying : sqlite-libs-3.40.0-1.fc38.i686 140/153 Verifying : systemd-libs-252.4-598.fc38.i686 141/153 Verifying : tar-2:1.34-5.fc38.i686 142/153 Verifying : tzdata-2022g-1.fc38.noarch 143/153 Verifying : unzip-6.0-58.fc38.i686 144/153 Verifying : util-linux-2.38.1-3.fc38.i686 145/153 Verifying : util-linux-core-2.38.1-3.fc38.i686 146/153 Verifying : which-2.21-36.fc38.i686 147/153 Verifying : xxhash-libs-0.8.1-3.fc37.i686 148/153 Verifying : xz-5.2.9-1.fc38.i686 149/153 Verifying : xz-libs-5.2.9-1.fc38.i686 150/153 Verifying : zip-3.0-35.fc38.i686 151/153 Verifying : zlib-1.2.13-1.fc38.i686 152/153 Verifying : zstd-1.5.2-3.fc37.i686 153/153 Installed: alternatives-1.21-1.fc38.i686 ansible-srpm-macros-1-8.1.fc38.noarch audit-libs-3.0.9-2.fc38.i686 authselect-1.4.2-1.fc38.i686 authselect-libs-1.4.2-1.fc38.i686 basesystem-11-14.fc37.noarch bash-5.2.9-3.fc38.i686 binutils-2.39-6.fc38.i686 binutils-gold-2.39-6.fc38.i686 bzip2-1.0.8-12.fc38.i686 bzip2-libs-1.0.8-12.fc38.i686 ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-8.fc38.i686 coreutils-common-9.1-8.fc38.i686 cpio-2.13-13.fc38.i686 cracklib-2.9.7-30.fc38.i686 crypto-policies-20221215-1.gita4c31a3.fc38.noarch curl-7.87.0-1.fc38.i686 cyrus-sasl-lib-2.1.28-8.fc38.i686 debugedit-5.0-5.fc37.i686 diffutils-3.8-3.fc38.i686 dwz-0.15-1.fc38.i686 ed-1.18-2.fc38.i686 efi-srpm-macros-5-6.fc37.noarch elfutils-0.188-3.fc38.i686 elfutils-debuginfod-client-0.188-3.fc38.i686 elfutils-default-yama-scope-0.188-3.fc38.noarch elfutils-libelf-0.188-3.fc38.i686 elfutils-libs-0.188-3.fc38.i686 fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.6.noarch fedora-release-common-38-0.6.noarch fedora-release-identity-basic-38-0.6.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-5.42-4.fc38.i686 file-libs-5.42-4.fc38.i686 filesystem-3.18-2.fc37.i686 findutils-1:4.9.0-2.fc38.i686 fonts-srpm-macros-1:2.0.5-10.fc38.noarch fpc-srpm-macros-1.3-6.fc37.noarch gawk-5.1.1-4.fc38.i686 gdb-minimal-12.1-10.fc38.i686 gdbm-libs-1:1.23-2.fc38.i686 ghc-srpm-macros-1.5.0-7.fc37.noarch glibc-2.36.9000-19.fc38.i686 glibc-common-2.36.9000-19.fc38.i686 glibc-gconv-extra-2.36.9000-19.fc38.i686 glibc-minimal-langpack-2.36.9000-19.fc38.i686 gmp-1:6.2.1-3.fc38.i686 gnat-srpm-macros-4-16.fc37.noarch go-srpm-macros-3.2.0-1.fc38.noarch grep-3.8-1.fc38.i686 gzip-1.12-2.fc38.i686 info-7.0.1-1.fc38.i686 jansson-2.13.1-5.fc37.i686 kernel-srpm-macros-1.0-15.fc37.noarch keyutils-libs-1.6.1-5.fc37.i686 krb5-libs-1.20.1-3.fc38.i686 libacl-2.3.1-4.fc38.i686 libarchive-3.6.1-3.fc38.i686 libattr-2.5.1-5.fc38.i686 libblkid-2.38.1-3.fc38.i686 libbrotli-1.0.9-9.fc38.i686 libcap-2.48-5.fc37.i686 libcap-ng-0.8.3-4.fc38.i686 libcom_err-1.46.5-3.fc37.i686 libcurl-7.87.0-1.fc38.i686 libdb-5.3.28-54.fc38.i686 libeconf-0.4.0-4.fc37.i686 libevent-2.1.12-7.fc37.i686 libfdisk-2.38.1-3.fc38.i686 libffi-3.4.4-1.fc38.i686 libgcc-13.0.0-0.4.fc38.i686 libgomp-13.0.0-0.4.fc38.i686 libidn2-2.3.4-1.fc38.i686 libmount-2.38.1-3.fc38.i686 libnghttp2-1.51.0-1.fc38.i686 libnsl2-2.0.0-4.fc37.i686 libpkgconf-1.8.0-3.fc37.i686 libpsl-0.21.1-6.fc37.i686 libpwquality-1.4.5-1.fc38.i686 libselinux-3.4-6.fc38.i686 libsemanage-3.4-6.fc38.i686 libsepol-3.4-4.fc38.i686 libsigsegv-2.14-3.fc37.i686 libsmartcols-2.38.1-3.fc38.i686 libssh-0.10.4-2.fc38.i686 libssh-config-0.10.4-2.fc38.noarch libstdc++-13.0.0-0.4.fc38.i686 libtasn1-4.19.0-1.fc38.i686 libtirpc-1.3.3-0.fc37.i686 libunistring-1.0-2.fc37.i686 libutempter-1.2.1-7.fc37.i686 libuuid-2.38.1-3.fc38.i686 libverto-0.3.2-4.fc37.i686 libxcrypt-4.4.33-5.fc38.i686 libxml2-2.10.3-2.fc38.i686 libzstd-1.5.2-3.fc37.i686 lua-libs-5.4.4-6.fc38.i686 lua-srpm-macros-1-7.fc37.noarch lz4-libs-1.9.3-5.fc37.i686 mpfr-4.1.1-2.fc38.i686 ncurses-base-6.3-5.20221126.fc38.noarch ncurses-libs-6.3-5.20221126.fc38.i686 nettle-3.8-2.fc37.i686 nim-srpm-macros-3-7.fc37.noarch ocaml-srpm-macros-7-2.fc37.noarch openblas-srpm-macros-2-12.fc37.noarch openldap-2.6.3-1.fc38.i686 openssl-libs-1:3.0.5-6.fc38.i686 p11-kit-0.24.1-5.fc38.i686 p11-kit-trust-0.24.1-5.fc38.i686 package-notes-srpm-macros-0.5-6.fc38.noarch pam-1.5.2-15.fc38.i686 pam-libs-1.5.2-15.fc38.i686 patch-2.7.6-17.fc37.i686 pcre2-10.40-1.fc37.1.i686 pcre2-syntax-10.40-1.fc37.1.noarch perl-srpm-macros-1-47.fc38.noarch pkgconf-1.8.0-3.fc37.i686 pkgconf-m4-1.8.0-3.fc37.noarch pkgconf-pkg-config-1.8.0-3.fc37.i686 popt-1.19-1.fc38.i686 publicsuffix-list-dafsa-20221208-1.fc38.noarch python-srpm-macros-3.11-6.fc38.noarch qt5-srpm-macros-5.15.7-1.fc38.noarch readline-8.2-2.fc38.i686 redhat-rpm-config-235-1.fc38.noarch rpm-4.18.0-8.fc38.i686 rpm-build-4.18.0-8.fc38.i686 rpm-build-libs-4.18.0-8.fc38.i686 rpm-libs-4.18.0-8.fc38.i686 rpm-sequoia-1.2.0-1.fc38.i686 rpmautospec-rpm-macros-0.3.1-1.fc38.noarch rust-srpm-macros-23-1.fc38.noarch sed-4.8-11.fc37.i686 setup-2.14.3-1.fc38.noarch shadow-utils-2:4.13-3.fc38.i686 sqlite-libs-3.40.0-1.fc38.i686 systemd-libs-252.4-598.fc38.i686 tar-2:1.34-5.fc38.i686 tzdata-2022g-1.fc38.noarch unzip-6.0-58.fc38.i686 util-linux-2.38.1-3.fc38.i686 util-linux-core-2.38.1-3.fc38.i686 which-2.21-36.fc38.i686 xxhash-libs-0.8.1-3.fc37.i686 xz-5.2.9-1.fc38.i686 xz-libs-5.2.9-1.fc38.i686 zip-3.0-35.fc38.i686 zlib-1.2.13-1.fc38.i686 zstd-1.5.2-3.fc37.i686 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: fpc-srpm-macros-1.3-6.fc37.noarch p11-kit-trust-0.24.1-5.fc38.i686 ncurses-base-6.3-5.20221126.fc38.noarch readline-8.2-2.fc38.i686 findutils-4.9.0-2.fc38.i686 ghc-srpm-macros-1.5.0-7.fc37.noarch glibc-gconv-extra-2.36.9000-19.fc38.i686 libsmartcols-2.38.1-3.fc38.i686 keyutils-libs-1.6.1-5.fc37.i686 libcurl-7.87.0-1.fc38.i686 which-2.21-36.fc38.i686 libffi-3.4.4-1.fc38.i686 glibc-2.36.9000-19.fc38.i686 unzip-6.0-58.fc38.i686 ed-1.18-2.fc38.i686 gmp-6.2.1-3.fc38.i686 binutils-2.39-6.fc38.i686 zstd-1.5.2-3.fc37.i686 pam-libs-1.5.2-15.fc38.i686 openldap-2.6.3-1.fc38.i686 binutils-gold-2.39-6.fc38.i686 libgomp-13.0.0-0.4.fc38.i686 openssl-libs-3.0.5-6.fc38.i686 jansson-2.13.1-5.fc37.i686 gawk-5.1.1-4.fc38.i686 glibc-minimal-langpack-2.36.9000-19.fc38.i686 file-5.42-4.fc38.i686 libarchive-3.6.1-3.fc38.i686 libuuid-2.38.1-3.fc38.i686 libcap-ng-0.8.3-4.fc38.i686 libgcc-13.0.0-0.4.fc38.i686 fonts-srpm-macros-2.0.5-10.fc38.noarch xxhash-libs-0.8.1-3.fc37.i686 diffutils-3.8-3.fc38.i686 xz-libs-5.2.9-1.fc38.i686 libcap-2.48-5.fc37.i686 libdb-5.3.28-54.fc38.i686 alternatives-1.21-1.fc38.i686 libfdisk-2.38.1-3.fc38.i686 publicsuffix-list-dafsa-20221208-1.fc38.noarch libnghttp2-1.51.0-1.fc38.i686 bash-5.2.9-3.fc38.i686 libtirpc-1.3.3-0.fc37.i686 info-7.0.1-1.fc38.i686 libnsl2-2.0.0-4.fc37.i686 gdbm-libs-1.23-2.fc38.i686 go-srpm-macros-3.2.0-1.fc38.noarch nettle-3.8-2.fc37.i686 pam-1.5.2-15.fc38.i686 fedora-gpg-keys-38-0.3.noarch authselect-1.4.2-1.fc38.i686 util-linux-2.38.1-3.fc38.i686 gdb-minimal-12.1-10.fc38.i686 ncurses-libs-6.3-5.20221126.fc38.i686 fedora-release-identity-basic-38-0.6.noarch libunistring-1.0-2.fc37.i686 redhat-rpm-config-235-1.fc38.noarch fedora-repos-38-0.3.noarch zip-3.0-35.fc38.i686 lua-srpm-macros-1-7.fc37.noarch qt5-srpm-macros-5.15.7-1.fc38.noarch lz4-libs-1.9.3-5.fc37.i686 libcom_err-1.46.5-3.fc37.i686 debugedit-5.0-5.fc37.i686 libidn2-2.3.4-1.fc38.i686 ca-certificates-2022.2.54-5.fc37.noarch dwz-0.15-1.fc38.i686 ocaml-srpm-macros-7-2.fc37.noarch rpm-libs-4.18.0-8.fc38.i686 tzdata-2022g-1.fc38.noarch libattr-2.5.1-5.fc38.i686 p11-kit-0.24.1-5.fc38.i686 elfutils-0.188-3.fc38.i686 perl-srpm-macros-1-47.fc38.noarch cyrus-sasl-lib-2.1.28-8.fc38.i686 elfutils-libs-0.188-3.fc38.i686 pkgconf-1.8.0-3.fc37.i686 sed-4.8-11.fc37.i686 glibc-common-2.36.9000-19.fc38.i686 rpm-4.18.0-8.fc38.i686 rust-srpm-macros-23-1.fc38.noarch libsepol-3.4-4.fc38.i686 pcre2-syntax-10.40-1.fc37.1.noarch basesystem-11-14.fc37.noarch bzip2-libs-1.0.8-12.fc38.i686 libutempter-1.2.1-7.fc37.i686 grep-3.8-1.fc38.i686 elfutils-debuginfod-client-0.188-3.fc38.i686 libpkgconf-1.8.0-3.fc37.i686 popt-1.19-1.fc38.i686 coreutils-common-9.1-8.fc38.i686 zlib-1.2.13-1.fc38.i686 rpm-sequoia-1.2.0-1.fc38.i686 libbrotli-1.0.9-9.fc38.i686 libmount-2.38.1-3.fc38.i686 gnat-srpm-macros-4-16.fc37.noarch libtasn1-4.19.0-1.fc38.i686 libxml2-2.10.3-2.fc38.i686 cpio-2.13-13.fc38.i686 authselect-libs-1.4.2-1.fc38.i686 python-srpm-macros-3.11-6.fc38.noarch libssh-config-0.10.4-2.fc38.noarch libxcrypt-4.4.33-5.fc38.i686 libpsl-0.21.1-6.fc37.i686 crypto-policies-20221215-1.gita4c31a3.fc38.noarch libpwquality-1.4.5-1.fc38.i686 libacl-2.3.1-4.fc38.i686 efi-srpm-macros-5-6.fc37.noarch systemd-libs-252.4-598.fc38.i686 libzstd-1.5.2-3.fc37.i686 libstdc++-13.0.0-0.4.fc38.i686 libselinux-3.4-6.fc38.i686 mpfr-4.1.1-2.fc38.i686 pkgconf-pkg-config-1.8.0-3.fc37.i686 ansible-srpm-macros-1-8.1.fc38.noarch krb5-libs-1.20.1-3.fc38.i686 rpmautospec-rpm-macros-0.3.1-1.fc38.noarch package-notes-srpm-macros-0.5-6.fc38.noarch coreutils-9.1-8.fc38.i686 libeconf-0.4.0-4.fc37.i686 kernel-srpm-macros-1.0-15.fc37.noarch fedora-repos-rawhide-38-0.3.noarch setup-2.14.3-1.fc38.noarch patch-2.7.6-17.fc37.i686 libsemanage-3.4-6.fc38.i686 sqlite-libs-3.40.0-1.fc38.i686 openblas-srpm-macros-2-12.fc37.noarch bzip2-1.0.8-12.fc38.i686 shadow-utils-4.13-3.fc38.i686 tar-1.34-5.fc38.i686 filesystem-3.18-2.fc37.i686 libverto-0.3.2-4.fc37.i686 libssh-0.10.4-2.fc38.i686 elfutils-libelf-0.188-3.fc38.i686 lua-libs-5.4.4-6.fc38.i686 libevent-2.1.12-7.fc37.i686 rpm-build-libs-4.18.0-8.fc38.i686 fedora-release-common-38-0.6.noarch elfutils-default-yama-scope-0.188-3.fc38.noarch curl-7.87.0-1.fc38.i686 rpm-build-4.18.0-8.fc38.i686 nim-srpm-macros-3-7.fc37.noarch file-libs-5.42-4.fc38.i686 util-linux-core-2.38.1-3.fc38.i686 libblkid-2.38.1-3.fc38.i686 fedora-release-38-0.6.noarch xz-5.2.9-1.fc38.i686 gzip-1.12-2.fc38.i686 cracklib-2.9.7-30.fc38.i686 pkgconf-m4-1.8.0-3.fc37.noarch audit-libs-3.0.9-2.fc38.i686 pcre2-10.40-1.fc37.1.i686 libsigsegv-2.14-3.fc37.i686 Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1660521600 Wrote: /builddir/build/SRPMS/htslib-1.15.1-1.fc38.src.rpm Finish: rpmbuild -bs cp: ‘var/lib/mock/fedora-rawhide-i686-1671965880.632776/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1671965880.632776/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-i686-1671965880.632776/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-i686-1671965880.632776/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-ttzk8bqg/htslib/htslib.spec) Config(child) 0 minutes 54 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=115200): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/htslib-1.15.1-1.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1671965880.632776 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/htslib-1.15.1-1.fc38.src.rpm) Config(fedora-rawhide-i686) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1671965880.632776/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1671965880.632776/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1671965880.632776/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 12 kB/s | 3.0 kB 00:00 Copr repository 22 MB/s | 16 MB 00:00 Additional repo https_jakub_fedorapeople_org_fe 10 kB/s | 3.0 kB 00:00 local 14 kB/s | 3.8 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for htslib-1.15.1-1.fc38.src.rpm Start: build setup for htslib-1.15.1-1.fc38.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1660521600 Wrote: /builddir/build/SRPMS/htslib-1.15.1-1.fc38.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 12 kB/s | 3.0 kB 00:00 Copr repository 22 MB/s | 16 MB 00:00 Additional repo https_jakub_fedorapeople_org_fe 10 kB/s | 3.0 kB 00:00 local 14 kB/s | 3.8 kB 00:00 Dependencies resolved. ============================================================================================================ Package Arch Version Repository Size ============================================================================================================ Installing: bzip2-devel i686 1.0.8-12.fc38 copr_base 214 k gcc i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 34 M libcurl-devel i686 7.87.0-1.fc38 copr_base 895 k make i686 1:4.3-11.fc37 local 540 k openssl-devel i686 1:3.0.5-6.fc38 local 3.0 M perl-Data-Dumper i686 2.184-490.fc37 local 58 k perl-FindBin noarch 1.53-492.fc38 local 17 k perl-Getopt-Long noarch 1:2.54-1.fc38 local 60 k perl-interpreter i686 4:5.36.0-492.fc38 local 75 k perl-lib i686 0.65-492.fc38 local 18 k xz-devel i686 5.2.9-1.fc38 local 53 k zlib-devel i686 1.2.13-1.fc38 local 45 k Installing dependencies: annobin-docs noarch 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 93 k annobin-plugin-gcc i686 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 889 k cpp i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 11 M gc i686 8.2.2-1.fc38 copr_base 113 k gcc-plugin-annobin i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 30 k glibc-devel i686 2.36.9000-19.fc38 local 43 k glibc-headers-x86 noarch 2.36.9000-19.fc38 local 450 k groff-base i686 1.22.4-10.fc38 copr_base 1.0 M guile22 i686 2.2.7-6.fc38 copr_base 6.5 M kernel-headers i686 6.1.0-1.fc38 local 1.4 M libasan i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 491 k libatomic i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 17 k libmpc i686 1.2.1-5.fc37 local 65 k libtool-ltdl i686 2.4.7-3.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 39 k libubsan i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 219 k libxcrypt-devel i686 4.4.33-5.fc38 local 30 k ncurses i686 6.3-5.20221126.fc38 local 409 k perl-B i686 1.83-492.fc38 local 189 k perl-Carp noarch 1.52-489.fc37 local 29 k perl-Class-Struct noarch 0.66-492.fc38 local 25 k perl-DynaLoader i686 1.52-492.fc38 local 29 k perl-Encode i686 4:3.19-492.fc38 local 1.2 M perl-Errno i686 1.36-492.fc38 local 18 k perl-Exporter noarch 5.77-489.fc37 local 31 k perl-Fcntl i686 1.15-492.fc38 local 24 k perl-File-Basename noarch 2.85-492.fc38 local 20 k perl-File-Path noarch 2.18-489.fc37 local 35 k perl-File-Temp noarch 1:0.231.100-489.fc37 local 59 k perl-File-stat noarch 1.12-492.fc38 local 20 k perl-Getopt-Std noarch 1.13-492.fc38 local 19 k perl-HTTP-Tiny noarch 0.082-1.fc37 local 55 k perl-IO i686 1.50-492.fc38 local 91 k perl-IPC-Open3 noarch 1.22-492.fc38 local 26 k perl-MIME-Base64 i686 3.16-489.fc37 local 31 k perl-POSIX i686 2.03-492.fc38 local 104 k perl-PathTools i686 3.84-489.fc37 local 85 k perl-Pod-Escapes noarch 1:1.07-489.fc37 local 20 k perl-Pod-Perldoc noarch 3.28.01-490.fc37 local 84 k perl-Pod-Simple noarch 1:3.43-490.fc37 local 215 k perl-Pod-Usage noarch 4:2.03-3.fc37 local 40 k perl-Scalar-List-Utils i686 5:1.63-489.fc38 local 76 k perl-SelectSaver noarch 1.02-492.fc38 local 15 k perl-Socket i686 4:2.036-1.fc38 local 56 k perl-Storable i686 1:3.26-489.fc37 local 99 k perl-Symbol noarch 1.09-492.fc38 local 17 k perl-Term-ANSIColor noarch 5.01-490.fc37 local 48 k perl-Term-Cap noarch 1.17-489.fc37 local 22 k perl-Text-ParseWords noarch 3.31-489.fc37 local 16 k perl-Text-Tabs+Wrap noarch 2021.0814-489.fc37 local 22 k perl-Time-Local noarch 2:1.300-489.fc37 local 33 k perl-constant noarch 1.33-490.fc37 local 23 k perl-if noarch 0.61.000-492.fc38 local 17 k perl-libs i686 4:5.36.0-492.fc38 local 2.2 M perl-mro i686 1.26-492.fc38 local 32 k perl-overload noarch 1.35-492.fc38 local 49 k perl-overloading noarch 0.02-492.fc38 local 16 k perl-parent noarch 1:0.239-1.fc38 local 14 k perl-podlators noarch 1:5.00-1.fc38 local 122 k perl-vars noarch 1.05-492.fc38 local 16 k Transaction Summary ============================================================================================================ Install 71 Packages Total size: 67 M Total download size: 4.2 M Installed size: 204 M Downloading Packages: [SKIPPED] gc-8.2.2-1.fc38.i686.rpm: Already downloaded [SKIPPED] groff-base-1.22.4-10.fc38.i686.rpm: Already downloaded [SKIPPED] guile22-2.2.7-6.fc38.i686.rpm: Already downloaded [SKIPPED] annobin-docs-10.99-1.0.1.fc38.noarch.rpm: Already downloaded [SKIPPED] annobin-plugin-gcc-10.99-1.0.1.fc38.i686.rpm: Already downloaded [SKIPPED] cpp-13.0.0-0.4.fc38.i686.rpm: Already downloaded [SKIPPED] gcc-13.0.0-0.4.fc38.i686.rpm: Already downloaded [SKIPPED] gcc-plugin-annobin-13.0.0-0.4.fc38.i686.rpm: Already downloaded [SKIPPED] libasan-13.0.0-0.4.fc38.i686.rpm: Already downloaded [SKIPPED] libatomic-13.0.0-0.4.fc38.i686.rpm: Already downloaded [SKIPPED] libtool-ltdl-2.4.7-3.0.1.fc38.i686.rpm: Already downloaded [SKIPPED] libubsan-13.0.0-0.4.fc38.i686.rpm: Already downloaded [SKIPPED] glibc-devel-2.36.9000-19.fc38.i686.rpm: Already downloaded [SKIPPED] glibc-headers-x86-2.36.9000-19.fc38.noarch.rpm: Already downloaded [SKIPPED] kernel-headers-6.1.0-1.fc38.i686.rpm: Already downloaded [SKIPPED] libmpc-1.2.1-5.fc37.i686.rpm: Already downloaded [SKIPPED] libxcrypt-devel-4.4.33-5.fc38.i686.rpm: Already downloaded [SKIPPED] make-4.3-11.fc37.i686.rpm: Already downloaded [SKIPPED] ncurses-6.3-5.20221126.fc38.i686.rpm: Already downloaded [SKIPPED] perl-B-1.83-492.fc38.i686.rpm: Already downloaded [SKIPPED] perl-Carp-1.52-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Class-Struct-0.66-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Data-Dumper-2.184-490.fc37.i686.rpm: Already downloaded [SKIPPED] perl-DynaLoader-1.52-492.fc38.i686.rpm: Already downloaded [SKIPPED] perl-Encode-3.19-492.fc38.i686.rpm: Already downloaded [SKIPPED] perl-Errno-1.36-492.fc38.i686.rpm: Already downloaded [SKIPPED] perl-Exporter-5.77-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Fcntl-1.15-492.fc38.i686.rpm: Already downloaded [SKIPPED] perl-File-Basename-2.85-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-File-Path-2.18-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-File-Temp-0.231.100-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-File-stat-1.12-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Getopt-Long-2.54-1.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Getopt-Std-1.13-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-HTTP-Tiny-0.082-1.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-IO-1.50-492.fc38.i686.rpm: Already downloaded [SKIPPED] perl-IPC-Open3-1.22-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-MIME-Base64-3.16-489.fc37.i686.rpm: Already downloaded [SKIPPED] perl-POSIX-2.03-492.fc38.i686.rpm: Already downloaded [SKIPPED] perl-PathTools-3.84-489.fc37.i686.rpm: Already downloaded [SKIPPED] perl-Pod-Escapes-1.07-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Perldoc-3.28.01-490.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Simple-3.43-490.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Usage-2.03-3.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Scalar-List-Utils-1.63-489.fc38.i686.rpm: Already downloaded [SKIPPED] perl-SelectSaver-1.02-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Socket-2.036-1.fc38.i686.rpm: Already downloaded [SKIPPED] perl-Storable-3.26-489.fc37.i686.rpm: Already downloaded [SKIPPED] perl-Symbol-1.09-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Term-ANSIColor-5.01-490.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Term-Cap-1.17-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Text-ParseWords-3.31-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Time-Local-1.300-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-constant-1.33-490.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-if-0.61.000-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-interpreter-5.36.0-492.fc38.i686.rpm: Already downloaded [SKIPPED] perl-libs-5.36.0-492.fc38.i686.rpm: Already downloaded [SKIPPED] perl-mro-1.26-492.fc38.i686.rpm: Already downloaded [SKIPPED] perl-overload-1.35-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-overloading-0.02-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-parent-0.239-1.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-podlators-5.00-1.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-vars-1.05-492.fc38.noarch.rpm: Already downloaded (65/71): bzip2-devel-1.0.8-12.fc38.i686.rpm 708 kB/s | 214 kB 00:00 (66/71): libcurl-devel-7.87.0-1.fc38.i686.rpm 2.4 MB/s | 895 kB 00:00 (67/71): perl-FindBin-1.53-492.fc38.noarch.rpm 283 kB/s | 17 kB 00:00 (68/71): openssl-devel-3.0.5-6.fc38.i686.rpm 7.9 MB/s | 3.0 MB 00:00 (69/71): zlib-devel-1.2.13-1.fc38.i686.rpm 3.4 MB/s | 45 kB 00:00 (70/71): xz-devel-5.2.9-1.fc38.i686.rpm 2.2 MB/s | 53 kB 00:00 (71/71): perl-lib-0.65-492.fc38.i686.rpm 341 kB/s | 18 kB 00:00 -------------------------------------------------------------------------------- Total 8.6 MB/s | 4.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : kernel-headers-6.1.0-1.fc38.i686 1/71 Installing : glibc-headers-x86-2.36.9000-19.fc38.noarch 2/71 Installing : libxcrypt-devel-4.4.33-5.fc38.i686 3/71 Installing : glibc-devel-2.36.9000-19.fc38.i686 4/71 Installing : annobin-docs-10.99-1.0.1.fc38.noarch 5/71 Installing : zlib-devel-1.2.13-1.fc38.i686 6/71 Installing : xz-devel-5.2.9-1.fc38.i686 7/71 Installing : openssl-devel-1:3.0.5-6.fc38.i686 8/71 Installing : libcurl-devel-7.87.0-1.fc38.i686 9/71 Installing : bzip2-devel-1.0.8-12.fc38.i686 10/71 Installing : libmpc-1.2.1-5.fc37.i686 11/71 Installing : cpp-13.0.0-0.4.fc38.i686 12/71 Installing : ncurses-6.3-5.20221126.fc38.i686 13/71 Installing : libubsan-13.0.0-0.4.fc38.i686 14/71 Installing : libtool-ltdl-2.4.7-3.0.1.fc38.i686 15/71 Installing : libatomic-13.0.0-0.4.fc38.i686 16/71 Installing : libasan-13.0.0-0.4.fc38.i686 17/71 Running scriptlet: groff-base-1.22.4-10.fc38.i686 18/71 Installing : groff-base-1.22.4-10.fc38.i686 18/71 Running scriptlet: groff-base-1.22.4-10.fc38.i686 18/71 Installing : perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch 19/71 Installing : perl-if-0.61.000-492.fc38.noarch 20/71 Installing : perl-Time-Local-2:1.300-489.fc37.noarch 21/71 Installing : perl-File-Path-2.18-489.fc37.noarch 22/71 Installing : perl-Pod-Escapes-1:1.07-489.fc37.noarch 23/71 Installing : perl-Class-Struct-0.66-492.fc38.noarch 24/71 Installing : perl-POSIX-2.03-492.fc38.i686 25/71 Installing : perl-Term-ANSIColor-5.01-490.fc37.noarch 26/71 Installing : perl-IPC-Open3-1.22-492.fc38.noarch 27/71 Installing : perl-HTTP-Tiny-0.082-1.fc37.noarch 28/71 Installing : perl-File-Temp-1:0.231.100-489.fc37.noarch 29/71 Installing : perl-Term-Cap-1.17-489.fc37.noarch 30/71 Installing : perl-Pod-Simple-1:3.43-490.fc37.noarch 31/71 Installing : perl-Socket-4:2.036-1.fc38.i686 32/71 Installing : perl-SelectSaver-1.02-492.fc38.noarch 33/71 Installing : perl-Symbol-1.09-492.fc38.noarch 34/71 Installing : perl-File-stat-1.12-492.fc38.noarch 35/71 Installing : perl-podlators-1:5.00-1.fc38.noarch 36/71 Installing : perl-Pod-Perldoc-3.28.01-490.fc37.noarch 37/71 Installing : perl-Fcntl-1.15-492.fc38.i686 38/71 Installing : perl-Text-ParseWords-3.31-489.fc37.noarch 39/71 Installing : perl-mro-1.26-492.fc38.i686 40/71 Installing : perl-IO-1.50-492.fc38.i686 41/71 Installing : perl-overloading-0.02-492.fc38.noarch 42/71 Installing : perl-Pod-Usage-4:2.03-3.fc37.noarch 43/71 Installing : perl-Errno-1.36-492.fc38.i686 44/71 Installing : perl-File-Basename-2.85-492.fc38.noarch 45/71 Installing : perl-Getopt-Std-1.13-492.fc38.noarch 46/71 Installing : perl-MIME-Base64-3.16-489.fc37.i686 47/71 Installing : perl-Scalar-List-Utils-5:1.63-489.fc38.i686 48/71 Installing : perl-constant-1.33-490.fc37.noarch 49/71 Installing : perl-Storable-1:3.26-489.fc37.i686 50/71 Installing : perl-overload-1.35-492.fc38.noarch 51/71 Installing : perl-parent-1:0.239-1.fc38.noarch 52/71 Installing : perl-vars-1.05-492.fc38.noarch 53/71 Installing : perl-Getopt-Long-1:2.54-1.fc38.noarch 54/71 Installing : perl-Carp-1.52-489.fc37.noarch 55/71 Installing : perl-Exporter-5.77-489.fc37.noarch 56/71 Installing : perl-PathTools-3.84-489.fc37.i686 57/71 Installing : perl-DynaLoader-1.52-492.fc38.i686 58/71 Installing : perl-Encode-4:3.19-492.fc38.i686 59/71 Installing : perl-libs-4:5.36.0-492.fc38.i686 60/71 Installing : perl-interpreter-4:5.36.0-492.fc38.i686 61/71 Installing : perl-Data-Dumper-2.184-490.fc37.i686 62/71 Installing : perl-B-1.83-492.fc38.i686 63/71 Installing : gc-8.2.2-1.fc38.i686 64/71 Installing : perl-FindBin-1.53-492.fc38.noarch 65/71 Installing : perl-lib-0.65-492.fc38.i686 66/71 Installing : guile22-2.2.7-6.fc38.i686 67/71 Installing : make-1:4.3-11.fc37.i686 68/71 Installing : gcc-13.0.0-0.4.fc38.i686 69/71 Running scriptlet: gcc-13.0.0-0.4.fc38.i686 69/71 Installing : annobin-plugin-gcc-10.99-1.0.1.fc38.i686 70/71 Running scriptlet: annobin-plugin-gcc-10.99-1.0.1.fc38.i686 70/71 Installing : gcc-plugin-annobin-13.0.0-0.4.fc38.i686 71/71 Running scriptlet: gcc-plugin-annobin-13.0.0-0.4.fc38.i686 71/71 Verifying : bzip2-devel-1.0.8-12.fc38.i686 1/71 Verifying : gc-8.2.2-1.fc38.i686 2/71 Verifying : groff-base-1.22.4-10.fc38.i686 3/71 Verifying : guile22-2.2.7-6.fc38.i686 4/71 Verifying : libcurl-devel-7.87.0-1.fc38.i686 5/71 Verifying : annobin-docs-10.99-1.0.1.fc38.noarch 6/71 Verifying : annobin-plugin-gcc-10.99-1.0.1.fc38.i686 7/71 Verifying : cpp-13.0.0-0.4.fc38.i686 8/71 Verifying : gcc-13.0.0-0.4.fc38.i686 9/71 Verifying : gcc-plugin-annobin-13.0.0-0.4.fc38.i686 10/71 Verifying : libasan-13.0.0-0.4.fc38.i686 11/71 Verifying : libatomic-13.0.0-0.4.fc38.i686 12/71 Verifying : libtool-ltdl-2.4.7-3.0.1.fc38.i686 13/71 Verifying : libubsan-13.0.0-0.4.fc38.i686 14/71 Verifying : glibc-devel-2.36.9000-19.fc38.i686 15/71 Verifying : glibc-headers-x86-2.36.9000-19.fc38.noarch 16/71 Verifying : kernel-headers-6.1.0-1.fc38.i686 17/71 Verifying : libmpc-1.2.1-5.fc37.i686 18/71 Verifying : libxcrypt-devel-4.4.33-5.fc38.i686 19/71 Verifying : make-1:4.3-11.fc37.i686 20/71 Verifying : ncurses-6.3-5.20221126.fc38.i686 21/71 Verifying : openssl-devel-1:3.0.5-6.fc38.i686 22/71 Verifying : perl-B-1.83-492.fc38.i686 23/71 Verifying : perl-Carp-1.52-489.fc37.noarch 24/71 Verifying : perl-Class-Struct-0.66-492.fc38.noarch 25/71 Verifying : perl-Data-Dumper-2.184-490.fc37.i686 26/71 Verifying : perl-DynaLoader-1.52-492.fc38.i686 27/71 Verifying : perl-Encode-4:3.19-492.fc38.i686 28/71 Verifying : perl-Errno-1.36-492.fc38.i686 29/71 Verifying : perl-Exporter-5.77-489.fc37.noarch 30/71 Verifying : perl-Fcntl-1.15-492.fc38.i686 31/71 Verifying : perl-File-Basename-2.85-492.fc38.noarch 32/71 Verifying : perl-File-Path-2.18-489.fc37.noarch 33/71 Verifying : perl-File-Temp-1:0.231.100-489.fc37.noarch 34/71 Verifying : perl-File-stat-1.12-492.fc38.noarch 35/71 Verifying : perl-FindBin-1.53-492.fc38.noarch 36/71 Verifying : perl-Getopt-Long-1:2.54-1.fc38.noarch 37/71 Verifying : perl-Getopt-Std-1.13-492.fc38.noarch 38/71 Verifying : perl-HTTP-Tiny-0.082-1.fc37.noarch 39/71 Verifying : perl-IO-1.50-492.fc38.i686 40/71 Verifying : perl-IPC-Open3-1.22-492.fc38.noarch 41/71 Verifying : perl-MIME-Base64-3.16-489.fc37.i686 42/71 Verifying : perl-POSIX-2.03-492.fc38.i686 43/71 Verifying : perl-PathTools-3.84-489.fc37.i686 44/71 Verifying : perl-Pod-Escapes-1:1.07-489.fc37.noarch 45/71 Verifying : perl-Pod-Perldoc-3.28.01-490.fc37.noarch 46/71 Verifying : perl-Pod-Simple-1:3.43-490.fc37.noarch 47/71 Verifying : perl-Pod-Usage-4:2.03-3.fc37.noarch 48/71 Verifying : perl-Scalar-List-Utils-5:1.63-489.fc38.i686 49/71 Verifying : perl-SelectSaver-1.02-492.fc38.noarch 50/71 Verifying : perl-Socket-4:2.036-1.fc38.i686 51/71 Verifying : perl-Storable-1:3.26-489.fc37.i686 52/71 Verifying : perl-Symbol-1.09-492.fc38.noarch 53/71 Verifying : perl-Term-ANSIColor-5.01-490.fc37.noarch 54/71 Verifying : perl-Term-Cap-1.17-489.fc37.noarch 55/71 Verifying : perl-Text-ParseWords-3.31-489.fc37.noarch 56/71 Verifying : perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch 57/71 Verifying : perl-Time-Local-2:1.300-489.fc37.noarch 58/71 Verifying : perl-constant-1.33-490.fc37.noarch 59/71 Verifying : perl-if-0.61.000-492.fc38.noarch 60/71 Verifying : perl-interpreter-4:5.36.0-492.fc38.i686 61/71 Verifying : perl-lib-0.65-492.fc38.i686 62/71 Verifying : perl-libs-4:5.36.0-492.fc38.i686 63/71 Verifying : perl-mro-1.26-492.fc38.i686 64/71 Verifying : perl-overload-1.35-492.fc38.noarch 65/71 Verifying : perl-overloading-0.02-492.fc38.noarch 66/71 Verifying : perl-parent-1:0.239-1.fc38.noarch 67/71 Verifying : perl-podlators-1:5.00-1.fc38.noarch 68/71 Verifying : perl-vars-1.05-492.fc38.noarch 69/71 Verifying : xz-devel-5.2.9-1.fc38.i686 70/71 Verifying : zlib-devel-1.2.13-1.fc38.i686 71/71 Installed: annobin-docs-10.99-1.0.1.fc38.noarch annobin-plugin-gcc-10.99-1.0.1.fc38.i686 bzip2-devel-1.0.8-12.fc38.i686 cpp-13.0.0-0.4.fc38.i686 gc-8.2.2-1.fc38.i686 gcc-13.0.0-0.4.fc38.i686 gcc-plugin-annobin-13.0.0-0.4.fc38.i686 glibc-devel-2.36.9000-19.fc38.i686 glibc-headers-x86-2.36.9000-19.fc38.noarch groff-base-1.22.4-10.fc38.i686 guile22-2.2.7-6.fc38.i686 kernel-headers-6.1.0-1.fc38.i686 libasan-13.0.0-0.4.fc38.i686 libatomic-13.0.0-0.4.fc38.i686 libcurl-devel-7.87.0-1.fc38.i686 libmpc-1.2.1-5.fc37.i686 libtool-ltdl-2.4.7-3.0.1.fc38.i686 libubsan-13.0.0-0.4.fc38.i686 libxcrypt-devel-4.4.33-5.fc38.i686 make-1:4.3-11.fc37.i686 ncurses-6.3-5.20221126.fc38.i686 openssl-devel-1:3.0.5-6.fc38.i686 perl-B-1.83-492.fc38.i686 perl-Carp-1.52-489.fc37.noarch perl-Class-Struct-0.66-492.fc38.noarch perl-Data-Dumper-2.184-490.fc37.i686 perl-DynaLoader-1.52-492.fc38.i686 perl-Encode-4:3.19-492.fc38.i686 perl-Errno-1.36-492.fc38.i686 perl-Exporter-5.77-489.fc37.noarch perl-Fcntl-1.15-492.fc38.i686 perl-File-Basename-2.85-492.fc38.noarch perl-File-Path-2.18-489.fc37.noarch perl-File-Temp-1:0.231.100-489.fc37.noarch perl-File-stat-1.12-492.fc38.noarch perl-FindBin-1.53-492.fc38.noarch perl-Getopt-Long-1:2.54-1.fc38.noarch perl-Getopt-Std-1.13-492.fc38.noarch perl-HTTP-Tiny-0.082-1.fc37.noarch perl-IO-1.50-492.fc38.i686 perl-IPC-Open3-1.22-492.fc38.noarch perl-MIME-Base64-3.16-489.fc37.i686 perl-POSIX-2.03-492.fc38.i686 perl-PathTools-3.84-489.fc37.i686 perl-Pod-Escapes-1:1.07-489.fc37.noarch perl-Pod-Perldoc-3.28.01-490.fc37.noarch perl-Pod-Simple-1:3.43-490.fc37.noarch perl-Pod-Usage-4:2.03-3.fc37.noarch perl-Scalar-List-Utils-5:1.63-489.fc38.i686 perl-SelectSaver-1.02-492.fc38.noarch perl-Socket-4:2.036-1.fc38.i686 perl-Storable-1:3.26-489.fc37.i686 perl-Symbol-1.09-492.fc38.noarch perl-Term-ANSIColor-5.01-490.fc37.noarch perl-Term-Cap-1.17-489.fc37.noarch perl-Text-ParseWords-3.31-489.fc37.noarch perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch perl-Time-Local-2:1.300-489.fc37.noarch perl-constant-1.33-490.fc37.noarch perl-if-0.61.000-492.fc38.noarch perl-interpreter-4:5.36.0-492.fc38.i686 perl-lib-0.65-492.fc38.i686 perl-libs-4:5.36.0-492.fc38.i686 perl-mro-1.26-492.fc38.i686 perl-overload-1.35-492.fc38.noarch perl-overloading-0.02-492.fc38.noarch perl-parent-1:0.239-1.fc38.noarch perl-podlators-1:5.00-1.fc38.noarch perl-vars-1.05-492.fc38.noarch xz-devel-5.2.9-1.fc38.i686 zlib-devel-1.2.13-1.fc38.i686 Complete! Finish: build setup for htslib-1.15.1-1.fc38.src.rpm Start: rpmbuild htslib-1.15.1-1.fc38.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1660521600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.rKpZzD + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf htslib-1.15.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/htslib-1.15.1.tar.bz2 + STATUS=0 + '[' 0 -ne 0 ']' + cd htslib-1.15.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (htslib-1.15.1-gcc12.patch):' Patch #0 (htslib-1.15.1-gcc12.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 patching file htscodecs/htscodecs/rANS_word.h + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.hYkUuw + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd htslib-1.15.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2022-04-07 15:42:52.000000000 +0000 +++ ./configure 2022-12-25 10:59:21.010360555 +0000 @@ -1697,7 +1697,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh ++ grep -q runstatedir=DIR ./configure ++ echo --runstatedir=/run + ./configure --build=i686-redhat-linux-gnu --host=i686-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' --prefix=/usr --libdir=/usr/lib --enable-plugins '--with-plugin-path=/usr/local/libexec/htslib:$(plugindir)' --enable-gcs --enable-libcurl --enable-s3 configure: WARNING: unrecognized options: --disable-dependency-tracking checking for i686-redhat-linux-gnu-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for i686-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for i686-redhat-linux-gnu-pkg-config... /usr/bin/i686-redhat-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking shared library type for i686-redhat-linux-gnu... plain .so checking whether the compiler accepts -fvisibility=hidden... yes checking how to run the C preprocessor... gcc -E checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing dlsym... none required checking whether the compiler accepts -rdynamic... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for curl/curl.h... yes checking for curl_easy_pause in -lcurl... yes checking for CCHmac... no checking for library containing HMAC... -lcrypto checking for library containing regcomp... none required checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: linking htscodecs_bundled.mk to htscodecs.mk configure: WARNING: unrecognized options: --disable-dependency-tracking + /usr/bin/make -O -j2 V=1 VERBOSE=1 gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o kfunc.o kfunc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o kstring.o kstring.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o bcf_sr_sort.o bcf_sr_sort.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o errmod.o errmod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o bgzf.o bgzf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o faidx.o faidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o hfile.o hfile.c echo '#define HTS_VERSION_TEXT "1.15.1"' > version.h echo '#define HTS_CC "gcc"' > config_vars.h echo '#define HTS_CPPFLAGS ""' >> config_vars.h echo '#define HTS_CFLAGS "-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden"' >> config_vars.h echo '#define HTS_LDFLAGS "-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic"' >> config_vars.h echo '#define HTS_LIBS "-llzma -lbz2 -lz -lm "' >> config_vars.h gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o hts_expr.o hts_expr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o hts_os.o hts_os.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o header.o header.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o md5.o md5.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o multipart.o multipart.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o probaln.o probaln.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o realn.o realn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o region.o region.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o regidx.o regidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o synced_bcf_reader.o synced_bcf_reader.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o vcf_sweep.o vcf_sweep.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o tbx.o tbx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o textutils.o textutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o thread_pool.o thread_pool.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o sam.o sam.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o vcfutils.o vcfutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o vcf.o vcf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o cram/cram_codecs.o cram/cram_codecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o cram/cram_decode.o cram/cram_decode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o cram/cram_external.o cram/cram_external.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o cram/cram_index.o cram/cram_index.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o cram/cram_encode.o cram/cram_encode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o cram/cram_stats.o cram/cram_stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o cram/mFILE.o cram/mFILE.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o cram/open_trace_file.o cram/open_trace_file.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o cram/pooled_alloc.o cram/pooled_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o cram/string_alloc.o cram/string_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o cram/cram_io.o cram/cram_io.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rANS_static.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o htscodecs/htscodecs/rle.o htscodecs/htscodecs/rle.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/tokenise_name3.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -DPLUGINPATH=\"/usr/local/libexec/htslib:/usr/libexec/htslib\" -c -o plugin.o plugin.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o kfunc.pico kfunc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o kstring.pico kstring.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o bcf_sr_sort.pico bcf_sr_sort.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o errmod.pico errmod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o bgzf.pico bgzf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o faidx.pico faidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o hfile.pico hfile.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o header.pico header.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o hts_expr.pico hts_expr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o hts_os.pico hts_os.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o md5.pico md5.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o multipart.pico multipart.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o probaln.pico probaln.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o realn.pico realn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o regidx.pico regidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o region.pico region.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o hts.pico hts.c hts.c: In function 'hts_hopen': hts.c:1355:31: warning: '%s' directive output between 503 and 2147483645 bytes may cause result to exceed 'INT_MAX' [-Wformat-truncation=] 1355 | snprintf(fn2, fn2_len, "%s%s", prefix, fn); | ^~ In file included from /usr/include/stdio.h:906, from hts.c:30: In function 'snprintf', inlined from 'hts_crypt4gh_redirect' at hts.c:1355:5, inlined from 'hts_hopen' at hts.c:1414:21: /usr/include/bits/stdio2.h:54:10: note: '__snprintf_chk' output between 513 and 2147483655 bytes into a destination of size 2147483655 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o synced_bcf_reader.pico synced_bcf_reader.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o vcf_sweep.pico vcf_sweep.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o tbx.pico tbx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o textutils.pico textutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o thread_pool.pico thread_pool.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o sam.pico sam.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o vcfutils.pico vcfutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o vcf.pico vcf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o cram/cram_codecs.pico cram/cram_codecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o cram/cram_decode.pico cram/cram_decode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o cram/cram_external.pico cram/cram_external.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o cram/cram_index.pico cram/cram_index.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o cram/cram_encode.pico cram/cram_encode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o cram/cram_stats.pico cram/cram_stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o cram/mFILE.pico cram/mFILE.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o cram/open_trace_file.pico cram/open_trace_file.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o cram/pooled_alloc.pico cram/pooled_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o cram/string_alloc.pico cram/string_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o htscodecs/htscodecs/arith_dynamic.pico htscodecs/htscodecs/arith_dynamic.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o cram/cram_io.pico cram/cram_io.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o htscodecs/htscodecs/htscodecs.pico htscodecs/htscodecs/htscodecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o htscodecs/htscodecs/pack.pico htscodecs/htscodecs/pack.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o htscodecs/htscodecs/fqzcomp_qual.pico htscodecs/htscodecs/fqzcomp_qual.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o htscodecs/htscodecs/rANS_static.pico htscodecs/htscodecs/rANS_static.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o htscodecs/htscodecs/rle.pico htscodecs/htscodecs/rle.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o htscodecs/htscodecs/rANS_static4x16pr.pico htscodecs/htscodecs/rANS_static4x16pr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -DPLUGINPATH=\"/usr/local/libexec/htslib:/usr/libexec/htslib\" -fpic -c -o plugin.pico plugin.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o htscodecs/htscodecs/tokenise_name3.pico htscodecs/htscodecs/tokenise_name3.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o bgzip.o bgzip.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o htsfile.o htsfile.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o tabix.o tabix.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o hfile_gcs.pico hfile_gcs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o hfile_libcurl.pico hfile_libcurl.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o hfile_s3_write.pico hfile_s3_write.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -fpic -c -o hfile_s3.pico hfile_s3.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/fieldarith.o test/fieldarith.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/hts_endian.o test/hts_endian.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/hfile.o test/hfile.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/pileup.o test/pileup.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/pileup_mod.o test/pileup_mod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/plugins-dlhts.o test/plugins-dlhts.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/test_bgzf.o test/test_bgzf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/test_expr.o test/test_expr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/test_kfunc.o test/test_kfunc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/test_kstring.o test/test_kstring.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/test_mod.o test/test_mod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/sam.o test/sam.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/test_realn.o test/test_realn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/test-regidx.o test/test-regidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/test_str2int.o test/test_str2int.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/test_index.o test/test_index.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/test_view.o test/test_view.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/test-vcf-api.o test/test-vcf-api.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/test-bcf-sr.o test/test-bcf-sr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/fuzz/hts_open_fuzzer.o test/fuzz/hts_open_fuzzer.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/test-bcf-translate.o test/test-bcf-translate.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/test-parse-reg.o test/test-parse-reg.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o test/test_introspection.o test/test_introspection.c sed -n '/^static_libs=/s/[^=]*=/HTSLIB_static_LIBS = /p;/^static_ldflags=/s/[^=]*=/HTSLIB_static_LDFLAGS = /p' htslib.pc.tmp > htslib_static.mk sed -e 's#@-includedir@#'`pwd`'#g;s#@-libdir@#'`pwd`'#g' htslib.pc.tmp > htslib-uninstalled.pc gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -c -o hts.o hts.c hts.c: In function 'hts_hopen': hts.c:1355:31: warning: '%s' directive output between 503 and 2147483645 bytes may cause result to exceed 'INT_MAX' [-Wformat-truncation=] 1355 | snprintf(fn2, fn2_len, "%s%s", prefix, fn); | ^~ In file included from /usr/include/stdio.h:906, from hts.c:30: In function 'snprintf', inlined from 'hts_crypt4gh_redirect' at hts.c:1355:5, inlined from 'hts_hopen' at hts.c:1414:21: /usr/include/bits/stdio2.h:54:10: note: '__snprintf_chk' output between 513 and 2147483655 bytes into a destination of size 2147483655 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/hts_endian test/hts_endian.o -llzma -lbz2 -lz -lm gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/plugins-dlhts test/plugins-dlhts.o -llzma -lbz2 -lz -lm ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o plugin.o ranlib libhts.a gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o bgzip bgzip.o libhts.a -llzma -lbz2 -lz -lm -lpthread gcc -shared -Wl,-soname,libhts.so.3 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico htscodecs/htscodecs/arith_dynamic.pico htscodecs/htscodecs/fqzcomp_qual.pico htscodecs/htscodecs/htscodecs.pico htscodecs/htscodecs/pack.pico htscodecs/htscodecs/rANS_static4x16pr.pico htscodecs/htscodecs/rANS_static.pico htscodecs/htscodecs/rle.pico htscodecs/htscodecs/tokenise_name3.pico plugin.pico -llzma -lbz2 -lz -lm -lpthread ln -sf libhts.so libhts.so.3 gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o htsfile htsfile.o libhts.a -llzma -lbz2 -lz -lm -lpthread gcc -shared -Wl,-E -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o hfile_libcurl.so hfile_libcurl.pico libhts.so -llzma -lbz2 -lz -lm -lcurl -lpthread gcc -shared -Wl,-E -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o hfile_gcs.so hfile_gcs.pico libhts.so -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o tabix tabix.o libhts.a -llzma -lbz2 -lz -lm -lpthread gcc -shared -Wl,-E -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o hfile_s3_write.so hfile_s3_write.pico libhts.so -llzma -lbz2 -lz -lm -lcrypto -lcurl -lpthread gcc -shared -Wl,-E -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o hfile_s3.so hfile_s3.pico libhts.so -llzma -lbz2 -lz -lm -lcrypto -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/fieldarith test/fieldarith.o libhts.a -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/hfile test/hfile.o libhts.a -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/pileup_mod test/pileup_mod.o libhts.a -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/pileup test/pileup.o libhts.a -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/test_bgzf test/test_bgzf.o libhts.a -lz -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/sam test/sam.o libhts.a -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/test_kfunc test/test_kfunc.o libhts.a -lz -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/test_expr test/test_expr.o libhts.a -lz -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/test_kstring test/test_kstring.o libhts.a -lz -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/test_mod test/test_mod.o libhts.a -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/test_realn test/test_realn.o libhts.a -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/test-regidx test/test-regidx.o libhts.a -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/test_str2int test/test_str2int.o libhts.a -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/test_view test/test_view.o libhts.a -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/test_index test/test_index.o libhts.a -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/test-vcf-api test/test-vcf-api.o libhts.a -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/test-parse-reg test/test-parse-reg.o libhts.a -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o test/test_introspection test/test_introspection.o libhts.a -llzma -lbz2 -lz -lm -lpthread + sed -i -E '/^(Libs|Requires)\.private:/d' htslib.pc.tmp + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.gCCH6j + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386 ++ dirname /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd htslib-1.15.1 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386 'INSTALL=/usr/bin/install -p' mkdir -p -m 755 /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/bin /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/include /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/include/htslib /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/lib /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/share/man/man1 /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/share/man/man5 /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/share/man/man7 /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/lib/pkgconfig if test -n "/usr/libexec/htslib"; then mkdir -p -m 755 /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/libexec/htslib; fi /usr/bin/install -p -m 644 libhts.so /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/lib/libhts.so.1.15.1 ln -sf libhts.so.1.15.1 /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/lib/libhts.so ln -sf libhts.so.1.15.1 /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/lib/libhts.so.3 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib#g;s#@-PACKAGE_VERSION@#1.15.1#g' htslib.pc.tmp > /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/lib/pkgconfig/htslib.pc chmod 644 /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/lib/pkgconfig/htslib.pc /usr/bin/install -p bgzip htsfile tabix /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/bin if test -n "hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so"; then /usr/bin/install -p hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/libexec/htslib; fi /usr/bin/install -p -m 644 htslib/*.h /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/include/htslib /usr/bin/install -p -m 644 libhts.a /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/lib/libhts.a /usr/bin/install -p -m 644 bgzip.1 htsfile.1 tabix.1 /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/share/man/man1 /usr/bin/install -p -m 644 faidx.5 sam.5 vcf.5 /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/share/man/man5 /usr/bin/install -p -m 644 htslib-s3-plugin.7 /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/share/man/man7 + pushd /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386//usr/lib ~/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/lib ~/build/BUILD/htslib-1.15.1 + chmod 755 libhts.so.1.15.1 + popd ~/build/BUILD/htslib-1.15.1 + find /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386 -name '*.la' -delete + rm -f /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386//usr/lib/libhts.a + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.15.1-1.fc38 --unique-debug-suffix -1.15.1-1.fc38.i386 --unique-debug-src-base htslib-1.15.1-1.fc38.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/htslib-1.15.1 extracting debug info from /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/bin/htsfile extracting debug info from /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/bin/bgzip extracting debug info from /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/bin/tabix extracting debug info from /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/lib/libhts.so.1.15.1 extracting debug info from /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/libexec/htslib/hfile_gcs.so extracting debug info from /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/libexec/htslib/hfile_libcurl.so extracting debug info from /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/libexec/htslib/hfile_s3.so extracting debug info from /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/libexec/htslib/hfile_s3_write.so original debug info size: 11020kB, size after compression: 10364kB /usr/bin/sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match. 5259 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.snTPRL + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd htslib-1.15.1 + make test gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -Ihtscodecs -D_POSIX_C_SOURCE=200112L -c -o htscodecs/tests/rANS_static_test.o htscodecs/tests/rANS_static_test.c gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o htscodecs/tests/rans4x8 htscodecs/tests/rANS_static_test.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o -llzma -lbz2 -lz -lm -lm -lpthread cd htscodecs/tests && srcdir=. && export srcdir && ./rans4x8.test Testing rans4x8 -r -o0 on ./dat/q4 11674 Testing rans4x8 -r -o1 on ./dat/q4 10870 Testing rans4x8 -r -o0 on ./dat/q40+dir 50258 Testing rans4x8 -r -o1 on ./dat/q40+dir 50537 Testing rans4x8 -r -o0 on ./dat/q8 33099 Testing rans4x8 -r -o1 on ./dat/q8 31428 Testing rans4x8 -r -o0 on ./dat/qvar 32997 Testing rans4x8 -r -o1 on ./dat/qvar 32832 gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -Ihtscodecs -D_POSIX_C_SOURCE=200112L -c -o htscodecs/tests/rANS_static4x16pr_test.o htscodecs/tests/rANS_static4x16pr_test.c gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o htscodecs/tests/rans4x16pr htscodecs/tests/rANS_static4x16pr_test.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o -llzma -lbz2 -lz -lm -lm -lpthread cd htscodecs/tests && srcdir=. && export srcdir && ./rans4x16.test Testing rans4x16 -r -o0 on ./dat/q4 11660 Testing rans4x16 -r -o1 on ./dat/q4 10848 Testing rans4x16 -r -o64 on ./dat/q4 12878 Testing rans4x16 -r -o65 on ./dat/q4 10672 Testing rans4x16 -r -o128 on ./dat/q4 10902 Testing rans4x16 -r -o129 on ./dat/q4 10890 Testing rans4x16 -r -o192 on ./dat/q4 11225 Testing rans4x16 -r -o193 on ./dat/q4 10825 Testing rans4x16 -r -o8 on ./dat/q4 11731 Testing rans4x16 -r -o9 on ./dat/q4 11111 Testing rans4x16 -r -o0 on ./dat/q40+dir 50247 Testing rans4x16 -r -o1 on ./dat/q40+dir 49449 Testing rans4x16 -r -o8 on ./dat/q40+dir 50072 Testing rans4x16 -r -o9 on ./dat/q40+dir 50072 Testing rans4x16 -r -o0 on ./dat/q8 33088 Testing rans4x16 -r -o1 on ./dat/q8 31372 Testing rans4x16 -r -o64 on ./dat/q8 33458 Testing rans4x16 -r -o65 on ./dat/q8 31025 Testing rans4x16 -r -o128 on ./dat/q8 32237 Testing rans4x16 -r -o129 on ./dat/q8 31258 Testing rans4x16 -r -o192 on ./dat/q8 32024 Testing rans4x16 -r -o193 on ./dat/q8 31146 Testing rans4x16 -r -o0 on ./dat/qvar 32987 Testing rans4x16 -r -o1 on ./dat/qvar 32261 gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -Ihtscodecs -D_POSIX_C_SOURCE=200112L -c -o htscodecs/tests/arith_dynamic_test.o htscodecs/tests/arith_dynamic_test.c gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o htscodecs/tests/arith_dynamic htscodecs/tests/arith_dynamic_test.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o -llzma -lbz2 -lz -lm -lm -lpthread cd htscodecs/tests && srcdir=. && export srcdir && ./arith.test Testing arith_dynamic -r -o0 on ./dat/q4 11615 Testing arith_dynamic -r -o1 on ./dat/q4 10831 Testing arith_dynamic -r -o64 on ./dat/q4 13360 Testing arith_dynamic -r -o65 on ./dat/q4 10484 Testing arith_dynamic -r -o128 on ./dat/q4 10774 Testing arith_dynamic -r -o129 on ./dat/q4 10329 Testing arith_dynamic -r -o192 on ./dat/q4 11095 Testing arith_dynamic -r -o193 on ./dat/q4 10283 Testing arith_dynamic -r -o8 on ./dat/q4 11448 Testing arith_dynamic -r -o9 on ./dat/q4 11083 Testing arith_dynamic -r -o0 on ./dat/q40+dir 49949 Testing arith_dynamic -r -o1 on ./dat/q40+dir 49034 Testing arith_dynamic -r -o64 on ./dat/q40+dir 51242 Testing arith_dynamic -r -o65 on ./dat/q40+dir 49061 Testing arith_dynamic -r -o8 on ./dat/q40+dir 49820 Testing arith_dynamic -r -o9 on ./dat/q40+dir 49448 Testing arith_dynamic -r -o0 on ./dat/q8 32752 Testing arith_dynamic -r -o1 on ./dat/q8 31331 Testing arith_dynamic -r -o64 on ./dat/q8 35211 Testing arith_dynamic -r -o65 on ./dat/q8 30907 Testing arith_dynamic -r -o128 on ./dat/q8 32063 Testing arith_dynamic -r -o129 on ./dat/q8 31084 Testing arith_dynamic -r -o192 on ./dat/q8 32267 Testing arith_dynamic -r -o193 on ./dat/q8 30931 Testing arith_dynamic -r -o0 on ./dat/qvar 32597 Testing arith_dynamic -r -o1 on ./dat/qvar 31982 Testing arith_dynamic -r -o64 on ./dat/qvar 33237 Testing arith_dynamic -r -o65 on ./dat/qvar 31993 gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -Ihtscodecs -D_POSIX_C_SOURCE=200112L -c -o htscodecs/tests/tokenise_name3_test.o htscodecs/tests/tokenise_name3_test.c gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o htscodecs/tests/tokenise_name3 htscodecs/tests/tokenise_name3_test.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o -llzma -lbz2 -lz -lm -lm -lpthread cd htscodecs/tests && srcdir=. && export srcdir && ./tok3.test Testing tokenise_name3 -r -1 on ./names/01.names 3392 Testing tokenise_name3 -r -3 on ./names/01.names 2471 Testing tokenise_name3 -r -5 on ./names/01.names 2283 Testing tokenise_name3 -r -7 on ./names/01.names 2234 Testing tokenise_name3 -r -9 on ./names/01.names 2234 Testing tokenise_name3 -r -11 on ./names/01.names 3151 Testing tokenise_name3 -r -13 on ./names/01.names 2424 Testing tokenise_name3 -r -15 on ./names/01.names 2061 Testing tokenise_name3 -r -17 on ./names/01.names 2051 Testing tokenise_name3 -r -19 on ./names/01.names 2049 Testing tokenise_name3 -r -1 on ./names/02.names 6633 Testing tokenise_name3 -r -3 on ./names/02.names 4983 Testing tokenise_name3 -r -5 on ./names/02.names 4942 Testing tokenise_name3 -r -7 on ./names/02.names 4922 Testing tokenise_name3 -r -9 on ./names/02.names 4918 Testing tokenise_name3 -r -11 on ./names/02.names 6087 Testing tokenise_name3 -r -13 on ./names/02.names 4797 Testing tokenise_name3 -r -15 on ./names/02.names 4714 Testing tokenise_name3 -r -17 on ./names/02.names 4695 Testing tokenise_name3 -r -19 on ./names/02.names 4695 Testing tokenise_name3 -r -1 on ./names/03.names 10557 Testing tokenise_name3 -r -3 on ./names/03.names 7822 Testing tokenise_name3 -r -5 on ./names/03.names 7557 Testing tokenise_name3 -r -7 on ./names/03.names 7521 Testing tokenise_name3 -r -9 on ./names/03.names 7521 Testing tokenise_name3 -r -11 on ./names/03.names 9294 Testing tokenise_name3 -r -13 on ./names/03.names 7291 Testing tokenise_name3 -r -15 on ./names/03.names 7125 Testing tokenise_name3 -r -17 on ./names/03.names 7069 Testing tokenise_name3 -r -19 on ./names/03.names 7068 Testing tokenise_name3 -r -1 on ./names/05.names 5098 Testing tokenise_name3 -r -3 on ./names/05.names 3600 Testing tokenise_name3 -r -5 on ./names/05.names 3551 Testing tokenise_name3 -r -7 on ./names/05.names 3534 Testing tokenise_name3 -r -9 on ./names/05.names 3534 Testing tokenise_name3 -r -11 on ./names/05.names 4648 Testing tokenise_name3 -r -13 on ./names/05.names 3405 Testing tokenise_name3 -r -15 on ./names/05.names 3381 Testing tokenise_name3 -r -17 on ./names/05.names 3377 Testing tokenise_name3 -r -19 on ./names/05.names 3377 Testing tokenise_name3 -r -1 on ./names/08.names 6841 Testing tokenise_name3 -r -3 on ./names/08.names 5291 Testing tokenise_name3 -r -5 on ./names/08.names 5206 Testing tokenise_name3 -r -7 on ./names/08.names 5160 Testing tokenise_name3 -r -9 on ./names/08.names 5160 Testing tokenise_name3 -r -11 on ./names/08.names 6374 Testing tokenise_name3 -r -13 on ./names/08.names 4895 Testing tokenise_name3 -r -15 on ./names/08.names 4851 Testing tokenise_name3 -r -17 on ./names/08.names 4805 Testing tokenise_name3 -r -19 on ./names/08.names 4805 Testing tokenise_name3 -r -1 on ./names/09.names 5339 Testing tokenise_name3 -r -3 on ./names/09.names 3598 Testing tokenise_name3 -r -5 on ./names/09.names 3527 Testing tokenise_name3 -r -7 on ./names/09.names 3493 Testing tokenise_name3 -r -9 on ./names/09.names 3493 Testing tokenise_name3 -r -11 on ./names/09.names 4861 Testing tokenise_name3 -r -13 on ./names/09.names 3427 Testing tokenise_name3 -r -15 on ./names/09.names 3391 Testing tokenise_name3 -r -17 on ./names/09.names 3366 Testing tokenise_name3 -r -19 on ./names/09.names 3366 Testing tokenise_name3 -r -1 on ./names/10.names 6458 Testing tokenise_name3 -r -3 on ./names/10.names 4843 Testing tokenise_name3 -r -5 on ./names/10.names 4799 Testing tokenise_name3 -r -7 on ./names/10.names 4746 Testing tokenise_name3 -r -9 on ./names/10.names 4744 Testing tokenise_name3 -r -11 on ./names/10.names 5785 Testing tokenise_name3 -r -13 on ./names/10.names 4567 Testing tokenise_name3 -r -15 on ./names/10.names 4492 Testing tokenise_name3 -r -17 on ./names/10.names 4472 Testing tokenise_name3 -r -19 on ./names/10.names 4472 Testing tokenise_name3 -r -1 on ./names/20.names 2511 Testing tokenise_name3 -r -3 on ./names/20.names 1701 Testing tokenise_name3 -r -5 on ./names/20.names 1659 Testing tokenise_name3 -r -7 on ./names/20.names 1632 Testing tokenise_name3 -r -9 on ./names/20.names 1632 Testing tokenise_name3 -r -11 on ./names/20.names 2319 Testing tokenise_name3 -r -13 on ./names/20.names 1629 Testing tokenise_name3 -r -15 on ./names/20.names 1605 Testing tokenise_name3 -r -17 on ./names/20.names 1600 Testing tokenise_name3 -r -19 on ./names/20.names 1600 Testing tokenise_name3 -r -1 on ./names/nv.names 6816 Testing tokenise_name3 -r -3 on ./names/nv.names 4989 Testing tokenise_name3 -r -5 on ./names/nv.names 4972 Testing tokenise_name3 -r -7 on ./names/nv.names 4937 Testing tokenise_name3 -r -9 on ./names/nv.names 4937 Testing tokenise_name3 -r -11 on ./names/nv.names 6084 Testing tokenise_name3 -r -13 on ./names/nv.names 4825 Testing tokenise_name3 -r -15 on ./names/nv.names 4771 Testing tokenise_name3 -r -17 on ./names/nv.names 4767 Testing tokenise_name3 -r -19 on ./names/nv.names 4767 Testing tokenise_name3 -r -1 on ./names/nv2.names 1181 Testing tokenise_name3 -r -3 on ./names/nv2.names 903 Testing tokenise_name3 -r -5 on ./names/nv2.names 879 Testing tokenise_name3 -r -7 on ./names/nv2.names 846 Testing tokenise_name3 -r -9 on ./names/nv2.names 846 Testing tokenise_name3 -r -11 on ./names/nv2.names 891 Testing tokenise_name3 -r -13 on ./names/nv2.names 836 Testing tokenise_name3 -r -15 on ./names/nv2.names 764 Testing tokenise_name3 -r -17 on ./names/nv2.names 747 Testing tokenise_name3 -r -19 on ./names/nv2.names 747 Testing tokenise_name3 -r -1 on ./names/rr.names 8788 Testing tokenise_name3 -r -3 on ./names/rr.names 6290 Testing tokenise_name3 -r -5 on ./names/rr.names 6252 Testing tokenise_name3 -r -7 on ./names/rr.names 6230 Testing tokenise_name3 -r -9 on ./names/rr.names 6230 Testing tokenise_name3 -r -11 on ./names/rr.names 8319 Testing tokenise_name3 -r -13 on ./names/rr.names 6066 Testing tokenise_name3 -r -15 on ./names/rr.names 5972 Testing tokenise_name3 -r -17 on ./names/rr.names 5963 Testing tokenise_name3 -r -19 on ./names/rr.names 5963 gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -Ihtscodecs -D_POSIX_C_SOURCE=200112L -c -o htscodecs/tests/fqzcomp_qual_test.o htscodecs/tests/fqzcomp_qual_test.c gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o htscodecs/tests/fqzcomp_qual htscodecs/tests/fqzcomp_qual_test.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o -llzma -lbz2 -lz -lm -lm -lpthread cd htscodecs/tests && srcdir=. && export srcdir && ./fqzcomp.test Testing fqzcomp_qual -r -s 0 on ./dat/q4 9307 Testing fqzcomp_qual -r -s 1 on ./dat/q4 9618 Testing fqzcomp_qual -r -s 2 on ./dat/q4 9453 Testing fqzcomp_qual -r -s 3 on ./dat/q4 10481 Testing fqzcomp_qual -r -s 0 on ./dat/q40+dir 47674 Testing fqzcomp_qual -r -s 1 on ./dat/q40+dir 45016 Testing fqzcomp_qual -r -s 2 on ./dat/q40+dir 47760 Testing fqzcomp_qual -r -s 3 on ./dat/q40+dir 48583 Testing fqzcomp_qual -r -s 0 on ./dat/q8 30012 Testing fqzcomp_qual -r -s 1 on ./dat/q8 33742 Testing fqzcomp_qual -r -s 2 on ./dat/q8 30982 Testing fqzcomp_qual -r -s 3 on ./dat/q8 31709 Testing fqzcomp_qual -r -s 0 on ./dat/qvar 32868 Testing fqzcomp_qual -r -s 1 on ./dat/qvar 35007 Testing fqzcomp_qual -r -s 2 on ./dat/qvar 32400 Testing fqzcomp_qual -r -s 3 on ./dat/qvar 32073 gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fvisibility=hidden -I. -Ihtscodecs -D_POSIX_C_SOURCE=200112L -c -o htscodecs/tests/varint_test.o htscodecs/tests/varint_test.c gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fvisibility=hidden -rdynamic -o htscodecs/tests/varint htscodecs/tests/varint_test.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o -llzma -lbz2 -lz -lm -lm -lpthread cd htscodecs/tests && ./varint test/hts_endian test/test_expr test/test_kfunc test/test_kstring test/test_str2int test/fieldarith test/fieldarith.sam test/hfile HTS_PATH=. test/with-shlib.sh test/plugins-dlhts -g ./libhts.so HTS_PATH=. test/with-shlib.sh test/plugins-dlhts -l ./libhts.so test/test_bgzf test/bgziptest.txt test/test-parse-reg -t test/colons.bam Expected error: [E::hts_parse_region] Range is ambiguous. Use {chr1:100-200} or {chr1}:100-200 instead Expected error: [E::hts_parse_region] Range is ambiguous. Use {chr1:100-200,chr3} or {chr1}:100-200,chr3 instead Expected error: [E::hts_parse_region] Mismatching braces in "{chr1" Expected error: [E::hts_parse_region] Unexpected string "x" after region Expected error: [E::hts_parse_region] Unexpected string "y" after region Expected error: [E::hts_parse_region] Unexpected string "chr3" after region cd test/sam_filter && ./filter.sh filter.tst Testing sam_filter... PASS : $tv -i 'filter=qname =~ "\.1" && cigar =~ "D"' ../ce#1000.sam PASS : $tv -i 'filter=rname=="CHROMOSOME_II"' ../ce#5b.sam PASS : $tv -i 'filter=rname=~"CHROMOSOME_II"' ../ce#5b.sam PASS : $tv -i 'filter=cigar=~"D"' ../ce#1000.sam PASS : $tv -i 'filter=seq =~ "(AT){2}"' ../ce#1000.sam PASS : $tv -i 'filter=library=="x"' ../xx#rg.sam PASS : $tv -i 'filter=library!="x"' ../xx#rg.sam PASS : $tv -i 'filter=pos % 23 == 11' ../ce#1000.sam |egrep -cv '^@' PASS : $tv -i 'filter=qlen/(flag*mapq+pos)>5' ../ce#1000.sam |egrep -cv '^@' PASS : $tv -i 'filter=[NM]>=10 || [MD]=~"A.*A.*A"' -t4 ../ce#1000.sam |egrep -cv '^@' PASS : $tv -i 'filter=length(seq) != qlen' ../ce#5b.sam | egrep -cv '^@' PASS : $tv -i 'filter=min(qual) >= 20' ../ce#1000.sam | egrep -cv '^@' PASS : $tv -i 'filter=max(qual) <= 20' ../ce#1000.sam | egrep -cv '^@' PASS : $tv -i 'filter=avg(qual) >= 20 && avg(qual) <= 30' ../ce#1000.sam | egrep -cv '^@' Expected passes: 14 Unexpected passes: 0 Expected failures: 0 Unexpected failures: 0 cd test/tabix && ./test-tabix.sh tabix.tst Testing tabix... PASS : $tabix -f -p vcf vcf_file.tbi.tmp.vcf.gz PASS : $tabix vcf_file.tbi.tmp.vcf.gz 1:3000151-3000151 PASS : $tabix vcf_file.tbi.tmp.vcf.gz 2:3199812-3199812 PASS : $tabix -f -C -p vcf vcf_file.csi.tmp.vcf.gz PASS : $tabix vcf_file.csi.tmp.vcf.gz 1:3000151-3000151 PASS : $tabix vcf_file.csi.tmp.vcf.gz 2:3199812-3199812 PASS : $tabix -f -p vcf large_chr.tmp.vcf.gz (must exit non-zero) PASS : $tabix -f -C -p vcf large_chr.tmp.vcf.gz PASS : $tabix large_chr.tmp.vcf.gz chr20:1-2147483647 PASS : $tabix -f -p bed bed_file.tbi.tmp.bed.gz PASS : $tabix bed_file.tbi.tmp.bed.gz Y:100200-100200 PASS : $tabix -f -p gff gff_file.tbi.tmp.gff.gz PASS : $tabix gff_file.tbi.tmp.gff.gz X:2934832-2935190 PASS : $tabix --separate-regions bed_file.tbi.tmp.bed.gz X:1100-1400 Y:100000-100550 Z:100000-100005 Expected passes: 14 Unexpected passes: 0 Expected failures: 0 Unexpected failures: 0 cd test/mpileup && ./test-pileup.sh mpileup.tst Testing (m)pileup... PASS : $pileup mp_D.sam PASS : $pileup -m mp_D.sam PASS : $pileup mp_DI.sam PASS : $pileup -m mp_DI.sam PASS : $pileup mp_I.sam PASS : $pileup -m mp_I.sam PASS : $pileup mp_P.sam PASS : $pileup -m mp_P.sam PASS : $pileup mp_ID.sam PASS : $pileup -m mp_ID.sam PASS : $pileup mp_N.sam PASS : $pileup -m mp_N.sam PASS : $pileup mp_N2.sam PASS : $pileup -m mp_N2.sam PASS : $pileup c1#pad1.sam PASS : $pileup -m c1#pad1.sam PASS : $pileup c1#pad2.sam PASS : $pileup -m c1#pad2.sam PASS : $pileup c1#pad3.sam PASS : $pileup -m c1#pad3.sam PASS : $pileup -m small.bam Expected passes: 21 Unexpected passes: 0 Expected failures: 0 Unexpected failures: 0 cd test/fastq && ./test-fastq.sh Testing fastq support PASS : $tview minimal.fq PASS : $tview minimal.fa PASS : $tview multiline.fq PASS : $tview multiline.fa PASS : $tview single.fq PASS : $tview single.fa PASS : $tview -i fastq_aux single.fq PASS : $tview -i fastq_aux single.fa PASS : $tview interleaved.fq PASS : $tview interleaved.fa PASS : $tview -i fastq_aux interleaved.fq PASS : $tview -i fastq_aux interleaved.fa PASS : $tview -i fastq_casava interleaved_casava.fq PASS : $tview -i fastq_barcode=OX -i fastq_casava interleaved_casava.fq PASS : $tview -i fastq_casava interleaved_casava.fa PASS : $tview -i fastq_barcode=OX -i fastq_casava interleaved_casava.fa PASS : $tview -i fastq_casava filter_casava.fq PASS : $tview -i fastq_casava filter_casava.fa PASS : $tview -i fastq_aux r1.fq PASS : $tview -i fastq_aux r2.fq PASS : $tview -i fastq_aux r1.fa PASS : $tview -i fastq_aux r2.fa PASS : $tview -i fastq_name2 name2.fq PASS : $tview -i fastq_name2 name2.fa PASS : $tview -f minimal.sam PASS : $tview -F minimal.sam PASS : $tview -f -o fastq_aux single_aux.sam PASS : $tview -F -o fastq_aux single_aux.sam PASS : $tview -f -o fastq_aux -o fastq_rnum inter_aux.sam PASS : $tview -F -o fastq_aux -o fastq_rnum inter_aux.sam PASS : $tview -f -o fastq_casava inter_casava.sam PASS : $tview -f -o fastq_barcode=OX -o fastq_casava inter_casavaOX.sam PASS : $tview -F -o fastq_casava inter_casava.sam PASS : $tview -F -o fastq_barcode=OX -o fastq_casava inter_casavaOX.sam PASS : $tview -f -o fastq_casava filter_casava.sam PASS : $tview -F -o fastq_casava filter_casava.sam PASS : $tview -f -o fastq_aux -o fastq_rnum r1.sam PASS : $tview -f -o fastq_aux -o fastq_rnum r2.sam PASS : $tview -F -o fastq_aux -o fastq_rnum r1.sam PASS : $tview -F -o fastq_aux -o fastq_rnum r2.sam Expected passes: 40 Unexpected passes: 0 Expected failures: 0 Unexpected failures: 0 cd test/base_mods && ./base-mods.sh base-mods.tst Testing base-modifications... PASS : $test_mod MM-chebi.sam PASS : $test_mod MM-double.sam PASS : $test_mod MM-multi.sam PASS : $pileup_mod < MM-pileup.sam PASS : $pileup_mod < MM-pileup2.sam Expected passes: 5 Unexpected passes: 0 Expected failures: 0 Unexpected failures: 0 REF_PATH=: test/sam test/ce.fa test/faidx.fa test/fastqs.fq (Expect trailing 'x' message for " -1,001x") [W::hts_parse_decimal] Ignoring unknown characters after -1,001[x] (Expect trailing 'k' message for "1.5e+3k") [W::hts_parse_decimal] Ignoring unknown characters after 1.5e+3[k] (Expect dropped fraction message for "12.3456k") [W::hts_parse_decimal] Discarding fractional part of 12.3456k [W::hts_parse_decimal] Discarding fractional part of 12.3456k (Expect invalid numeric message for "A") [W::hts_parse_decimal] Invalid numeric value A[truncated] (Expect invalid numeric message for "G") [W::hts_parse_decimal] Invalid numeric value G[truncated] (Expect invalid numeric message for " +/-") [W::hts_parse_decimal] Invalid numeric value +/-[truncated] (Expect invalid numeric message for " -.e+9999") [W::hts_parse_decimal] Invalid numeric value -.e+9999[truncated] test/test-regidx cd test && REF_PATH=: ./test.pl ${TEST_OPTS:-} "my" variable @p masks earlier declaration in same scope at ./test.pl line 617. bgzip round-trip no threads: .. ok bgzip -b no threads: .. ok bgzip -b -I no threads: .. ok bgzip round-trip 4 threads: .. ok bgzip -b 4 threads: .. ok bgzip -b -I 4 threads: .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -l 0 -b -m 14 -x /tmp/pupv9IC0gr/index.bam.csi /builddir/build/BUILD/htslib-1.15.1/test/index.sam > /tmp/pupv9IC0gr/index.bam .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index -c /tmp/pupv9IC0gr/index.bam .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -l 0 -b -m 0 -x /tmp/pupv9IC0gr/index.bam.bai /builddir/build/BUILD/htslib-1.15.1/test/index.sam > /tmp/pupv9IC0gr/index.bam .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index -b /tmp/pupv9IC0gr/index.bam .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -l 0 -z -m 14 -x /tmp/pupv9IC0gr/index.sam.gz.csi /builddir/build/BUILD/htslib-1.15.1/test/index.sam > /tmp/pupv9IC0gr/index.sam.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index -c /tmp/pupv9IC0gr/index.sam.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -l 0 -z -m 0 -x /tmp/pupv9IC0gr/index.sam.gz.bai /builddir/build/BUILD/htslib-1.15.1/test/index.sam > /tmp/pupv9IC0gr/index.sam.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index -b /tmp/pupv9IC0gr/index.sam.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -l 0 -z -m 14 -x /tmp/pupv9IC0gr/index.sam.gz.csi /builddir/build/BUILD/htslib-1.15.1/test/index_dos.sam > /tmp/pupv9IC0gr/index.sam.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index -c /tmp/pupv9IC0gr/index.sam.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -l 0 -z -m 0 -x /tmp/pupv9IC0gr/index.sam.gz.bai /builddir/build/BUILD/htslib-1.15.1/test/index_dos.sam > /tmp/pupv9IC0gr/index.sam.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index -b /tmp/pupv9IC0gr/index.sam.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -l 0 -C -x /tmp/pupv9IC0gr/index.cram.crai /builddir/build/BUILD/htslib-1.15.1/test/index.sam > /tmp/pupv9IC0gr/index.cram .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index /tmp/pupv9IC0gr/index.cram .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -l 0 -b -m 14 -x /tmp/pupv9IC0gr/index.bcf.csi /builddir/build/BUILD/htslib-1.15.1/test/index.vcf > /tmp/pupv9IC0gr/index.bcf .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index -c /tmp/pupv9IC0gr/index.bcf .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -l 0 -z -m 14 -x /tmp/pupv9IC0gr/index.vcf.gz.csi /builddir/build/BUILD/htslib-1.15.1/test/index.vcf > /tmp/pupv9IC0gr/index.vcf.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index -c /tmp/pupv9IC0gr/index.vcf.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -l 0 -z -m 0 -x /tmp/pupv9IC0gr/index.vcf.gz.tbi /builddir/build/BUILD/htslib-1.15.1/test/index.vcf > /tmp/pupv9IC0gr/index.vcf.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index -t /tmp/pupv9IC0gr/index.vcf.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/tabix /tmp/pupv9IC0gr/index.vcf.gz##idx##/tmp/pupv9IC0gr/index.vcf.gz.tbi 1:10000060-10000060 .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view /tmp/pupv9IC0gr/index2.bam 1:1000000-1000000 .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view /tmp/pupv9IC0gr/index2.bam 1:2000000-2000000 .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view /tmp/pupv9IC0gr/index2.bam 2:1000000-1000000 .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view /tmp/pupv9IC0gr/index2.bam 2:2000000-2000000 .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -@4 -l 0 -b -m 14 -x /tmp/pupv9IC0gr/index.bam.csi /builddir/build/BUILD/htslib-1.15.1/test/index.sam > /tmp/pupv9IC0gr/index.bam .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index -c /tmp/pupv9IC0gr/index.bam .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -@4 -l 0 -b -m 0 -x /tmp/pupv9IC0gr/index.bam.bai /builddir/build/BUILD/htslib-1.15.1/test/index.sam > /tmp/pupv9IC0gr/index.bam .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index -b /tmp/pupv9IC0gr/index.bam .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -@4 -l 0 -z -m 14 -x /tmp/pupv9IC0gr/index.sam.gz.csi /builddir/build/BUILD/htslib-1.15.1/test/index.sam > /tmp/pupv9IC0gr/index.sam.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index -c /tmp/pupv9IC0gr/index.sam.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -@4 -l 0 -z -m 0 -x /tmp/pupv9IC0gr/index.sam.gz.bai /builddir/build/BUILD/htslib-1.15.1/test/index.sam > /tmp/pupv9IC0gr/index.sam.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index -b /tmp/pupv9IC0gr/index.sam.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -@4 -l 0 -z -m 14 -x /tmp/pupv9IC0gr/index.sam.gz.csi /builddir/build/BUILD/htslib-1.15.1/test/index_dos.sam > /tmp/pupv9IC0gr/index.sam.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index -c /tmp/pupv9IC0gr/index.sam.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -@4 -l 0 -z -m 0 -x /tmp/pupv9IC0gr/index.sam.gz.bai /builddir/build/BUILD/htslib-1.15.1/test/index_dos.sam > /tmp/pupv9IC0gr/index.sam.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index -b /tmp/pupv9IC0gr/index.sam.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -@4 -l 0 -C -x /tmp/pupv9IC0gr/index.cram.crai /builddir/build/BUILD/htslib-1.15.1/test/index.sam > /tmp/pupv9IC0gr/index.cram .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index /tmp/pupv9IC0gr/index.cram .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -@4 -l 0 -b -m 14 -x /tmp/pupv9IC0gr/index.bcf.csi /builddir/build/BUILD/htslib-1.15.1/test/index.vcf > /tmp/pupv9IC0gr/index.bcf .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index -c /tmp/pupv9IC0gr/index.bcf .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -@4 -l 0 -z -m 14 -x /tmp/pupv9IC0gr/index.vcf.gz.csi /builddir/build/BUILD/htslib-1.15.1/test/index.vcf > /tmp/pupv9IC0gr/index.vcf.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index -c /tmp/pupv9IC0gr/index.vcf.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view -@4 -l 0 -z -m 0 -x /tmp/pupv9IC0gr/index.vcf.gz.tbi /builddir/build/BUILD/htslib-1.15.1/test/index.vcf > /tmp/pupv9IC0gr/index.vcf.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_index -t /tmp/pupv9IC0gr/index.vcf.gz .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/tabix /tmp/pupv9IC0gr/index.vcf.gz##idx##/tmp/pupv9IC0gr/index.vcf.gz.tbi 1:10000060-10000060 .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view /tmp/pupv9IC0gr/index2.bam 1:1000000-1000000 .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view /tmp/pupv9IC0gr/index2.bam 1:2000000-2000000 .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view /tmp/pupv9IC0gr/index2.bam 2:1000000-1000000 .. ok test_index: /builddir/build/BUILD/htslib-1.15.1/test/test_view /tmp/pupv9IC0gr/index2.bam 2:2000000-2000000 .. ok test_view testing multi-ref CRAM modes: ./test_view -o seqs_per_slice=100 -o no_ref=1 -o multi_seq_per_slice=-1 -S -C multi_ref.tmp.sam > multi_ref.tmp.cram ./test_view multi_ref.tmp.cram > multi_ref.tmp.sam_ ./compare_sam.pl multi_ref.tmp.sam multi_ref.tmp.sam_ ./test_view -o seqs_per_slice=100 -o no_ref=1 -o multi_seq_per_slice=0 -S -C multi_ref.tmp.sam > multi_ref.tmp.cram ./test_view multi_ref.tmp.cram > multi_ref.tmp.sam_ ./compare_sam.pl multi_ref.tmp.sam multi_ref.tmp.sam_ ./test_view -o seqs_per_slice=100 -o no_ref=1 -o multi_seq_per_slice=1 -S -C multi_ref.tmp.sam > multi_ref.tmp.cram ./test_view multi_ref.tmp.cram > multi_ref.tmp.sam_ ./compare_sam.pl multi_ref.tmp.sam multi_ref.tmp.sam_ .. ok test_view testing multi-ref CRAM modes: ./test_view -@4 -o seqs_per_slice=100 -o no_ref=1 -o multi_seq_per_slice=-1 -S -C multi_ref.tmp.sam > multi_ref.tmp.cram ./test_view -@4 multi_ref.tmp.cram > multi_ref.tmp.sam_ ./compare_sam.pl multi_ref.tmp.sam multi_ref.tmp.sam_ ./test_view -@4 -o seqs_per_slice=100 -o no_ref=1 -o multi_seq_per_slice=0 -S -C multi_ref.tmp.sam > multi_ref.tmp.cram ./test_view -@4 multi_ref.tmp.cram > multi_ref.tmp.sam_ ./compare_sam.pl multi_ref.tmp.sam multi_ref.tmp.sam_ ./test_view -@4 -o seqs_per_slice=100 -o no_ref=1 -o multi_seq_per_slice=1 -S -C multi_ref.tmp.sam > multi_ref.tmp.cram ./test_view -@4 multi_ref.tmp.cram > multi_ref.tmp.sam_ ./compare_sam.pl multi_ref.tmp.sam multi_ref.tmp.sam_ .. ok test_view testing auxf#values.sam, ref auxf.fa: ./test_view -S -l0 -b auxf#values.sam > auxf#values.tmp.bam ./test_view auxf#values.tmp.bam > auxf#values.tmp.bam.sam_ ./compare_sam.pl auxf#values.sam auxf#values.tmp.bam.sam_ ./test_view -t auxf.fa -S -C -o VERSION=2.1 auxf#values.sam > auxf#values.tmp.cram ./test_view -D auxf#values.tmp.cram > auxf#values.tmp.cram.sam_ ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.cram.sam_ ./test_view -t auxf.fa -C -o VERSION=3.0 auxf#values.tmp.bam > auxf#values.tmp.bam.cram ./test_view auxf#values.tmp.bam.cram > auxf#values.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.bam.cram.bam.sam_ ./test_view -i reference=auxf.fa auxf#values_java.cram > auxf#values_java.tmp.sam_ ./compare_sam.pl -Baux -nomd auxf#values.sam auxf#values_java.tmp.sam_ .. ok test_view testing c1#bounds.sam, ref c1.fa: ./test_view -S -l0 -b c1#bounds.sam > c1#bounds.tmp.bam ./test_view c1#bounds.tmp.bam > c1#bounds.tmp.bam.sam_ ./compare_sam.pl c1#bounds.sam c1#bounds.tmp.bam.sam_ ./test_view -t c1.fa -S -C -o VERSION=2.1 c1#bounds.sam > c1#bounds.tmp.cram ./test_view -D c1#bounds.tmp.cram > c1#bounds.tmp.cram.sam_ ./compare_sam.pl -nomd c1#bounds.sam c1#bounds.tmp.cram.sam_ ./test_view -t c1.fa -C -o VERSION=3.0 c1#bounds.tmp.bam > c1#bounds.tmp.bam.cram ./test_view c1#bounds.tmp.bam.cram > c1#bounds.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#bounds.sam c1#bounds.tmp.bam.cram.bam.sam_ .. ok test_view testing c1#clip.sam, ref c1.fa: ./test_view -S -l0 -b c1#clip.sam > c1#clip.tmp.bam ./test_view c1#clip.tmp.bam > c1#clip.tmp.bam.sam_ ./compare_sam.pl c1#clip.sam c1#clip.tmp.bam.sam_ ./test_view -t c1.fa -S -C -o VERSION=2.1 c1#clip.sam > c1#clip.tmp.cram ./test_view -D c1#clip.tmp.cram > c1#clip.tmp.cram.sam_ ./compare_sam.pl -nomd c1#clip.sam c1#clip.tmp.cram.sam_ ./test_view -t c1.fa -C -o VERSION=3.0 c1#clip.tmp.bam > c1#clip.tmp.bam.cram ./test_view c1#clip.tmp.bam.cram > c1#clip.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#clip.sam c1#clip.tmp.bam.cram.bam.sam_ .. ok test_view testing c1#noseq.sam, ref c1.fa: ./test_view -S -l0 -b c1#noseq.sam > c1#noseq.tmp.bam ./test_view c1#noseq.tmp.bam > c1#noseq.tmp.bam.sam_ ./compare_sam.pl c1#noseq.sam c1#noseq.tmp.bam.sam_ ./test_view -t c1.fa -S -C -o VERSION=2.1 c1#noseq.sam > c1#noseq.tmp.cram ./test_view -D c1#noseq.tmp.cram > c1#noseq.tmp.cram.sam_ ./compare_sam.pl -nomd c1#noseq.sam c1#noseq.tmp.cram.sam_ ./test_view -t c1.fa -C -o VERSION=3.0 c1#noseq.tmp.bam > c1#noseq.tmp.bam.cram ./test_view c1#noseq.tmp.bam.cram > c1#noseq.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#noseq.sam c1#noseq.tmp.bam.cram.bam.sam_ .. ok test_view testing c1#pad1.sam, ref c1.fa: ./test_view -S -l0 -b c1#pad1.sam > c1#pad1.tmp.bam ./test_view c1#pad1.tmp.bam > c1#pad1.tmp.bam.sam_ ./compare_sam.pl c1#pad1.sam c1#pad1.tmp.bam.sam_ ./test_view -t c1.fa -S -C -o VERSION=2.1 c1#pad1.sam > c1#pad1.tmp.cram ./test_view -D c1#pad1.tmp.cram > c1#pad1.tmp.cram.sam_ ./compare_sam.pl -nomd c1#pad1.sam c1#pad1.tmp.cram.sam_ ./test_view -t c1.fa -C -o VERSION=3.0 c1#pad1.tmp.bam > c1#pad1.tmp.bam.cram ./test_view c1#pad1.tmp.bam.cram > c1#pad1.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#pad1.sam c1#pad1.tmp.bam.cram.bam.sam_ .. ok test_view testing c1#pad2.sam, ref c1.fa: ./test_view -S -l0 -b c1#pad2.sam > c1#pad2.tmp.bam ./test_view c1#pad2.tmp.bam > c1#pad2.tmp.bam.sam_ ./compare_sam.pl c1#pad2.sam c1#pad2.tmp.bam.sam_ ./test_view -t c1.fa -S -C -o VERSION=2.1 c1#pad2.sam > c1#pad2.tmp.cram ./test_view -D c1#pad2.tmp.cram > c1#pad2.tmp.cram.sam_ ./compare_sam.pl -nomd c1#pad2.sam c1#pad2.tmp.cram.sam_ ./test_view -t c1.fa -C -o VERSION=3.0 c1#pad2.tmp.bam > c1#pad2.tmp.bam.cram ./test_view c1#pad2.tmp.bam.cram > c1#pad2.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#pad2.sam c1#pad2.tmp.bam.cram.bam.sam_ .. ok test_view testing c1#pad3.sam, ref c1.fa: ./test_view -S -l0 -b c1#pad3.sam > c1#pad3.tmp.bam ./test_view c1#pad3.tmp.bam > c1#pad3.tmp.bam.sam_ ./compare_sam.pl c1#pad3.sam c1#pad3.tmp.bam.sam_ ./test_view -t c1.fa -S -C -o VERSION=2.1 c1#pad3.sam > c1#pad3.tmp.cram ./test_view -D c1#pad3.tmp.cram > c1#pad3.tmp.cram.sam_ ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.cram.sam_ ./test_view -t c1.fa -C -o VERSION=3.0 c1#pad3.tmp.bam > c1#pad3.tmp.bam.cram ./test_view c1#pad3.tmp.bam.cram > c1#pad3.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.bam.cram.bam.sam_ .. ok test_view testing c1#unknown.sam, ref c1.fa: ./test_view -S -l0 -b c1#unknown.sam > c1#unknown.tmp.bam ./test_view c1#unknown.tmp.bam > c1#unknown.tmp.bam.sam_ ./compare_sam.pl c1#unknown.sam c1#unknown.tmp.bam.sam_ ./test_view -t c1.fa -S -C -o VERSION=2.1 c1#unknown.sam > c1#unknown.tmp.cram ./test_view -D c1#unknown.tmp.cram > c1#unknown.tmp.cram.sam_ ./compare_sam.pl -nomd c1#unknown.sam c1#unknown.tmp.cram.sam_ ./test_view -t c1.fa -C -o VERSION=3.0 c1#unknown.tmp.bam > c1#unknown.tmp.bam.cram ./test_view c1#unknown.tmp.bam.cram > c1#unknown.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#unknown.sam c1#unknown.tmp.bam.cram.bam.sam_ .. ok test_view testing c2#pad.sam, ref c2.fa: ./test_view -S -l0 -b c2#pad.sam > c2#pad.tmp.bam ./test_view c2#pad.tmp.bam > c2#pad.tmp.bam.sam_ ./compare_sam.pl c2#pad.sam c2#pad.tmp.bam.sam_ ./test_view -t c2.fa -S -C -o VERSION=2.1 c2#pad.sam > c2#pad.tmp.cram ./test_view -D c2#pad.tmp.cram > c2#pad.tmp.cram.sam_ ./compare_sam.pl -nomd c2#pad.sam c2#pad.tmp.cram.sam_ ./test_view -t c2.fa -C -o VERSION=3.0 c2#pad.tmp.bam > c2#pad.tmp.bam.cram ./test_view c2#pad.tmp.bam.cram > c2#pad.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c2#pad.sam c2#pad.tmp.bam.cram.bam.sam_ .. ok test_view testing ce#1.sam, ref ce.fa: ./test_view -S -l0 -b ce#1.sam > ce#1.tmp.bam ./test_view ce#1.tmp.bam > ce#1.tmp.bam.sam_ ./compare_sam.pl ce#1.sam ce#1.tmp.bam.sam_ ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#1.sam > ce#1.tmp.cram ./test_view -D ce#1.tmp.cram > ce#1.tmp.cram.sam_ ./compare_sam.pl -nomd ce#1.sam ce#1.tmp.cram.sam_ ./test_view -t ce.fa -C -o VERSION=3.0 ce#1.tmp.bam > ce#1.tmp.bam.cram ./test_view ce#1.tmp.bam.cram > ce#1.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#1.sam ce#1.tmp.bam.cram.bam.sam_ .. ok test_view testing ce#1000.sam, ref ce.fa: ./test_view -S -b ce#1000.sam > ce#1000.tmp.bam ./test_view ce#1000.tmp.bam > ce#1000.tmp.bam.sam_ ./compare_sam.pl ce#1000.sam ce#1000.tmp.bam.sam_ ./test_view -S -l0 -b ce#1000.sam > ce#1000.tmp.bam ./test_view ce#1000.tmp.bam > ce#1000.tmp.bam.sam_ ./compare_sam.pl ce#1000.sam ce#1000.tmp.bam.sam_ ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#1000.sam > ce#1000.tmp.cram ./test_view -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_ ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_ ./test_view -t ce.fa -S -l0 -C -o VERSION=3.0 ce#1000.sam > ce#1000.tmp.cram ./test_view -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_ ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_ ./test_view -t ce.fa -C -o VERSION=3.0 ce#1000.tmp.bam > ce#1000.tmp.bam.cram ./test_view ce#1000.tmp.bam.cram > ce#1000.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.bam.cram.bam.sam_ .. ok test_view testing ce#2.sam, ref ce.fa: ./test_view -S -l0 -b ce#2.sam > ce#2.tmp.bam ./test_view ce#2.tmp.bam > ce#2.tmp.bam.sam_ ./compare_sam.pl ce#2.sam ce#2.tmp.bam.sam_ ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#2.sam > ce#2.tmp.cram ./test_view -D ce#2.tmp.cram > ce#2.tmp.cram.sam_ ./compare_sam.pl -nomd ce#2.sam ce#2.tmp.cram.sam_ ./test_view -t ce.fa -C -o VERSION=3.0 ce#2.tmp.bam > ce#2.tmp.bam.cram ./test_view ce#2.tmp.bam.cram > ce#2.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#2.sam ce#2.tmp.bam.cram.bam.sam_ .. ok test_view testing ce#5.sam, ref ce.fa: ./test_view -S -l0 -b ce#5.sam > ce#5.tmp.bam ./test_view ce#5.tmp.bam > ce#5.tmp.bam.sam_ ./compare_sam.pl ce#5.sam ce#5.tmp.bam.sam_ ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#5.sam > ce#5.tmp.cram ./test_view -D ce#5.tmp.cram > ce#5.tmp.cram.sam_ ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.cram.sam_ ./test_view -t ce.fa -C -o VERSION=3.0 ce#5.tmp.bam > ce#5.tmp.bam.cram ./test_view ce#5.tmp.bam.cram > ce#5.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.bam.cram.bam.sam_ .. ok test_view testing ce#5b.sam, ref ce.fa: ./test_view -S -l0 -b ce#5b.sam > ce#5b.tmp.bam ./test_view ce#5b.tmp.bam > ce#5b.tmp.bam.sam_ ./compare_sam.pl ce#5b.sam ce#5b.tmp.bam.sam_ ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#5b.sam > ce#5b.tmp.cram ./test_view -D ce#5b.tmp.cram > ce#5b.tmp.cram.sam_ ./compare_sam.pl -nomd ce#5b.sam ce#5b.tmp.cram.sam_ ./test_view -t ce.fa -C -o VERSION=3.0 ce#5b.tmp.bam > ce#5b.tmp.bam.cram ./test_view ce#5b.tmp.bam.cram > ce#5b.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#5b.sam ce#5b.tmp.bam.cram.bam.sam_ ./test_view -i reference=ce.fa ce#5b_java.cram > ce#5b_java.tmp.sam_ ./compare_sam.pl -Baux -nomd ce#5b.sam ce#5b_java.tmp.sam_ .. ok test_view testing ce#large_seq.sam, ref ce.fa: ./test_view -S -l0 -b ce#large_seq.sam > ce#large_seq.tmp.bam ./test_view ce#large_seq.tmp.bam > ce#large_seq.tmp.bam.sam_ ./compare_sam.pl ce#large_seq.sam ce#large_seq.tmp.bam.sam_ ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#large_seq.sam > ce#large_seq.tmp.cram ./test_view -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_ ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_ ./test_view -t ce.fa -C -o VERSION=3.0 ce#large_seq.tmp.bam > ce#large_seq.tmp.bam.cram ./test_view ce#large_seq.tmp.bam.cram > ce#large_seq.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.bam.cram.bam.sam_ .. ok test_view testing ce#supp.sam, ref ce.fa: ./test_view -S -l0 -b ce#supp.sam > ce#supp.tmp.bam ./test_view ce#supp.tmp.bam > ce#supp.tmp.bam.sam_ ./compare_sam.pl ce#supp.sam ce#supp.tmp.bam.sam_ ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#supp.sam > ce#supp.tmp.cram ./test_view -D ce#supp.tmp.cram > ce#supp.tmp.cram.sam_ ./compare_sam.pl -nomd ce#supp.sam ce#supp.tmp.cram.sam_ ./test_view -t ce.fa -C -o VERSION=3.0 ce#supp.tmp.bam > ce#supp.tmp.bam.cram ./test_view ce#supp.tmp.bam.cram > ce#supp.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#supp.sam ce#supp.tmp.bam.cram.bam.sam_ .. ok test_view testing ce#tag_depadded.sam, ref ce.fa: ./test_view -S -l0 -b ce#tag_depadded.sam > ce#tag_depadded.tmp.bam ./test_view ce#tag_depadded.tmp.bam > ce#tag_depadded.tmp.bam.sam_ ./compare_sam.pl ce#tag_depadded.sam ce#tag_depadded.tmp.bam.sam_ ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#tag_depadded.sam > ce#tag_depadded.tmp.cram ./test_view -D ce#tag_depadded.tmp.cram > ce#tag_depadded.tmp.cram.sam_ ./compare_sam.pl -nomd ce#tag_depadded.sam ce#tag_depadded.tmp.cram.sam_ ./test_view -t ce.fa -C -o VERSION=3.0 ce#tag_depadded.tmp.bam > ce#tag_depadded.tmp.bam.cram ./test_view ce#tag_depadded.tmp.bam.cram > ce#tag_depadded.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#tag_depadded.sam ce#tag_depadded.tmp.bam.cram.bam.sam_ .. ok test_view testing ce#tag_padded.sam, ref ce.fa: ./test_view -S -l0 -b ce#tag_padded.sam > ce#tag_padded.tmp.bam ./test_view ce#tag_padded.tmp.bam > ce#tag_padded.tmp.bam.sam_ ./compare_sam.pl ce#tag_padded.sam ce#tag_padded.tmp.bam.sam_ ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#tag_padded.sam > ce#tag_padded.tmp.cram ./test_view -D ce#tag_padded.tmp.cram > ce#tag_padded.tmp.cram.sam_ ./compare_sam.pl -nomd ce#tag_padded.sam ce#tag_padded.tmp.cram.sam_ ./test_view -t ce.fa -C -o VERSION=3.0 ce#tag_padded.tmp.bam > ce#tag_padded.tmp.bam.cram ./test_view ce#tag_padded.tmp.bam.cram > ce#tag_padded.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#tag_padded.sam ce#tag_padded.tmp.bam.cram.bam.sam_ .. ok test_view testing ce#unmap.sam, ref ce.fa: ./test_view -S -l0 -b ce#unmap.sam > ce#unmap.tmp.bam ./test_view ce#unmap.tmp.bam > ce#unmap.tmp.bam.sam_ ./compare_sam.pl ce#unmap.sam ce#unmap.tmp.bam.sam_ ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#unmap.sam > ce#unmap.tmp.cram ./test_view -D ce#unmap.tmp.cram > ce#unmap.tmp.cram.sam_ ./compare_sam.pl -nomd ce#unmap.sam ce#unmap.tmp.cram.sam_ ./test_view -t ce.fa -C -o VERSION=3.0 ce#unmap.tmp.bam > ce#unmap.tmp.bam.cram ./test_view ce#unmap.tmp.bam.cram > ce#unmap.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#unmap.sam ce#unmap.tmp.bam.cram.bam.sam_ .. ok test_view testing ce#unmap1.sam, ref ce.fa: ./test_view -S -l0 -b ce#unmap1.sam > ce#unmap1.tmp.bam ./test_view ce#unmap1.tmp.bam > ce#unmap1.tmp.bam.sam_ ./compare_sam.pl ce#unmap1.sam ce#unmap1.tmp.bam.sam_ ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#unmap1.sam > ce#unmap1.tmp.cram ./test_view -D ce#unmap1.tmp.cram > ce#unmap1.tmp.cram.sam_ ./compare_sam.pl -nomd ce#unmap1.sam ce#unmap1.tmp.cram.sam_ ./test_view -t ce.fa -C -o VERSION=3.0 ce#unmap1.tmp.bam > ce#unmap1.tmp.bam.cram ./test_view ce#unmap1.tmp.bam.cram > ce#unmap1.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#unmap1.sam ce#unmap1.tmp.bam.cram.bam.sam_ .. ok test_view testing ce#unmap2.sam, ref ce.fa: ./test_view -S -l0 -b ce#unmap2.sam > ce#unmap2.tmp.bam ./test_view ce#unmap2.tmp.bam > ce#unmap2.tmp.bam.sam_ ./compare_sam.pl ce#unmap2.sam ce#unmap2.tmp.bam.sam_ ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#unmap2.sam > ce#unmap2.tmp.cram ./test_view -D ce#unmap2.tmp.cram > ce#unmap2.tmp.cram.sam_ ./compare_sam.pl -nomd ce#unmap2.sam ce#unmap2.tmp.cram.sam_ ./test_view -t ce.fa -C -o VERSION=3.0 ce#unmap2.tmp.bam > ce#unmap2.tmp.bam.cram ./test_view ce#unmap2.tmp.bam.cram > ce#unmap2.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#unmap2.sam ce#unmap2.tmp.bam.cram.bam.sam_ .. ok test_view testing md#1.sam, ref md.fa: ./test_view -S -l0 -b md#1.sam > md#1.tmp.bam ./test_view md#1.tmp.bam > md#1.tmp.bam.sam_ ./compare_sam.pl md#1.sam md#1.tmp.bam.sam_ ./test_view -t md.fa -S -C -o VERSION=2.1 md#1.sam > md#1.tmp.cram ./test_view -D md#1.tmp.cram > md#1.tmp.cram.sam_ ./compare_sam.pl md#1.sam md#1.tmp.cram.sam_ ./test_view -t md.fa -C -o VERSION=3.0 md#1.tmp.bam > md#1.tmp.bam.cram ./test_view md#1.tmp.bam.cram > md#1.tmp.bam.cram.bam.sam_ ./compare_sam.pl md#1.sam md#1.tmp.bam.cram.bam.sam_ .. ok test_view testing xx#blank.sam, ref xx.fa: ./test_view -S -l0 -b xx#blank.sam > xx#blank.tmp.bam ./test_view xx#blank.tmp.bam > xx#blank.tmp.bam.sam_ ./compare_sam.pl xx#blank.sam xx#blank.tmp.bam.sam_ ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#blank.sam > xx#blank.tmp.cram ./test_view -D xx#blank.tmp.cram > xx#blank.tmp.cram.sam_ ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.cram.sam_ ./test_view -t xx.fa -C -o VERSION=3.0 xx#blank.tmp.bam > xx#blank.tmp.bam.cram ./test_view xx#blank.tmp.bam.cram > xx#blank.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.bam.cram.bam.sam_ .. ok test_view testing xx#large_aux.sam, ref xx.fa: ./test_view -S -l0 -b xx#large_aux.sam > xx#large_aux.tmp.bam ./test_view xx#large_aux.tmp.bam > xx#large_aux.tmp.bam.sam_ ./compare_sam.pl xx#large_aux.sam xx#large_aux.tmp.bam.sam_ ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#large_aux.sam > xx#large_aux.tmp.cram ./test_view -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_ ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_ ./test_view -t xx.fa -C -o VERSION=3.0 xx#large_aux.tmp.bam > xx#large_aux.tmp.bam.cram ./test_view xx#large_aux.tmp.bam.cram > xx#large_aux.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.bam.cram.bam.sam_ ./test_view -i reference=xx.fa xx#large_aux_java.cram > xx#large_aux_java.tmp.sam_ [W::sanitise_SQ_lines] Header @SQ length mismatch for ref xx, 30 vs 20 ./compare_sam.pl -Baux -nomd xx#large_aux.sam xx#large_aux_java.tmp.sam_ .. ok test_view testing xx#large_aux2.sam, ref xx.fa: ./test_view -S -l0 -b xx#large_aux2.sam > xx#large_aux2.tmp.bam ./test_view xx#large_aux2.tmp.bam > xx#large_aux2.tmp.bam.sam_ ./compare_sam.pl xx#large_aux2.sam xx#large_aux2.tmp.bam.sam_ ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#large_aux2.sam > xx#large_aux2.tmp.cram ./test_view -D xx#large_aux2.tmp.cram > xx#large_aux2.tmp.cram.sam_ ./compare_sam.pl -nomd xx#large_aux2.sam xx#large_aux2.tmp.cram.sam_ ./test_view -t xx.fa -C -o VERSION=3.0 xx#large_aux2.tmp.bam > xx#large_aux2.tmp.bam.cram ./test_view xx#large_aux2.tmp.bam.cram > xx#large_aux2.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#large_aux2.sam xx#large_aux2.tmp.bam.cram.bam.sam_ .. ok test_view testing xx#MD.sam, ref xx.fa: ./test_view -S -l0 -b xx#MD.sam > xx#MD.tmp.bam ./test_view xx#MD.tmp.bam > xx#MD.tmp.bam.sam_ ./compare_sam.pl xx#MD.sam xx#MD.tmp.bam.sam_ ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#MD.sam > xx#MD.tmp.cram ./test_view -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_ ./compare_sam.pl -nomd xx#MD.sam xx#MD.tmp.cram.sam_ ./test_view -t xx.fa -C -o VERSION=3.0 xx#MD.tmp.bam > xx#MD.tmp.bam.cram ./test_view xx#MD.tmp.bam.cram > xx#MD.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#MD.sam xx#MD.tmp.bam.cram.bam.sam_ .. ok test_view testing xx#MD2.sam, ref xx.fa: ./test_view -S -l0 -b xx#MD2.sam > xx#MD2.tmp.bam ./test_view xx#MD2.tmp.bam > xx#MD2.tmp.bam.sam_ ./compare_sam.pl xx#MD2.sam xx#MD2.tmp.bam.sam_ ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#MD2.sam > xx#MD2.tmp.cram ./test_view -D xx#MD2.tmp.cram > xx#MD2.tmp.cram.sam_ ./compare_sam.pl -nomd xx#MD2.sam xx#MD2.tmp.cram.sam_ ./test_view -t xx.fa -C -o VERSION=3.0 xx#MD2.tmp.bam > xx#MD2.tmp.bam.cram ./test_view xx#MD2.tmp.bam.cram > xx#MD2.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#MD2.sam xx#MD2.tmp.bam.cram.bam.sam_ .. ok test_view testing xx#minimal.sam, ref xx.fa: ./test_view -S -l0 -b xx#minimal.sam > xx#minimal.tmp.bam ./test_view xx#minimal.tmp.bam > xx#minimal.tmp.bam.sam_ ./compare_sam.pl xx#minimal.sam xx#minimal.tmp.bam.sam_ ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#minimal.sam > xx#minimal.tmp.cram ./test_view -D xx#minimal.tmp.cram > xx#minimal.tmp.cram.sam_ ./compare_sam.pl -nomd xx#minimal.sam xx#minimal.tmp.cram.sam_ ./test_view -t xx.fa -C -o VERSION=3.0 xx#minimal.tmp.bam > xx#minimal.tmp.bam.cram ./test_view xx#minimal.tmp.bam.cram > xx#minimal.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#minimal.sam xx#minimal.tmp.bam.cram.bam.sam_ .. ok test_view testing xx#pair.sam, ref xx.fa: ./test_view -S -l0 -b xx#pair.sam > xx#pair.tmp.bam ./test_view xx#pair.tmp.bam > xx#pair.tmp.bam.sam_ ./compare_sam.pl xx#pair.sam xx#pair.tmp.bam.sam_ ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#pair.sam > xx#pair.tmp.cram ./test_view -D xx#pair.tmp.cram > xx#pair.tmp.cram.sam_ ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.cram.sam_ ./test_view -t xx.fa -C -o VERSION=3.0 xx#pair.tmp.bam > xx#pair.tmp.bam.cram ./test_view xx#pair.tmp.bam.cram > xx#pair.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.bam.cram.bam.sam_ .. ok test_view testing xx#repeated.sam, ref xx.fa: ./test_view -S -l0 -b xx#repeated.sam > xx#repeated.tmp.bam ./test_view xx#repeated.tmp.bam > xx#repeated.tmp.bam.sam_ ./compare_sam.pl xx#repeated.sam xx#repeated.tmp.bam.sam_ ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#repeated.sam > xx#repeated.tmp.cram ./test_view -D xx#repeated.tmp.cram > xx#repeated.tmp.cram.sam_ ./compare_sam.pl -nomd xx#repeated.sam xx#repeated.tmp.cram.sam_ ./test_view -t xx.fa -C -o VERSION=3.0 xx#repeated.tmp.bam > xx#repeated.tmp.bam.cram ./test_view xx#repeated.tmp.bam.cram > xx#repeated.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#repeated.sam xx#repeated.tmp.bam.cram.bam.sam_ .. ok test_view testing xx#rg.sam, ref xx.fa: ./test_view -S -l0 -b xx#rg.sam > xx#rg.tmp.bam ./test_view xx#rg.tmp.bam > xx#rg.tmp.bam.sam_ ./compare_sam.pl xx#rg.sam xx#rg.tmp.bam.sam_ ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#rg.sam > xx#rg.tmp.cram ./test_view -D xx#rg.tmp.cram > xx#rg.tmp.cram.sam_ ./compare_sam.pl -nomd xx#rg.sam xx#rg.tmp.cram.sam_ ./test_view -t xx.fa -C -o VERSION=3.0 xx#rg.tmp.bam > xx#rg.tmp.bam.cram ./test_view xx#rg.tmp.bam.cram > xx#rg.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#rg.sam xx#rg.tmp.bam.cram.bam.sam_ .. ok test_view testing xx#tlen.sam, ref xx.fa: ./test_view -S -l0 -b xx#tlen.sam > xx#tlen.tmp.bam ./test_view xx#tlen.tmp.bam > xx#tlen.tmp.bam.sam_ ./compare_sam.pl xx#tlen.sam xx#tlen.tmp.bam.sam_ ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#tlen.sam > xx#tlen.tmp.cram ./test_view -D xx#tlen.tmp.cram > xx#tlen.tmp.cram.sam_ ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.cram.sam_ ./test_view -t xx.fa -C -o VERSION=3.0 xx#tlen.tmp.bam > xx#tlen.tmp.bam.cram ./test_view xx#tlen.tmp.bam.cram > xx#tlen.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.bam.cram.bam.sam_ .. ok test_view testing xx#tlen2.sam, ref xx.fa: ./test_view -S -l0 -b xx#tlen2.sam > xx#tlen2.tmp.bam ./test_view xx#tlen2.tmp.bam > xx#tlen2.tmp.bam.sam_ ./compare_sam.pl xx#tlen2.sam xx#tlen2.tmp.bam.sam_ ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#tlen2.sam > xx#tlen2.tmp.cram ./test_view -D xx#tlen2.tmp.cram > xx#tlen2.tmp.cram.sam_ ./compare_sam.pl -nomd xx#tlen2.sam xx#tlen2.tmp.cram.sam_ ./test_view -t xx.fa -C -o VERSION=3.0 xx#tlen2.tmp.bam > xx#tlen2.tmp.bam.cram ./test_view xx#tlen2.tmp.bam.cram > xx#tlen2.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#tlen2.sam xx#tlen2.tmp.bam.cram.bam.sam_ .. ok test_view testing xx#triplet.sam, ref xx.fa: ./test_view -S -l0 -b xx#triplet.sam > xx#triplet.tmp.bam ./test_view xx#triplet.tmp.bam > xx#triplet.tmp.bam.sam_ ./compare_sam.pl xx#triplet.sam xx#triplet.tmp.bam.sam_ ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#triplet.sam > xx#triplet.tmp.cram ./test_view -D xx#triplet.tmp.cram > xx#triplet.tmp.cram.sam_ ./compare_sam.pl -nomd xx#triplet.sam xx#triplet.tmp.cram.sam_ ./test_view -t xx.fa -C -o VERSION=3.0 xx#triplet.tmp.bam > xx#triplet.tmp.bam.cram ./test_view xx#triplet.tmp.bam.cram > xx#triplet.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#triplet.sam xx#triplet.tmp.bam.cram.bam.sam_ .. ok test_view testing xx#unsorted.sam, ref xx.fa: ./test_view -S -l0 -b xx#unsorted.sam > xx#unsorted.tmp.bam ./test_view xx#unsorted.tmp.bam > xx#unsorted.tmp.bam.sam_ ./compare_sam.pl xx#unsorted.sam xx#unsorted.tmp.bam.sam_ ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#unsorted.sam > xx#unsorted.tmp.cram ./test_view -D xx#unsorted.tmp.cram > xx#unsorted.tmp.cram.sam_ ./compare_sam.pl -nomd xx#unsorted.sam xx#unsorted.tmp.cram.sam_ ./test_view -t xx.fa -C -o VERSION=3.0 xx#unsorted.tmp.bam > xx#unsorted.tmp.bam.cram ./test_view xx#unsorted.tmp.bam.cram > xx#unsorted.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#unsorted.sam xx#unsorted.tmp.bam.cram.bam.sam_ .. ok test_view testing region queries: ./test_view -i reference=ce.fa range.cram CHROMOSOME_II:2980-2980 CHROMOSOME_IV:1500-1500 CHROMOSOME_II:2980-2980 CHROMOSOME_I:1000-1100 > range.tmp ./compare_sam.pl range.tmp range.out ./test_view range.bam CHROMOSOME_II:2980-2980 CHROMOSOME_IV:1500-1500 CHROMOSOME_II:2980-2980 CHROMOSOME_I:1000-1100 > range.tmp ./compare_sam.pl range.tmp range.out .. ok test_view testing BAM files with absent @SQ lines: ./test_view -p no_hdr_sq_1.tmp.sam no_hdr_sq_1.bam ./compare_sam.pl no_hdr_sq_1.tmp.sam no_hdr_sq_1.expected.sam ./test_view -p no_hdr_sq_1.chr1.tmp.sam no_hdr_sq_1.bam CHROMOSOME_I ./compare_sam.pl no_hdr_sq_1.chr1.tmp.sam no_hdr_sq_1.expected.sam .. ok test_view testing large (> 2Gbases) positions: ./test_view -z -p longrefs/longref.tmp.sam.gz -x longrefs/longref.tmp.sam.gz.csi.otf -m 14 longrefs/longref.sam ./test_view -p longrefs/longref.tmp.sam_ longrefs/longref.tmp.sam.gz ./compare_sam.pl longrefs/longref.sam longrefs/longref.tmp.sam_ test_view: /builddir/build/BUILD/htslib-1.15.1/test/test_index -c longrefs/longref.tmp.sam.gz .. ok ./test_view -p longrefs/longref_itr.tmp.sam longrefs/longref.tmp.sam.gz CHROMOSOME_I:10000000000-10000000003 ./compare_sam.pl longrefs/longref_itr.expected.sam longrefs/longref_itr.tmp.sam ./test_view -M -p longrefs/longref_multi.tmp.sam longrefs/longref.tmp.sam.gz CHROMOSOME_I:10000000000-10000000003 CHROMOSOME_I:10000000100-10000000110 ./compare_sam.pl longrefs/longref_multi.expected.sam longrefs/longref_multi.tmp.sam .. ok test_view testing auxf#values.sam, ref auxf.fa: ./test_view -@4 -S -l0 -b auxf#values.sam > auxf#values.tmp.bam ./test_view -@4 auxf#values.tmp.bam > auxf#values.tmp.bam.sam_ ./compare_sam.pl auxf#values.sam auxf#values.tmp.bam.sam_ ./test_view -@4 -t auxf.fa -S -C -o VERSION=2.1 auxf#values.sam > auxf#values.tmp.cram ./test_view -@4 -D auxf#values.tmp.cram > auxf#values.tmp.cram.sam_ ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.cram.sam_ ./test_view -@4 -t auxf.fa -C -o VERSION=3.0 auxf#values.tmp.bam > auxf#values.tmp.bam.cram ./test_view -@4 auxf#values.tmp.bam.cram > auxf#values.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.bam.cram.bam.sam_ ./test_view -@4 -t auxf.fa -S -l7 -C -o VERSION=3.1 -o archive auxf#values.sam > auxf#values.tmp.cram [W::cram_set_voption] CRAM version 3.1 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D auxf#values.tmp.cram > auxf#values.tmp.cram.sam_ ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.cram.sam_ ./test_view -@4 -t auxf.fa -S -l7 -C -o VERSION=4.0 -o archive auxf#values.sam > auxf#values.tmp.cram [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D auxf#values.tmp.cram > auxf#values.tmp.cram.sam_ ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.cram.sam_ ./test_view -@4 -i reference=auxf.fa auxf#values_java.cram > auxf#values_java.tmp.sam_ ./compare_sam.pl -Baux -nomd auxf#values.sam auxf#values_java.tmp.sam_ .. ok test_view testing c1#bounds.sam, ref c1.fa: ./test_view -@4 -S -l0 -b c1#bounds.sam > c1#bounds.tmp.bam ./test_view -@4 c1#bounds.tmp.bam > c1#bounds.tmp.bam.sam_ ./compare_sam.pl c1#bounds.sam c1#bounds.tmp.bam.sam_ ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#bounds.sam > c1#bounds.tmp.cram ./test_view -@4 -D c1#bounds.tmp.cram > c1#bounds.tmp.cram.sam_ ./compare_sam.pl -nomd c1#bounds.sam c1#bounds.tmp.cram.sam_ ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#bounds.tmp.bam > c1#bounds.tmp.bam.cram ./test_view -@4 c1#bounds.tmp.bam.cram > c1#bounds.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#bounds.sam c1#bounds.tmp.bam.cram.bam.sam_ .. ok test_view testing c1#clip.sam, ref c1.fa: ./test_view -@4 -S -l0 -b c1#clip.sam > c1#clip.tmp.bam ./test_view -@4 c1#clip.tmp.bam > c1#clip.tmp.bam.sam_ ./compare_sam.pl c1#clip.sam c1#clip.tmp.bam.sam_ ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#clip.sam > c1#clip.tmp.cram ./test_view -@4 -D c1#clip.tmp.cram > c1#clip.tmp.cram.sam_ ./compare_sam.pl -nomd c1#clip.sam c1#clip.tmp.cram.sam_ ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#clip.tmp.bam > c1#clip.tmp.bam.cram ./test_view -@4 c1#clip.tmp.bam.cram > c1#clip.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#clip.sam c1#clip.tmp.bam.cram.bam.sam_ .. ok test_view testing c1#noseq.sam, ref c1.fa: ./test_view -@4 -S -l0 -b c1#noseq.sam > c1#noseq.tmp.bam ./test_view -@4 c1#noseq.tmp.bam > c1#noseq.tmp.bam.sam_ ./compare_sam.pl c1#noseq.sam c1#noseq.tmp.bam.sam_ ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#noseq.sam > c1#noseq.tmp.cram ./test_view -@4 -D c1#noseq.tmp.cram > c1#noseq.tmp.cram.sam_ ./compare_sam.pl -nomd c1#noseq.sam c1#noseq.tmp.cram.sam_ ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#noseq.tmp.bam > c1#noseq.tmp.bam.cram ./test_view -@4 c1#noseq.tmp.bam.cram > c1#noseq.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#noseq.sam c1#noseq.tmp.bam.cram.bam.sam_ .. ok test_view testing c1#pad1.sam, ref c1.fa: ./test_view -@4 -S -l0 -b c1#pad1.sam > c1#pad1.tmp.bam ./test_view -@4 c1#pad1.tmp.bam > c1#pad1.tmp.bam.sam_ ./compare_sam.pl c1#pad1.sam c1#pad1.tmp.bam.sam_ ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#pad1.sam > c1#pad1.tmp.cram ./test_view -@4 -D c1#pad1.tmp.cram > c1#pad1.tmp.cram.sam_ ./compare_sam.pl -nomd c1#pad1.sam c1#pad1.tmp.cram.sam_ ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#pad1.tmp.bam > c1#pad1.tmp.bam.cram ./test_view -@4 c1#pad1.tmp.bam.cram > c1#pad1.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#pad1.sam c1#pad1.tmp.bam.cram.bam.sam_ .. ok test_view testing c1#pad2.sam, ref c1.fa: ./test_view -@4 -S -l0 -b c1#pad2.sam > c1#pad2.tmp.bam ./test_view -@4 c1#pad2.tmp.bam > c1#pad2.tmp.bam.sam_ ./compare_sam.pl c1#pad2.sam c1#pad2.tmp.bam.sam_ ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#pad2.sam > c1#pad2.tmp.cram ./test_view -@4 -D c1#pad2.tmp.cram > c1#pad2.tmp.cram.sam_ ./compare_sam.pl -nomd c1#pad2.sam c1#pad2.tmp.cram.sam_ ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#pad2.tmp.bam > c1#pad2.tmp.bam.cram ./test_view -@4 c1#pad2.tmp.bam.cram > c1#pad2.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#pad2.sam c1#pad2.tmp.bam.cram.bam.sam_ .. ok test_view testing c1#pad3.sam, ref c1.fa: ./test_view -@4 -S -l0 -b c1#pad3.sam > c1#pad3.tmp.bam ./test_view -@4 c1#pad3.tmp.bam > c1#pad3.tmp.bam.sam_ ./compare_sam.pl c1#pad3.sam c1#pad3.tmp.bam.sam_ ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#pad3.sam > c1#pad3.tmp.cram ./test_view -@4 -D c1#pad3.tmp.cram > c1#pad3.tmp.cram.sam_ ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.cram.sam_ ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#pad3.tmp.bam > c1#pad3.tmp.bam.cram ./test_view -@4 c1#pad3.tmp.bam.cram > c1#pad3.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.bam.cram.bam.sam_ ./test_view -@4 -t c1.fa -S -l7 -C -o VERSION=3.1 -o archive c1#pad3.sam > c1#pad3.tmp.cram [W::cram_set_voption] CRAM version 3.1 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D c1#pad3.tmp.cram > c1#pad3.tmp.cram.sam_ ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.cram.sam_ ./test_view -@4 -t c1.fa -S -l7 -C -o VERSION=4.0 -o archive c1#pad3.sam > c1#pad3.tmp.cram [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D c1#pad3.tmp.cram > c1#pad3.tmp.cram.sam_ ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.cram.sam_ .. ok test_view testing c1#unknown.sam, ref c1.fa: ./test_view -@4 -S -l0 -b c1#unknown.sam > c1#unknown.tmp.bam ./test_view -@4 c1#unknown.tmp.bam > c1#unknown.tmp.bam.sam_ ./compare_sam.pl c1#unknown.sam c1#unknown.tmp.bam.sam_ ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#unknown.sam > c1#unknown.tmp.cram ./test_view -@4 -D c1#unknown.tmp.cram > c1#unknown.tmp.cram.sam_ ./compare_sam.pl -nomd c1#unknown.sam c1#unknown.tmp.cram.sam_ ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#unknown.tmp.bam > c1#unknown.tmp.bam.cram ./test_view -@4 c1#unknown.tmp.bam.cram > c1#unknown.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c1#unknown.sam c1#unknown.tmp.bam.cram.bam.sam_ .. ok test_view testing c2#pad.sam, ref c2.fa: ./test_view -@4 -S -l0 -b c2#pad.sam > c2#pad.tmp.bam ./test_view -@4 c2#pad.tmp.bam > c2#pad.tmp.bam.sam_ ./compare_sam.pl c2#pad.sam c2#pad.tmp.bam.sam_ ./test_view -@4 -t c2.fa -S -C -o VERSION=2.1 c2#pad.sam > c2#pad.tmp.cram ./test_view -@4 -D c2#pad.tmp.cram > c2#pad.tmp.cram.sam_ ./compare_sam.pl -nomd c2#pad.sam c2#pad.tmp.cram.sam_ ./test_view -@4 -t c2.fa -C -o VERSION=3.0 c2#pad.tmp.bam > c2#pad.tmp.bam.cram ./test_view -@4 c2#pad.tmp.bam.cram > c2#pad.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd c2#pad.sam c2#pad.tmp.bam.cram.bam.sam_ .. ok test_view testing ce#1.sam, ref ce.fa: ./test_view -@4 -S -l0 -b ce#1.sam > ce#1.tmp.bam ./test_view -@4 ce#1.tmp.bam > ce#1.tmp.bam.sam_ ./compare_sam.pl ce#1.sam ce#1.tmp.bam.sam_ ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#1.sam > ce#1.tmp.cram ./test_view -@4 -D ce#1.tmp.cram > ce#1.tmp.cram.sam_ ./compare_sam.pl -nomd ce#1.sam ce#1.tmp.cram.sam_ ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#1.tmp.bam > ce#1.tmp.bam.cram ./test_view -@4 ce#1.tmp.bam.cram > ce#1.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#1.sam ce#1.tmp.bam.cram.bam.sam_ .. ok test_view testing ce#1000.sam, ref ce.fa: ./test_view -@4 -S -b ce#1000.sam > ce#1000.tmp.bam ./test_view -@4 ce#1000.tmp.bam > ce#1000.tmp.bam.sam_ ./compare_sam.pl ce#1000.sam ce#1000.tmp.bam.sam_ ./test_view -@4 -S -l0 -b ce#1000.sam > ce#1000.tmp.bam ./test_view -@4 ce#1000.tmp.bam > ce#1000.tmp.bam.sam_ ./compare_sam.pl ce#1000.sam ce#1000.tmp.bam.sam_ ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#1000.sam > ce#1000.tmp.cram ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_ ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_ ./test_view -@4 -t ce.fa -S -l0 -C -o VERSION=3.0 ce#1000.sam > ce#1000.tmp.cram ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_ ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_ ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#1000.tmp.bam > ce#1000.tmp.bam.cram ./test_view -@4 ce#1000.tmp.bam.cram > ce#1000.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.bam.cram.bam.sam_ ./test_view -@4 -t ce.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 ce#1000.tmp.bam.cram > ce#1000.tmp.bam.cram.ms ./test_view -@4 ce#1000.tmp.bam.cram.ms > ce#1000.tmp.bam.cram.sam_ ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.bam.cram.sam_ ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o fast ce#1000.sam > ce#1000.tmp.cram [W::cram_set_voption] CRAM version 3.1 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_ ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_ ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o normal ce#1000.sam > ce#1000.tmp.cram [W::cram_set_voption] CRAM version 3.1 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_ ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_ ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o small ce#1000.sam > ce#1000.tmp.cram [W::cram_set_voption] CRAM version 3.1 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_ ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_ ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o archive ce#1000.sam > ce#1000.tmp.cram [W::cram_set_voption] CRAM version 3.1 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_ ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_ ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o archive ce#1000.sam > ce#1000.tmp.cram [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_ ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_ .. ok test_view testing ce#2.sam, ref ce.fa: ./test_view -@4 -S -l0 -b ce#2.sam > ce#2.tmp.bam ./test_view -@4 ce#2.tmp.bam > ce#2.tmp.bam.sam_ ./compare_sam.pl ce#2.sam ce#2.tmp.bam.sam_ ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#2.sam > ce#2.tmp.cram ./test_view -@4 -D ce#2.tmp.cram > ce#2.tmp.cram.sam_ ./compare_sam.pl -nomd ce#2.sam ce#2.tmp.cram.sam_ ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#2.tmp.bam > ce#2.tmp.bam.cram ./test_view -@4 ce#2.tmp.bam.cram > ce#2.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#2.sam ce#2.tmp.bam.cram.bam.sam_ .. ok test_view testing ce#5.sam, ref ce.fa: ./test_view -@4 -S -l0 -b ce#5.sam > ce#5.tmp.bam ./test_view -@4 ce#5.tmp.bam > ce#5.tmp.bam.sam_ ./compare_sam.pl ce#5.sam ce#5.tmp.bam.sam_ ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#5.sam > ce#5.tmp.cram ./test_view -@4 -D ce#5.tmp.cram > ce#5.tmp.cram.sam_ ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.cram.sam_ ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#5.tmp.bam > ce#5.tmp.bam.cram ./test_view -@4 ce#5.tmp.bam.cram > ce#5.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.bam.cram.bam.sam_ ./test_view -@4 -t ce.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 ce#5.tmp.bam.cram > ce#5.tmp.bam.cram.ms ./test_view -@4 ce#5.tmp.bam.cram.ms > ce#5.tmp.bam.cram.sam_ ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.bam.cram.sam_ ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o archive ce#5.sam > ce#5.tmp.cram [W::cram_set_voption] CRAM version 3.1 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D ce#5.tmp.cram > ce#5.tmp.cram.sam_ ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.cram.sam_ ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o archive ce#5.sam > ce#5.tmp.cram [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D ce#5.tmp.cram > ce#5.tmp.cram.sam_ ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.cram.sam_ .. ok test_view testing ce#5b.sam, ref ce.fa: ./test_view -@4 -S -l0 -b ce#5b.sam > ce#5b.tmp.bam ./test_view -@4 ce#5b.tmp.bam > ce#5b.tmp.bam.sam_ ./compare_sam.pl ce#5b.sam ce#5b.tmp.bam.sam_ ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#5b.sam > ce#5b.tmp.cram ./test_view -@4 -D ce#5b.tmp.cram > ce#5b.tmp.cram.sam_ ./compare_sam.pl -nomd ce#5b.sam ce#5b.tmp.cram.sam_ ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#5b.tmp.bam > ce#5b.tmp.bam.cram ./test_view -@4 ce#5b.tmp.bam.cram > ce#5b.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#5b.sam ce#5b.tmp.bam.cram.bam.sam_ ./test_view -@4 -t ce.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 ce#5b.tmp.bam.cram > ce#5b.tmp.bam.cram.ms ./test_view -@4 ce#5b.tmp.bam.cram.ms > ce#5b.tmp.bam.cram.sam_ ./compare_sam.pl -nomd ce#5b.sam ce#5b.tmp.bam.cram.sam_ ./test_view -@4 -i reference=ce.fa ce#5b_java.cram > ce#5b_java.tmp.sam_ ./compare_sam.pl -Baux -nomd ce#5b.sam ce#5b_java.tmp.sam_ .. ok test_view testing ce#large_seq.sam, ref ce.fa: ./test_view -@4 -S -l0 -b ce#large_seq.sam > ce#large_seq.tmp.bam ./test_view -@4 ce#large_seq.tmp.bam > ce#large_seq.tmp.bam.sam_ ./compare_sam.pl ce#large_seq.sam ce#large_seq.tmp.bam.sam_ ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#large_seq.sam > ce#large_seq.tmp.cram ./test_view -@4 -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_ ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_ ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#large_seq.tmp.bam > ce#large_seq.tmp.bam.cram ./test_view -@4 ce#large_seq.tmp.bam.cram > ce#large_seq.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.bam.cram.bam.sam_ ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o archive ce#large_seq.sam > ce#large_seq.tmp.cram [W::cram_set_voption] CRAM version 3.1 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_ ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_ ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o fast ce#large_seq.sam > ce#large_seq.tmp.cram [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_ ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_ ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o normal ce#large_seq.sam > ce#large_seq.tmp.cram [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_ ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_ ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o small ce#large_seq.sam > ce#large_seq.tmp.cram [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_ ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_ ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o archive ce#large_seq.sam > ce#large_seq.tmp.cram [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_ ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_ .. ok test_view testing ce#supp.sam, ref ce.fa: ./test_view -@4 -S -l0 -b ce#supp.sam > ce#supp.tmp.bam ./test_view -@4 ce#supp.tmp.bam > ce#supp.tmp.bam.sam_ ./compare_sam.pl ce#supp.sam ce#supp.tmp.bam.sam_ ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#supp.sam > ce#supp.tmp.cram ./test_view -@4 -D ce#supp.tmp.cram > ce#supp.tmp.cram.sam_ ./compare_sam.pl -nomd ce#supp.sam ce#supp.tmp.cram.sam_ ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#supp.tmp.bam > ce#supp.tmp.bam.cram ./test_view -@4 ce#supp.tmp.bam.cram > ce#supp.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#supp.sam ce#supp.tmp.bam.cram.bam.sam_ ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o archive ce#supp.sam > ce#supp.tmp.cram [W::cram_set_voption] CRAM version 3.1 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D ce#supp.tmp.cram > ce#supp.tmp.cram.sam_ ./compare_sam.pl -nomd ce#supp.sam ce#supp.tmp.cram.sam_ ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o archive ce#supp.sam > ce#supp.tmp.cram [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D ce#supp.tmp.cram > ce#supp.tmp.cram.sam_ ./compare_sam.pl -nomd ce#supp.sam ce#supp.tmp.cram.sam_ .. ok test_view testing ce#tag_depadded.sam, ref ce.fa: ./test_view -@4 -S -l0 -b ce#tag_depadded.sam > ce#tag_depadded.tmp.bam ./test_view -@4 ce#tag_depadded.tmp.bam > ce#tag_depadded.tmp.bam.sam_ ./compare_sam.pl ce#tag_depadded.sam ce#tag_depadded.tmp.bam.sam_ ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#tag_depadded.sam > ce#tag_depadded.tmp.cram ./test_view -@4 -D ce#tag_depadded.tmp.cram > ce#tag_depadded.tmp.cram.sam_ ./compare_sam.pl -nomd ce#tag_depadded.sam ce#tag_depadded.tmp.cram.sam_ ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#tag_depadded.tmp.bam > ce#tag_depadded.tmp.bam.cram ./test_view -@4 ce#tag_depadded.tmp.bam.cram > ce#tag_depadded.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#tag_depadded.sam ce#tag_depadded.tmp.bam.cram.bam.sam_ .. ok test_view testing ce#tag_padded.sam, ref ce.fa: ./test_view -@4 -S -l0 -b ce#tag_padded.sam > ce#tag_padded.tmp.bam ./test_view -@4 ce#tag_padded.tmp.bam > ce#tag_padded.tmp.bam.sam_ ./compare_sam.pl ce#tag_padded.sam ce#tag_padded.tmp.bam.sam_ ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#tag_padded.sam > ce#tag_padded.tmp.cram ./test_view -@4 -D ce#tag_padded.tmp.cram > ce#tag_padded.tmp.cram.sam_ ./compare_sam.pl -nomd ce#tag_padded.sam ce#tag_padded.tmp.cram.sam_ ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#tag_padded.tmp.bam > ce#tag_padded.tmp.bam.cram ./test_view -@4 ce#tag_padded.tmp.bam.cram > ce#tag_padded.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#tag_padded.sam ce#tag_padded.tmp.bam.cram.bam.sam_ .. ok test_view testing ce#unmap.sam, ref ce.fa: ./test_view -@4 -S -l0 -b ce#unmap.sam > ce#unmap.tmp.bam ./test_view -@4 ce#unmap.tmp.bam > ce#unmap.tmp.bam.sam_ ./compare_sam.pl ce#unmap.sam ce#unmap.tmp.bam.sam_ ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#unmap.sam > ce#unmap.tmp.cram ./test_view -@4 -D ce#unmap.tmp.cram > ce#unmap.tmp.cram.sam_ ./compare_sam.pl -nomd ce#unmap.sam ce#unmap.tmp.cram.sam_ ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#unmap.tmp.bam > ce#unmap.tmp.bam.cram ./test_view -@4 ce#unmap.tmp.bam.cram > ce#unmap.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#unmap.sam ce#unmap.tmp.bam.cram.bam.sam_ ./test_view -@4 -t ce.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 ce#unmap.tmp.bam.cram > ce#unmap.tmp.bam.cram.ms ./test_view -@4 ce#unmap.tmp.bam.cram.ms > ce#unmap.tmp.bam.cram.sam_ ./compare_sam.pl -nomd ce#unmap.sam ce#unmap.tmp.bam.cram.sam_ .. ok test_view testing ce#unmap1.sam, ref ce.fa: ./test_view -@4 -S -l0 -b ce#unmap1.sam > ce#unmap1.tmp.bam ./test_view -@4 ce#unmap1.tmp.bam > ce#unmap1.tmp.bam.sam_ ./compare_sam.pl ce#unmap1.sam ce#unmap1.tmp.bam.sam_ ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#unmap1.sam > ce#unmap1.tmp.cram ./test_view -@4 -D ce#unmap1.tmp.cram > ce#unmap1.tmp.cram.sam_ ./compare_sam.pl -nomd ce#unmap1.sam ce#unmap1.tmp.cram.sam_ ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#unmap1.tmp.bam > ce#unmap1.tmp.bam.cram ./test_view -@4 ce#unmap1.tmp.bam.cram > ce#unmap1.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#unmap1.sam ce#unmap1.tmp.bam.cram.bam.sam_ ./test_view -@4 -t ce.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 ce#unmap1.tmp.bam.cram > ce#unmap1.tmp.bam.cram.ms ./test_view -@4 ce#unmap1.tmp.bam.cram.ms > ce#unmap1.tmp.bam.cram.sam_ ./compare_sam.pl -nomd ce#unmap1.sam ce#unmap1.tmp.bam.cram.sam_ .. ok test_view testing ce#unmap2.sam, ref ce.fa: ./test_view -@4 -S -l0 -b ce#unmap2.sam > ce#unmap2.tmp.bam ./test_view -@4 ce#unmap2.tmp.bam > ce#unmap2.tmp.bam.sam_ ./compare_sam.pl ce#unmap2.sam ce#unmap2.tmp.bam.sam_ ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#unmap2.sam > ce#unmap2.tmp.cram ./test_view -@4 -D ce#unmap2.tmp.cram > ce#unmap2.tmp.cram.sam_ ./compare_sam.pl -nomd ce#unmap2.sam ce#unmap2.tmp.cram.sam_ ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#unmap2.tmp.bam > ce#unmap2.tmp.bam.cram ./test_view -@4 ce#unmap2.tmp.bam.cram > ce#unmap2.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd ce#unmap2.sam ce#unmap2.tmp.bam.cram.bam.sam_ ./test_view -@4 -t ce.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 ce#unmap2.tmp.bam.cram > ce#unmap2.tmp.bam.cram.ms ./test_view -@4 ce#unmap2.tmp.bam.cram.ms > ce#unmap2.tmp.bam.cram.sam_ ./compare_sam.pl -nomd ce#unmap2.sam ce#unmap2.tmp.bam.cram.sam_ .. ok test_view testing md#1.sam, ref md.fa: ./test_view -@4 -S -l0 -b md#1.sam > md#1.tmp.bam ./test_view -@4 md#1.tmp.bam > md#1.tmp.bam.sam_ ./compare_sam.pl md#1.sam md#1.tmp.bam.sam_ ./test_view -@4 -t md.fa -S -C -o VERSION=2.1 md#1.sam > md#1.tmp.cram ./test_view -@4 -D md#1.tmp.cram > md#1.tmp.cram.sam_ ./compare_sam.pl md#1.sam md#1.tmp.cram.sam_ ./test_view -@4 -t md.fa -C -o VERSION=3.0 md#1.tmp.bam > md#1.tmp.bam.cram ./test_view -@4 md#1.tmp.bam.cram > md#1.tmp.bam.cram.bam.sam_ ./compare_sam.pl md#1.sam md#1.tmp.bam.cram.bam.sam_ .. ok test_view testing xx#blank.sam, ref xx.fa: ./test_view -@4 -S -l0 -b xx#blank.sam > xx#blank.tmp.bam ./test_view -@4 xx#blank.tmp.bam > xx#blank.tmp.bam.sam_ ./compare_sam.pl xx#blank.sam xx#blank.tmp.bam.sam_ ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#blank.sam > xx#blank.tmp.cram ./test_view -@4 -D xx#blank.tmp.cram > xx#blank.tmp.cram.sam_ ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.cram.sam_ ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#blank.tmp.bam > xx#blank.tmp.bam.cram ./test_view -@4 xx#blank.tmp.bam.cram > xx#blank.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.bam.cram.bam.sam_ ./test_view -@4 -t xx.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 xx#blank.tmp.bam.cram > xx#blank.tmp.bam.cram.ms ./test_view -@4 xx#blank.tmp.bam.cram.ms > xx#blank.tmp.bam.cram.sam_ ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.bam.cram.sam_ ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=3.1 -o archive xx#blank.sam > xx#blank.tmp.cram [W::cram_set_voption] CRAM version 3.1 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D xx#blank.tmp.cram > xx#blank.tmp.cram.sam_ ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.cram.sam_ ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o archive xx#blank.sam > xx#blank.tmp.cram [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D xx#blank.tmp.cram > xx#blank.tmp.cram.sam_ ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.cram.sam_ .. ok test_view testing xx#large_aux.sam, ref xx.fa: ./test_view -@4 -S -l0 -b xx#large_aux.sam > xx#large_aux.tmp.bam ./test_view -@4 xx#large_aux.tmp.bam > xx#large_aux.tmp.bam.sam_ ./compare_sam.pl xx#large_aux.sam xx#large_aux.tmp.bam.sam_ ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#large_aux.sam > xx#large_aux.tmp.cram ./test_view -@4 -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_ ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_ ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#large_aux.tmp.bam > xx#large_aux.tmp.bam.cram ./test_view -@4 xx#large_aux.tmp.bam.cram > xx#large_aux.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.bam.cram.bam.sam_ ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=3.1 -o archive xx#large_aux.sam > xx#large_aux.tmp.cram [W::cram_set_voption] CRAM version 3.1 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_ ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_ ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o fast xx#large_aux.sam > xx#large_aux.tmp.cram [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_ ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_ ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o normal xx#large_aux.sam > xx#large_aux.tmp.cram [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_ ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_ ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o small xx#large_aux.sam > xx#large_aux.tmp.cram [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_ ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_ ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o archive xx#large_aux.sam > xx#large_aux.tmp.cram [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_ ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_ ./test_view -@4 -i reference=xx.fa xx#large_aux_java.cram > xx#large_aux_java.tmp.sam_ [W::sanitise_SQ_lines] Header @SQ length mismatch for ref xx, 30 vs 20 ./compare_sam.pl -Baux -nomd xx#large_aux.sam xx#large_aux_java.tmp.sam_ .. ok test_view testing xx#large_aux2.sam, ref xx.fa: ./test_view -@4 -S -l0 -b xx#large_aux2.sam > xx#large_aux2.tmp.bam ./test_view -@4 xx#large_aux2.tmp.bam > xx#large_aux2.tmp.bam.sam_ ./compare_sam.pl xx#large_aux2.sam xx#large_aux2.tmp.bam.sam_ ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#large_aux2.sam > xx#large_aux2.tmp.cram ./test_view -@4 -D xx#large_aux2.tmp.cram > xx#large_aux2.tmp.cram.sam_ ./compare_sam.pl -nomd xx#large_aux2.sam xx#large_aux2.tmp.cram.sam_ ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#large_aux2.tmp.bam > xx#large_aux2.tmp.bam.cram ./test_view -@4 xx#large_aux2.tmp.bam.cram > xx#large_aux2.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#large_aux2.sam xx#large_aux2.tmp.bam.cram.bam.sam_ .. ok test_view testing xx#MD.sam, ref xx.fa: ./test_view -@4 -S -l0 -b xx#MD.sam > xx#MD.tmp.bam ./test_view -@4 xx#MD.tmp.bam > xx#MD.tmp.bam.sam_ ./compare_sam.pl xx#MD.sam xx#MD.tmp.bam.sam_ ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#MD.sam > xx#MD.tmp.cram ./test_view -@4 -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_ ./compare_sam.pl -nomd xx#MD.sam xx#MD.tmp.cram.sam_ ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#MD.tmp.bam > xx#MD.tmp.bam.cram ./test_view -@4 xx#MD.tmp.bam.cram > xx#MD.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#MD.sam xx#MD.tmp.bam.cram.bam.sam_ ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=3.1 -o archive xx#MD.sam > xx#MD.tmp.cram [W::cram_set_voption] CRAM version 3.1 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_ ./compare_sam.pl -nomd xx#MD.sam xx#MD.tmp.cram.sam_ ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o archive xx#MD.sam > xx#MD.tmp.cram [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_ ./compare_sam.pl -nomd xx#MD.sam xx#MD.tmp.cram.sam_ .. ok test_view testing xx#MD2.sam, ref xx.fa: ./test_view -@4 -S -l0 -b xx#MD2.sam > xx#MD2.tmp.bam ./test_view -@4 xx#MD2.tmp.bam > xx#MD2.tmp.bam.sam_ ./compare_sam.pl xx#MD2.sam xx#MD2.tmp.bam.sam_ ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#MD2.sam > xx#MD2.tmp.cram ./test_view -@4 -D xx#MD2.tmp.cram > xx#MD2.tmp.cram.sam_ ./compare_sam.pl -nomd xx#MD2.sam xx#MD2.tmp.cram.sam_ ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#MD2.tmp.bam > xx#MD2.tmp.bam.cram ./test_view -@4 xx#MD2.tmp.bam.cram > xx#MD2.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#MD2.sam xx#MD2.tmp.bam.cram.bam.sam_ .. ok test_view testing xx#minimal.sam, ref xx.fa: ./test_view -@4 -S -l0 -b xx#minimal.sam > xx#minimal.tmp.bam ./test_view -@4 xx#minimal.tmp.bam > xx#minimal.tmp.bam.sam_ ./compare_sam.pl xx#minimal.sam xx#minimal.tmp.bam.sam_ ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#minimal.sam > xx#minimal.tmp.cram ./test_view -@4 -D xx#minimal.tmp.cram > xx#minimal.tmp.cram.sam_ ./compare_sam.pl -nomd xx#minimal.sam xx#minimal.tmp.cram.sam_ ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#minimal.tmp.bam > xx#minimal.tmp.bam.cram ./test_view -@4 xx#minimal.tmp.bam.cram > xx#minimal.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#minimal.sam xx#minimal.tmp.bam.cram.bam.sam_ ./test_view -@4 -t xx.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 xx#minimal.tmp.bam.cram > xx#minimal.tmp.bam.cram.ms ./test_view -@4 xx#minimal.tmp.bam.cram.ms > xx#minimal.tmp.bam.cram.sam_ ./compare_sam.pl -nomd xx#minimal.sam xx#minimal.tmp.bam.cram.sam_ .. ok test_view testing xx#pair.sam, ref xx.fa: ./test_view -@4 -S -l0 -b xx#pair.sam > xx#pair.tmp.bam ./test_view -@4 xx#pair.tmp.bam > xx#pair.tmp.bam.sam_ ./compare_sam.pl xx#pair.sam xx#pair.tmp.bam.sam_ ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#pair.sam > xx#pair.tmp.cram ./test_view -@4 -D xx#pair.tmp.cram > xx#pair.tmp.cram.sam_ ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.cram.sam_ ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#pair.tmp.bam > xx#pair.tmp.bam.cram ./test_view -@4 xx#pair.tmp.bam.cram > xx#pair.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.bam.cram.bam.sam_ ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=3.1 -o archive xx#pair.sam > xx#pair.tmp.cram [W::cram_set_voption] CRAM version 3.1 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D xx#pair.tmp.cram > xx#pair.tmp.cram.sam_ ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.cram.sam_ ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o archive xx#pair.sam > xx#pair.tmp.cram [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D xx#pair.tmp.cram > xx#pair.tmp.cram.sam_ ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.cram.sam_ .. ok test_view testing xx#repeated.sam, ref xx.fa: ./test_view -@4 -S -l0 -b xx#repeated.sam > xx#repeated.tmp.bam ./test_view -@4 xx#repeated.tmp.bam > xx#repeated.tmp.bam.sam_ ./compare_sam.pl xx#repeated.sam xx#repeated.tmp.bam.sam_ ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#repeated.sam > xx#repeated.tmp.cram ./test_view -@4 -D xx#repeated.tmp.cram > xx#repeated.tmp.cram.sam_ ./compare_sam.pl -nomd xx#repeated.sam xx#repeated.tmp.cram.sam_ ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#repeated.tmp.bam > xx#repeated.tmp.bam.cram ./test_view -@4 xx#repeated.tmp.bam.cram > xx#repeated.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#repeated.sam xx#repeated.tmp.bam.cram.bam.sam_ .. ok test_view testing xx#rg.sam, ref xx.fa: ./test_view -@4 -S -l0 -b xx#rg.sam > xx#rg.tmp.bam ./test_view -@4 xx#rg.tmp.bam > xx#rg.tmp.bam.sam_ ./compare_sam.pl xx#rg.sam xx#rg.tmp.bam.sam_ ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#rg.sam > xx#rg.tmp.cram ./test_view -@4 -D xx#rg.tmp.cram > xx#rg.tmp.cram.sam_ ./compare_sam.pl -nomd xx#rg.sam xx#rg.tmp.cram.sam_ ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#rg.tmp.bam > xx#rg.tmp.bam.cram ./test_view -@4 xx#rg.tmp.bam.cram > xx#rg.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#rg.sam xx#rg.tmp.bam.cram.bam.sam_ .. ok test_view testing xx#tlen.sam, ref xx.fa: ./test_view -@4 -S -l0 -b xx#tlen.sam > xx#tlen.tmp.bam ./test_view -@4 xx#tlen.tmp.bam > xx#tlen.tmp.bam.sam_ ./compare_sam.pl xx#tlen.sam xx#tlen.tmp.bam.sam_ ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#tlen.sam > xx#tlen.tmp.cram ./test_view -@4 -D xx#tlen.tmp.cram > xx#tlen.tmp.cram.sam_ ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.cram.sam_ ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#tlen.tmp.bam > xx#tlen.tmp.bam.cram ./test_view -@4 xx#tlen.tmp.bam.cram > xx#tlen.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.bam.cram.bam.sam_ ./test_view -@4 -t xx.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 xx#tlen.tmp.bam.cram > xx#tlen.tmp.bam.cram.ms ./test_view -@4 xx#tlen.tmp.bam.cram.ms > xx#tlen.tmp.bam.cram.sam_ ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.bam.cram.sam_ ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=3.1 -o archive xx#tlen.sam > xx#tlen.tmp.cram [W::cram_set_voption] CRAM version 3.1 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D xx#tlen.tmp.cram > xx#tlen.tmp.cram.sam_ ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.cram.sam_ ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o archive xx#tlen.sam > xx#tlen.tmp.cram [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. This is a technology demonstration that should not be used for archival data. ./test_view -@4 -D xx#tlen.tmp.cram > xx#tlen.tmp.cram.sam_ ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.cram.sam_ .. ok test_view testing xx#tlen2.sam, ref xx.fa: ./test_view -@4 -S -l0 -b xx#tlen2.sam > xx#tlen2.tmp.bam ./test_view -@4 xx#tlen2.tmp.bam > xx#tlen2.tmp.bam.sam_ ./compare_sam.pl xx#tlen2.sam xx#tlen2.tmp.bam.sam_ ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#tlen2.sam > xx#tlen2.tmp.cram ./test_view -@4 -D xx#tlen2.tmp.cram > xx#tlen2.tmp.cram.sam_ ./compare_sam.pl -nomd xx#tlen2.sam xx#tlen2.tmp.cram.sam_ ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#tlen2.tmp.bam > xx#tlen2.tmp.bam.cram ./test_view -@4 xx#tlen2.tmp.bam.cram > xx#tlen2.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#tlen2.sam xx#tlen2.tmp.bam.cram.bam.sam_ ./test_view -@4 -t xx.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 xx#tlen2.tmp.bam.cram > xx#tlen2.tmp.bam.cram.ms ./test_view -@4 xx#tlen2.tmp.bam.cram.ms > xx#tlen2.tmp.bam.cram.sam_ ./compare_sam.pl -nomd xx#tlen2.sam xx#tlen2.tmp.bam.cram.sam_ .. ok test_view testing xx#triplet.sam, ref xx.fa: ./test_view -@4 -S -l0 -b xx#triplet.sam > xx#triplet.tmp.bam ./test_view -@4 xx#triplet.tmp.bam > xx#triplet.tmp.bam.sam_ ./compare_sam.pl xx#triplet.sam xx#triplet.tmp.bam.sam_ ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#triplet.sam > xx#triplet.tmp.cram ./test_view -@4 -D xx#triplet.tmp.cram > xx#triplet.tmp.cram.sam_ ./compare_sam.pl -nomd xx#triplet.sam xx#triplet.tmp.cram.sam_ ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#triplet.tmp.bam > xx#triplet.tmp.bam.cram ./test_view -@4 xx#triplet.tmp.bam.cram > xx#triplet.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#triplet.sam xx#triplet.tmp.bam.cram.bam.sam_ ./test_view -@4 -t xx.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 xx#triplet.tmp.bam.cram > xx#triplet.tmp.bam.cram.ms ./test_view -@4 xx#triplet.tmp.bam.cram.ms > xx#triplet.tmp.bam.cram.sam_ ./compare_sam.pl -nomd xx#triplet.sam xx#triplet.tmp.bam.cram.sam_ .. ok test_view testing xx#unsorted.sam, ref xx.fa: ./test_view -@4 -S -l0 -b xx#unsorted.sam > xx#unsorted.tmp.bam ./test_view -@4 xx#unsorted.tmp.bam > xx#unsorted.tmp.bam.sam_ ./compare_sam.pl xx#unsorted.sam xx#unsorted.tmp.bam.sam_ ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#unsorted.sam > xx#unsorted.tmp.cram ./test_view -@4 -D xx#unsorted.tmp.cram > xx#unsorted.tmp.cram.sam_ ./compare_sam.pl -nomd xx#unsorted.sam xx#unsorted.tmp.cram.sam_ ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#unsorted.tmp.bam > xx#unsorted.tmp.bam.cram ./test_view -@4 xx#unsorted.tmp.bam.cram > xx#unsorted.tmp.bam.cram.bam.sam_ ./compare_sam.pl -nomd xx#unsorted.sam xx#unsorted.tmp.bam.cram.bam.sam_ .. ok test_view testing region queries: ./test_view -@4 -i reference=ce.fa range.cram CHROMOSOME_II:2980-2980 CHROMOSOME_IV:1500-1500 CHROMOSOME_II:2980-2980 CHROMOSOME_I:1000-1100 > range.tmp ./compare_sam.pl range.tmp range.out ./test_view -@4 range.bam CHROMOSOME_II:2980-2980 CHROMOSOME_IV:1500-1500 CHROMOSOME_II:2980-2980 CHROMOSOME_I:1000-1100 > range.tmp ./compare_sam.pl range.tmp range.out .. ok test_view testing BAM files with absent @SQ lines: ./test_view -@4 -p no_hdr_sq_1.tmp.sam no_hdr_sq_1.bam ./compare_sam.pl no_hdr_sq_1.tmp.sam no_hdr_sq_1.expected.sam ./test_view -@4 -p no_hdr_sq_1.chr1.tmp.sam no_hdr_sq_1.bam CHROMOSOME_I ./compare_sam.pl no_hdr_sq_1.chr1.tmp.sam no_hdr_sq_1.expected.sam .. ok test_view testing large (> 2Gbases) positions: ./test_view -@4 -z -p longrefs/longref.tmp.sam.gz -x longrefs/longref.tmp.sam.gz.csi.otf -m 14 longrefs/longref.sam ./test_view -@4 -p longrefs/longref.tmp.sam_ longrefs/longref.tmp.sam.gz ./compare_sam.pl longrefs/longref.sam longrefs/longref.tmp.sam_ test_view: /builddir/build/BUILD/htslib-1.15.1/test/test_index -c longrefs/longref.tmp.sam.gz .. ok ./test_view -@4 -p longrefs/longref_itr.tmp.sam longrefs/longref.tmp.sam.gz CHROMOSOME_I:10000000000-10000000003 ./compare_sam.pl longrefs/longref_itr.expected.sam longrefs/longref_itr.tmp.sam ./test_view -@4 -M -p longrefs/longref_multi.tmp.sam longrefs/longref.tmp.sam.gz CHROMOSOME_I:10000000000-10000000003 CHROMOSOME_I:10000000100-10000000110 ./compare_sam.pl longrefs/longref_multi.expected.sam longrefs/longref_multi.tmp.sam .. ok test_MD testing xx#MD.sam, ref xx.fa: ./test_view -o store_nm=1 -o store_md=1 -t xx.fa -C xx#MD.sam > xx#MD.tmp.cram ./test_view -i decode_md=0 -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_ ./compare_sam.pl xx#MD.sam xx#MD.tmp.cram.sam_ ./test_view -t xx.fa -C xx#MD.sam > xx#MD.tmp.cram ./test_view -i decode_md=0 -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_ ./compare_sam.pl -partialmd=2 xx#MD.sam xx#MD.tmp.cram.sam_ Checking for MD/NM in xx#MD.sam ./test_view -t xx.fa -C xx#MD.sam > xx#MD.tmp.cram ./test_view -i decode_md=1 -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_ ./compare_sam.pl -partialmd=1 xx#MD.sam xx#MD.tmp.cram.sam_ .. ok test_MD testing xx#MD2.sam, ref xx.fa: ./test_view -o store_nm=1 -o store_md=1 -t xx.fa -C xx#MD2.sam > xx#MD2.tmp.cram ./test_view -i decode_md=0 -D xx#MD2.tmp.cram > xx#MD2.tmp.cram.sam_ ./compare_sam.pl xx#MD2.sam xx#MD2.tmp.cram.sam_ ./test_view -t xx.fa -C xx#MD2.sam > xx#MD2.tmp.cram ./test_view -i decode_md=0 -D xx#MD2.tmp.cram > xx#MD2.tmp.cram.sam_ ./compare_sam.pl -partialmd=2 xx#MD2.sam xx#MD2.tmp.cram.sam_ ./test_view -t xx.fa -C xx#MD2.sam > xx#MD2.tmp.cram ./test_view -i decode_md=1 -D xx#MD2.tmp.cram > xx#MD2.tmp.cram.sam_ ./compare_sam.pl -partialmd=1 xx#MD2.sam xx#MD2.tmp.cram.sam_ .. ok test_vcf_api: /builddir/build/BUILD/htslib-1.15.1/test/test-vcf-api /tmp/pupv9IC0gr/test-vcf-api.bcf [W::bcf_record_check] Bad BCF record at 1:1: No REF allele [E::bcf_index_build3] TBI indices for BCF files are not supported [E::idx_find_and_load] Could not retrieve index file for '/tmp/pupv9IC0gr/test-vcf-api.bcf' .. ok test_bcf2vcf: /builddir/build/BUILD/htslib-1.15.1/test/test_view /builddir/build/BUILD/htslib-1.15.1/test/tabix/vcf_file.bcf .. ok test_vcf_sweep: /builddir/build/BUILD/htslib-1.15.1/test/test-vcf-sweep /tmp/pupv9IC0gr/test-vcf-api.bcf .. ok test_vcf_various: /builddir/build/BUILD/htslib-1.15.1/htsfile -ch /builddir/build/BUILD/htslib-1.15.1/test/test-vcf-hdr-in.vcf .. ok test_vcf_various: /builddir/build/BUILD/htslib-1.15.1/htsfile -c /builddir/build/BUILD/htslib-1.15.1/test/formatcols.vcf .. ok test_vcf_various: /builddir/build/BUILD/htslib-1.15.1/htsfile -c /builddir/build/BUILD/htslib-1.15.1/test/noroundtrip.vcf .. ok test_vcf_various: /builddir/build/BUILD/htslib-1.15.1/htsfile -c /builddir/build/BUILD/htslib-1.15.1/test/formatmissing.vcf .. ok test_vcf_various: /builddir/build/BUILD/htslib-1.15.1/htsfile -c /builddir/build/BUILD/htslib-1.15.1/test/vcf_meta_meta.vcf .. ok test-bcf-sr: /builddir/build/BUILD/htslib-1.15.1/test/test-bcf-sr.pl -t /tmp/pupv9IC0gr -s 60320536 .. ok test-bcf-sr: /builddir/build/BUILD/htslib-1.15.1/test/test-bcf-sr.pl -t /tmp/pupv9IC0gr -s 339557549 .. ok test-bcf-sr: /builddir/build/BUILD/htslib-1.15.1/test/test-bcf-sr.pl -t /tmp/pupv9IC0gr -s 605750534 .. ok test-bcf-sr: /builddir/build/BUILD/htslib-1.15.1/test/test-bcf-sr.pl -t /tmp/pupv9IC0gr -s 159095519 .. ok test-bcf-sr: /builddir/build/BUILD/htslib-1.15.1/test/test-bcf-sr.pl -t /tmp/pupv9IC0gr -s 438468684 .. ok test-bcf-sr: /builddir/build/BUILD/htslib-1.15.1/test/test-bcf-sr.pl -t /tmp/pupv9IC0gr -s 374698718 .. ok test-bcf-sr: /builddir/build/BUILD/htslib-1.15.1/test/test-bcf-sr.pl -t /tmp/pupv9IC0gr -s 437317118 .. ok test-bcf-sr: /builddir/build/BUILD/htslib-1.15.1/test/test-bcf-sr.pl -t /tmp/pupv9IC0gr -s 984425858 .. ok test-bcf-sr: /builddir/build/BUILD/htslib-1.15.1/test/test-bcf-sr.pl -t /tmp/pupv9IC0gr -s 640886785 .. ok test-bcf-sr: /builddir/build/BUILD/htslib-1.15.1/test/test-bcf-sr.pl -t /tmp/pupv9IC0gr -s 1156268200 .. ok test_command: /builddir/build/BUILD/htslib-1.15.1/test/test-bcf-translate - .. ok test_convert_padded_header: /builddir/build/BUILD/htslib-1.15.1/test/test_view -t ce.fa -C /tmp/pupv9IC0gr/headernul0.bam .. ok test_convert_padded_header: /builddir/build/BUILD/htslib-1.15.1/test/test_view -t ce.fa -C /tmp/pupv9IC0gr/headernul1.bam .. ok test_convert_padded_header: /builddir/build/BUILD/htslib-1.15.1/test/test_view -t ce.fa -C /tmp/pupv9IC0gr/headernul678.bam .. ok test_rebgzip: /builddir/build/BUILD/htslib-1.15.1/bgzip -I /builddir/build/BUILD/htslib-1.15.1/test/bgziptest.txt.gz.gzi -c -g /builddir/build/BUILD/htslib-1.15.1/test/bgziptest.txt .. ok test-logging: /builddir/build/BUILD/htslib-1.15.1/test/test-logging.pl .. ok test_plugin_loading: HTS_PATH=/builddir/build/BUILD/htslib-1.15.1 /builddir/build/BUILD/htslib-1.15.1/test/with-shlib.sh /builddir/build/BUILD/htslib-1.15.1/htsfile https://localhost:99999/invalid_port .. ok test_realn: /builddir/build/BUILD/htslib-1.15.1/test/test_realn -f /builddir/build/BUILD/htslib-1.15.1/test/realn01.fa -i /builddir/build/BUILD/htslib-1.15.1/test/realn01.sam -o - .. ok test_realn: /builddir/build/BUILD/htslib-1.15.1/test/test_realn -f /builddir/build/BUILD/htslib-1.15.1/test/realn02.fa -i /builddir/build/BUILD/htslib-1.15.1/test/realn02.sam -o - .. ok test_realn: /builddir/build/BUILD/htslib-1.15.1/test/test_realn -a -f /builddir/build/BUILD/htslib-1.15.1/test/realn01.fa -i /builddir/build/BUILD/htslib-1.15.1/test/realn01.sam -o - .. ok test_realn: /builddir/build/BUILD/htslib-1.15.1/test/test_realn -a -f /builddir/build/BUILD/htslib-1.15.1/test/realn02.fa -i /builddir/build/BUILD/htslib-1.15.1/test/realn02.sam -o - .. ok test_realn: /builddir/build/BUILD/htslib-1.15.1/test/test_realn -e -f /builddir/build/BUILD/htslib-1.15.1/test/realn01.fa -i /builddir/build/BUILD/htslib-1.15.1/test/realn01.sam -o - .. ok test_realn: /builddir/build/BUILD/htslib-1.15.1/test/test_realn -e -f /builddir/build/BUILD/htslib-1.15.1/test/realn02.fa -i /builddir/build/BUILD/htslib-1.15.1/test/realn02.sam -o - .. ok test_realn: /builddir/build/BUILD/htslib-1.15.1/test/test_realn -r -f /builddir/build/BUILD/htslib-1.15.1/test/realn02.fa -i /builddir/build/BUILD/htslib-1.15.1/test/realn02-r.sam -o - .. ok test_realn: /builddir/build/BUILD/htslib-1.15.1/test/test_realn -a -f /builddir/build/BUILD/htslib-1.15.1/test/realn02.fa -i /builddir/build/BUILD/htslib-1.15.1/test/realn02_exp.sam -o - .. ok test_realn: /builddir/build/BUILD/htslib-1.15.1/test/test_realn -f /builddir/build/BUILD/htslib-1.15.1/test/realn02.fa -i /builddir/build/BUILD/htslib-1.15.1/test/realn02_exp-a.sam -o - .. ok Number of tests: total .. 172 passed .. 172 failed .. 0 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: htslib-1.15.1-1.fc38.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.e8mRs9 + umask 022 + cd /builddir/build/BUILD + cd htslib-1.15.1 + DOCDIR=/builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/share/doc/htslib + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/share/doc/htslib + cp -pr NEWS /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/share/doc/htslib + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.8wl2BV + umask 022 + cd /builddir/build/BUILD + cd htslib-1.15.1 + LICENSEDIR=/builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/share/licenses/htslib + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/share/licenses/htslib + cp -pr LICENSE /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386/usr/share/licenses/htslib + RPM_EC=0 ++ jobs -p + exit 0 Provides: htslib = 1.15.1-1.fc38 htslib(x86-32) = 1.15.1-1.fc38 libhts.so.3 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.2) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.33) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libcrypto.so.3 libcrypto.so.3(OPENSSL_3.0.0) libcurl.so.4 libhts.so.3 liblzma.so.5 liblzma.so.5(XZ_5.0) libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.23) libm.so.6(GLIBC_2.29) libz.so.1 rtld(GNU_HASH) Processing files: htslib-devel-1.15.1-1.fc38.i686 Provides: htslib-devel = 1.15.1-1.fc38 htslib-devel(x86-32) = 1.15.1-1.fc38 pkgconfig(htslib) = 1.15.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config libhts.so.3 Processing files: htslib-tools-1.15.1-1.fc38.i686 Provides: htslib-tools = 1.15.1-1.fc38 htslib-tools(x86-32) = 1.15.1-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.2) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.33) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) liblzma.so.5 liblzma.so.5(XZ_5.0) libm.so.6 libm.so.6(GLIBC_2.29) libz.so.1 rtld(GNU_HASH) Processing files: htslib-debugsource-1.15.1-1.fc38.i686 Provides: htslib-debugsource = 1.15.1-1.fc38 htslib-debugsource(x86-32) = 1.15.1-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: htslib-debuginfo-1.15.1-1.fc38.i686 Provides: debuginfo(build-id) = 49e42ff20730c860b96bf54d4429f39b0288fe50 debuginfo(build-id) = 8590274ab97e9b1f140ffaa03c407fc6f7ecc8f0 debuginfo(build-id) = 9a2e660567ae0f2f83436f84a5e5a2e2003e17e5 debuginfo(build-id) = a1639659b467b3e5899d9633d6836342f2d63028 debuginfo(build-id) = a8dbaa11d8543074e3e376465d64f91b0c1d2726 htslib-debuginfo = 1.15.1-1.fc38 htslib-debuginfo(x86-32) = 1.15.1-1.fc38 libhts.so.1.15.1-1.15.1-1.fc38.i386.debug Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: htslib-debugsource(x86-32) = 1.15.1-1.fc38 Processing files: htslib-tools-debuginfo-1.15.1-1.fc38.i686 Provides: debuginfo(build-id) = 1727b6d7cf8af5be64fb46c0103f2dd3066f25c0 debuginfo(build-id) = 8c52d4a27e429d7aec2fa9eced2abe9639e501c5 debuginfo(build-id) = dee2c2cbcda4d63a77b76806ac881177bfd36577 htslib-tools-debuginfo = 1.15.1-1.fc38 htslib-tools-debuginfo(x86-32) = 1.15.1-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: htslib-debugsource(x86-32) = 1.15.1-1.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386 Wrote: /builddir/build/RPMS/htslib-debuginfo-1.15.1-1.fc38.i686.rpm Wrote: /builddir/build/RPMS/htslib-tools-debuginfo-1.15.1-1.fc38.i686.rpm Wrote: /builddir/build/RPMS/htslib-debugsource-1.15.1-1.fc38.i686.rpm Wrote: /builddir/build/RPMS/htslib-1.15.1-1.fc38.i686.rpm Wrote: /builddir/build/RPMS/htslib-devel-1.15.1-1.fc38.i686.rpm Wrote: /builddir/build/RPMS/htslib-tools-1.15.1-1.fc38.i686.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.H4CpMj + umask 022 + cd /builddir/build/BUILD + cd htslib-1.15.1 + /usr/bin/rm -rf /builddir/build/BUILDROOT/htslib-1.15.1-1.fc38.i386 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.qtS9M7 + umask 022 + cd /builddir/build/BUILD + rm -rf htslib-1.15.1 htslib-1.15.1.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild htslib-1.15.1-1.fc38.src.rpm Finish: build phase for htslib-1.15.1-1.fc38.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1671965880.632776/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-i686-1671965880.632776/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-i686-1671965880.632776/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/htslib-1.15.1-1.fc38.src.rpm) Config(child) 5 minutes 47 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool