Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/staden-io_lib.spec'], chrootPath='/var/lib/mock/fedora-rawhide-i686-1672346961.600380/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.fkg84w4k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.fkg84w4k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'de9ca6ca36104ef99a65b8d40ebf9ca0', '-D', '/var/lib/mock/fedora-rawhide-i686-1672346961.600380/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.fkg84w4k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/staden-io_lib.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1658534400 Wrote: /builddir/build/SRPMS/staden-io_lib-1.12.4-24.fc38.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/staden-io_lib.spec'], chrootPath='/var/lib/mock/fedora-rawhide-i686-1672346961.600380/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.fkg84w4k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.fkg84w4k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '40b63685014c42fab49aae03dfaff60b', '-D', '/var/lib/mock/fedora-rawhide-i686-1672346961.600380/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.fkg84w4k:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/staden-io_lib.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1658534400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ZuHigK + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf io_lib-1.12.4 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/io_lib-1.12.4.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd io_lib-1.12.4 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/staden-libs-config.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + mv io_lib-config.in staden-io_lib-config.in + sed -i s/libread/libstaden-read/g io_lib/Makefile.in progs/Makefile.in + sed -i s/lread/lstaden-read/ staden-io_lib-config.in + sed -i s/io_lib-config/staden-io_lib-config/g configure Makefile.in + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.zzpA8x + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd io_lib-1.12.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2022-12-29 20:51:06.255228419 +0000 +++ ./configure 2022-12-29 20:51:06.288227847 +0000 @@ -1943,7 +1943,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2022-12-29 20:51:06.288227847 +0000 +++ ./configure 2022-12-29 20:51:06.314227396 +0000 @@ -6307,7 +6307,7 @@ sympat='\([_A-Za-z][_A-Za-z0-9]*\)' # Transform an extracted symbol line into a proper C declaration -lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^. .* \(.*\)$/extern int \1;/p'" +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" # Transform an extracted symbol line into symbol name and symbol address lt_cv_sys_global_symbol_to_c_name_address="sed -n -e 's/^: \([^ ]*\) $/ {\\\"\1\\\", (lt_ptr) 0},/p' -e 's/^$symcode \([^ ]*\) \([^ ]*\)$/ {\"\2\", (lt_ptr) \&\2},/p'" + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config.sub ++ basename ./config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub '/usr/lib/rpm/redhat/config.sub' -> './config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config.guess ++ basename ./config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess '/usr/lib/rpm/redhat/config.guess' -> './config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh ++ grep -q runstatedir=DIR ./configure + ./configure --build=i686-redhat-linux-gnu --host=i686-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-static checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for i686-redhat-linux-gnu-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking build system type... i686-redhat-linux-gnu checking host system type... i686-redhat-linux-gnu checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... no checking whether g++ accepts -g... no checking dependency style of g++... none checking for i686-redhat-linux-gnu-g77... no checking for i686-redhat-linux-gnu-xlf... no checking for i686-redhat-linux-gnu-f77... no checking for i686-redhat-linux-gnu-frt... no checking for i686-redhat-linux-gnu-pgf77... no checking for i686-redhat-linux-gnu-cf77... no checking for i686-redhat-linux-gnu-fort77... no checking for i686-redhat-linux-gnu-fl32... no checking for i686-redhat-linux-gnu-af77... no checking for i686-redhat-linux-gnu-xlf90... no checking for i686-redhat-linux-gnu-f90... no checking for i686-redhat-linux-gnu-pgf90... no checking for i686-redhat-linux-gnu-pghpf... no checking for i686-redhat-linux-gnu-epcf90... no checking for i686-redhat-linux-gnu-gfortran... no checking for i686-redhat-linux-gnu-g95... no checking for i686-redhat-linux-gnu-xlf95... no checking for i686-redhat-linux-gnu-f95... no checking for i686-redhat-linux-gnu-fort... no checking for i686-redhat-linux-gnu-ifort... no checking for i686-redhat-linux-gnu-ifc... no checking for i686-redhat-linux-gnu-efc... no checking for i686-redhat-linux-gnu-pgf95... no checking for i686-redhat-linux-gnu-lf95... no checking for i686-redhat-linux-gnu-ftn... no checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgf95... no checking for lf95... no checking for ftn... no checking whether we are using the GNU Fortran 77 compiler... no checking whether accepts -g... no checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for i686-redhat-linux-gnu-ar... no checking for ar... ar checking for i686-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking for i686-redhat-linux-gnu-strip... no checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... cat: 'ld.so.conf.d/*.conf': No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool appending configuration tag "F77" to libtool host=i686-redhat-linux-gnu Fixing libtool for -rpath problems. checking for gawk... (cached) gawk checking for curl-config... /usr/bin/curl-config checking for the version of libcurl... 7.87.0 checking whether libcurl just needs -lcurl... yes checking whether libcurl is usable... yes checking for curl_free... yes checking for inflateEnd in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for library containing gethostbyname... none required checking for library containing socket... none required checking whether byte ordering is bigendian... no checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking for zlib.h... (cached) yes checking whether byte ordering is bigendian... (cached) no checking size of short... 2 checking size of int... 4 checking size of long... 4 checking for inline... inline checking for mode_t... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for _LARGEFILE_SOURCE value needed for large files... no checking for library containing cos... -lm checking for strdup... yes configure: creating ./config.status config.status: creating Makefile config.status: creating io_lib/Makefile config.status: creating progs/Makefile config.status: creating tests/Makefile config.status: creating staden-io_lib-config config.status: creating io_lib/os.h config.status: creating io_lib_config.h config.status: executing depfiles commands + sed -i 's+\(search_path_spec=\"\)+\1/lib64 /usr/lib64 +' libtool + /usr/bin/make -O -j2 V=1 VERBOSE=1 /usr/bin/make all-recursive Making all in io_lib make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-scf_extras.lo `test -f 'scf_extras.c' || echo './'`scf_extras.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c scf_extras.c -fPIC -DPIC -o .libs/libstaden_read_la-scf_extras.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-Read.lo `test -f 'Read.c' || echo './'`Read.c mkdir .libs gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c Read.c -fPIC -DPIC -o .libs/libstaden_read_la-Read.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-translate.lo `test -f 'translate.c' || echo './'`translate.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c translate.c -fPIC -DPIC -o .libs/libstaden_read_la-translate.o translate.c: In function 'read2exp': translate.c:292:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 292 | if (p = strrchr(EN, '/')) | ^ translate.c:302:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 302 | if (cp = strrchr(read->trace_name, '/')) | ^~ translate.c: In function 'exp2read': translate.c:650:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 650 | if (fp = open_trace_file(exp_get_entry(e, EFLT_LN), fn)) { | ^~ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-ztr.lo `test -f 'ztr.c' || echo './'`ztr.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ztr.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr.o ztr.c: In function 'mfread_ztr': ztr.c:335:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 335 | while (chunk = ztr_read_chunk_hdr(fp)) { | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-compression.lo `test -f 'compression.c' || echo './'`compression.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c compression.c -fPIC -DPIC -o .libs/libstaden_read_la-compression.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-ztr_translate.lo `test -f 'ztr_translate.c' || echo './'`ztr_translate.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ztr_translate.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr_translate.o ztr_translate.c:335:14: warning: 'ztr_encode_confidence_1' defined but not used [-Wunused-function] 335 | static char *ztr_encode_confidence_1(ztr_t *z, | ^~~~~~~~~~~~~~~~~~~~~~~ ztr_translate.c:182:14: warning: 'ztr_encode_samples_T' defined but not used [-Wunused-function] 182 | static char *ztr_encode_samples_T(ztr_t *z, | ^~~~~~~~~~~~~~~~~~~~ ztr_translate.c:175:14: warning: 'ztr_encode_samples_G' defined but not used [-Wunused-function] 175 | static char *ztr_encode_samples_G(ztr_t *z, | ^~~~~~~~~~~~~~~~~~~~ ztr_translate.c:168:14: warning: 'ztr_encode_samples_C' defined but not used [-Wunused-function] 168 | static char *ztr_encode_samples_C(ztr_t *z, | ^~~~~~~~~~~~~~~~~~~~ ztr_translate.c:161:14: warning: 'ztr_encode_samples_A' defined but not used [-Wunused-function] 161 | static char *ztr_encode_samples_A(ztr_t *z, | ^~~~~~~~~~~~~~~~~~~~ ztr_translate.c: In function 'ztr_encode_samples_4': ztr_translate.c:29:20: warning: '%s' directive writing up to 255 bytes into a region of size 12 [-Wformat-overflow=] 29 | *mdbytes = sprintf(*mdata, "OFFS%c%s", 0, buf) + 1; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:906, from ztr_translate.c:5: In function 'sprintf', inlined from 'ztr_encode_samples_4' at ztr_translate.c:29:13: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 6 and 261 bytes into a destination of size 17 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-fpoint.lo `test -f 'fpoint.c' || echo './'`fpoint.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fpoint.c -fPIC -DPIC -o .libs/libstaden_read_la-fpoint.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-deflate_interlaced.lo `test -f 'deflate_interlaced.c' || echo './'`deflate_interlaced.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c deflate_interlaced.c -fPIC -DPIC -o .libs/libstaden_read_la-deflate_interlaced.o deflate_interlaced.c: In function 'calc_bit_lengths': deflate_interlaced.c:516:9: warning: variable 'map' set but not used [-Wunused-but-set-variable] 516 | int map[258]; | ^~~ deflate_interlaced.c: In function 'huffman_multi_decode': deflate_interlaced.c:1760:9: warning: variable 'nc' set but not used [-Wunused-but-set-variable] 1760 | int nc; | ^~ deflate_interlaced.c:1759:23: warning: variable 'c' set but not used [-Wunused-but-set-variable] 1759 | huffman_codes_t **c; | ^ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-seqIOALF.lo `test -f 'seqIOALF.c' || echo './'`seqIOALF.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c seqIOALF.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOALF.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-seqIOABI.lo `test -f 'seqIOABI.c' || echo './'`seqIOABI.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c seqIOABI.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOABI.o seqIOABI.c: In function 'getABIString': seqIOABI.c:259:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 259 | if (off = getABIIndexEntryLW(fp, indexO, label, count, 4, &len)) { | ^~~ seqIOABI.c: In function 'mfread_abi': seqIOABI.c:657:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 657 | if (p = strchr(commstrp, '\n')) | ^ seqIOABI.c:662:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 662 | } while(commstrp = p); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-seqIOCTF.lo `test -f 'seqIOCTF.c' || echo './'`seqIOCTF.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c seqIOCTF.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOCTF.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-expFileIO.lo `test -f 'expFileIO.c' || echo './'`expFileIO.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c expFileIO.c -fPIC -DPIC -o .libs/libstaden_read_la-expFileIO.o expFileIO.c: In function 'exp_print_mline': expFileIO.c:198:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 198 | if (c = strchr(p, '\n')) | ^ expFileIO.c:207:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 207 | if (c = strchr(p, '\n')) { | ^ expFileIO.c: In function 'opos2str': expFileIO.c:393:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] 393 | if (dir == 0) | ^ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-seqIOPlain.lo `test -f 'seqIOPlain.c' || echo './'`seqIOPlain.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c seqIOPlain.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOPlain.o seqIOPlain.c: In function 'mfread_pln': seqIOPlain.c:150:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 150 | if (p = strchr(type, ' ')) | ^ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-ctfCompress.lo `test -f 'ctfCompress.c' || echo './'`ctfCompress.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ctfCompress.c -fPIC -DPIC -o .libs/libstaden_read_la-ctfCompress.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-misc_scf.lo `test -f 'misc_scf.c' || echo './'`misc_scf.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c misc_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-misc_scf.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' In file included from misc_scf.c:33: misc_scf.c: In function 'is_scf': ../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] 45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') | ^~ misc_scf.c:151:26: note: in expansion of macro 'SCF_MAGIC' 151 | ok = (magic==SCF_MAGIC); | ^~~~~~~~~ ../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] 45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') | ^~ misc_scf.c:151:26: note: in expansion of macro 'SCF_MAGIC' 151 | ok = (magic==SCF_MAGIC); | ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-read_scf.lo `test -f 'read_scf.c' || echo './'`read_scf.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c read_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-read_scf.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' In file included from ../io_lib/Read.h:44, from read_scf.c:46: read_scf.c: In function 'read_scf_header': ../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] 45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') | ^~ read_scf.c:67:28: note: in expansion of macro 'SCF_MAGIC' 67 | if (h->magic_number != SCF_MAGIC) return -1; | ^~~~~~~~~ ../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] 45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') | ^~ read_scf.c:67:28: note: in expansion of macro 'SCF_MAGIC' 67 | if (h->magic_number != SCF_MAGIC) return -1; | ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-write_scf.lo `test -f 'write_scf.c' || echo './'`write_scf.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c write_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-write_scf.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' In file included from write_scf.c:60: write_scf.c: In function 'mfwrite_scf': ../io_lib/scf.h:45:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] 45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') | ^~ write_scf.c:389:32: note: in expansion of macro 'SCF_MAGIC' 389 | scf->header.magic_number = SCF_MAGIC; | ^~~~~~~~~ ../io_lib/scf.h:45:66: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] 45 | #define SCF_MAGIC (((((uint_4)'.'<<8)+(uint_4)'s'<<8)+(uint_4)'c'<<8)+(uint_4)'f') | ^~ write_scf.c:389:32: note: in expansion of macro 'SCF_MAGIC' 389 | scf->header.magic_number = SCF_MAGIC; | ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-sff.lo `test -f 'sff.c' || echo './'`sff.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sff.c -fPIC -DPIC -o .libs/libstaden_read_la-sff.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-array.lo `test -f 'array.c' || echo './'`array.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c array.c -fPIC -DPIC -o .libs/libstaden_read_la-array.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-compress.lo `test -f 'compress.c' || echo './'`compress.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c compress.c -fPIC -DPIC -o .libs/libstaden_read_la-compress.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-srf.lo `test -f 'srf.c' || echo './'`srf.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf.c -fPIC -DPIC -o .libs/libstaden_read_la-srf.o srf.c: In function 'srf_write_cont_hdr': srf.c:300:24: warning: the comparison will always evaluate as 'true' for the address of 'version' will never be NULL [-Waddress] 300 | + (ch->version ? strlen(ch->version) : 0) + 1 | ^ In file included from srf.c:13: ../io_lib/srf.h:25:10: note: 'version' declared here 25 | char version[256]; | ^~~~~~~ srf.c:301:28: warning: the comparison will always evaluate as 'true' for the address of 'base_caller' will never be NULL [-Waddress] 301 | + (ch->base_caller ? strlen(ch->base_caller) : 0) + 1 | ^ ../io_lib/srf.h:27:10: note: 'base_caller' declared here 27 | char base_caller[256]; | ^~~~~~~~~~~ srf.c:302:36: warning: the comparison will always evaluate as 'true' for the address of 'base_caller_version' will never be NULL [-Waddress] 302 | + (ch->base_caller_version ? strlen(ch->base_caller_version) : 0) + 1; | ^ ../io_lib/srf.h:28:10: note: 'base_caller_version' declared here 28 | char base_caller_version[256]; | ^~~~~~~~~~~~~~~~~~~ srf.c: In function 'srf_write_trace_hdr': srf.c:466:26: warning: the comparison will always evaluate as 'true' for the address of 'id_prefix' will never be NULL [-Waddress] 466 | + (th->id_prefix ? strlen(th->id_prefix) : 0) + 1 | ^ ../io_lib/srf.h:35:10: note: 'id_prefix' declared here 35 | char id_prefix[256]; | ^~~~~~~~~ srf.c: In function 'srf_index_write': srf.c:976:27: warning: the comparison will always evaluate as 'true' for the address of 'ch_file' will never be NULL [-Waddress] 976 | 1 + (idx->ch_file ? strlen(idx->ch_file) : 0) + | ^ ../io_lib/srf.h:85:10: note: 'ch_file' declared here 85 | char ch_file[PATH_MAX+1]; | ^~~~~~~ srf.c:977:27: warning: the comparison will always evaluate as 'true' for the address of 'th_file' will never be NULL [-Waddress] 977 | 1 + (idx->th_file ? strlen(idx->th_file) : 0); | ^ ../io_lib/srf.h:86:10: note: 'th_file' declared here 86 | char th_file[PATH_MAX+1]; | ^~~~~~~ srf.c:1002:9: warning: the comparison will always evaluate as 'true' for the address of 'th_file' will never be NULL [-Waddress] 1002 | if (idx->th_file) | ^~~ ../io_lib/srf.h:86:10: note: 'th_file' declared here 86 | char th_file[PATH_MAX+1]; | ^~~~~~~ srf.c:1006:9: warning: the comparison will always evaluate as 'true' for the address of 'ch_file' will never be NULL [-Waddress] 1006 | if (idx->ch_file) | ^~~ ../io_lib/srf.h:85:10: note: 'ch_file' declared here 85 | char ch_file[PATH_MAX+1]; | ^~~~~~~ srf.c: In function 'get_hi_bits': srf.c:1106:59: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses] 1106 | val = (block->data[block->byte]) & (1<<(8-block->bit))-1; | ~~~~~~~~~~~~~~~~~~~^~ srf.c:1126:28: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses] 1126 | & (1<<(nbits-bnum))-1; | ~~~~~~~~~~~~~~~~~^~ srf.c: In function 'pack_trace_suffix': srf.c:1383:17: warning: variable 'width' set but not used [-Wunused-but-set-variable] 1383 | int width = 0; | ^~~~~ srf.c: In function 'partial_decode_ztr': srf.c:1604:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1604 | while (chunk = ztr_read_chunk_hdr(mf)) { | ^~~~~ srf.c: In function 'srf_find_trace': srf.c:2025:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 2025 | fread(dpos, 1, item_sz, srf->fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-error.lo `test -f 'error.c' || echo './'`error.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c error.c -fPIC -DPIC -o .libs/libstaden_read_la-error.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-files.lo `test -f 'files.c' || echo './'`files.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c files.c -fPIC -DPIC -o .libs/libstaden_read_la-files.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-find.lo `test -f 'find.c' || echo './'`find.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c find.c -fPIC -DPIC -o .libs/libstaden_read_la-find.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-mach-io.lo `test -f 'mach-io.c' || echo './'`mach-io.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mach-io.c -fPIC -DPIC -o .libs/libstaden_read_la-mach-io.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-read_alloc.lo `test -f 'read_alloc.c' || echo './'`read_alloc.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c read_alloc.c -fPIC -DPIC -o .libs/libstaden_read_la-read_alloc.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-strings.lo `test -f 'strings.c' || echo './'`strings.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c strings.c -fPIC -DPIC -o .libs/libstaden_read_la-strings.o strings.c: In function 'c2fstr': strings.c:49:5: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation] 49 | strncpy(f,c,i); | ^ In file included from strings.c:19: strings.c:48:18: note: length computed here 48 | i = min((int)strlen(c),max_f); | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-open_trace_file.lo `test -f 'open_trace_file.c' || echo './'`open_trace_file.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c open_trace_file.c -fPIC -DPIC -o .libs/libstaden_read_la-open_trace_file.o open_trace_file.c: In function 'find_file_tar': open_trace_file.c:143:21: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 143 | if (cp = strchr(path, '\n')) | ^~ open_trace_file.c: In function 'sff_hash_query': open_trace_file.c:537:21: warning: assignment to 'FILE **' from incompatible pointer type 'FILE *' [-Wincompatible-pointer-types] 537 | hf->afp = hf->hfp = NULL; /* will be closed by our parent */ | ^ open_trace_file.c:530:18: warning: variable 'fp_copy' set but not used [-Wunused-but-set-variable] 530 | static FILE *fp_copy = NULL; | ^~~~~~~ open_trace_file.c: In function 'find_file_sff': open_trace_file.c:748:14: warning: variable 'nkey' set but not used [-Wunused-but-set-variable] 748 | uint32_t nkey, nflows, chdrlen, rhdrlen, dlen, magic; | ^~~~ open_trace_file.c: In function 'find_file_dir': open_trace_file.c:914:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 914 | if (cp = strrchr(file, '/')) { | ^~ open_trace_file.c: In function 'open_path_mfile': open_trace_file.c:1087:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1087 | if (cp = strrchr(relative_path, '/')) | ^~ open_trace_file.c:1089:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1089 | if (fp = find_file_dir(file, relative_path)) | ^~ open_trace_file.c: In function 'find_file_sff': open_trace_file.c:798:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 798 | fread(index_format, 1, 8, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ open_trace_file.c: In function 'find_file_dir': open_trace_file.c:929:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 929 | fread(magic, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~ open_trace_file.c:940:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 940 | fread(magic, 1, 8, fp); | ^~~~~~~~~~~~~~~~~~~~~~ open_trace_file.c:950:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 950 | fread(magic, 1, 5, fp); | ^~~~~~~~~~~~~~~~~~~~~~ open_trace_file.c: In function 'sff_sorted_query': open_trace_file.c:704:5: warning: 'offset' may be used uninitialized [-Wmaybe-uninitialized] 704 | fseek(fp, offset, SEEK_SET); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ open_trace_file.c:595:14: note: 'offset' was declared here 595 | uint32_t offset; | ^~~~~~ In file included from open_trace_file.c:33: In function 'find_file_url', inlined from 'open_path_mfile' at open_trace_file.c:1054:22: open_trace_file.c:458:14: warning: call to '_curl_easy_setopt_err_write_callback' declared with attribute warning: curl_easy_setopt expects a curl_write_callback argument for this option [-Wattribute-warning] 458 | if (0 != curl_easy_setopt(handle, CURLOPT_WRITEFUNCTION, mfwrite)) | ^~~~~~~~~~~~~~~~ open_trace_file.c:462:14: warning: call to '_curl_easy_setopt_err_write_callback' declared with attribute warning: curl_easy_setopt expects a curl_write_callback argument for this option [-Wattribute-warning] 462 | if (0 != curl_easy_setopt(handle, CURLOPT_HEADERFUNCTION, mfwrite)) | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-xalloc.lo `test -f 'xalloc.c' || echo './'`xalloc.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c xalloc.c -fPIC -DPIC -o .libs/libstaden_read_la-xalloc.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-traceType.lo `test -f 'traceType.c' || echo './'`traceType.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c traceType.c -fPIC -DPIC -o .libs/libstaden_read_la-traceType.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-vlen.lo `test -f 'vlen.c' || echo './'`vlen.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c vlen.c -fPIC -DPIC -o .libs/libstaden_read_la-vlen.o vlen.c: In function 'vflen': vlen.c:86:19: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 86 | for(; c=*++cp;) { | ^ vlen.c:57:9: warning: variable 'i' set but not used [-Wunused-but-set-variable] 57 | int i; | ^ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-jenkins_lookup3.lo `test -f 'jenkins_lookup3.c' || echo './'`jenkins_lookup3.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c jenkins_lookup3.c -fPIC -DPIC -o .libs/libstaden_read_la-jenkins_lookup3.o jenkins_lookup3.c:654:17: warning: 'hashbig' defined but not used [-Wunused-function] 654 | static uint32_t hashbig( const void *key, size_t length, uint32_t initval) | ^~~~~~~ jenkins_lookup3.c:288:17: warning: 'hashlittle' defined but not used [-Wunused-function] 288 | static uint32_t hashlittle( const void *key, size_t length, uint32_t initval) | ^~~~~~~~~~ jenkins_lookup3.c:223:13: warning: 'hashword2' defined but not used [-Wunused-function] 223 | static void hashword2 ( | ^~~~~~~~~ jenkins_lookup3.c:179:17: warning: 'hashword' defined but not used [-Wunused-function] 179 | static uint32_t hashword( | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-hash_table.lo `test -f 'hash_table.c' || echo './'`hash_table.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c hash_table.c -fPIC -DPIC -o .libs/libstaden_read_la-hash_table.o hash_table.c: In function 'HashFileFopen': hash_table.c:1140:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1140 | fread(hf->archives[i], 1, fnamelen, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c:1156:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1156 | fread(&hf->headers[i].pos, 8, 1, hf->hfp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c:1157:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1157 | fread(&hf->headers[i].size, 4, 1, hf->hfp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c:1169:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1169 | fread(&hf->footers[i].pos, 8, 1, hf->hfp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c:1170:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1170 | fread(&hf->footers[i].size, 4, 1, hf->hfp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c: In function 'HashFileQuery': hash_table.c:1368:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1368 | fread(k, klen, 1, hf->hfp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c:1369:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1369 | fread(&headfoot, 1, 1, hf->hfp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c:1372:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1372 | fread(&pos, 8, 1, hf->hfp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c:1376:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1376 | fread(&size, 4, 1, hf->hfp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c: In function 'HashFileExtract': hash_table.c:1506:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1506 | fread(&data[pos], head->size, 1, hf->afp[head->archive_no]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c:1516:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1516 | fread(&data[pos], hfi.size, 1, hf->afp[hfi.archive]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_table.c:1526:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1526 | fread(&data[pos], foot->size, 1, hf->afp[foot->archive_no]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-mFILE.lo `test -f 'mFILE.c' || echo './'`mFILE.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mFILE.c -fPIC -DPIC -o .libs/libstaden_read_la-mFILE.o mFILE.c: In function 'mfreopen': mFILE.c:194:16: warning: variable 'w' set but not used [-Wunused-but-set-variable] 194 | int r = 0, w = 0, a = 0, b = 0, x = 0, mode = 0; | ^ mFILE.c: In function 'mfflush': mFILE.c:487:17: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses] 487 | if (!mf->mode & MF_MODEX) | ^~~~~~~~~ mFILE.c:493:9: warning: ignoring return value of 'ftruncate' declared with attribute 'warn_unused_result' [-Wunused-result] 493 | ftruncate(fileno(mf->fp), ftell(mf->fp)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o libstaden_read_la-pooled_alloc.lo `test -f 'pooled_alloc.c' || echo './'`pooled_alloc.c gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pooled_alloc.c -fPIC -DPIC -o .libs/libstaden_read_la-pooled_alloc.o make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' pooled_alloc.c: In function 'new_pool': pooled_alloc.c:37:11: warning: unused variable 'cp' [-Wunused-variable] 37 | char *cp; | ^~ pooled_alloc.c:35:12: warning: unused variable 'i' [-Wunused-variable] 35 | size_t i, n = PSIZE / p->dsize; | ^ pooled_alloc.c: In function 'pool_alloc': pooled_alloc.c:65:12: warning: unused variable 'i' [-Wunused-variable] 65 | size_t i; | ^ pooled_alloc.c: In function 'pool_free': pooled_alloc.c:95:19: warning: unused variable 'i' [-Wunused-variable] 95 | size_t psize, i; | ^ pooled_alloc.c:95:12: warning: unused variable 'psize' [-Wunused-variable] 95 | size_t psize, i; | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o libstaden-read.la -rpath /usr/lib -version-info 2:2:1 libstaden_read_la-Read.lo libstaden_read_la-scf_extras.lo libstaden_read_la-translate.lo libstaden_read_la-compression.lo libstaden_read_la-ztr.lo libstaden_read_la-ztr_translate.lo libstaden_read_la-deflate_interlaced.lo libstaden_read_la-fpoint.lo libstaden_read_la-seqIOABI.lo libstaden_read_la-seqIOALF.lo libstaden_read_la-ctfCompress.lo libstaden_read_la-seqIOCTF.lo libstaden_read_la-expFileIO.lo libstaden_read_la-seqIOPlain.lo libstaden_read_la-misc_scf.lo libstaden_read_la-read_scf.lo libstaden_read_la-write_scf.lo libstaden_read_la-sff.lo libstaden_read_la-srf.lo libstaden_read_la-array.lo libstaden_read_la-compress.lo libstaden_read_la-error.lo libstaden_read_la-files.lo libstaden_read_la-find.lo libstaden_read_la-mach-io.lo libstaden_read_la-open_trace_file.lo libstaden_read_la-read_alloc.lo libstaden_read_la-strings.lo libstaden_read_la-traceType.lo libstaden_read_la-xalloc.lo libstaden_read_la-vlen.lo libstaden_read_la-hash_table.lo libstaden_read_la-jenkins_lookup3.lo libstaden_read_la-mFILE.lo libstaden_read_la-pooled_alloc.lo -lz -lcurl -lm gcc -shared .libs/libstaden_read_la-Read.o .libs/libstaden_read_la-scf_extras.o .libs/libstaden_read_la-translate.o .libs/libstaden_read_la-compression.o .libs/libstaden_read_la-ztr.o .libs/libstaden_read_la-ztr_translate.o .libs/libstaden_read_la-deflate_interlaced.o .libs/libstaden_read_la-fpoint.o .libs/libstaden_read_la-seqIOABI.o .libs/libstaden_read_la-seqIOALF.o .libs/libstaden_read_la-ctfCompress.o .libs/libstaden_read_la-seqIOCTF.o .libs/libstaden_read_la-expFileIO.o .libs/libstaden_read_la-seqIOPlain.o .libs/libstaden_read_la-misc_scf.o .libs/libstaden_read_la-read_scf.o .libs/libstaden_read_la-write_scf.o .libs/libstaden_read_la-sff.o .libs/libstaden_read_la-srf.o .libs/libstaden_read_la-array.o .libs/libstaden_read_la-compress.o .libs/libstaden_read_la-error.o .libs/libstaden_read_la-files.o .libs/libstaden_read_la-find.o .libs/libstaden_read_la-mach-io.o .libs/libstaden_read_la-open_trace_file.o .libs/libstaden_read_la-read_alloc.o .libs/libstaden_read_la-strings.o .libs/libstaden_read_la-traceType.o .libs/libstaden_read_la-xalloc.o .libs/libstaden_read_la-vlen.o .libs/libstaden_read_la-hash_table.o .libs/libstaden_read_la-jenkins_lookup3.o .libs/libstaden_read_la-mFILE.o .libs/libstaden_read_la-pooled_alloc.o -lz -lcurl -lm -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -Wl,--build-id=sha1 -Wl,-soname -Wl,libstaden-read.so.1 -o .libs/libstaden-read.so.1.1.2 (cd .libs && rm -f libstaden-read.so.1 && ln -s libstaden-read.so.1.1.2 libstaden-read.so.1) (cd .libs && rm -f libstaden-read.so && ln -s libstaden-read.so.1.1.2 libstaden-read.so) creating libstaden-read.la (cd .libs && rm -f libstaden-read.la && ln -s ../libstaden-read.la libstaden-read.la) make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' In function 'find_file_url', inlined from 'open_path_mfile' at open_trace_file.c:1054:22: open_trace_file.c:458:14: warning: call to '_curl_easy_setopt_err_write_callback' declared with attribute warning: curl_easy_setopt expects a curl_write_callback argument for this option [-Wattribute-warning] 458 | if (0 != curl_easy_setopt(handle, CURLOPT_WRITEFUNCTION, mfwrite)) | ^ open_trace_file.c:462:14: warning: call to '_curl_easy_setopt_err_write_callback' declared with attribute warning: curl_easy_setopt expects a curl_write_callback argument for this option [-Wattribute-warning] 462 | if (0 != curl_easy_setopt(handle, CURLOPT_HEADERFUNCTION, mfwrite)) | ^ Making all in progs make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c makeSCF.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c convert_trace.c convert_trace.c:16:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 16 | static char const rcsid[] = "$Id: convert_trace.c,v 1.12 2008-02-20 16:07:44 jkbonfield Exp $"; | ^~~~~ convert_trace.c: In function 'main': convert_trace.c:743:37: warning: '%s' directive writing up to 8191 bytes into a region of size 2042 [-Wformat-overflow=] 724 | infname = line2; | ~~~~~ ...... 743 | sprintf(buf, "ERROR %s", infname); | ^~ In file included from /usr/include/stdio.h:906, from convert_trace.c:5: In function 'sprintf', inlined from 'main' at convert_trace.c:743:3: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 7 and 8198 bytes into a destination of size 2048 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c extract_seq.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' extract_seq.c: In function 'main': extract_seq.c:199:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 199 | if (cp = strchr(line, '\n')) | ^~ make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c extract_fastq.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' extract_fastq.c: In function 'main': extract_fastq.c:141:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 141 | if (cp = strchr(line, '\n')) | ^~ make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c extract_qual.c extract_qual.c: In function 'main': extract_qual.c:317:25: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 317 | if (cp = strchr(line, '\n')) | ^~ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c index_tar.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' index_tar.c: In function 'main': index_tar.c:72:21: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 72 | fread(member, 1, size > 256 ? 256 : size, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ index_tar.c:82:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 82 | fread(member, 1, size > 256 ? 256 : size, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c scf_info.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c scf_dump.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c scf_update.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c get_comment.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c hash_extract.c hash_extract.c: In function 'extract': hash_extract.c:20:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 20 | if (data = HashFileExtract(hf, file, &len)) { | ^~~~ hash_extract.c: In function 'main': hash_extract.c:74:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 74 | if (c = strchr(file, '\n')) | ^ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c hash_tar.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' hash_tar.c: In function 'load_map': hash_tar.c:78:5: warning: implicit declaration of function 'close'; did you mean 'pclose'? [-Wimplicit-function-declaration] 78 | close(fp); | ^~~~~ | pclose hash_tar.c: In function 'main': hash_tar.c:273:11: warning: unused variable 'fp' [-Wunused-variable] 273 | FILE *fp; | ^~ hash_tar.c: In function 'accumulate': hash_tar.c:136:21: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(member, 1, size > 256 ? 256 : size, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_tar.c:146:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 146 | fread(member, 1, size > 256 ? 256 : size, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hash_tar.c:204:1: warning: control reaches end of non-void function [-Wreturn-type] 204 | } | ^ hash_tar.c: In function 'main': hash_tar.c:327:41: warning: 'hf' may be used uninitialized [-Wmaybe-uninitialized] 327 | realloc(hf->headers, (hf->nheaders+1) * | ~~^~~~~~~~~~ hash_tar.c:274:15: note: 'hf' was declared here 274 | HashFile *hf; | ^~ make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c hash_list.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c trace_dump.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c append_sff.c append_sff.c: In function 'main': append_sff.c:116:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 116 | fread(chdr, 1, 31, fpout); | ^~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c hash_sff.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' hash_sff.c: In function 'main': hash_sff.c:207:20: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 207 | while (len = fread(block, 1, 8192, fp)) { | ^~~ hash_sff.c:230:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 230 | fread(hdr, 1, 31, fp); | ^~~~~~~~~~~~~~~~~~~~~ hash_sff.c:258:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 258 | fread(hdr, 1, 31, fpout); | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ztr_dump.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf_index_hash.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' srf_index_hash.c: In function 'main': srf_index_hash.c:138:5: warning: ignoring return value of 'ftruncate' declared with attribute 'warn_unused_result' [-Wunused-result] 138 | ftruncate(fileno(srf->fp), ftello(srf->fp)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf_extract_linear.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf_extract_hash.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf_dump_all.c srf_dump_all.c: In function 'dump_solexa': srf_dump_all.c:309:57: warning: pointer targets in passing argument 3 of 'dump_conf4_solexa' differ in signedness [-Wpointer-sign] 309 | dump_conf4_solexa(files[1], seq, chunks[0]->data+1, chunks[0]->dlength-1); | ~~~~~~~~~~~~~~~^~ | | | char * srf_dump_all.c:227:58: note: expected 'signed char *' but argument is of type 'char *' 227 | void dump_conf4_solexa(FILE *fp, char *seq, signed char *bytes, int nbytes) { | ~~~~~~~~~~~~~^~~~~ srf_dump_all.c:320:53: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign] 320 | chunks[i]->data+2, chunks[i]->dlength-2); | ~~~~~~~~~~~~~~~^~ | | | char * srf_dump_all.c:195:56: note: expected 'unsigned char *' but argument is of type 'char *' 195 | int baseline, unsigned char *bytes, int nbytes) { | ~~~~~~~~~~~~~~~^~~~~ srf_dump_all.c:333:53: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign] 333 | chunks[i]->data+2, chunks[i]->dlength-2); | ~~~~~~~~~~~~~~~^~ | | | char * srf_dump_all.c:195:56: note: expected 'unsigned char *' but argument is of type 'char *' 195 | int baseline, unsigned char *bytes, int nbytes) { | ~~~~~~~~~~~~~~~^~~~~ srf_dump_all.c:346:53: warning: pointer targets in passing argument 7 of 'dump_samples4_solexa' differ in signedness [-Wpointer-sign] 346 | chunks[i]->data+2, chunks[i]->dlength-2); | ~~~~~~~~~~~~~~~^~ | | | char * srf_dump_all.c:195:56: note: expected 'unsigned char *' but argument is of type 'char *' 195 | int baseline, unsigned char *bytes, int nbytes) { | ~~~~~~~~~~~~~~~^~~~~ srf_dump_all.c: In function 'read_filter_from_file': srf_dump_all.c:484:11: warning: variable 'lStartPos' set but not used [-Wunused-but-set-variable] 484 | long lStartPos; /* Offset of start of current line */ | ^~~~~~~~~ srf_dump_all.c:483:11: warning: variable 'lLineLen' set but not used [-Wunused-but-set-variable] 483 | long lLineLen; /* Current line length */ | ^~~~~~~~ srf_dump_all.c:506:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 506 | fread(cFile, lFileLen, 1, input); /* Read the entire file into cFile */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ srf_dump_all.c:566:49: warning: '%s' directive argument is null [-Wformat-overflow=] 566 | fprintf(stderr, "Bad read \"%s\" in read filter \"%s\".\n", read, cThisLine); | ^~ srf_dump_all.c:555:51: warning: '%s' directive argument is null [-Wformat-overflow=] 555 | fprintf(stderr, "Bad prefix \"%s\" in read filter \"%s\".\n", prefix, cThisLine); | ^~ srf_dump_all.c: In function 'get_read_filter': srf_dump_all.c:651:41: warning: '%s' directive argument is null [-Wformat-overflow=] 651 | fprintf(stderr, "Bad read \"%s\" in read filter \"%s\".\n", read, filter_value); | ^~ srf_dump_all.c:640:43: warning: '%s' directive argument is null [-Wformat-overflow=] 640 | fprintf(stderr, "Bad prefix \"%s\" in read filter \"%s\".\n", prefix, filter_value); | ^~ srf_dump_all.c:622:46: warning: '%s' directive argument is null [-Wformat-overflow=] 622 | fprintf(stderr, "Bad file name \"%s\" in read filter \"%s\".\n", file_name, filter_value); | ^~ srf_dump_all.c: In function 'process_srf_to_text_files': srf_dump_all.c:940:20: warning: '/s_' directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 940 | sprintf(fn, "%s/s_%d_%04d_dump.txt", dir, lane, tile); | ^~~ In file included from /usr/include/stdio.h:906, from srf_dump_all.c:37: In function 'sprintf', inlined from 'fopen_text' at srf_dump_all.c:940:5, inlined from 'process_srf_to_text_files' at srf_dump_all.c:988:14: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 19 and 1059 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf2fasta.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf2fastq.c srf2fastq.c: In function 'ztr2fastq': srf2fastq.c:369:17: warning: variable 'start' set but not used [-Wunused-but-set-variable] 369 | int start, length; | ^~~~~ srf2fastq.c:480:21: warning: variable 'start' set but not used [-Wunused-but-set-variable] 480 | int start, length; | ^~~~~ srf2fastq.c:462:41: warning: 'regn' may be used uninitialized [-Wmaybe-uninitialized] 462 | for (iregion=0; iregionnregions; iregion++) { | ~~~~^~~~~~~~~~ srf2fastq.c:248:13: note: 'regn' was declared here 248 | regn_t *regn; | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf_info.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf_filter.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' srf_info.c: In function 'partial_decode_ztr2': srf_info.c:411:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 411 | while (chunk = ztr_read_chunk_hdr(mf)) { | ^~~~~ srf_filter.c: In function 'read_filter_from_file': srf_filter.c:164:11: warning: variable 'lStartPos' set but not used [-Wunused-but-set-variable] 164 | long lStartPos; /* Offset of start of current line */ | ^~~~~~~~~ srf_filter.c:163:11: warning: variable 'lLineLen' set but not used [-Wunused-but-set-variable] 163 | long lLineLen; /* Current line length */ | ^~~~~~~~ srf_filter.c: In function 'dump_read_filter': srf_filter.c:457:33: warning: format '%d' expects argument of type 'int', but argument 2 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 457 | printf("\tread[%d] = %s\n", hi->data.i, hi->key); | ~^ ~~~~~~~~~~ | | | | int uint64_t {aka long long unsigned int} | %lld srf_filter.c: In function 'add_readpair_region': srf_filter.c:587:16: warning: pointer targets in assignment from 'unsigned char *' to 'char *' differ in signedness [-Wpointer-sign] 587 | c.data = data; | ^ srf_filter.c: In function 'srf_filter': srf_filter.c:699:24: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 699 | while (chunk = ztr_read_chunk_hdr(in_srf->mf)) { | ^~~~~ srf_filter.c:788:23: warning: left-hand operand of comma expression has no effect [-Wunused-value] 788 | stderr, "Error making trace header.\nExiting.\n"; | ^ srf_filter.c:788:23: warning: statement with no effect [-Wunused-value] srf_filter.c:794:73: warning: pointer targets in passing argument 3 of 'srf_construct_trace_hdr' differ in signedness [-Wpointer-sign] 794 | srf_construct_trace_hdr(&out_srf->th, in_srf->th.id_prefix, trace_hdr, trace_hdr_size); | ^~~~~~~~~ | | | char * In file included from srf_filter.c:47: ../io_lib/srf.h:146:57: note: expected 'unsigned char *' but argument is of type 'char *' 146 | unsigned char *header, | ~~~~~~~~~~~~~~~^~~~~~ srf_filter.c:894:24: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 894 | while (chunk = ztr_read_chunk_hdr(in_srf->mf)) { | ^~~~~ srf_filter.c:980:92: warning: pointer targets in passing argument 4 of 'srf_construct_trace_body' differ in signedness [-Wpointer-sign] 980 | srf_construct_trace_body(&new_tb, name+strlen(in_srf->th.id_prefix), -1, mf->data, mf->size, old_tb.flags); | ~~^~~~~~ | | | char * ../io_lib/srf.h:155:59: note: expected 'unsigned char *' but argument is of type 'char *' 155 | unsigned char *body, | ~~~~~~~~~~~~~~~^~~~ srf_filter.c: In function 'read_filter_from_file': srf_filter.c:186:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 186 | fread(cFile, lFileLen, 1, input); /* Read the entire file into cFile */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ srf_filter.c:246:49: warning: '%s' directive argument is null [-Wformat-overflow=] 246 | fprintf(stderr, "Bad read \"%s\" in read filter \"%s\".\n", read, cThisLine); | ^~ srf_filter.c:235:51: warning: '%s' directive argument is null [-Wformat-overflow=] 235 | fprintf(stderr, "Bad prefix \"%s\" in read filter \"%s\".\n", prefix, cThisLine); | ^~ srf_filter.c: In function 'get_read_filter': srf_filter.c:348:41: warning: '%s' directive argument is null [-Wformat-overflow=] 348 | fprintf(stderr, "Bad read \"%s\" in read filter \"%s\".\n", read, filter_value); | ^~ srf_filter.c:337:43: warning: '%s' directive argument is null [-Wformat-overflow=] 337 | fprintf(stderr, "Bad prefix \"%s\" in read filter \"%s\".\n", prefix, filter_value); | ^~ srf_filter.c:319:46: warning: '%s' directive argument is null [-Wformat-overflow=] 319 | fprintf(stderr, "Bad file name \"%s\" in read filter \"%s\".\n", file_name, filter_value); | ^~ srf_filter.c: In function 'srf_filter': srf_filter.c:970:19: warning: 'output_trace_header' may be used uninitialized [-Wmaybe-uninitialized] 970 | if( output_trace_header ) { | ^ srf_filter.c:613:9: note: 'output_trace_header' was declared here 613 | int output_trace_header; | ^~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c srf_list.c make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' srf_list.c: In function 'count_file': srf_list.c:75:19: warning: unused variable 'data' [-Wunused-variable] 75 | unsigned char data[16]; | ^~~~ srf_list.c:74:22: warning: unused variable 'i' [-Wunused-variable] 74 | int item_sz = 9, i; | ^ srf_list.c:73:11: warning: variable 'ipos' set but not used [-Wunused-but-set-variable] 73 | off_t ipos, skip; | ^~~~ srf_list.c:72:13: warning: unused variable 'count' [-Wunused-variable] 72 | int64_t count = 0; | ^~~~~ srf_list.c: In function 'main': srf_list.c:158:26: warning: format '%d' expects argument of type 'int', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=] 158 | printf("%s: %d sequences\n", argv[i], c); | ~^ ~ | | | | int int64_t {aka long long int} | %lld make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o makeSCF makeSCF.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/makeSCF makeSCF.o ../io_lib/.libs/libstaden-read.so -lm creating makeSCF make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o convert_trace convert_trace.o ../io_lib/libstaden-read.la -lm mkdir .libs gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/convert_trace convert_trace.o ../io_lib/.libs/libstaden-read.so -lm creating convert_trace make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o extract_seq extract_seq.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/extract_seq extract_seq.o ../io_lib/.libs/libstaden-read.so -lm creating extract_seq make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o extract_qual extract_qual.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/extract_qual extract_qual.o ../io_lib/.libs/libstaden-read.so -lm creating extract_qual make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o extract_fastq extract_fastq.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/extract_fastq extract_fastq.o ../io_lib/.libs/libstaden-read.so -lm creating extract_fastq make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o index_tar index_tar.o -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o index_tar index_tar.o -lm make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o scf_info scf_info.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/scf_info scf_info.o ../io_lib/.libs/libstaden-read.so -lm creating scf_info make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o scf_dump scf_dump.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/scf_dump scf_dump.o ../io_lib/.libs/libstaden-read.so -lm creating scf_dump make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o scf_update scf_update.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/scf_update scf_update.o ../io_lib/.libs/libstaden-read.so -lm creating scf_update make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o get_comment get_comment.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/get_comment get_comment.o ../io_lib/.libs/libstaden-read.so -lm creating get_comment make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o hash_extract hash_extract.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/hash_extract hash_extract.o ../io_lib/.libs/libstaden-read.so -lm creating hash_extract make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o hash_tar hash_tar.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/hash_tar hash_tar.o ../io_lib/.libs/libstaden-read.so -lm creating hash_tar make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o hash_list hash_list.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/hash_list hash_list.o ../io_lib/.libs/libstaden-read.so -lm creating hash_list make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o trace_dump trace_dump.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/trace_dump trace_dump.o ../io_lib/.libs/libstaden-read.so -lm creating trace_dump make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o hash_sff hash_sff.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/hash_sff hash_sff.o ../io_lib/.libs/libstaden-read.so -lm creating hash_sff make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o append_sff append_sff.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/append_sff append_sff.o ../io_lib/.libs/libstaden-read.so -lm creating append_sff make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o ztr_dump ztr_dump.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/ztr_dump ztr_dump.o ../io_lib/.libs/libstaden-read.so -lm creating ztr_dump make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o srf_index_hash srf_index_hash.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/srf_index_hash srf_index_hash.o ../io_lib/.libs/libstaden-read.so -lm creating srf_index_hash make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o srf_dump_all srf_dump_all.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/srf_dump_all srf_dump_all.o ../io_lib/.libs/libstaden-read.so -lm creating srf_dump_all make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o srf_extract_linear srf_extract_linear.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/srf_extract_linear srf_extract_linear.o ../io_lib/.libs/libstaden-read.so -lm creating srf_extract_linear make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o srf_extract_hash srf_extract_hash.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/srf_extract_hash srf_extract_hash.o ../io_lib/.libs/libstaden-read.so -lm creating srf_extract_hash make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o srf2fasta srf2fasta.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/srf2fasta srf2fasta.o ../io_lib/.libs/libstaden-read.so -lm creating srf2fasta make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o srf2fastq srf2fastq.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/srf2fastq srf2fastq.o ../io_lib/.libs/libstaden-read.so -lm creating srf2fastq make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o srf_filter srf_filter.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/srf_filter srf_filter.o ../io_lib/.libs/libstaden-read.so -lm creating srf_filter make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o srf_info srf_info.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/srf_info srf_info.o ../io_lib/.libs/libstaden-read.so -lm creating srf_info make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o srf_list srf_list.o ../io_lib/libstaden-read.la -lm gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/srf_list srf_list.o ../io_lib/.libs/libstaden-read.so -lm creating srf_list make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' Making all in tests make[2]: Nothing to be done for 'all'. + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.a3Brnb + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386 ++ dirname /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd io_lib-1.12.4 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386 'INSTALL=/usr/bin/install -p' Making install in io_lib make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' test -z "/usr/lib" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/lib" /bin/sh ../libtool --mode=install /usr/bin/install -p 'libstaden-read.la' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/lib/libstaden-read.la' /usr/bin/install -p .libs/libstaden-read.so.1.1.2 /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/lib/libstaden-read.so.1.1.2 (cd /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/lib && { ln -s -f libstaden-read.so.1.1.2 libstaden-read.so.1 || { rm -f libstaden-read.so.1 && ln -s libstaden-read.so.1.1.2 libstaden-read.so.1; }; }) (cd /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/lib && { ln -s -f libstaden-read.so.1.1.2 libstaden-read.so || { rm -f libstaden-read.so && ln -s libstaden-read.so.1.1.2 libstaden-read.so; }; }) /usr/bin/install -p .libs/libstaden-read.lai /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/lib/libstaden-read.la libtool: install: warning: remember to run `libtool --finish /usr/lib' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/io_lib' Making install in progs make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/progs' test -z "/usr/bin" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin" /bin/sh ../libtool --mode=install /usr/bin/install -p 'convert_trace' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/convert_trace' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/convert_trace /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/convert_trace /bin/sh ../libtool --mode=install /usr/bin/install -p 'makeSCF' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/makeSCF' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/makeSCF /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/makeSCF /bin/sh ../libtool --mode=install /usr/bin/install -p 'extract_seq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/extract_seq' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/extract_seq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/extract_seq /bin/sh ../libtool --mode=install /usr/bin/install -p 'extract_qual' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/extract_qual' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/extract_qual /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/extract_qual /bin/sh ../libtool --mode=install /usr/bin/install -p 'extract_fastq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/extract_fastq' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/extract_fastq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/extract_fastq /bin/sh ../libtool --mode=install /usr/bin/install -p 'index_tar' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/index_tar' /usr/bin/install -p index_tar /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/index_tar /bin/sh ../libtool --mode=install /usr/bin/install -p 'scf_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/scf_dump' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/scf_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/scf_dump /bin/sh ../libtool --mode=install /usr/bin/install -p 'scf_info' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/scf_info' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/scf_info /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/scf_info /bin/sh ../libtool --mode=install /usr/bin/install -p 'scf_update' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/scf_update' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/scf_update /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/scf_update /bin/sh ../libtool --mode=install /usr/bin/install -p 'get_comment' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/get_comment' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/get_comment /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/get_comment /bin/sh ../libtool --mode=install /usr/bin/install -p 'hash_tar' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/hash_tar' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/hash_tar /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/hash_tar /bin/sh ../libtool --mode=install /usr/bin/install -p 'hash_extract' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/hash_extract' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/hash_extract /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/hash_extract /bin/sh ../libtool --mode=install /usr/bin/install -p 'hash_list' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/hash_list' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/hash_list /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/hash_list /bin/sh ../libtool --mode=install /usr/bin/install -p 'trace_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/trace_dump' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/trace_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/trace_dump /bin/sh ../libtool --mode=install /usr/bin/install -p 'hash_sff' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/hash_sff' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/hash_sff /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/hash_sff /bin/sh ../libtool --mode=install /usr/bin/install -p 'append_sff' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/append_sff' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/append_sff /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/append_sff /bin/sh ../libtool --mode=install /usr/bin/install -p 'ztr_dump' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/ztr_dump' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/ztr_dump /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/ztr_dump /bin/sh ../libtool --mode=install /usr/bin/install -p 'srf_dump_all' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_dump_all' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/srf_dump_all /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_dump_all /bin/sh ../libtool --mode=install /usr/bin/install -p 'srf_index_hash' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_index_hash' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/srf_index_hash /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_index_hash /bin/sh ../libtool --mode=install /usr/bin/install -p 'srf_extract_linear' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_extract_linear' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/srf_extract_linear /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_extract_linear /bin/sh ../libtool --mode=install /usr/bin/install -p 'srf_extract_hash' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_extract_hash' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/srf_extract_hash /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_extract_hash /bin/sh ../libtool --mode=install /usr/bin/install -p 'srf2fastq' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf2fastq' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/srf2fastq /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf2fastq /bin/sh ../libtool --mode=install /usr/bin/install -p 'srf2fasta' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf2fasta' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/srf2fasta /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf2fasta /bin/sh ../libtool --mode=install /usr/bin/install -p 'srf_filter' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_filter' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/srf_filter /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_filter /bin/sh ../libtool --mode=install /usr/bin/install -p 'srf_info' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_info' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/srf_info /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_info /bin/sh ../libtool --mode=install /usr/bin/install -p 'srf_list' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_list' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib' /usr/bin/install -p .libs/srf_list /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_list make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/progs' Making install in tests make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4/tests' make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4' make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.12.4' test -z "/usr/bin" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin" /usr/bin/install -p 'staden-io_lib-config' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/staden-io_lib-config' test -z "/usr/share/man/man1" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man1" /usr/bin/install -p -m 644 './man/man1/srf_index_hash.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man1/srf_index_hash.1' /usr/bin/install -p -m 644 './man/man1/srf_info.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man1/srf_info.1' /usr/bin/install -p -m 644 './man/man1/srf_list.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man1/srf_list.1' /usr/bin/install -p -m 644 './man/man1/srf2fasta.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man1/srf2fasta.1' /usr/bin/install -p -m 644 './man/man1/srf2fastq.1' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man1/srf2fastq.1' test -z "/usr/share/man/man3" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man3" /usr/bin/install -p -m 644 './man/man3/read_scf_header.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man3/read_scf_header.3' /usr/bin/install -p -m 644 './man/man3/read_allocate.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man3/read_allocate.3' /usr/bin/install -p -m 644 './man/man3/ExperimentFile.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man3/ExperimentFile.3' /usr/bin/install -p -m 644 './man/man3/write_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man3/write_reading.3' /usr/bin/install -p -m 644 './man/man3/write_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man3/write_scf.3' /usr/bin/install -p -m 644 './man/man3/read_deallocate.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man3/read_deallocate.3' /usr/bin/install -p -m 644 './man/man3/fwrite_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man3/fwrite_reading.3' /usr/bin/install -p -m 644 './man/man3/read2scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man3/read2scf.3' /usr/bin/install -p -m 644 './man/man3/scf2read.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man3/scf2read.3' /usr/bin/install -p -m 644 './man/man3/fwrite_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man3/fwrite_scf.3' /usr/bin/install -p -m 644 './man/man3/write_scf_header.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man3/write_scf_header.3' /usr/bin/install -p -m 644 './man/man3/read_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man3/read_reading.3' /usr/bin/install -p -m 644 './man/man3/read_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man3/read_scf.3' /usr/bin/install -p -m 644 './man/man3/exp2read.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man3/exp2read.3' /usr/bin/install -p -m 644 './man/man3/fread_reading.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man3/fread_reading.3' /usr/bin/install -p -m 644 './man/man3/read2exp.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man3/read2exp.3' /usr/bin/install -p -m 644 './man/man3/fread_scf.3' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man3/fread_scf.3' test -z "/usr/share/man/man4" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man4" /usr/bin/install -p -m 644 './man/man4/Read.4' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/man/man4/Read.4' test -z "/usr/include/io_lib" || mkdir -p -- "/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib" /usr/bin/install -p -m 644 'io_lib/Read.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/Read.h' /usr/bin/install -p -m 644 'io_lib/scf_extras.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/scf_extras.h' /usr/bin/install -p -m 644 'io_lib/translate.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/translate.h' /usr/bin/install -p -m 644 'io_lib/abi.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/abi.h' /usr/bin/install -p -m 644 'io_lib/fpoint.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/fpoint.h' /usr/bin/install -p -m 644 'io_lib/seqIOABI.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/seqIOABI.h' /usr/bin/install -p -m 644 'io_lib/alf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/alf.h' /usr/bin/install -p -m 644 'io_lib/seqIOCTF.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/seqIOCTF.h' /usr/bin/install -p -m 644 'io_lib/expFileIO.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/expFileIO.h' /usr/bin/install -p -m 644 'io_lib/plain.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/plain.h' /usr/bin/install -p -m 644 'io_lib/scf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/scf.h' /usr/bin/install -p -m 644 'io_lib/sff.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/sff.h' /usr/bin/install -p -m 644 'io_lib/array.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/array.h' /usr/bin/install -p -m 644 'io_lib/compress.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/compress.h' /usr/bin/install -p -m 644 'io_lib/error.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/error.h' /usr/bin/install -p -m 644 'io_lib/mach-io.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/mach-io.h' /usr/bin/install -p -m 644 'io_lib/misc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/misc.h' /usr/bin/install -p -m 644 'io_lib/open_trace_file.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/open_trace_file.h' /usr/bin/install -p -m 644 'io_lib/tar_format.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/tar_format.h' /usr/bin/install -p -m 644 'io_lib/traceType.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/traceType.h' /usr/bin/install -p -m 644 'io_lib/xalloc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/xalloc.h' /usr/bin/install -p -m 644 'io_lib/mFILE.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/mFILE.h' /usr/bin/install -p -m 644 'io_lib/stdio_hack.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/stdio_hack.h' /usr/bin/install -p -m 644 'io_lib/vlen.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/vlen.h' /usr/bin/install -p -m 644 'io_lib/hash_table.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/hash_table.h' /usr/bin/install -p -m 644 'io_lib/jenkins_lookup3.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/jenkins_lookup3.h' /usr/bin/install -p -m 644 'io_lib/os.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/os.h' /usr/bin/install -p -m 644 'io_lib/compression.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/compression.h' /usr/bin/install -p -m 644 'io_lib/ztr.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/ztr.h' /usr/bin/install -p -m 644 'io_lib/deflate_interlaced.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/deflate_interlaced.h' /usr/bin/install -p -m 644 'io_lib/srf.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/srf.h' /usr/bin/install -p -m 644 'io_lib/pooled_alloc.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/pooled_alloc.h' /usr/bin/install -p -m 644 'io_lib_config.h' '/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/include/io_lib/io_lib_config.h' make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4' make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.12.4' + find /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386 -name '*.la' -delete + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.12.4-24.fc38 --unique-debug-suffix -1.12.4-24.fc38.i386 --unique-debug-src-base staden-io_lib-1.12.4-24.fc38.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/io_lib-1.12.4 extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/convert_trace extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/append_sff extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/extract_fastq extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/extract_qual extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/get_comment extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/extract_seq extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/hash_list extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/hash_extract extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/hash_sff extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/hash_tar extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/index_tar extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/makeSCF extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/scf_info extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/scf_dump extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/scf_update extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf2fasta extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_dump_all extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf2fastq extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_extract_hash extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_extract_linear extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_index_hash extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_filter extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_list extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/srf_info extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/trace_dump extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/bin/ztr_dump extracting debug info from /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/lib/libstaden-read.so.1.1.2 original debug info size: 1436kB, size after compression: 1300kB /usr/bin/sepdebugcrcfix: Updated 27 CRC32s, 0 CRC32s did match. 1828 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/staden-io_lib-config from /bin/sh to #!/usr/bin/sh + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: staden-io_lib-1.12.4-24.fc38.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.yBWo7y + umask 022 + cd /builddir/build/BUILD + cd io_lib-1.12.4 + DOCDIR=/builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/doc/staden-io_lib + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/doc/staden-io_lib + cp -pr README /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/doc/staden-io_lib + cp -pr COPYRIGHT /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/doc/staden-io_lib + cp -pr CHANGES /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/doc/staden-io_lib + cp -pr docs/ /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386/usr/share/doc/staden-io_lib + RPM_EC=0 ++ jobs -p + exit 0 Provides: libstaden-read.so.1 staden-io_lib = 1.12.4-24.fc38 staden-io_lib(x86-32) = 1.12.4-24.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.15) libc.so.6(GLIBC_2.28) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.33) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libcurl.so.4 libm.so.6 libm.so.6(GLIBC_2.29) libstaden-read.so.1 libz.so.1 rtld(GNU_HASH) Processing files: staden-io_lib-devel-1.12.4-24.fc38.i686 Provides: staden-io_lib-devel = 1.12.4-24.fc38 staden-io_lib-devel(x86-32) = 1.12.4-24.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh libstaden-read.so.1 Processing files: staden-io_lib-debugsource-1.12.4-24.fc38.i686 Provides: staden-io_lib-debugsource = 1.12.4-24.fc38 staden-io_lib-debugsource(x86-32) = 1.12.4-24.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: staden-io_lib-debuginfo-1.12.4-24.fc38.i686 Provides: debuginfo(build-id) = 00aaecd0bae44e3725042f62ec8b03b56b661f67 debuginfo(build-id) = 16bf40b56033544843631a6acf6b229d0db622a8 debuginfo(build-id) = 1a6ea50eb37fcbec9f37e8c7c2dc227ca15e8f6f debuginfo(build-id) = 24555037b4ae8bf831089d6a7a1e44fd07606b37 debuginfo(build-id) = 38718dbaa656f33a0e63e673eb09b416b19e560e debuginfo(build-id) = 402d501e19f9ab981fa85903296cc6df999ba989 debuginfo(build-id) = 465ec91702ba52371df45e6bbfc620a7362481bb debuginfo(build-id) = 541630975c9fd038da56bdfd13a4c3c46d7d8935 debuginfo(build-id) = 58fadef8d033e409059ee9598278838bb26a1fa3 debuginfo(build-id) = 5b161534e51fd1406696bf21045be6260db6b315 debuginfo(build-id) = 5c3ddf0c72f5cec19b004e4d5d8cd92031242e7e debuginfo(build-id) = 630e0e3df837a10d851f8a1755789057e1d65c83 debuginfo(build-id) = 6438839d789eddaefdda16a43754ee21efce229e debuginfo(build-id) = 76b87c425e426b68732df542ebcfd7d7ba76062b debuginfo(build-id) = 7749c82636156b09d602322d549bd9742f1b80e5 debuginfo(build-id) = 796dcbdee90f10fd27f0d64f800624ae5e4bbe10 debuginfo(build-id) = 7ecda823210c4a15b95d3ac2b76f2a957b2d7937 debuginfo(build-id) = 8a0069e77eb5cfabbb57d9a2d07a26eddf94030b debuginfo(build-id) = 8ddc708894daf344ac3561c089240fe070dac9b1 debuginfo(build-id) = 8f8613bbaa1c2604dbc5cc1913b455c6d57375c2 debuginfo(build-id) = 903f9a9e285e31263561f43819d44bed3d5c6ad7 debuginfo(build-id) = aef9ffb65c6909aa6a4b56d20ac6c5d1d33a8be0 debuginfo(build-id) = b02967c4383ce4bfdd01a907e444a23a53b794ea debuginfo(build-id) = c84d6de1ab92342e68867686d4def7c9a585862a debuginfo(build-id) = d0f895f74900a5e1bcb50cdb21e3c859ee880756 debuginfo(build-id) = e2848f152246b724910249003295b3546bde6ea0 debuginfo(build-id) = ef891a865dfae4acb6aebe60bf7dbc9e462aa918 libstaden-read.so.1.1.2-1.12.4-24.fc38.i386.debug staden-io_lib-debuginfo = 1.12.4-24.fc38 staden-io_lib-debuginfo(x86-32) = 1.12.4-24.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: staden-io_lib-debugsource(x86-32) = 1.12.4-24.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386 Wrote: /builddir/build/RPMS/staden-io_lib-debugsource-1.12.4-24.fc38.i686.rpm Wrote: /builddir/build/RPMS/staden-io_lib-debuginfo-1.12.4-24.fc38.i686.rpm Wrote: /builddir/build/RPMS/staden-io_lib-devel-1.12.4-24.fc38.i686.rpm Wrote: /builddir/build/RPMS/staden-io_lib-1.12.4-24.fc38.i686.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.HQztsz + umask 022 + cd /builddir/build/BUILD + cd io_lib-1.12.4 + /usr/bin/rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.12.4-24.fc38.i386 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.8LyrPD + umask 022 + cd /builddir/build/BUILD + rm -rf io_lib-1.12.4 io_lib-1.12.4.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0