Warning: Permanently added '54.204.101.173' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5168022 --chroot fedora-rawhide-i386 --detached
Version: 0.62
PID: 7145
Logging PID: 7146
Task:
{'appstream': False,
 'background': True,
 'build_id': 5168022,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-i386',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '70df7051292f782de4d6ae89ed70b7c47522e366',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/autodocksuite',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'autodocksuite',
 'package_version': '4.2.6-17',
 'project_dirname': 'gcc-13-test',
 'project_name': 'gcc-13-test',
 'project_owner': 'jakub',
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jakub/gcc-13-test/fedora-rawhide-i386/',
            'id': 'copr_base',
            'name': 'Copr repository'},
           {'baseurl': 'https://jakub.fedorapeople.org/fedora-gcc13-$arch/',
            'id': 'https_jakub_fedorapeople_org_fedora_gcc13_arch',
            'name': 'Additional repo https_jakub_fedorapeople_org_fedora_gcc13_arch'}],
 'sandbox': 'jakub/gcc-13-test--jakub',
 'source_json': {},
 'source_type': None,
 'submitter': 'jakub',
 'tags': [],
 'task_id': '5168022-fedora-rawhide-i386',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/autodocksuite /var/lib/copr-rpmbuild/workspace/workdir-qy8hfwpw/autodocksuite --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/autodocksuite', '/var/lib/copr-rpmbuild/workspace/workdir-qy8hfwpw/autodocksuite', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-qy8hfwpw/autodocksuite'...

Running: git checkout 70df7051292f782de4d6ae89ed70b7c47522e366

cmd: ['git', 'checkout', '70df7051292f782de4d6ae89ed70b7c47522e366']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-qy8hfwpw/autodocksuite
rc: 0
stdout: 
stderr: Note: switching to '70df7051292f782de4d6ae89ed70b7c47522e366'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 70df705 automatic import of autodocksuite

Running: copr-distgit-client sources

/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-qy8hfwpw/autodocksuite
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading autodocksuite-4.2.6-src.tar.gz
INFO: Calling: curl -H Pragma: -o autodocksuite-4.2.6-src.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jakub/gcc-13-test/autodocksuite/autodocksuite-4.2.6-src.tar.gz/md5/f4942c8e8c47aca7f3a2ae8794259067/autodocksuite-4.2.6-src.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 33.7M  100 33.7M    0     0  25.5M      0  0:00:01  0:00:01 --:--:-- 25.5M
INFO: Reading stdout from command: md5sum autodocksuite-4.2.6-src.tar.gz

Running (timeout=115200): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-qy8hfwpw/autodocksuite/autodocksuite.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-qy8hfwpw/autodocksuite --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1671789623.523985 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-qy8hfwpw/autodocksuite/autodocksuite.spec)  Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1671789623.523985/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start(bootstrap): dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  36 MB/s | 3.2 MB     00:00    
Additional repo https_jakub_fedorapeople_org_fe 463 kB/s |  86 kB     00:00    
local                                            69 MB/s |  60 MB     00:00    
Dependencies resolved.
=========================================================================================================================
 Package                         Arch    Version                    Repository                                       Size
=========================================================================================================================
Installing:
 dnf                             noarch  4.14.0-1.fc38              local                                           469 k
 dnf-plugins-core                noarch  4.3.1-1.fc38               local                                            34 k
Installing dependencies:
 alternatives                    i686    1.21-1.fc38                local                                            38 k
 audit-libs                      i686    3.0.9-2.fc38               local                                           122 k
 basesystem                      noarch  11-14.fc37                 local                                           7.0 k
 bash                            i686    5.2.9-3.fc38               local                                           1.8 M
 bzip2-libs                      i686    1.0.8-12.fc37              local                                            41 k
 ca-certificates                 noarch  2022.2.54-5.fc37           local                                           829 k
 coreutils                       i686    9.1-8.fc38                 local                                           1.1 M
 coreutils-common                i686    9.1-8.fc38                 local                                           2.0 M
 crypto-policies                 noarch  20221215-1.gita4c31a3.fc38 local                                            63 k
 curl                            i686    7.87.0-1.fc38              local                                           347 k
 cyrus-sasl-lib                  i686    2.1.28-8.fc38              local                                           857 k
 dbus-libs                       i686    1:1.14.4-1.fc38            local                                           167 k
 dnf-data                        noarch  4.14.0-1.fc38              local                                            43 k
 elfutils-default-yama-scope     noarch  0.188-3.fc38               local                                            15 k
 elfutils-libelf                 i686    0.188-3.fc38               local                                           203 k
 elfutils-libs                   i686    0.188-3.fc38               local                                           286 k
 expat                           i686    2.5.0-1.fc38               local                                           115 k
 fedora-gpg-keys                 noarch  38-0.3                     local                                           115 k
 fedora-release                  noarch  38-0.6                     local                                            11 k
 fedora-release-common           noarch  38-0.6                     local                                            21 k
 fedora-release-identity-basic   noarch  38-0.6                     local                                            11 k
 fedora-repos                    noarch  38-0.3                     local                                            10 k
 fedora-repos-rawhide            noarch  38-0.3                     local                                           9.7 k
 file-libs                       i686    5.42-4.fc37                local                                           684 k
 filesystem                      i686    3.18-2.fc37                local                                           1.1 M
 findutils                       i686    1:4.9.0-2.fc37             local                                           492 k
 gawk                            i686    5.1.1-4.fc37               local                                           1.0 M
 gdbm-libs                       i686    1:1.23-2.fc37              local                                            60 k
 glib2                           i686    2.74.1-2.fc38              local                                           2.8 M
 glibc                           i686    2.36.9000-19.fc38          local                                           1.9 M
 glibc-common                    i686    2.36.9000-19.fc38          local                                           315 k
 glibc-minimal-langpack          i686    2.36.9000-19.fc38          local                                            30 k
 gmp                             i686    1:6.2.1-3.fc37             local                                           305 k
 gnupg2                          i686    2.3.8-1.fc38               local                                           2.6 M
 gnutls                          i686    3.7.8-9.fc38               local                                           1.1 M
 gpgme                           i686    1.17.1-3.fc38              local                                           218 k
 grep                            i686    3.8-1.fc38                 local                                           289 k
 ima-evm-utils                   i686    1.4-6.fc37                 local                                            63 k
 json-c                          i686    0.16-3.fc38                local                                            44 k
 keyutils-libs                   i686    1.6.1-5.fc37               local                                            32 k
 krb5-libs                       i686    1.20.1-3.fc38              local                                           763 k
 libacl                          i686    2.3.1-4.fc38               copr_base                                        25 k
 libarchive                      i686    3.6.1-3.fc38               local                                           443 k
 libassuan                       i686    2.5.5-5.fc37               local                                            69 k
 libattr                         i686    2.5.1-5.fc38               copr_base                                        19 k
 libb2                           i686    0.98.1-7.fc37              local                                            35 k
 libblkid                        i686    2.38.1-3.fc38              local                                           116 k
 libbrotli                       i686    1.0.9-9.fc37               local                                           317 k
 libcap                          i686    2.48-5.fc37                local                                            68 k
 libcap-ng                       i686    0.8.3-4.fc38               local                                            33 k
 libcom_err                      i686    1.46.5-3.fc37              local                                            26 k
 libcomps                        i686    0.1.18-4.fc37              local                                            84 k
 libcurl                         i686    7.87.0-1.fc38              local                                           327 k
 libdnf                          i686    0.68.0-1.fc38              local                                           722 k
 libevent                        i686    2.1.12-7.fc37              local                                           279 k
 libffi                          i686    3.4.4-1.fc38               local                                            36 k
 libfsverity                     i686    1.4-8.fc37                 local                                            20 k
 libgcc                          i686    13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  101 k
 libgcrypt                       i686    1.10.1-6.fc38              local                                           484 k
 libgomp                         i686    13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  304 k
 libgpg-error                    i686    1.46-1.fc38                local                                           225 k
 libidn2                         i686    2.3.4-1.fc38               local                                           154 k
 libksba                         i686    1.6.3-1.fc38               local                                           161 k
 libmodulemd                     i686    2.14.0-4.fc37              local                                           241 k
 libmount                        i686    2.38.1-3.fc38              local                                           141 k
 libnghttp2                      i686    1.51.0-1.fc38              local                                            80 k
 libnsl2                         i686    2.0.0-4.fc37               local                                            31 k
 libpsl                          i686    0.21.1-6.fc37              local                                            64 k
 librepo                         i686    1.15.1-1.fc38              local                                           102 k
 libreport-filesystem            noarch  2.17.6-1.fc38              local                                            14 k
 libselinux                      i686    3.4-6.fc38                 local                                            91 k
 libsemanage                     i686    3.4-6.fc38                 local                                           128 k
 libsepol                        i686    3.4-4.fc38                 local                                           336 k
 libsigsegv                      i686    2.14-3.fc37                local                                            27 k
 libsmartcols                    i686    2.38.1-3.fc38              local                                            65 k
 libsolv                         i686    0.7.22-3.fc37              local                                           428 k
 libssh                          i686    0.10.4-2.fc38              local                                           222 k
 libssh-config                   noarch  0.10.4-2.fc38              local                                           8.8 k
 libstdc++                       i686    13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  857 k
 libtasn1                        i686    4.19.0-1.fc38              local                                            76 k
 libtirpc                        i686    1.3.3-0.fc37               local                                           101 k
 libunistring                    i686    1.0-2.fc37                 local                                           551 k
 libuuid                         i686    2.38.1-3.fc38              local                                            28 k
 libverto                        i686    0.3.2-4.fc37               local                                            21 k
 libxcrypt                       i686    4.4.33-5.fc38              local                                           123 k
 libxml2                         i686    2.10.3-2.fc38              local                                           745 k
 libyaml                         i686    0.2.5-8.fc37               local                                            62 k
 libzstd                         i686    1.5.2-3.fc37               local                                           274 k
 lua-libs                        i686    5.4.4-6.fc38               local                                           148 k
 lz4-libs                        i686    1.9.3-5.fc37               local                                            72 k
 mpdecimal                       i686    2.5.1-4.fc37               local                                           106 k
 mpfr                            i686    4.1.1-2.fc38               local                                           637 k
 ncurses-base                    noarch  6.3-5.20221126.fc38        local                                            61 k
 ncurses-libs                    i686    6.3-5.20221126.fc38        local                                           348 k
 nettle                          i686    3.8-2.fc37                 local                                           430 k
 npth                            i686    1.6-10.fc38                local                                            24 k
 openldap                        i686    2.6.3-1.fc38               local                                           273 k
 openssl-libs                    i686    1:3.0.5-6.fc38             local                                           2.1 M
 p11-kit                         i686    0.24.1-5.fc38              local                                           335 k
 p11-kit-trust                   i686    0.24.1-5.fc38              local                                           135 k
 pcre2                           i686    10.40-1.fc37.1             local                                           234 k
 pcre2-syntax                    noarch  10.40-1.fc37.1             local                                           142 k
 popt                            i686    1.19-1.fc38                local                                            61 k
 publicsuffix-list-dafsa         noarch  20221208-1.fc38            local                                            59 k
 python-pip-wheel                noarch  22.3.1-1.fc38              local                                           1.4 M
 python-setuptools-wheel         noarch  65.5.1-1.fc38              local                                           715 k
 python3                         i686    3.11.1-1.fc38              local                                            27 k
 python3-dateutil                noarch  1:2.8.2-4.fc37             local                                           350 k
 python3-dbus                    i686    1.3.2-1.fc38               local                                           150 k
 python3-distro                  noarch  1.8.0-1.fc38               local                                            45 k
 python3-dnf                     noarch  4.14.0-1.fc38              local                                           567 k
 python3-dnf-plugins-core        noarch  4.3.1-1.fc38               local                                           263 k
 python3-gpg                     i686    1.17.1-3.fc38              local                                           277 k
 python3-hawkey                  i686    0.68.0-1.fc38              local                                           111 k
 python3-libcomps                i686    0.1.18-4.fc37              local                                            51 k
 python3-libdnf                  i686    0.68.0-1.fc38              local                                           828 k
 python3-libs                    i686    3.11.1-1.fc38              local                                           9.3 M
 python3-rpm                     i686    4.18.0-8.fc38              local                                            95 k
 python3-six                     noarch  1.16.0-8.fc37              local                                            42 k
 readline                        i686    8.2-2.fc38                 local                                           218 k
 rpm                             i686    4.18.0-8.fc38              local                                           543 k
 rpm-build-libs                  i686    4.18.0-8.fc38              local                                           102 k
 rpm-libs                        i686    4.18.0-8.fc38              local                                           341 k
 rpm-sequoia                     i686    1.2.0-1.fc38               local                                           924 k
 rpm-sign-libs                   i686    4.18.0-8.fc38              local                                            27 k
 sed                             i686    4.8-11.fc37                local                                           300 k
 setup                           noarch  2.14.3-1.fc38              local                                           146 k
 shadow-utils                    i686    2:4.13-3.fc38              local                                           1.2 M
 sqlite-libs                     i686    3.40.0-1.fc38              local                                           705 k
 systemd-libs                    i686    252.4-598.fc38             local                                           662 k
 tpm2-tss                        i686    4.0.0-0.1.rc2.fc38         local                                           603 k
 tzdata                          noarch  2022g-1.fc38               local                                           432 k
 xz-libs                         i686    5.2.9-1.fc38               local                                           101 k
 zchunk-libs                     i686    1.2.3-1.fc38               local                                            54 k
 zlib                            i686    1.2.13-1.fc38              local                                            92 k

Transaction Summary
=========================================================================================================================
Install  137 Packages

Total download size: 57 M
Installed size: 199 M
Downloading Packages:
(1/137): libattr-2.5.1-5.fc38.i686.rpm          309 kB/s |  19 kB     00:00    
(2/137): libacl-2.3.1-4.fc38.i686.rpm           405 kB/s |  25 kB     00:00    
(3/137): libgcc-13.0.0-0.4.fc38.i686.rpm        724 kB/s | 101 kB     00:00    
(4/137): alternatives-1.21-1.fc38.i686.rpm      1.0 MB/s |  38 kB     00:00    
(5/137): audit-libs-3.0.9-2.fc38.i686.rpm        11 MB/s | 122 kB     00:00    
(6/137): basesystem-11-14.fc37.noarch.rpm       1.2 MB/s | 7.0 kB     00:00    
(7/137): libgomp-13.0.0-0.4.fc38.i686.rpm       2.1 MB/s | 304 kB     00:00    
(8/137): bzip2-libs-1.0.8-12.fc37.i686.rpm      1.1 MB/s |  41 kB     00:00    
(9/137): bash-5.2.9-3.fc38.i686.rpm              26 MB/s | 1.8 MB     00:00    
(10/137): libstdc++-13.0.0-0.4.fc38.i686.rpm    4.0 MB/s | 857 kB     00:00    
(11/137): ca-certificates-2022.2.54-5.fc37.noar  14 MB/s | 829 kB     00:00    
(12/137): coreutils-9.1-8.fc38.i686.rpm          27 MB/s | 1.1 MB     00:00    
(13/137): crypto-policies-20221215-1.gita4c31a3 7.8 MB/s |  63 kB     00:00    
(14/137): curl-7.87.0-1.fc38.i686.rpm            33 MB/s | 347 kB     00:00    
(15/137): dbus-libs-1.14.4-1.fc38.i686.rpm       30 MB/s | 167 kB     00:00    
(16/137): cyrus-sasl-lib-2.1.28-8.fc38.i686.rpm  34 MB/s | 857 kB     00:00    
(17/137): dnf-4.14.0-1.fc38.noarch.rpm           33 MB/s | 469 kB     00:00    
(18/137): dnf-data-4.14.0-1.fc38.noarch.rpm     8.3 MB/s |  43 kB     00:00    
(19/137): dnf-plugins-core-4.3.1-1.fc38.noarch. 7.7 MB/s |  34 kB     00:00    
(20/137): elfutils-default-yama-scope-0.188-3.f 2.9 MB/s |  15 kB     00:00    
(21/137): elfutils-libelf-0.188-3.fc38.i686.rpm  22 MB/s | 203 kB     00:00    
(22/137): elfutils-libs-0.188-3.fc38.i686.rpm    29 MB/s | 286 kB     00:00    
(23/137): expat-2.5.0-1.fc38.i686.rpm            18 MB/s | 115 kB     00:00    
(24/137): fedora-release-38-0.6.noarch.rpm      2.0 MB/s |  11 kB     00:00    
(25/137): fedora-gpg-keys-38-0.3.noarch.rpm      15 MB/s | 115 kB     00:00    
(26/137): fedora-release-common-38-0.6.noarch.r 3.9 MB/s |  21 kB     00:00    
(27/137): fedora-release-identity-basic-38-0.6. 2.5 MB/s |  11 kB     00:00    
(28/137): fedora-repos-38-0.3.noarch.rpm        2.0 MB/s |  10 kB     00:00    
(29/137): fedora-repos-rawhide-38-0.3.noarch.rp 1.9 MB/s | 9.7 kB     00:00    
(30/137): coreutils-common-9.1-8.fc38.i686.rpm   20 MB/s | 2.0 MB     00:00    
(31/137): file-libs-5.42-4.fc37.i686.rpm         45 MB/s | 684 kB     00:00    
(32/137): findutils-4.9.0-2.fc37.i686.rpm        35 MB/s | 492 kB     00:00    
(33/137): gdbm-libs-1.23-2.fc37.i686.rpm        8.3 MB/s |  60 kB     00:00    
(34/137): filesystem-3.18-2.fc37.i686.rpm        29 MB/s | 1.1 MB     00:00    
(35/137): gawk-5.1.1-4.fc37.i686.rpm             40 MB/s | 1.0 MB     00:00    
(36/137): glibc-common-2.36.9000-19.fc38.i686.r  29 MB/s | 315 kB     00:00    
(37/137): glibc-minimal-langpack-2.36.9000-19.f 5.5 MB/s |  30 kB     00:00    
(38/137): glib2-2.74.1-2.fc38.i686.rpm           61 MB/s | 2.8 MB     00:00    
(39/137): gmp-6.2.1-3.fc37.i686.rpm              21 MB/s | 305 kB     00:00    
(40/137): glibc-2.36.9000-19.fc38.i686.rpm       35 MB/s | 1.9 MB     00:00    
(41/137): gpgme-1.17.1-3.fc38.i686.rpm           22 MB/s | 218 kB     00:00    
(42/137): gnutls-3.7.8-9.fc38.i686.rpm           33 MB/s | 1.1 MB     00:00    
(43/137): ima-evm-utils-1.4-6.fc37.i686.rpm      16 MB/s |  63 kB     00:00    
(44/137): grep-3.8-1.fc38.i686.rpm               26 MB/s | 289 kB     00:00    
(45/137): gnupg2-2.3.8-1.fc38.i686.rpm           58 MB/s | 2.6 MB     00:00    
(46/137): json-c-0.16-3.fc38.i686.rpm           6.3 MB/s |  44 kB     00:00    
(47/137): keyutils-libs-1.6.1-5.fc37.i686.rpm   4.8 MB/s |  32 kB     00:00    
(48/137): libassuan-2.5.5-5.fc37.i686.rpm        17 MB/s |  69 kB     00:00    
(49/137): libb2-0.98.1-7.fc37.i686.rpm          7.6 MB/s |  35 kB     00:00    
(50/137): libarchive-3.6.1-3.fc38.i686.rpm       30 MB/s | 443 kB     00:00    
(51/137): krb5-libs-1.20.1-3.fc38.i686.rpm       45 MB/s | 763 kB     00:00    
(52/137): libblkid-2.38.1-3.fc38.i686.rpm        17 MB/s | 116 kB     00:00    
(53/137): libcap-2.48-5.fc37.i686.rpm            11 MB/s |  68 kB     00:00    
(54/137): libcap-ng-0.8.3-4.fc38.i686.rpm       5.7 MB/s |  33 kB     00:00    
(55/137): libbrotli-1.0.9-9.fc37.i686.rpm        29 MB/s | 317 kB     00:00    
(56/137): libcomps-0.1.18-4.fc37.i686.rpm        19 MB/s |  84 kB     00:00    
(57/137): libcom_err-1.46.5-3.fc37.i686.rpm     4.1 MB/s |  26 kB     00:00    
(58/137): libcurl-7.87.0-1.fc38.i686.rpm         31 MB/s | 327 kB     00:00    
(59/137): libevent-2.1.12-7.fc37.i686.rpm        26 MB/s | 279 kB     00:00    
(60/137): libffi-3.4.4-1.fc38.i686.rpm          6.1 MB/s |  36 kB     00:00    
(61/137): libdnf-0.68.0-1.fc38.i686.rpm          50 MB/s | 722 kB     00:00    
(62/137): libfsverity-1.4-8.fc37.i686.rpm       5.5 MB/s |  20 kB     00:00    
(63/137): libgpg-error-1.46-1.fc38.i686.rpm      32 MB/s | 225 kB     00:00    
(64/137): libidn2-2.3.4-1.fc38.i686.rpm          19 MB/s | 154 kB     00:00    
(65/137): libgcrypt-1.10.1-6.fc38.i686.rpm       43 MB/s | 484 kB     00:00    
(66/137): libksba-1.6.3-1.fc38.i686.rpm          31 MB/s | 161 kB     00:00    
(67/137): libmodulemd-2.14.0-4.fc37.i686.rpm     39 MB/s | 241 kB     00:00    
(68/137): libmount-2.38.1-3.fc38.i686.rpm        18 MB/s | 141 kB     00:00    
(69/137): libnghttp2-1.51.0-1.fc38.i686.rpm      13 MB/s |  80 kB     00:00    
(70/137): libnsl2-2.0.0-4.fc37.i686.rpm         5.4 MB/s |  31 kB     00:00    
(71/137): librepo-1.15.1-1.fc38.i686.rpm         22 MB/s | 102 kB     00:00    
(72/137): libpsl-0.21.1-6.fc37.i686.rpm         9.9 MB/s |  64 kB     00:00    
(73/137): libreport-filesystem-2.17.6-1.fc38.no 3.7 MB/s |  14 kB     00:00    
(74/137): libselinux-3.4-6.fc38.i686.rpm         12 MB/s |  91 kB     00:00    
(75/137): libsemanage-3.4-6.fc38.i686.rpm        15 MB/s | 128 kB     00:00    
(76/137): libsepol-3.4-4.fc38.i686.rpm           32 MB/s | 336 kB     00:00    
(77/137): libsigsegv-2.14-3.fc37.i686.rpm       4.8 MB/s |  27 kB     00:00    
(78/137): libsmartcols-2.38.1-3.fc38.i686.rpm    14 MB/s |  65 kB     00:00    
(79/137): libssh-config-0.10.4-2.fc38.noarch.rp 1.6 MB/s | 8.8 kB     00:00    
(80/137): libsolv-0.7.22-3.fc37.i686.rpm         43 MB/s | 428 kB     00:00    
(81/137): libssh-0.10.4-2.fc38.i686.rpm          24 MB/s | 222 kB     00:00    
(82/137): libtasn1-4.19.0-1.fc38.i686.rpm        13 MB/s |  76 kB     00:00    
(83/137): libtirpc-1.3.3-0.fc37.i686.rpm         16 MB/s | 101 kB     00:00    
(84/137): libuuid-2.38.1-3.fc38.i686.rpm        6.1 MB/s |  28 kB     00:00    
(85/137): libverto-0.3.2-4.fc37.i686.rpm        3.9 MB/s |  21 kB     00:00    
(86/137): libunistring-1.0-2.fc37.i686.rpm       44 MB/s | 551 kB     00:00    
(87/137): libxcrypt-4.4.33-5.fc38.i686.rpm       17 MB/s | 123 kB     00:00    
(88/137): libyaml-0.2.5-8.fc37.i686.rpm          14 MB/s |  62 kB     00:00    
(89/137): lua-libs-5.4.4-6.fc38.i686.rpm         18 MB/s | 148 kB     00:00    
(90/137): libzstd-1.5.2-3.fc37.i686.rpm          26 MB/s | 274 kB     00:00    
(91/137): libxml2-2.10.3-2.fc38.i686.rpm         44 MB/s | 745 kB     00:00    
(92/137): mpdecimal-2.5.1-4.fc37.i686.rpm        24 MB/s | 106 kB     00:00    
(93/137): lz4-libs-1.9.3-5.fc37.i686.rpm         11 MB/s |  72 kB     00:00    
(94/137): ncurses-base-6.3-5.20221126.fc38.noar 9.3 MB/s |  61 kB     00:00    
(95/137): mpfr-4.1.1-2.fc38.i686.rpm             43 MB/s | 637 kB     00:00    
(96/137): ncurses-libs-6.3-5.20221126.fc38.i686  30 MB/s | 348 kB     00:00    
(97/137): npth-1.6-10.fc38.i686.rpm             5.8 MB/s |  24 kB     00:00    
(98/137): nettle-3.8-2.fc37.i686.rpm             38 MB/s | 430 kB     00:00    
(99/137): openldap-2.6.3-1.fc38.i686.rpm         31 MB/s | 273 kB     00:00    
(100/137): p11-kit-trust-0.24.1-5.fc38.i686.rpm  15 MB/s | 135 kB     00:00    
(101/137): p11-kit-0.24.1-5.fc38.i686.rpm        26 MB/s | 335 kB     00:00    
(102/137): pcre2-syntax-10.40-1.fc37.1.noarch.r  16 MB/s | 142 kB     00:00    
(103/137): pcre2-10.40-1.fc37.1.i686.rpm         19 MB/s | 234 kB     00:00    
(104/137): popt-1.19-1.fc38.i686.rpm             11 MB/s |  61 kB     00:00    
(105/137): publicsuffix-list-dafsa-20221208-1.f  10 MB/s |  59 kB     00:00    
(106/137): openssl-libs-3.0.5-6.fc38.i686.rpm    59 MB/s | 2.1 MB     00:00    
(107/137): python3-3.11.1-1.fc38.i686.rpm       5.2 MB/s |  27 kB     00:00    
(108/137): python-setuptools-wheel-65.5.1-1.fc3  38 MB/s | 715 kB     00:00    
(109/137): python3-dateutil-2.8.2-4.fc37.noarch  31 MB/s | 350 kB     00:00    
(110/137): python-pip-wheel-22.3.1-1.fc38.noarc  55 MB/s | 1.4 MB     00:00    
(111/137): python3-distro-1.8.0-1.fc38.noarch.r 8.1 MB/s |  45 kB     00:00    
(112/137): python3-dbus-1.3.2-1.fc38.i686.rpm    12 MB/s | 150 kB     00:00    
(113/137): python3-dnf-plugins-core-4.3.1-1.fc3  28 MB/s | 263 kB     00:00    
(114/137): python3-dnf-4.14.0-1.fc38.noarch.rpm  41 MB/s | 567 kB     00:00    
(115/137): python3-gpg-1.17.1-3.fc38.i686.rpm    35 MB/s | 277 kB     00:00    
(116/137): python3-libcomps-0.1.18-4.fc37.i686.  13 MB/s |  51 kB     00:00    
(117/137): python3-hawkey-0.68.0-1.fc38.i686.rp  14 MB/s | 111 kB     00:00    
(118/137): python3-libdnf-0.68.0-1.fc38.i686.rp  43 MB/s | 828 kB     00:00    
(119/137): python3-six-1.16.0-8.fc37.noarch.rpm 8.8 MB/s |  42 kB     00:00    
(120/137): python3-rpm-4.18.0-8.fc38.i686.rpm   4.1 MB/s |  95 kB     00:00    
(121/137): readline-8.2-2.fc38.i686.rpm          20 MB/s | 218 kB     00:00    
(122/137): rpm-build-libs-4.18.0-8.fc38.i686.rp  15 MB/s | 102 kB     00:00    
(123/137): rpm-4.18.0-8.fc38.i686.rpm            34 MB/s | 543 kB     00:00    
(124/137): rpm-libs-4.18.0-8.fc38.i686.rpm       26 MB/s | 341 kB     00:00    
(125/137): rpm-sign-libs-4.18.0-8.fc38.i686.rpm 7.0 MB/s |  27 kB     00:00    
(126/137): rpm-sequoia-1.2.0-1.fc38.i686.rpm     44 MB/s | 924 kB     00:00    
(127/137): setup-2.14.3-1.fc38.noarch.rpm        20 MB/s | 146 kB     00:00    
(128/137): sed-4.8-11.fc37.i686.rpm              11 MB/s | 300 kB     00:00    
(129/137): shadow-utils-4.13-3.fc38.i686.rpm     47 MB/s | 1.2 MB     00:00    
(130/137): sqlite-libs-3.40.0-1.fc38.i686.rpm    31 MB/s | 705 kB     00:00    
(131/137): systemd-libs-252.4-598.fc38.i686.rpm  43 MB/s | 662 kB     00:00    
(132/137): python3-libs-3.11.1-1.fc38.i686.rpm   74 MB/s | 9.3 MB     00:00    
(133/137): tpm2-tss-4.0.0-0.1.rc2.fc38.i686.rpm  24 MB/s | 603 kB     00:00    
(134/137): tzdata-2022g-1.fc38.noarch.rpm        19 MB/s | 432 kB     00:00    
(135/137): xz-libs-5.2.9-1.fc38.i686.rpm         13 MB/s | 101 kB     00:00    
(136/137): zchunk-libs-1.2.3-1.fc38.i686.rpm     10 MB/s |  54 kB     00:00    
(137/137): zlib-1.2.13-1.fc38.i686.rpm           12 MB/s |  92 kB     00:00    
--------------------------------------------------------------------------------
Total                                            66 MB/s |  57 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-2.fc37.i686                            1/1 
  Preparing        :                                                        1/1 
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  Running scriptlet: libgcc-13.0.0-0.4.fc38.i686                          1/137 
  Installing       : crypto-policies-20221215-1.gita4c31a3.fc38.noarc     2/137 
  Running scriptlet: crypto-policies-20221215-1.gita4c31a3.fc38.noarc     2/137 
  Installing       : tzdata-2022g-1.fc38.noarch                           3/137 
  Installing       : fedora-release-identity-basic-38-0.6.noarch          4/137 
  Installing       : python-setuptools-wheel-65.5.1-1.fc38.noarch         5/137 
  Installing       : publicsuffix-list-dafsa-20221208-1.fc38.noarch       6/137 
  Installing       : pcre2-syntax-10.40-1.fc37.1.noarch                   7/137 
  Installing       : ncurses-base-6.3-5.20221126.fc38.noarch              8/137 
  Installing       : libssh-config-0.10.4-2.fc38.noarch                   9/137 
  Installing       : libreport-filesystem-2.17.6-1.fc38.noarch           10/137 
  Installing       : dnf-data-4.14.0-1.fc38.noarch                       11/137 
warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew

  Installing       : fedora-gpg-keys-38-0.3.noarch                       12/137 
  Installing       : fedora-release-38-0.6.noarch                        13/137 
  Installing       : fedora-release-common-38-0.6.noarch                 14/137 
  Installing       : fedora-repos-rawhide-38-0.3.noarch                  15/137 
  Installing       : fedora-repos-38-0.3.noarch                          16/137 
  Installing       : setup-2.14.3-1.fc38.noarch                          17/137 
  Running scriptlet: setup-2.14.3-1.fc38.noarch                          17/137 
  Installing       : filesystem-3.18-2.fc37.i686                         18/137 
  Installing       : basesystem-11-14.fc37.noarch                        19/137 
  Installing       : coreutils-common-9.1-8.fc38.i686                    20/137 
  Installing       : glibc-minimal-langpack-2.36.9000-19.fc38.i686       21/137 
  Installing       : glibc-common-2.36.9000-19.fc38.i686                 22/137 
  Running scriptlet: glibc-2.36.9000-19.fc38.i686                        23/137 
  Installing       : glibc-2.36.9000-19.fc38.i686                        23/137 
  Running scriptlet: glibc-2.36.9000-19.fc38.i686                        23/137 
  Installing       : ncurses-libs-6.3-5.20221126.fc38.i686               24/137 
  Installing       : bash-5.2.9-3.fc38.i686                              25/137 
  Running scriptlet: bash-5.2.9-3.fc38.i686                              25/137 
  Installing       : zlib-1.2.13-1.fc38.i686                             26/137 
  Installing       : bzip2-libs-1.0.8-12.fc37.i686                       27/137 
  Installing       : xz-libs-5.2.9-1.fc38.i686                           28/137 
  Installing       : libzstd-1.5.2-3.fc37.i686                           29/137 
  Installing       : sqlite-libs-3.40.0-1.fc38.i686                      30/137 
  Installing       : gmp-1:6.2.1-3.fc37.i686                             31/137 
  Installing       : libcap-2.48-5.fc37.i686                             32/137 
  Installing       : libgpg-error-1.46-1.fc38.i686                       33/137 
  Installing       : popt-1.19-1.fc38.i686                               34/137 
  Installing       : libxml2-2.10.3-2.fc38.i686                          35/137 
  Installing       : libstdc++-13.0.0-0.4.fc38.i686                      36/137 
  Installing       : libuuid-2.38.1-3.fc38.i686                          37/137 
  Installing       : lua-libs-5.4.4-6.fc38.i686                          38/137 
  Installing       : elfutils-libelf-0.188-3.fc38.i686                   39/137 
  Installing       : file-libs-5.42-4.fc37.i686                          40/137 
  Installing       : readline-8.2-2.fc38.i686                            41/137 
  Installing       : libattr-2.5.1-5.fc38.i686                           42/137 
  Installing       : libacl-2.3.1-4.fc38.i686                            43/137 
  Installing       : libffi-3.4.4-1.fc38.i686                            44/137 
  Installing       : p11-kit-0.24.1-5.fc38.i686                          45/137 
  Installing       : libunistring-1.0-2.fc37.i686                        46/137 
  Installing       : libidn2-2.3.4-1.fc38.i686                           47/137 
  Installing       : libxcrypt-4.4.33-5.fc38.i686                        48/137 
  Installing       : pcre2-10.40-1.fc37.1.i686                           49/137 
  Installing       : libassuan-2.5.5-5.fc37.i686                         50/137 
  Installing       : nettle-3.8-2.fc37.i686                              51/137 
  Installing       : rpm-sequoia-1.2.0-1.fc38.i686                       52/137 
  Installing       : libgomp-13.0.0-0.4.fc38.i686                        53/137 
  Installing       : expat-2.5.0-1.fc38.i686                             54/137 
  Installing       : gdbm-libs-1:1.23-2.fc37.i686                        55/137 
  Installing       : json-c-0.16-3.fc38.i686                             56/137 
  Installing       : keyutils-libs-1.6.1-5.fc37.i686                     57/137 
  Installing       : libcom_err-1.46.5-3.fc37.i686                       58/137 
  Installing       : libsepol-3.4-4.fc38.i686                            59/137 
  Installing       : libselinux-3.4-6.fc38.i686                          60/137 
  Installing       : sed-4.8-11.fc37.i686                                61/137 
  Installing       : libsmartcols-2.38.1-3.fc38.i686                     62/137 
  Installing       : libtasn1-4.19.0-1.fc38.i686                         63/137 
  Installing       : lz4-libs-1.9.3-5.fc37.i686                          64/137 
  Installing       : elfutils-default-yama-scope-0.188-3.fc38.noarch     65/137 
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  Installing       : elfutils-libs-0.188-3.fc38.i686                     66/137 
  Installing       : systemd-libs-252.4-598.fc38.i686                    67/137 
  Installing       : dbus-libs-1:1.14.4-1.fc38.i686                      68/137 
  Installing       : findutils-1:4.9.0-2.fc37.i686                       69/137 
  Installing       : cyrus-sasl-lib-2.1.28-8.fc38.i686                   70/137 
  Installing       : libcomps-0.1.18-4.fc37.i686                         71/137 
  Installing       : libb2-0.98.1-7.fc37.i686                            72/137 
  Installing       : grep-3.8-1.fc38.i686                                73/137 
  Installing       : libpsl-0.21.1-6.fc37.i686                           74/137 
  Installing       : libblkid-2.38.1-3.fc38.i686                         75/137 
  Installing       : libmount-2.38.1-3.fc38.i686                         76/137 
  Installing       : mpdecimal-2.5.1-4.fc37.i686                         77/137 
  Installing       : libgcrypt-1.10.1-6.fc38.i686                        78/137 
  Installing       : libksba-1.6.3-1.fc38.i686                           79/137 
  Installing       : mpfr-4.1.1-2.fc38.i686                              80/137 
  Installing       : alternatives-1.21-1.fc38.i686                       81/137 
  Installing       : p11-kit-trust-0.24.1-5.fc38.i686                    82/137 
  Running scriptlet: p11-kit-trust-0.24.1-5.fc38.i686                    82/137 
  Installing       : openssl-libs-1:3.0.5-6.fc38.i686                    83/137 
  Installing       : coreutils-9.1-8.fc38.i686                           84/137 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch             85/137 
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  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch             85/137 
  Installing       : libfsverity-1.4-8.fc37.i686                         86/137 
  Installing       : zchunk-libs-1.2.3-1.fc38.i686                       87/137 
  Installing       : gnutls-3.7.8-9.fc38.i686                            88/137 
  Installing       : python-pip-wheel-22.3.1-1.fc38.noarch               89/137 
  Installing       : glib2-2.74.1-2.fc38.i686                            90/137 
  Installing       : libarchive-3.6.1-3.fc38.i686                        91/137 
  Installing       : libevent-2.1.12-7.fc37.i686                         92/137 
  Installing       : openldap-2.6.3-1.fc38.i686                          93/137 
  Installing       : libbrotli-1.0.9-9.fc37.i686                         94/137 
  Installing       : libcap-ng-0.8.3-4.fc38.i686                         95/137 
  Installing       : audit-libs-3.0.9-2.fc38.i686                        96/137 
  Installing       : rpm-libs-4.18.0-8.fc38.i686                         97/137 
  Installing       : libsolv-0.7.22-3.fc37.i686                          98/137 
  Installing       : rpm-build-libs-4.18.0-8.fc38.i686                   99/137 
  Installing       : libsemanage-3.4-6.fc38.i686                        100/137 
  Installing       : shadow-utils-2:4.13-3.fc38.i686                    101/137 
  Installing       : libnghttp2-1.51.0-1.fc38.i686                      102/137 
  Installing       : libsigsegv-2.14-3.fc37.i686                        103/137 
  Installing       : gawk-5.1.1-4.fc37.i686                             104/137 
  Installing       : libverto-0.3.2-4.fc37.i686                         105/137 
  Installing       : krb5-libs-1.20.1-3.fc38.i686                       106/137 
  Installing       : libtirpc-1.3.3-0.fc37.i686                         107/137 
  Installing       : libnsl2-2.0.0-4.fc37.i686                          108/137 
  Installing       : python3-3.11.1-1.fc38.i686                         109/137 
  Installing       : python3-libs-3.11.1-1.fc38.i686                    110/137 
  Installing       : python3-distro-1.8.0-1.fc38.noarch                 111/137 
  Installing       : python3-six-1.16.0-8.fc37.noarch                   112/137 
  Installing       : python3-dbus-1.3.2-1.fc38.i686                     113/137 
  Installing       : python3-dateutil-1:2.8.2-4.fc37.noarch             114/137 
  Installing       : python3-libcomps-0.1.18-4.fc37.i686                115/137 
  Installing       : libssh-0.10.4-2.fc38.i686                          116/137 
  Installing       : libcurl-7.87.0-1.fc38.i686                         117/137 
  Installing       : curl-7.87.0-1.fc38.i686                            118/137 
  Running scriptlet: tpm2-tss-4.0.0-0.1.rc2.fc38.i686                   119/137 
useradd: Warning: missing or non-executable shell '/usr/sbin/nologin'

  Installing       : tpm2-tss-4.0.0-0.1.rc2.fc38.i686                   119/137 
  Installing       : ima-evm-utils-1.4-6.fc37.i686                      120/137 
  Installing       : libyaml-0.2.5-8.fc37.i686                          121/137 
  Installing       : libmodulemd-2.14.0-4.fc37.i686                     122/137 
  Installing       : npth-1.6-10.fc38.i686                              123/137 
  Installing       : gnupg2-2.3.8-1.fc38.i686                           124/137 
  Installing       : gpgme-1.17.1-3.fc38.i686                           125/137 
  Installing       : librepo-1.15.1-1.fc38.i686                         126/137 
  Installing       : libdnf-0.68.0-1.fc38.i686                          127/137 
  Installing       : python3-libdnf-0.68.0-1.fc38.i686                  128/137 
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  Installing       : python3-gpg-1.17.1-3.fc38.i686                     130/137 
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  Installing       : python3-dnf-plugins-core-4.3.1-1.fc38.noarch       134/137 
  Installing       : dnf-plugins-core-4.3.1-1.fc38.noarch               135/137 
  Installing       : dnf-4.14.0-1.fc38.noarch                           136/137 
  Running scriptlet: dnf-4.14.0-1.fc38.noarch                           136/137 
  Running scriptlet: rpm-4.18.0-8.fc38.i686                             137/137 
  Installing       : rpm-4.18.0-8.fc38.i686                             137/137 
  Running scriptlet: filesystem-3.18-2.fc37.i686                        137/137 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch            137/137 
  Running scriptlet: rpm-4.18.0-8.fc38.i686                             137/137 
  Verifying        : libacl-2.3.1-4.fc38.i686                             1/137 
  Verifying        : libattr-2.5.1-5.fc38.i686                            2/137 
  Verifying        : libgcc-13.0.0-0.4.fc38.i686                          3/137 
  Verifying        : libgomp-13.0.0-0.4.fc38.i686                         4/137 
  Verifying        : libstdc++-13.0.0-0.4.fc38.i686                       5/137 
  Verifying        : alternatives-1.21-1.fc38.i686                        6/137 
  Verifying        : audit-libs-3.0.9-2.fc38.i686                         7/137 
  Verifying        : basesystem-11-14.fc37.noarch                         8/137 
  Verifying        : bash-5.2.9-3.fc38.i686                               9/137 
  Verifying        : bzip2-libs-1.0.8-12.fc37.i686                       10/137 
  Verifying        : ca-certificates-2022.2.54-5.fc37.noarch             11/137 
  Verifying        : coreutils-9.1-8.fc38.i686                           12/137 
  Verifying        : coreutils-common-9.1-8.fc38.i686                    13/137 
  Verifying        : crypto-policies-20221215-1.gita4c31a3.fc38.noarc    14/137 
  Verifying        : curl-7.87.0-1.fc38.i686                             15/137 
  Verifying        : cyrus-sasl-lib-2.1.28-8.fc38.i686                   16/137 
  Verifying        : dbus-libs-1:1.14.4-1.fc38.i686                      17/137 
  Verifying        : dnf-4.14.0-1.fc38.noarch                            18/137 
  Verifying        : dnf-data-4.14.0-1.fc38.noarch                       19/137 
  Verifying        : dnf-plugins-core-4.3.1-1.fc38.noarch                20/137 
  Verifying        : elfutils-default-yama-scope-0.188-3.fc38.noarch     21/137 
  Verifying        : elfutils-libelf-0.188-3.fc38.i686                   22/137 
  Verifying        : elfutils-libs-0.188-3.fc38.i686                     23/137 
  Verifying        : expat-2.5.0-1.fc38.i686                             24/137 
  Verifying        : fedora-gpg-keys-38-0.3.noarch                       25/137 
  Verifying        : fedora-release-38-0.6.noarch                        26/137 
  Verifying        : fedora-release-common-38-0.6.noarch                 27/137 
  Verifying        : fedora-release-identity-basic-38-0.6.noarch         28/137 
  Verifying        : fedora-repos-38-0.3.noarch                          29/137 
  Verifying        : fedora-repos-rawhide-38-0.3.noarch                  30/137 
  Verifying        : file-libs-5.42-4.fc37.i686                          31/137 
  Verifying        : filesystem-3.18-2.fc37.i686                         32/137 
  Verifying        : findutils-1:4.9.0-2.fc37.i686                       33/137 
  Verifying        : gawk-5.1.1-4.fc37.i686                              34/137 
  Verifying        : gdbm-libs-1:1.23-2.fc37.i686                        35/137 
  Verifying        : glib2-2.74.1-2.fc38.i686                            36/137 
  Verifying        : glibc-2.36.9000-19.fc38.i686                        37/137 
  Verifying        : glibc-common-2.36.9000-19.fc38.i686                 38/137 
  Verifying        : glibc-minimal-langpack-2.36.9000-19.fc38.i686       39/137 
  Verifying        : gmp-1:6.2.1-3.fc37.i686                             40/137 
  Verifying        : gnupg2-2.3.8-1.fc38.i686                            41/137 
  Verifying        : gnutls-3.7.8-9.fc38.i686                            42/137 
  Verifying        : gpgme-1.17.1-3.fc38.i686                            43/137 
  Verifying        : grep-3.8-1.fc38.i686                                44/137 
  Verifying        : ima-evm-utils-1.4-6.fc37.i686                       45/137 
  Verifying        : json-c-0.16-3.fc38.i686                             46/137 
  Verifying        : keyutils-libs-1.6.1-5.fc37.i686                     47/137 
  Verifying        : krb5-libs-1.20.1-3.fc38.i686                        48/137 
  Verifying        : libarchive-3.6.1-3.fc38.i686                        49/137 
  Verifying        : libassuan-2.5.5-5.fc37.i686                         50/137 
  Verifying        : libb2-0.98.1-7.fc37.i686                            51/137 
  Verifying        : libblkid-2.38.1-3.fc38.i686                         52/137 
  Verifying        : libbrotli-1.0.9-9.fc37.i686                         53/137 
  Verifying        : libcap-2.48-5.fc37.i686                             54/137 
  Verifying        : libcap-ng-0.8.3-4.fc38.i686                         55/137 
  Verifying        : libcom_err-1.46.5-3.fc37.i686                       56/137 
  Verifying        : libcomps-0.1.18-4.fc37.i686                         57/137 
  Verifying        : libcurl-7.87.0-1.fc38.i686                          58/137 
  Verifying        : libdnf-0.68.0-1.fc38.i686                           59/137 
  Verifying        : libevent-2.1.12-7.fc37.i686                         60/137 
  Verifying        : libffi-3.4.4-1.fc38.i686                            61/137 
  Verifying        : libfsverity-1.4-8.fc37.i686                         62/137 
  Verifying        : libgcrypt-1.10.1-6.fc38.i686                        63/137 
  Verifying        : libgpg-error-1.46-1.fc38.i686                       64/137 
  Verifying        : libidn2-2.3.4-1.fc38.i686                           65/137 
  Verifying        : libksba-1.6.3-1.fc38.i686                           66/137 
  Verifying        : libmodulemd-2.14.0-4.fc37.i686                      67/137 
  Verifying        : libmount-2.38.1-3.fc38.i686                         68/137 
  Verifying        : libnghttp2-1.51.0-1.fc38.i686                       69/137 
  Verifying        : libnsl2-2.0.0-4.fc37.i686                           70/137 
  Verifying        : libpsl-0.21.1-6.fc37.i686                           71/137 
  Verifying        : librepo-1.15.1-1.fc38.i686                          72/137 
  Verifying        : libreport-filesystem-2.17.6-1.fc38.noarch           73/137 
  Verifying        : libselinux-3.4-6.fc38.i686                          74/137 
  Verifying        : libsemanage-3.4-6.fc38.i686                         75/137 
  Verifying        : libsepol-3.4-4.fc38.i686                            76/137 
  Verifying        : libsigsegv-2.14-3.fc37.i686                         77/137 
  Verifying        : libsmartcols-2.38.1-3.fc38.i686                     78/137 
  Verifying        : libsolv-0.7.22-3.fc37.i686                          79/137 
  Verifying        : libssh-0.10.4-2.fc38.i686                           80/137 
  Verifying        : libssh-config-0.10.4-2.fc38.noarch                  81/137 
  Verifying        : libtasn1-4.19.0-1.fc38.i686                         82/137 
  Verifying        : libtirpc-1.3.3-0.fc37.i686                          83/137 
  Verifying        : libunistring-1.0-2.fc37.i686                        84/137 
  Verifying        : libuuid-2.38.1-3.fc38.i686                          85/137 
  Verifying        : libverto-0.3.2-4.fc37.i686                          86/137 
  Verifying        : libxcrypt-4.4.33-5.fc38.i686                        87/137 
  Verifying        : libxml2-2.10.3-2.fc38.i686                          88/137 
  Verifying        : libyaml-0.2.5-8.fc37.i686                           89/137 
  Verifying        : libzstd-1.5.2-3.fc37.i686                           90/137 
  Verifying        : lua-libs-5.4.4-6.fc38.i686                          91/137 
  Verifying        : lz4-libs-1.9.3-5.fc37.i686                          92/137 
  Verifying        : mpdecimal-2.5.1-4.fc37.i686                         93/137 
  Verifying        : mpfr-4.1.1-2.fc38.i686                              94/137 
  Verifying        : ncurses-base-6.3-5.20221126.fc38.noarch             95/137 
  Verifying        : ncurses-libs-6.3-5.20221126.fc38.i686               96/137 
  Verifying        : nettle-3.8-2.fc37.i686                              97/137 
  Verifying        : npth-1.6-10.fc38.i686                               98/137 
  Verifying        : openldap-2.6.3-1.fc38.i686                          99/137 
  Verifying        : openssl-libs-1:3.0.5-6.fc38.i686                   100/137 
  Verifying        : p11-kit-0.24.1-5.fc38.i686                         101/137 
  Verifying        : p11-kit-trust-0.24.1-5.fc38.i686                   102/137 
  Verifying        : pcre2-10.40-1.fc37.1.i686                          103/137 
  Verifying        : pcre2-syntax-10.40-1.fc37.1.noarch                 104/137 
  Verifying        : popt-1.19-1.fc38.i686                              105/137 
  Verifying        : publicsuffix-list-dafsa-20221208-1.fc38.noarch     106/137 
  Verifying        : python-pip-wheel-22.3.1-1.fc38.noarch              107/137 
  Verifying        : python-setuptools-wheel-65.5.1-1.fc38.noarch       108/137 
  Verifying        : python3-3.11.1-1.fc38.i686                         109/137 
  Verifying        : python3-dateutil-1:2.8.2-4.fc37.noarch             110/137 
  Verifying        : python3-dbus-1.3.2-1.fc38.i686                     111/137 
  Verifying        : python3-distro-1.8.0-1.fc38.noarch                 112/137 
  Verifying        : python3-dnf-4.14.0-1.fc38.noarch                   113/137 
  Verifying        : python3-dnf-plugins-core-4.3.1-1.fc38.noarch       114/137 
  Verifying        : python3-gpg-1.17.1-3.fc38.i686                     115/137 
  Verifying        : python3-hawkey-0.68.0-1.fc38.i686                  116/137 
  Verifying        : python3-libcomps-0.1.18-4.fc37.i686                117/137 
  Verifying        : python3-libdnf-0.68.0-1.fc38.i686                  118/137 
  Verifying        : python3-libs-3.11.1-1.fc38.i686                    119/137 
  Verifying        : python3-rpm-4.18.0-8.fc38.i686                     120/137 
  Verifying        : python3-six-1.16.0-8.fc37.noarch                   121/137 
  Verifying        : readline-8.2-2.fc38.i686                           122/137 
  Verifying        : rpm-4.18.0-8.fc38.i686                             123/137 
  Verifying        : rpm-build-libs-4.18.0-8.fc38.i686                  124/137 
  Verifying        : rpm-libs-4.18.0-8.fc38.i686                        125/137 
  Verifying        : rpm-sequoia-1.2.0-1.fc38.i686                      126/137 
  Verifying        : rpm-sign-libs-4.18.0-8.fc38.i686                   127/137 
  Verifying        : sed-4.8-11.fc37.i686                               128/137 
  Verifying        : setup-2.14.3-1.fc38.noarch                         129/137 
  Verifying        : shadow-utils-2:4.13-3.fc38.i686                    130/137 
  Verifying        : sqlite-libs-3.40.0-1.fc38.i686                     131/137 
  Verifying        : systemd-libs-252.4-598.fc38.i686                   132/137 
  Verifying        : tpm2-tss-4.0.0-0.1.rc2.fc38.i686                   133/137 
  Verifying        : tzdata-2022g-1.fc38.noarch                         134/137 
  Verifying        : xz-libs-5.2.9-1.fc38.i686                          135/137 
  Verifying        : zchunk-libs-1.2.3-1.fc38.i686                      136/137 
  Verifying        : zlib-1.2.13-1.fc38.i686                            137/137 
Installed products updated.

Installed:
  alternatives-1.21-1.fc38.i686                                                 
  audit-libs-3.0.9-2.fc38.i686                                                  
  basesystem-11-14.fc37.noarch                                                  
  bash-5.2.9-3.fc38.i686                                                        
  bzip2-libs-1.0.8-12.fc37.i686                                                 
  ca-certificates-2022.2.54-5.fc37.noarch                                       
  coreutils-9.1-8.fc38.i686                                                     
  coreutils-common-9.1-8.fc38.i686                                              
  crypto-policies-20221215-1.gita4c31a3.fc38.noarch                             
  curl-7.87.0-1.fc38.i686                                                       
  cyrus-sasl-lib-2.1.28-8.fc38.i686                                             
  dbus-libs-1:1.14.4-1.fc38.i686                                                
  dnf-4.14.0-1.fc38.noarch                                                      
  dnf-data-4.14.0-1.fc38.noarch                                                 
  dnf-plugins-core-4.3.1-1.fc38.noarch                                          
  elfutils-default-yama-scope-0.188-3.fc38.noarch                               
  elfutils-libelf-0.188-3.fc38.i686                                             
  elfutils-libs-0.188-3.fc38.i686                                               
  expat-2.5.0-1.fc38.i686                                                       
  fedora-gpg-keys-38-0.3.noarch                                                 
  fedora-release-38-0.6.noarch                                                  
  fedora-release-common-38-0.6.noarch                                           
  fedora-release-identity-basic-38-0.6.noarch                                   
  fedora-repos-38-0.3.noarch                                                    
  fedora-repos-rawhide-38-0.3.noarch                                            
  file-libs-5.42-4.fc37.i686                                                    
  filesystem-3.18-2.fc37.i686                                                   
  findutils-1:4.9.0-2.fc37.i686                                                 
  gawk-5.1.1-4.fc37.i686                                                        
  gdbm-libs-1:1.23-2.fc37.i686                                                  
  glib2-2.74.1-2.fc38.i686                                                      
  glibc-2.36.9000-19.fc38.i686                                                  
  glibc-common-2.36.9000-19.fc38.i686                                           
  glibc-minimal-langpack-2.36.9000-19.fc38.i686                                 
  gmp-1:6.2.1-3.fc37.i686                                                       
  gnupg2-2.3.8-1.fc38.i686                                                      
  gnutls-3.7.8-9.fc38.i686                                                      
  gpgme-1.17.1-3.fc38.i686                                                      
  grep-3.8-1.fc38.i686                                                          
  ima-evm-utils-1.4-6.fc37.i686                                                 
  json-c-0.16-3.fc38.i686                                                       
  keyutils-libs-1.6.1-5.fc37.i686                                               
  krb5-libs-1.20.1-3.fc38.i686                                                  
  libacl-2.3.1-4.fc38.i686                                                      
  libarchive-3.6.1-3.fc38.i686                                                  
  libassuan-2.5.5-5.fc37.i686                                                   
  libattr-2.5.1-5.fc38.i686                                                     
  libb2-0.98.1-7.fc37.i686                                                      
  libblkid-2.38.1-3.fc38.i686                                                   
  libbrotli-1.0.9-9.fc37.i686                                                   
  libcap-2.48-5.fc37.i686                                                       
  libcap-ng-0.8.3-4.fc38.i686                                                   
  libcom_err-1.46.5-3.fc37.i686                                                 
  libcomps-0.1.18-4.fc37.i686                                                   
  libcurl-7.87.0-1.fc38.i686                                                    
  libdnf-0.68.0-1.fc38.i686                                                     
  libevent-2.1.12-7.fc37.i686                                                   
  libffi-3.4.4-1.fc38.i686                                                      
  libfsverity-1.4-8.fc37.i686                                                   
  libgcc-13.0.0-0.4.fc38.i686                                                   
  libgcrypt-1.10.1-6.fc38.i686                                                  
  libgomp-13.0.0-0.4.fc38.i686                                                  
  libgpg-error-1.46-1.fc38.i686                                                 
  libidn2-2.3.4-1.fc38.i686                                                     
  libksba-1.6.3-1.fc38.i686                                                     
  libmodulemd-2.14.0-4.fc37.i686                                                
  libmount-2.38.1-3.fc38.i686                                                   
  libnghttp2-1.51.0-1.fc38.i686                                                 
  libnsl2-2.0.0-4.fc37.i686                                                     
  libpsl-0.21.1-6.fc37.i686                                                     
  librepo-1.15.1-1.fc38.i686                                                    
  libreport-filesystem-2.17.6-1.fc38.noarch                                     
  libselinux-3.4-6.fc38.i686                                                    
  libsemanage-3.4-6.fc38.i686                                                   
  libsepol-3.4-4.fc38.i686                                                      
  libsigsegv-2.14-3.fc37.i686                                                   
  libsmartcols-2.38.1-3.fc38.i686                                               
  libsolv-0.7.22-3.fc37.i686                                                    
  libssh-0.10.4-2.fc38.i686                                                     
  libssh-config-0.10.4-2.fc38.noarch                                            
  libstdc++-13.0.0-0.4.fc38.i686                                                
  libtasn1-4.19.0-1.fc38.i686                                                   
  libtirpc-1.3.3-0.fc37.i686                                                    
  libunistring-1.0-2.fc37.i686                                                  
  libuuid-2.38.1-3.fc38.i686                                                    
  libverto-0.3.2-4.fc37.i686                                                    
  libxcrypt-4.4.33-5.fc38.i686                                                  
  libxml2-2.10.3-2.fc38.i686                                                    
  libyaml-0.2.5-8.fc37.i686                                                     
  libzstd-1.5.2-3.fc37.i686                                                     
  lua-libs-5.4.4-6.fc38.i686                                                    
  lz4-libs-1.9.3-5.fc37.i686                                                    
  mpdecimal-2.5.1-4.fc37.i686                                                   
  mpfr-4.1.1-2.fc38.i686                                                        
  ncurses-base-6.3-5.20221126.fc38.noarch                                       
  ncurses-libs-6.3-5.20221126.fc38.i686                                         
  nettle-3.8-2.fc37.i686                                                        
  npth-1.6-10.fc38.i686                                                         
  openldap-2.6.3-1.fc38.i686                                                    
  openssl-libs-1:3.0.5-6.fc38.i686                                              
  p11-kit-0.24.1-5.fc38.i686                                                    
  p11-kit-trust-0.24.1-5.fc38.i686                                              
  pcre2-10.40-1.fc37.1.i686                                                     
  pcre2-syntax-10.40-1.fc37.1.noarch                                            
  popt-1.19-1.fc38.i686                                                         
  publicsuffix-list-dafsa-20221208-1.fc38.noarch                                
  python-pip-wheel-22.3.1-1.fc38.noarch                                         
  python-setuptools-wheel-65.5.1-1.fc38.noarch                                  
  python3-3.11.1-1.fc38.i686                                                    
  python3-dateutil-1:2.8.2-4.fc37.noarch                                        
  python3-dbus-1.3.2-1.fc38.i686                                                
  python3-distro-1.8.0-1.fc38.noarch                                            
  python3-dnf-4.14.0-1.fc38.noarch                                              
  python3-dnf-plugins-core-4.3.1-1.fc38.noarch                                  
  python3-gpg-1.17.1-3.fc38.i686                                                
  python3-hawkey-0.68.0-1.fc38.i686                                             
  python3-libcomps-0.1.18-4.fc37.i686                                           
  python3-libdnf-0.68.0-1.fc38.i686                                             
  python3-libs-3.11.1-1.fc38.i686                                               
  python3-rpm-4.18.0-8.fc38.i686                                                
  python3-six-1.16.0-8.fc37.noarch                                              
  readline-8.2-2.fc38.i686                                                      
  rpm-4.18.0-8.fc38.i686                                                        
  rpm-build-libs-4.18.0-8.fc38.i686                                             
  rpm-libs-4.18.0-8.fc38.i686                                                   
  rpm-sequoia-1.2.0-1.fc38.i686                                                 
  rpm-sign-libs-4.18.0-8.fc38.i686                                              
  sed-4.8-11.fc37.i686                                                          
  setup-2.14.3-1.fc38.noarch                                                    
  shadow-utils-2:4.13-3.fc38.i686                                               
  sqlite-libs-3.40.0-1.fc38.i686                                                
  systemd-libs-252.4-598.fc38.i686                                              
  tpm2-tss-4.0.0-0.1.rc2.fc38.i686                                              
  tzdata-2022g-1.fc38.noarch                                                    
  xz-libs-5.2.9-1.fc38.i686                                                     
  zchunk-libs-1.2.3-1.fc38.i686                                                 
  zlib-1.2.13-1.fc38.i686                                                       

Complete!
Finish(bootstrap): dnf install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1671789623.523985/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  31 MB/s | 3.2 MB     00:00    
Additional repo https_jakub_fedorapeople_org_fe 137 kB/s |  86 kB     00:00    
local                                            47 MB/s |  60 MB     00:01    
Dependencies resolved.
=========================================================================================================================
 Package                         Arch    Version                    Repository                                       Size
=========================================================================================================================
Installing group/module packages:
 bash                            i686    5.2.9-3.fc38               local                                           1.8 M
 bzip2                           i686    1.0.8-12.fc37              local                                            53 k
 coreutils                       i686    9.1-8.fc38                 local                                           1.1 M
 cpio                            i686    2.13-13.fc38               local                                           275 k
 diffutils                       i686    3.8-3.fc37                 local                                           375 k
 fedora-release                  noarch  38-0.6                     local                                            11 k
 findutils                       i686    1:4.9.0-2.fc37             local                                           492 k
 gawk                            i686    5.1.1-4.fc37               local                                           1.0 M
 glibc-minimal-langpack          i686    2.36.9000-19.fc38          local                                            30 k
 grep                            i686    3.8-1.fc38                 local                                           289 k
 gzip                            i686    1.12-2.fc37                local                                           157 k
 info                            i686    7.0.1-1.fc38               local                                           183 k
 patch                           i686    2.7.6-17.fc37              local                                           137 k
 redhat-rpm-config               noarch  235-1.fc38                 local                                            74 k
 rpm-build                       i686    4.18.0-8.fc38              local                                            69 k
 sed                             i686    4.8-11.fc37                local                                           300 k
 shadow-utils                    i686    2:4.13-3.fc38              local                                           1.2 M
 tar                             i686    2:1.34-5.fc38              local                                           892 k
 unzip                           i686    6.0-58.fc38                local                                           177 k
 util-linux                      i686    2.38.1-3.fc38              local                                           2.3 M
 which                           i686    2.21-36.fc38               local                                            42 k
 xz                              i686    5.2.9-1.fc38               local                                           300 k
Installing dependencies:
 alternatives                    i686    1.21-1.fc38                local                                            38 k
 ansible-srpm-macros             noarch  1-8.1.fc38                 local                                           8.6 k
 audit-libs                      i686    3.0.9-2.fc38               local                                           122 k
 authselect                      i686    1.4.2-1.fc38               copr_base                                       141 k
 authselect-libs                 i686    1.4.2-1.fc38               copr_base                                       239 k
 basesystem                      noarch  11-14.fc37                 local                                           7.0 k
 binutils                        i686    2.39-6.fc38                local                                           5.6 M
 binutils-gold                   i686    2.39-6.fc38                local                                           841 k
 bzip2-libs                      i686    1.0.8-12.fc37              local                                            41 k
 ca-certificates                 noarch  2022.2.54-5.fc37           local                                           829 k
 coreutils-common                i686    9.1-8.fc38                 local                                           2.0 M
 cracklib                        i686    2.9.7-30.fc38              local                                            81 k
 crypto-policies                 noarch  20221215-1.gita4c31a3.fc38 local                                            63 k
 curl                            i686    7.87.0-1.fc38              local                                           347 k
 cyrus-sasl-lib                  i686    2.1.28-8.fc38              local                                           857 k
 debugedit                       i686    5.0-5.fc37                 local                                            78 k
 dwz                             i686    0.15-1.fc38                local                                           144 k
 ed                              i686    1.18-2.fc37                local                                            78 k
 efi-srpm-macros                 noarch  5-6.fc37                   local                                            22 k
 elfutils                        i686    0.188-3.fc38               local                                           540 k
 elfutils-debuginfod-client      i686    0.188-3.fc38               local                                            41 k
 elfutils-default-yama-scope     noarch  0.188-3.fc38               local                                            15 k
 elfutils-libelf                 i686    0.188-3.fc38               local                                           203 k
 elfutils-libs                   i686    0.188-3.fc38               local                                           286 k
 fedora-gpg-keys                 noarch  38-0.3                     local                                           115 k
 fedora-release-common           noarch  38-0.6                     local                                            21 k
 fedora-release-identity-basic   noarch  38-0.6                     local                                            11 k
 fedora-repos                    noarch  38-0.3                     local                                            10 k
 fedora-repos-rawhide            noarch  38-0.3                     local                                           9.7 k
 file                            i686    5.42-4.fc37                local                                            49 k
 file-libs                       i686    5.42-4.fc37                local                                           684 k
 filesystem                      i686    3.18-2.fc37                local                                           1.1 M
 fonts-srpm-macros               noarch  1:2.0.5-10.fc38            local                                            26 k
 fpc-srpm-macros                 noarch  1.3-6.fc37                 local                                           7.7 k
 gdb-minimal                     i686    12.1-10.fc38               local                                           3.9 M
 gdbm-libs                       i686    1:1.23-2.fc37              local                                            60 k
 ghc-srpm-macros                 noarch  1.5.0-7.fc37               local                                           7.8 k
 glibc                           i686    2.36.9000-19.fc38          local                                           1.9 M
 glibc-common                    i686    2.36.9000-19.fc38          local                                           315 k
 glibc-gconv-extra               i686    2.36.9000-19.fc38          local                                           1.6 M
 gmp                             i686    1:6.2.1-3.fc37             local                                           305 k
 gnat-srpm-macros                noarch  4-16.fc37                  local                                           8.3 k
 go-srpm-macros                  noarch  3.2.0-1.fc38               local                                            27 k
 jansson                         i686    2.13.1-5.fc37              local                                            46 k
 kernel-srpm-macros              noarch  1.0-15.fc37                local                                           9.4 k
 keyutils-libs                   i686    1.6.1-5.fc37               local                                            32 k
 krb5-libs                       i686    1.20.1-3.fc38              local                                           763 k
 libacl                          i686    2.3.1-4.fc38               copr_base                                        25 k
 libarchive                      i686    3.6.1-3.fc38               local                                           443 k
 libattr                         i686    2.5.1-5.fc38               copr_base                                        19 k
 libblkid                        i686    2.38.1-3.fc38              local                                           116 k
 libbrotli                       i686    1.0.9-9.fc37               local                                           317 k
 libcap                          i686    2.48-5.fc37                local                                            68 k
 libcap-ng                       i686    0.8.3-4.fc38               local                                            33 k
 libcom_err                      i686    1.46.5-3.fc37              local                                            26 k
 libcurl                         i686    7.87.0-1.fc38              local                                           327 k
 libdb                           i686    5.3.28-54.fc38             local                                           827 k
 libeconf                        i686    0.4.0-4.fc37               local                                            29 k
 libevent                        i686    2.1.12-7.fc37              local                                           279 k
 libfdisk                        i686    2.38.1-3.fc38              local                                           173 k
 libffi                          i686    3.4.4-1.fc38               local                                            36 k
 libgcc                          i686    13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  101 k
 libgomp                         i686    13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  304 k
 libidn2                         i686    2.3.4-1.fc38               local                                           154 k
 libmount                        i686    2.38.1-3.fc38              local                                           141 k
 libnghttp2                      i686    1.51.0-1.fc38              local                                            80 k
 libnsl2                         i686    2.0.0-4.fc37               local                                            31 k
 libpkgconf                      i686    1.8.0-3.fc37               local                                            38 k
 libpsl                          i686    0.21.1-6.fc37              local                                            64 k
 libpwquality                    i686    1.4.4-11.fc37              local                                           106 k
 libselinux                      i686    3.4-6.fc38                 local                                            91 k
 libsemanage                     i686    3.4-6.fc38                 local                                           128 k
 libsepol                        i686    3.4-4.fc38                 local                                           336 k
 libsigsegv                      i686    2.14-3.fc37                local                                            27 k
 libsmartcols                    i686    2.38.1-3.fc38              local                                            65 k
 libssh                          i686    0.10.4-2.fc38              local                                           222 k
 libssh-config                   noarch  0.10.4-2.fc38              local                                           8.8 k
 libstdc++                       i686    13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  857 k
 libtasn1                        i686    4.19.0-1.fc38              local                                            76 k
 libtirpc                        i686    1.3.3-0.fc37               local                                           101 k
 libunistring                    i686    1.0-2.fc37                 local                                           551 k
 libutempter                     i686    1.2.1-7.fc37               local                                            26 k
 libuuid                         i686    2.38.1-3.fc38              local                                            28 k
 libverto                        i686    0.3.2-4.fc37               local                                            21 k
 libxcrypt                       i686    4.4.33-5.fc38              local                                           123 k
 libxml2                         i686    2.10.3-2.fc38              local                                           745 k
 libzstd                         i686    1.5.2-3.fc37               local                                           274 k
 lua-libs                        i686    5.4.4-6.fc38               local                                           148 k
 lua-srpm-macros                 noarch  1-7.fc37                   local                                           8.8 k
 lz4-libs                        i686    1.9.3-5.fc37               local                                            72 k
 mpfr                            i686    4.1.1-2.fc38               local                                           637 k
 ncurses-base                    noarch  6.3-5.20221126.fc38        local                                            61 k
 ncurses-libs                    i686    6.3-5.20221126.fc38        local                                           348 k
 nettle                          i686    3.8-2.fc37                 local                                           430 k
 nim-srpm-macros                 noarch  3-7.fc37                   local                                           8.4 k
 ocaml-srpm-macros               noarch  7-2.fc37                   local                                            13 k
 openblas-srpm-macros            noarch  2-12.fc37                  local                                           7.5 k
 openldap                        i686    2.6.3-1.fc38               local                                           273 k
 openssl-libs                    i686    1:3.0.5-6.fc38             local                                           2.1 M
 p11-kit                         i686    0.24.1-5.fc38              local                                           335 k
 p11-kit-trust                   i686    0.24.1-5.fc38              local                                           135 k
 package-notes-srpm-macros       noarch  0.5-6.fc38                 local                                            11 k
 pam                             i686    1.5.2-15.fc38              local                                           535 k
 pam-libs                        i686    1.5.2-15.fc38              local                                            60 k
 pcre2                           i686    10.40-1.fc37.1             local                                           234 k
 pcre2-syntax                    noarch  10.40-1.fc37.1             local                                           142 k
 perl-srpm-macros                noarch  1-47.fc38                  local                                           8.2 k
 pkgconf                         i686    1.8.0-3.fc37               local                                            42 k
 pkgconf-m4                      noarch  1.8.0-3.fc37               local                                            14 k
 pkgconf-pkg-config              i686    1.8.0-3.fc37               local                                            10 k
 popt                            i686    1.19-1.fc38                local                                            61 k
 publicsuffix-list-dafsa         noarch  20221208-1.fc38            local                                            59 k
 python-srpm-macros              noarch  3.11-6.fc38                local                                            25 k
 qt5-srpm-macros                 noarch  5.15.7-1.fc38              local                                           7.9 k
 readline                        i686    8.2-2.fc38                 local                                           218 k
 rpm                             i686    4.18.0-8.fc38              local                                           543 k
 rpm-build-libs                  i686    4.18.0-8.fc38              local                                           102 k
 rpm-libs                        i686    4.18.0-8.fc38              local                                           341 k
 rpm-sequoia                     i686    1.2.0-1.fc38               local                                           924 k
 rpmautospec-rpm-macros          noarch  0.3.1-1.fc38               local                                           8.8 k
 rust-srpm-macros                noarch  23-1.fc38                  local                                           9.4 k
 setup                           noarch  2.14.3-1.fc38              local                                           146 k
 sqlite-libs                     i686    3.40.0-1.fc38              local                                           705 k
 systemd-libs                    i686    252.4-598.fc38             local                                           662 k
 tzdata                          noarch  2022g-1.fc38               local                                           432 k
 util-linux-core                 i686    2.38.1-3.fc38              local                                           467 k
 xxhash-libs                     i686    0.8.1-3.fc37               local                                            59 k
 xz-libs                         i686    5.2.9-1.fc38               local                                           101 k
 zip                             i686    3.0-35.fc38                local                                           263 k
 zlib                            i686    1.2.13-1.fc38              local                                            92 k
 zstd                            i686    1.5.2-3.fc37               local                                           418 k
Installing Groups:
 build                                                                                                                   

Transaction Summary
=========================================================================================================================
Install  153 Packages

Total download size: 53 M
Installed size: 179 M
Downloading Packages:
(1/153): libacl-2.3.1-4.fc38.i686.rpm           106 kB/s |  25 kB     00:00    
(2/153): authselect-libs-1.4.2-1.fc38.i686.rpm  983 kB/s | 239 kB     00:00    
(3/153): authselect-1.4.2-1.fc38.i686.rpm       576 kB/s | 141 kB     00:00    
(4/153): libattr-2.5.1-5.fc38.i686.rpm          3.8 MB/s |  19 kB     00:00    
(5/153): libgcc-13.0.0-0.4.fc38.i686.rpm        337 kB/s | 101 kB     00:00    
(6/153): libgomp-13.0.0-0.4.fc38.i686.rpm       971 kB/s | 304 kB     00:00    
(7/153): alternatives-1.21-1.fc38.i686.rpm      1.4 MB/s |  38 kB     00:00    
(8/153): libstdc++-13.0.0-0.4.fc38.i686.rpm     2.5 MB/s | 857 kB     00:00    
(9/153): ansible-srpm-macros-1-8.1.fc38.noarch. 373 kB/s | 8.6 kB     00:00    
(10/153): audit-libs-3.0.9-2.fc38.i686.rpm       12 MB/s | 122 kB     00:00    
(11/153): basesystem-11-14.fc37.noarch.rpm      363 kB/s | 7.0 kB     00:00    
(12/153): bash-5.2.9-3.fc38.i686.rpm             62 MB/s | 1.8 MB     00:00    
(13/153): bzip2-1.0.8-12.fc37.i686.rpm          6.1 MB/s |  53 kB     00:00    
(14/153): binutils-gold-2.39-6.fc38.i686.rpm     33 MB/s | 841 kB     00:00    
(15/153): bzip2-libs-1.0.8-12.fc37.i686.rpm      11 MB/s |  41 kB     00:00    
(16/153): ca-certificates-2022.2.54-5.fc37.noar  49 MB/s | 829 kB     00:00    
(17/153): coreutils-9.1-8.fc38.i686.rpm          35 MB/s | 1.1 MB     00:00    
(18/153): coreutils-common-9.1-8.fc38.i686.rpm   71 MB/s | 2.0 MB     00:00    
(19/153): cpio-2.13-13.fc38.i686.rpm             22 MB/s | 275 kB     00:00    
(20/153): crypto-policies-20221215-1.gita4c31a3  14 MB/s |  63 kB     00:00    
(21/153): cracklib-2.9.7-30.fc38.i686.rpm       5.9 MB/s |  81 kB     00:00    
(22/153): curl-7.87.0-1.fc38.i686.rpm            20 MB/s | 347 kB     00:00    
(23/153): binutils-2.39-6.fc38.i686.rpm          45 MB/s | 5.6 MB     00:00    
(24/153): cyrus-sasl-lib-2.1.28-8.fc38.i686.rpm  38 MB/s | 857 kB     00:00    
(25/153): debugedit-5.0-5.fc37.i686.rpm         6.6 MB/s |  78 kB     00:00    
(26/153): ed-1.18-2.fc37.i686.rpm                12 MB/s |  78 kB     00:00    
(27/153): dwz-0.15-1.fc38.i686.rpm               17 MB/s | 144 kB     00:00    
(28/153): diffutils-3.8-3.fc37.i686.rpm          30 MB/s | 375 kB     00:00    
(29/153): efi-srpm-macros-5-6.fc37.noarch.rpm   3.7 MB/s |  22 kB     00:00    
(30/153): elfutils-0.188-3.fc38.i686.rpm         47 MB/s | 540 kB     00:00    
(31/153): elfutils-debuginfod-client-0.188-3.fc 3.8 MB/s |  41 kB     00:00    
(32/153): elfutils-default-yama-scope-0.188-3.f 2.0 MB/s |  15 kB     00:00    
(33/153): elfutils-libelf-0.188-3.fc38.i686.rpm  31 MB/s | 203 kB     00:00    
(34/153): elfutils-libs-0.188-3.fc38.i686.rpm    41 MB/s | 286 kB     00:00    
(35/153): fedora-gpg-keys-38-0.3.noarch.rpm      12 MB/s | 115 kB     00:00    
(36/153): fedora-release-38-0.6.noarch.rpm      2.5 MB/s |  11 kB     00:00    
(37/153): fedora-release-common-38-0.6.noarch.r 5.0 MB/s |  21 kB     00:00    
(38/153): fedora-repos-38-0.3.noarch.rpm        3.2 MB/s |  10 kB     00:00    
(39/153): fedora-release-identity-basic-38-0.6. 1.6 MB/s |  11 kB     00:00    
(40/153): fedora-repos-rawhide-38-0.3.noarch.rp 1.3 MB/s | 9.7 kB     00:00    
(41/153): file-5.42-4.fc37.i686.rpm             5.0 MB/s |  49 kB     00:00    
(42/153): file-libs-5.42-4.fc37.i686.rpm         47 MB/s | 684 kB     00:00    
(43/153): filesystem-3.18-2.fc37.i686.rpm        62 MB/s | 1.1 MB     00:00    
(44/153): findutils-4.9.0-2.fc37.i686.rpm        37 MB/s | 492 kB     00:00    
(45/153): fonts-srpm-macros-2.0.5-10.fc38.noarc 4.6 MB/s |  26 kB     00:00    
(46/153): fpc-srpm-macros-1.3-6.fc37.noarch.rpm 466 kB/s | 7.7 kB     00:00    
(47/153): gawk-5.1.1-4.fc37.i686.rpm             56 MB/s | 1.0 MB     00:00    
(48/153): gdbm-libs-1.23-2.fc37.i686.rpm         11 MB/s |  60 kB     00:00    
(49/153): ghc-srpm-macros-1.5.0-7.fc37.noarch.r 587 kB/s | 7.8 kB     00:00    
(50/153): gdb-minimal-12.1-10.fc38.i686.rpm      72 MB/s | 3.9 MB     00:00    
(51/153): glibc-common-2.36.9000-19.fc38.i686.r  13 MB/s | 315 kB     00:00    
(52/153): glibc-2.36.9000-19.fc38.i686.rpm       53 MB/s | 1.9 MB     00:00    
(53/153): glibc-minimal-langpack-2.36.9000-19.f 8.4 MB/s |  30 kB     00:00    
(54/153): gmp-6.2.1-3.fc37.i686.rpm              45 MB/s | 305 kB     00:00    
(55/153): gnat-srpm-macros-4-16.fc37.noarch.rpm 1.3 MB/s | 8.3 kB     00:00    
(56/153): go-srpm-macros-3.2.0-1.fc38.noarch.rp 3.7 MB/s |  27 kB     00:00    
(57/153): grep-3.8-1.fc38.i686.rpm               36 MB/s | 289 kB     00:00    
(58/153): glibc-gconv-extra-2.36.9000-19.fc38.i  53 MB/s | 1.6 MB     00:00    
(59/153): gzip-1.12-2.fc37.i686.rpm              12 MB/s | 157 kB     00:00    
(60/153): info-7.0.1-1.fc38.i686.rpm             15 MB/s | 183 kB     00:00    
(61/153): kernel-srpm-macros-1.0-15.fc37.noarch 1.1 MB/s | 9.4 kB     00:00    
(62/153): jansson-2.13.1-5.fc37.i686.rpm        4.8 MB/s |  46 kB     00:00    
(63/153): keyutils-libs-1.6.1-5.fc37.i686.rpm   3.3 MB/s |  32 kB     00:00    
(64/153): libblkid-2.38.1-3.fc38.i686.rpm        19 MB/s | 116 kB     00:00    
(65/153): libarchive-3.6.1-3.fc38.i686.rpm       44 MB/s | 443 kB     00:00    
(66/153): krb5-libs-1.20.1-3.fc38.i686.rpm       53 MB/s | 763 kB     00:00    
(67/153): libcap-2.48-5.fc37.i686.rpm            14 MB/s |  68 kB     00:00    
(68/153): libbrotli-1.0.9-9.fc37.i686.rpm        37 MB/s | 317 kB     00:00    
(69/153): libcap-ng-0.8.3-4.fc38.i686.rpm       8.5 MB/s |  33 kB     00:00    
(70/153): libcom_err-1.46.5-3.fc37.i686.rpm     7.1 MB/s |  26 kB     00:00    
(71/153): libcurl-7.87.0-1.fc38.i686.rpm         37 MB/s | 327 kB     00:00    
(72/153): libeconf-0.4.0-4.fc37.i686.rpm        3.6 MB/s |  29 kB     00:00    
(73/153): libevent-2.1.12-7.fc37.i686.rpm        37 MB/s | 279 kB     00:00    
(74/153): libdb-5.3.28-54.fc38.i686.rpm          43 MB/s | 827 kB     00:00    
(75/153): libfdisk-2.38.1-3.fc38.i686.rpm        18 MB/s | 173 kB     00:00    
(76/153): libidn2-2.3.4-1.fc38.i686.rpm          28 MB/s | 154 kB     00:00    
(77/153): libmount-2.38.1-3.fc38.i686.rpm        25 MB/s | 141 kB     00:00    
(78/153): libffi-3.4.4-1.fc38.i686.rpm          3.9 MB/s |  36 kB     00:00    
(79/153): libnghttp2-1.51.0-1.fc38.i686.rpm      19 MB/s |  80 kB     00:00    
(80/153): libnsl2-2.0.0-4.fc37.i686.rpm         7.0 MB/s |  31 kB     00:00    
(81/153): libpkgconf-1.8.0-3.fc37.i686.rpm      6.6 MB/s |  38 kB     00:00    
(82/153): libpsl-0.21.1-6.fc37.i686.rpm          15 MB/s |  64 kB     00:00    
(83/153): libselinux-3.4-6.fc38.i686.rpm         16 MB/s |  91 kB     00:00    
(84/153): libpwquality-1.4.4-11.fc37.i686.rpm    12 MB/s | 106 kB     00:00    
(85/153): libsemanage-3.4-6.fc38.i686.rpm        14 MB/s | 128 kB     00:00    
(86/153): libsigsegv-2.14-3.fc37.i686.rpm       6.4 MB/s |  27 kB     00:00    
(87/153): libsepol-3.4-4.fc38.i686.rpm           41 MB/s | 336 kB     00:00    
(88/153): libssh-config-0.10.4-2.fc38.noarch.rp 2.5 MB/s | 8.8 kB     00:00    
(89/153): libssh-0.10.4-2.fc38.i686.rpm          16 MB/s | 222 kB     00:00    
(90/153): libsmartcols-2.38.1-3.fc38.i686.rpm   4.2 MB/s |  65 kB     00:00    
(91/153): libtasn1-4.19.0-1.fc38.i686.rpm       7.9 MB/s |  76 kB     00:00    
(92/153): libtirpc-1.3.3-0.fc37.i686.rpm         17 MB/s | 101 kB     00:00    
(93/153): libutempter-1.2.1-7.fc37.i686.rpm     4.6 MB/s |  26 kB     00:00    
(94/153): libuuid-2.38.1-3.fc38.i686.rpm        7.1 MB/s |  28 kB     00:00    
(95/153): libunistring-1.0-2.fc37.i686.rpm       33 MB/s | 551 kB     00:00    
(96/153): libverto-0.3.2-4.fc37.i686.rpm        2.2 MB/s |  21 kB     00:00    
(97/153): libxcrypt-4.4.33-5.fc38.i686.rpm       14 MB/s | 123 kB     00:00    
(98/153): lua-libs-5.4.4-6.fc38.i686.rpm         26 MB/s | 148 kB     00:00    
(99/153): libzstd-1.5.2-3.fc37.i686.rpm          32 MB/s | 274 kB     00:00    
(100/153): libxml2-2.10.3-2.fc38.i686.rpm        60 MB/s | 745 kB     00:00    
(101/153): lua-srpm-macros-1-7.fc37.noarch.rpm  1.5 MB/s | 8.8 kB     00:00    
(102/153): lz4-libs-1.9.3-5.fc37.i686.rpm        15 MB/s |  72 kB     00:00    
(103/153): ncurses-base-6.3-5.20221126.fc38.noa  15 MB/s |  61 kB     00:00    
(104/153): mpfr-4.1.1-2.fc38.i686.rpm            46 MB/s | 637 kB     00:00    
(105/153): ncurses-libs-6.3-5.20221126.fc38.i68  33 MB/s | 348 kB     00:00    
(106/153): nettle-3.8-2.fc37.i686.rpm            46 MB/s | 430 kB     00:00    
(107/153): nim-srpm-macros-3-7.fc37.noarch.rpm  1.6 MB/s | 8.4 kB     00:00    
(108/153): ocaml-srpm-macros-7-2.fc37.noarch.rp 2.3 MB/s |  13 kB     00:00    
(109/153): openblas-srpm-macros-2-12.fc37.noarc 1.5 MB/s | 7.5 kB     00:00    
(110/153): p11-kit-0.24.1-5.fc38.i686.rpm        40 MB/s | 335 kB     00:00    
(111/153): openldap-2.6.3-1.fc38.i686.rpm        23 MB/s | 273 kB     00:00    
(112/153): p11-kit-trust-0.24.1-5.fc38.i686.rpm  25 MB/s | 135 kB     00:00    
(113/153): package-notes-srpm-macros-0.5-6.fc38 1.8 MB/s |  11 kB     00:00    
(114/153): pam-libs-1.5.2-15.fc38.i686.rpm      7.3 MB/s |  60 kB     00:00    
(115/153): pam-1.5.2-15.fc38.i686.rpm            34 MB/s | 535 kB     00:00    
(116/153): openssl-libs-3.0.5-6.fc38.i686.rpm    61 MB/s | 2.1 MB     00:00    
(117/153): patch-2.7.6-17.fc37.i686.rpm          18 MB/s | 137 kB     00:00    
(118/153): pcre2-10.40-1.fc37.1.i686.rpm         40 MB/s | 234 kB     00:00    
(119/153): pcre2-syntax-10.40-1.fc37.1.noarch.r  28 MB/s | 142 kB     00:00    
(120/153): perl-srpm-macros-1-47.fc38.noarch.rp 1.5 MB/s | 8.2 kB     00:00    
(121/153): pkgconf-1.8.0-3.fc37.i686.rpm        7.8 MB/s |  42 kB     00:00    
(122/153): pkgconf-m4-1.8.0-3.fc37.noarch.rpm   3.1 MB/s |  14 kB     00:00    
(123/153): pkgconf-pkg-config-1.8.0-3.fc37.i686 2.5 MB/s |  10 kB     00:00    
(124/153): popt-1.19-1.fc38.i686.rpm             16 MB/s |  61 kB     00:00    
(125/153): publicsuffix-list-dafsa-20221208-1.f  12 MB/s |  59 kB     00:00    
(126/153): python-srpm-macros-3.11-6.fc38.noarc 4.2 MB/s |  25 kB     00:00    
(127/153): qt5-srpm-macros-5.15.7-1.fc38.noarch 1.5 MB/s | 7.9 kB     00:00    
(128/153): readline-8.2-2.fc38.i686.rpm          33 MB/s | 218 kB     00:00    
(129/153): redhat-rpm-config-235-1.fc38.noarch.  11 MB/s |  74 kB     00:00    
(130/153): rpm-4.18.0-8.fc38.i686.rpm            55 MB/s | 543 kB     00:00    
(131/153): rpm-build-libs-4.18.0-8.fc38.i686.rp  22 MB/s | 102 kB     00:00    
(132/153): rpm-build-4.18.0-8.fc38.i686.rpm     9.6 MB/s |  69 kB     00:00    
(133/153): rpm-libs-4.18.0-8.fc38.i686.rpm       41 MB/s | 341 kB     00:00    
(134/153): rpmautospec-rpm-macros-0.3.1-1.fc38. 1.3 MB/s | 8.8 kB     00:00    
(135/153): rpm-sequoia-1.2.0-1.fc38.i686.rpm     64 MB/s | 924 kB     00:00    
(136/153): rust-srpm-macros-23-1.fc38.noarch.rp 1.1 MB/s | 9.4 kB     00:00    
(137/153): sed-4.8-11.fc37.i686.rpm              37 MB/s | 300 kB     00:00    
(138/153): setup-2.14.3-1.fc38.noarch.rpm        26 MB/s | 146 kB     00:00    
(139/153): shadow-utils-4.13-3.fc38.i686.rpm     64 MB/s | 1.2 MB     00:00    
(140/153): sqlite-libs-3.40.0-1.fc38.i686.rpm    35 MB/s | 705 kB     00:00    
(141/153): systemd-libs-252.4-598.fc38.i686.rpm  42 MB/s | 662 kB     00:00    
(142/153): unzip-6.0-58.fc38.i686.rpm            23 MB/s | 177 kB     00:00    
(143/153): tzdata-2022g-1.fc38.noarch.rpm        37 MB/s | 432 kB     00:00    
(144/153): tar-1.34-5.fc38.i686.rpm              51 MB/s | 892 kB     00:00    
(145/153): which-2.21-36.fc38.i686.rpm          6.2 MB/s |  42 kB     00:00    
(146/153): util-linux-core-2.38.1-3.fc38.i686.r  33 MB/s | 467 kB     00:00    
(147/153): xxhash-libs-0.8.1-3.fc37.i686.rpm    8.6 MB/s |  59 kB     00:00    
(148/153): xz-5.2.9-1.fc38.i686.rpm              26 MB/s | 300 kB     00:00    
(149/153): xz-libs-5.2.9-1.fc38.i686.rpm         16 MB/s | 101 kB     00:00    
(150/153): util-linux-2.38.1-3.fc38.i686.rpm     68 MB/s | 2.3 MB     00:00    
(151/153): zlib-1.2.13-1.fc38.i686.rpm           16 MB/s |  92 kB     00:00    
(152/153): zip-3.0-35.fc38.i686.rpm              26 MB/s | 263 kB     00:00    
(153/153): zstd-1.5.2-3.fc37.i686.rpm            36 MB/s | 418 kB     00:00    
--------------------------------------------------------------------------------
Total                                            45 MB/s |  53 MB     00:01     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-2.fc37.i686                            1/1 
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warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.14.3-1.fc38.noarch                          26/153 
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  Installing       : elfutils-libelf-0.188-3.fc38.i686                   40/153 
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  Installing       : libstdc++-13.0.0-0.4.fc38.i686                      42/153 
  Installing       : libuuid-2.38.1-3.fc38.i686                          43/153 
  Installing       : libzstd-1.5.2-3.fc37.i686                           44/153 
  Installing       : popt-1.19-1.fc38.i686                               45/153 
  Installing       : libblkid-2.38.1-3.fc38.i686                         46/153 
  Installing       : readline-8.2-2.fc38.i686                            47/153 
  Installing       : libattr-2.5.1-5.fc38.i686                           48/153 
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  Installing       : mpfr-4.1.1-2.fc38.i686                              54/153 
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  Installing       : unzip-6.0-58.fc38.i686                              56/153 
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  Installing       : sqlite-libs-3.40.0-1.fc38.i686                      59/153 
  Installing       : alternatives-1.21-1.fc38.i686                       60/153 
  Installing       : libcap-ng-0.8.3-4.fc38.i686                         61/153 
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  Installing       : libcom_err-1.46.5-3.fc37.i686                       63/153 
  Installing       : libeconf-0.4.0-4.fc37.i686                          64/153 
  Installing       : pam-libs-1.5.2-15.fc38.i686                         65/153 
  Installing       : libsepol-3.4-4.fc38.i686                            66/153 
  Installing       : libsmartcols-2.38.1-3.fc38.i686                     67/153 
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  Installing       : libselinux-3.4-6.fc38.i686                          73/153 
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  Installing       : cyrus-sasl-lib-2.1.28-8.fc38.i686                   99/153 
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  Verifying        : libblkid-2.38.1-3.fc38.i686                         66/153 
  Verifying        : libbrotli-1.0.9-9.fc37.i686                         67/153 
  Verifying        : libcap-2.48-5.fc37.i686                             68/153 
  Verifying        : libcap-ng-0.8.3-4.fc38.i686                         69/153 
  Verifying        : libcom_err-1.46.5-3.fc37.i686                       70/153 
  Verifying        : libcurl-7.87.0-1.fc38.i686                          71/153 
  Verifying        : libdb-5.3.28-54.fc38.i686                           72/153 
  Verifying        : libeconf-0.4.0-4.fc37.i686                          73/153 
  Verifying        : libevent-2.1.12-7.fc37.i686                         74/153 
  Verifying        : libfdisk-2.38.1-3.fc38.i686                         75/153 
  Verifying        : libffi-3.4.4-1.fc38.i686                            76/153 
  Verifying        : libidn2-2.3.4-1.fc38.i686                           77/153 
  Verifying        : libmount-2.38.1-3.fc38.i686                         78/153 
  Verifying        : libnghttp2-1.51.0-1.fc38.i686                       79/153 
  Verifying        : libnsl2-2.0.0-4.fc37.i686                           80/153 
  Verifying        : libpkgconf-1.8.0-3.fc37.i686                        81/153 
  Verifying        : libpsl-0.21.1-6.fc37.i686                           82/153 
  Verifying        : libpwquality-1.4.4-11.fc37.i686                     83/153 
  Verifying        : libselinux-3.4-6.fc38.i686                          84/153 
  Verifying        : libsemanage-3.4-6.fc38.i686                         85/153 
  Verifying        : libsepol-3.4-4.fc38.i686                            86/153 
  Verifying        : libsigsegv-2.14-3.fc37.i686                         87/153 
  Verifying        : libsmartcols-2.38.1-3.fc38.i686                     88/153 
  Verifying        : libssh-0.10.4-2.fc38.i686                           89/153 
  Verifying        : libssh-config-0.10.4-2.fc38.noarch                  90/153 
  Verifying        : libtasn1-4.19.0-1.fc38.i686                         91/153 
  Verifying        : libtirpc-1.3.3-0.fc37.i686                          92/153 
  Verifying        : libunistring-1.0-2.fc37.i686                        93/153 
  Verifying        : libutempter-1.2.1-7.fc37.i686                       94/153 
  Verifying        : libuuid-2.38.1-3.fc38.i686                          95/153 
  Verifying        : libverto-0.3.2-4.fc37.i686                          96/153 
  Verifying        : libxcrypt-4.4.33-5.fc38.i686                        97/153 
  Verifying        : libxml2-2.10.3-2.fc38.i686                          98/153 
  Verifying        : libzstd-1.5.2-3.fc37.i686                           99/153 
  Verifying        : lua-libs-5.4.4-6.fc38.i686                         100/153 
  Verifying        : lua-srpm-macros-1-7.fc37.noarch                    101/153 
  Verifying        : lz4-libs-1.9.3-5.fc37.i686                         102/153 
  Verifying        : mpfr-4.1.1-2.fc38.i686                             103/153 
  Verifying        : ncurses-base-6.3-5.20221126.fc38.noarch            104/153 
  Verifying        : ncurses-libs-6.3-5.20221126.fc38.i686              105/153 
  Verifying        : nettle-3.8-2.fc37.i686                             106/153 
  Verifying        : nim-srpm-macros-3-7.fc37.noarch                    107/153 
  Verifying        : ocaml-srpm-macros-7-2.fc37.noarch                  108/153 
  Verifying        : openblas-srpm-macros-2-12.fc37.noarch              109/153 
  Verifying        : openldap-2.6.3-1.fc38.i686                         110/153 
  Verifying        : openssl-libs-1:3.0.5-6.fc38.i686                   111/153 
  Verifying        : p11-kit-0.24.1-5.fc38.i686                         112/153 
  Verifying        : p11-kit-trust-0.24.1-5.fc38.i686                   113/153 
  Verifying        : package-notes-srpm-macros-0.5-6.fc38.noarch        114/153 
  Verifying        : pam-1.5.2-15.fc38.i686                             115/153 
  Verifying        : pam-libs-1.5.2-15.fc38.i686                        116/153 
  Verifying        : patch-2.7.6-17.fc37.i686                           117/153 
  Verifying        : pcre2-10.40-1.fc37.1.i686                          118/153 
  Verifying        : pcre2-syntax-10.40-1.fc37.1.noarch                 119/153 
  Verifying        : perl-srpm-macros-1-47.fc38.noarch                  120/153 
  Verifying        : pkgconf-1.8.0-3.fc37.i686                          121/153 
  Verifying        : pkgconf-m4-1.8.0-3.fc37.noarch                     122/153 
  Verifying        : pkgconf-pkg-config-1.8.0-3.fc37.i686               123/153 
  Verifying        : popt-1.19-1.fc38.i686                              124/153 
  Verifying        : publicsuffix-list-dafsa-20221208-1.fc38.noarch     125/153 
  Verifying        : python-srpm-macros-3.11-6.fc38.noarch              126/153 
  Verifying        : qt5-srpm-macros-5.15.7-1.fc38.noarch               127/153 
  Verifying        : readline-8.2-2.fc38.i686                           128/153 
  Verifying        : redhat-rpm-config-235-1.fc38.noarch                129/153 
  Verifying        : rpm-4.18.0-8.fc38.i686                             130/153 
  Verifying        : rpm-build-4.18.0-8.fc38.i686                       131/153 
  Verifying        : rpm-build-libs-4.18.0-8.fc38.i686                  132/153 
  Verifying        : rpm-libs-4.18.0-8.fc38.i686                        133/153 
  Verifying        : rpm-sequoia-1.2.0-1.fc38.i686                      134/153 
  Verifying        : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch         135/153 
  Verifying        : rust-srpm-macros-23-1.fc38.noarch                  136/153 
  Verifying        : sed-4.8-11.fc37.i686                               137/153 
  Verifying        : setup-2.14.3-1.fc38.noarch                         138/153 
  Verifying        : shadow-utils-2:4.13-3.fc38.i686                    139/153 
  Verifying        : sqlite-libs-3.40.0-1.fc38.i686                     140/153 
  Verifying        : systemd-libs-252.4-598.fc38.i686                   141/153 
  Verifying        : tar-2:1.34-5.fc38.i686                             142/153 
  Verifying        : tzdata-2022g-1.fc38.noarch                         143/153 
  Verifying        : unzip-6.0-58.fc38.i686                             144/153 
  Verifying        : util-linux-2.38.1-3.fc38.i686                      145/153 
  Verifying        : util-linux-core-2.38.1-3.fc38.i686                 146/153 
  Verifying        : which-2.21-36.fc38.i686                            147/153 
  Verifying        : xxhash-libs-0.8.1-3.fc37.i686                      148/153 
  Verifying        : xz-5.2.9-1.fc38.i686                               149/153 
  Verifying        : xz-libs-5.2.9-1.fc38.i686                          150/153 
  Verifying        : zip-3.0-35.fc38.i686                               151/153 
  Verifying        : zlib-1.2.13-1.fc38.i686                            152/153 
  Verifying        : zstd-1.5.2-3.fc37.i686                             153/153 

Installed:
  alternatives-1.21-1.fc38.i686                                                 
  ansible-srpm-macros-1-8.1.fc38.noarch                                         
  audit-libs-3.0.9-2.fc38.i686                                                  
  authselect-1.4.2-1.fc38.i686                                                  
  authselect-libs-1.4.2-1.fc38.i686                                             
  basesystem-11-14.fc37.noarch                                                  
  bash-5.2.9-3.fc38.i686                                                        
  binutils-2.39-6.fc38.i686                                                     
  binutils-gold-2.39-6.fc38.i686                                                
  bzip2-1.0.8-12.fc37.i686                                                      
  bzip2-libs-1.0.8-12.fc37.i686                                                 
  ca-certificates-2022.2.54-5.fc37.noarch                                       
  coreutils-9.1-8.fc38.i686                                                     
  coreutils-common-9.1-8.fc38.i686                                              
  cpio-2.13-13.fc38.i686                                                        
  cracklib-2.9.7-30.fc38.i686                                                   
  crypto-policies-20221215-1.gita4c31a3.fc38.noarch                             
  curl-7.87.0-1.fc38.i686                                                       
  cyrus-sasl-lib-2.1.28-8.fc38.i686                                             
  debugedit-5.0-5.fc37.i686                                                     
  diffutils-3.8-3.fc37.i686                                                     
  dwz-0.15-1.fc38.i686                                                          
  ed-1.18-2.fc37.i686                                                           
  efi-srpm-macros-5-6.fc37.noarch                                               
  elfutils-0.188-3.fc38.i686                                                    
  elfutils-debuginfod-client-0.188-3.fc38.i686                                  
  elfutils-default-yama-scope-0.188-3.fc38.noarch                               
  elfutils-libelf-0.188-3.fc38.i686                                             
  elfutils-libs-0.188-3.fc38.i686                                               
  fedora-gpg-keys-38-0.3.noarch                                                 
  fedora-release-38-0.6.noarch                                                  
  fedora-release-common-38-0.6.noarch                                           
  fedora-release-identity-basic-38-0.6.noarch                                   
  fedora-repos-38-0.3.noarch                                                    
  fedora-repos-rawhide-38-0.3.noarch                                            
  file-5.42-4.fc37.i686                                                         
  file-libs-5.42-4.fc37.i686                                                    
  filesystem-3.18-2.fc37.i686                                                   
  findutils-1:4.9.0-2.fc37.i686                                                 
  fonts-srpm-macros-1:2.0.5-10.fc38.noarch                                      
  fpc-srpm-macros-1.3-6.fc37.noarch                                             
  gawk-5.1.1-4.fc37.i686                                                        
  gdb-minimal-12.1-10.fc38.i686                                                 
  gdbm-libs-1:1.23-2.fc37.i686                                                  
  ghc-srpm-macros-1.5.0-7.fc37.noarch                                           
  glibc-2.36.9000-19.fc38.i686                                                  
  glibc-common-2.36.9000-19.fc38.i686                                           
  glibc-gconv-extra-2.36.9000-19.fc38.i686                                      
  glibc-minimal-langpack-2.36.9000-19.fc38.i686                                 
  gmp-1:6.2.1-3.fc37.i686                                                       
  gnat-srpm-macros-4-16.fc37.noarch                                             
  go-srpm-macros-3.2.0-1.fc38.noarch                                            
  grep-3.8-1.fc38.i686                                                          
  gzip-1.12-2.fc37.i686                                                         
  info-7.0.1-1.fc38.i686                                                        
  jansson-2.13.1-5.fc37.i686                                                    
  kernel-srpm-macros-1.0-15.fc37.noarch                                         
  keyutils-libs-1.6.1-5.fc37.i686                                               
  krb5-libs-1.20.1-3.fc38.i686                                                  
  libacl-2.3.1-4.fc38.i686                                                      
  libarchive-3.6.1-3.fc38.i686                                                  
  libattr-2.5.1-5.fc38.i686                                                     
  libblkid-2.38.1-3.fc38.i686                                                   
  libbrotli-1.0.9-9.fc37.i686                                                   
  libcap-2.48-5.fc37.i686                                                       
  libcap-ng-0.8.3-4.fc38.i686                                                   
  libcom_err-1.46.5-3.fc37.i686                                                 
  libcurl-7.87.0-1.fc38.i686                                                    
  libdb-5.3.28-54.fc38.i686                                                     
  libeconf-0.4.0-4.fc37.i686                                                    
  libevent-2.1.12-7.fc37.i686                                                   
  libfdisk-2.38.1-3.fc38.i686                                                   
  libffi-3.4.4-1.fc38.i686                                                      
  libgcc-13.0.0-0.4.fc38.i686                                                   
  libgomp-13.0.0-0.4.fc38.i686                                                  
  libidn2-2.3.4-1.fc38.i686                                                     
  libmount-2.38.1-3.fc38.i686                                                   
  libnghttp2-1.51.0-1.fc38.i686                                                 
  libnsl2-2.0.0-4.fc37.i686                                                     
  libpkgconf-1.8.0-3.fc37.i686                                                  
  libpsl-0.21.1-6.fc37.i686                                                     
  libpwquality-1.4.4-11.fc37.i686                                               
  libselinux-3.4-6.fc38.i686                                                    
  libsemanage-3.4-6.fc38.i686                                                   
  libsepol-3.4-4.fc38.i686                                                      
  libsigsegv-2.14-3.fc37.i686                                                   
  libsmartcols-2.38.1-3.fc38.i686                                               
  libssh-0.10.4-2.fc38.i686                                                     
  libssh-config-0.10.4-2.fc38.noarch                                            
  libstdc++-13.0.0-0.4.fc38.i686                                                
  libtasn1-4.19.0-1.fc38.i686                                                   
  libtirpc-1.3.3-0.fc37.i686                                                    
  libunistring-1.0-2.fc37.i686                                                  
  libutempter-1.2.1-7.fc37.i686                                                 
  libuuid-2.38.1-3.fc38.i686                                                    
  libverto-0.3.2-4.fc37.i686                                                    
  libxcrypt-4.4.33-5.fc38.i686                                                  
  libxml2-2.10.3-2.fc38.i686                                                    
  libzstd-1.5.2-3.fc37.i686                                                     
  lua-libs-5.4.4-6.fc38.i686                                                    
  lua-srpm-macros-1-7.fc37.noarch                                               
  lz4-libs-1.9.3-5.fc37.i686                                                    
  mpfr-4.1.1-2.fc38.i686                                                        
  ncurses-base-6.3-5.20221126.fc38.noarch                                       
  ncurses-libs-6.3-5.20221126.fc38.i686                                         
  nettle-3.8-2.fc37.i686                                                        
  nim-srpm-macros-3-7.fc37.noarch                                               
  ocaml-srpm-macros-7-2.fc37.noarch                                             
  openblas-srpm-macros-2-12.fc37.noarch                                         
  openldap-2.6.3-1.fc38.i686                                                    
  openssl-libs-1:3.0.5-6.fc38.i686                                              
  p11-kit-0.24.1-5.fc38.i686                                                    
  p11-kit-trust-0.24.1-5.fc38.i686                                              
  package-notes-srpm-macros-0.5-6.fc38.noarch                                   
  pam-1.5.2-15.fc38.i686                                                        
  pam-libs-1.5.2-15.fc38.i686                                                   
  patch-2.7.6-17.fc37.i686                                                      
  pcre2-10.40-1.fc37.1.i686                                                     
  pcre2-syntax-10.40-1.fc37.1.noarch                                            
  perl-srpm-macros-1-47.fc38.noarch                                             
  pkgconf-1.8.0-3.fc37.i686                                                     
  pkgconf-m4-1.8.0-3.fc37.noarch                                                
  pkgconf-pkg-config-1.8.0-3.fc37.i686                                          
  popt-1.19-1.fc38.i686                                                         
  publicsuffix-list-dafsa-20221208-1.fc38.noarch                                
  python-srpm-macros-3.11-6.fc38.noarch                                         
  qt5-srpm-macros-5.15.7-1.fc38.noarch                                          
  readline-8.2-2.fc38.i686                                                      
  redhat-rpm-config-235-1.fc38.noarch                                           
  rpm-4.18.0-8.fc38.i686                                                        
  rpm-build-4.18.0-8.fc38.i686                                                  
  rpm-build-libs-4.18.0-8.fc38.i686                                             
  rpm-libs-4.18.0-8.fc38.i686                                                   
  rpm-sequoia-1.2.0-1.fc38.i686                                                 
  rpmautospec-rpm-macros-0.3.1-1.fc38.noarch                                    
  rust-srpm-macros-23-1.fc38.noarch                                             
  sed-4.8-11.fc37.i686                                                          
  setup-2.14.3-1.fc38.noarch                                                    
  shadow-utils-2:4.13-3.fc38.i686                                               
  sqlite-libs-3.40.0-1.fc38.i686                                                
  systemd-libs-252.4-598.fc38.i686                                              
  tar-2:1.34-5.fc38.i686                                                        
  tzdata-2022g-1.fc38.noarch                                                    
  unzip-6.0-58.fc38.i686                                                        
  util-linux-2.38.1-3.fc38.i686                                                 
  util-linux-core-2.38.1-3.fc38.i686                                            
  which-2.21-36.fc38.i686                                                       
  xxhash-libs-0.8.1-3.fc37.i686                                                 
  xz-5.2.9-1.fc38.i686                                                          
  xz-libs-5.2.9-1.fc38.i686                                                     
  zip-3.0-35.fc38.i686                                                          
  zlib-1.2.13-1.fc38.i686                                                       
  zstd-1.5.2-3.fc37.i686                                                        

Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: gdb-minimal-12.1-10.fc38.i686
libpkgconf-1.8.0-3.fc37.i686
curl-7.87.0-1.fc38.i686
fedora-release-38-0.6.noarch
fedora-repos-rawhide-38-0.3.noarch
file-libs-5.42-4.fc37.i686
go-srpm-macros-3.2.0-1.fc38.noarch
unzip-6.0-58.fc38.i686
rpm-build-libs-4.18.0-8.fc38.i686
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
popt-1.19-1.fc38.i686
util-linux-2.38.1-3.fc38.i686
zlib-1.2.13-1.fc38.i686
libnghttp2-1.51.0-1.fc38.i686
info-7.0.1-1.fc38.i686
ghc-srpm-macros-1.5.0-7.fc37.noarch
perl-srpm-macros-1-47.fc38.noarch
libfdisk-2.38.1-3.fc38.i686
cpio-2.13-13.fc38.i686
ncurses-libs-6.3-5.20221126.fc38.i686
file-5.42-4.fc37.i686
gnat-srpm-macros-4-16.fc37.noarch
ca-certificates-2022.2.54-5.fc37.noarch
bash-5.2.9-3.fc38.i686
gzip-1.12-2.fc37.i686
pkgconf-1.8.0-3.fc37.i686
libarchive-3.6.1-3.fc38.i686
libeconf-0.4.0-4.fc37.i686
lua-srpm-macros-1-7.fc37.noarch
ncurses-base-6.3-5.20221126.fc38.noarch
patch-2.7.6-17.fc37.i686
libidn2-2.3.4-1.fc38.i686
package-notes-srpm-macros-0.5-6.fc38.noarch
authselect-libs-1.4.2-1.fc38.i686
cracklib-2.9.7-30.fc38.i686
libsemanage-3.4-6.fc38.i686
ansible-srpm-macros-1-8.1.fc38.noarch
openssl-libs-3.0.5-6.fc38.i686
libuuid-2.38.1-3.fc38.i686
pcre2-10.40-1.fc37.1.i686
sed-4.8-11.fc37.i686
rpm-sequoia-1.2.0-1.fc38.i686
filesystem-3.18-2.fc37.i686
libutempter-1.2.1-7.fc37.i686
fonts-srpm-macros-2.0.5-10.fc38.noarch
binutils-gold-2.39-6.fc38.i686
libblkid-2.38.1-3.fc38.i686
libcap-ng-0.8.3-4.fc38.i686
pam-1.5.2-15.fc38.i686
glibc-common-2.36.9000-19.fc38.i686
glibc-gconv-extra-2.36.9000-19.fc38.i686
libsigsegv-2.14-3.fc37.i686
elfutils-0.188-3.fc38.i686
sqlite-libs-3.40.0-1.fc38.i686
redhat-rpm-config-235-1.fc38.noarch
binutils-2.39-6.fc38.i686
elfutils-libs-0.188-3.fc38.i686
libgomp-13.0.0-0.4.fc38.i686
bzip2-libs-1.0.8-12.fc37.i686
krb5-libs-1.20.1-3.fc38.i686
elfutils-libelf-0.188-3.fc38.i686
ocaml-srpm-macros-7-2.fc37.noarch
libmount-2.38.1-3.fc38.i686
coreutils-common-9.1-8.fc38.i686
diffutils-3.8-3.fc37.i686
libxcrypt-4.4.33-5.fc38.i686
kernel-srpm-macros-1.0-15.fc37.noarch
libdb-5.3.28-54.fc38.i686
libbrotli-1.0.9-9.fc37.i686
fedora-release-common-38-0.6.noarch
xz-libs-5.2.9-1.fc38.i686
rpm-build-4.18.0-8.fc38.i686
fedora-gpg-keys-38-0.3.noarch
zip-3.0-35.fc38.i686
libpsl-0.21.1-6.fc37.i686
fedora-release-identity-basic-38-0.6.noarch
libattr-2.5.1-5.fc38.i686
libcap-2.48-5.fc37.i686
xxhash-libs-0.8.1-3.fc37.i686
tzdata-2022g-1.fc38.noarch
p11-kit-trust-0.24.1-5.fc38.i686
jansson-2.13.1-5.fc37.i686
rpm-libs-4.18.0-8.fc38.i686
libtasn1-4.19.0-1.fc38.i686
libcurl-7.87.0-1.fc38.i686
pkgconf-m4-1.8.0-3.fc37.noarch
rust-srpm-macros-23-1.fc38.noarch
libsepol-3.4-4.fc38.i686
fpc-srpm-macros-1.3-6.fc37.noarch
libselinux-3.4-6.fc38.i686
glibc-minimal-langpack-2.36.9000-19.fc38.i686
util-linux-core-2.38.1-3.fc38.i686
coreutils-9.1-8.fc38.i686
libtirpc-1.3.3-0.fc37.i686
bzip2-1.0.8-12.fc37.i686
nim-srpm-macros-3-7.fc37.noarch
mpfr-4.1.1-2.fc38.i686
libstdc++-13.0.0-0.4.fc38.i686
libsmartcols-2.38.1-3.fc38.i686
libverto-0.3.2-4.fc37.i686
lz4-libs-1.9.3-5.fc37.i686
shadow-utils-4.13-3.fc38.i686
libssh-0.10.4-2.fc38.i686
basesystem-11-14.fc37.noarch
gdbm-libs-1.23-2.fc37.i686
libxml2-2.10.3-2.fc38.i686
which-2.21-36.fc38.i686
p11-kit-0.24.1-5.fc38.i686
libunistring-1.0-2.fc37.i686
efi-srpm-macros-5-6.fc37.noarch
openblas-srpm-macros-2-12.fc37.noarch
authselect-1.4.2-1.fc38.i686
setup-2.14.3-1.fc38.noarch
gmp-6.2.1-3.fc37.i686
fedora-repos-38-0.3.noarch
alternatives-1.21-1.fc38.i686
keyutils-libs-1.6.1-5.fc37.i686
python-srpm-macros-3.11-6.fc38.noarch
findutils-4.9.0-2.fc37.i686
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
libgcc-13.0.0-0.4.fc38.i686
libffi-3.4.4-1.fc38.i686
cyrus-sasl-lib-2.1.28-8.fc38.i686
systemd-libs-252.4-598.fc38.i686
xz-5.2.9-1.fc38.i686
zstd-1.5.2-3.fc37.i686
audit-libs-3.0.9-2.fc38.i686
readline-8.2-2.fc38.i686
openldap-2.6.3-1.fc38.i686
dwz-0.15-1.fc38.i686
pam-libs-1.5.2-15.fc38.i686
nettle-3.8-2.fc37.i686
libacl-2.3.1-4.fc38.i686
publicsuffix-list-dafsa-20221208-1.fc38.noarch
lua-libs-5.4.4-6.fc38.i686
pkgconf-pkg-config-1.8.0-3.fc37.i686
debugedit-5.0-5.fc37.i686
libssh-config-0.10.4-2.fc38.noarch
gawk-5.1.1-4.fc37.i686
tar-1.34-5.fc38.i686
pcre2-syntax-10.40-1.fc37.1.noarch
rpm-4.18.0-8.fc38.i686
libpwquality-1.4.4-11.fc37.i686
qt5-srpm-macros-5.15.7-1.fc38.noarch
libcom_err-1.46.5-3.fc37.i686
libnsl2-2.0.0-4.fc37.i686
elfutils-default-yama-scope-0.188-3.fc38.noarch
elfutils-debuginfod-client-0.188-3.fc38.i686
grep-3.8-1.fc38.i686
libevent-2.1.12-7.fc37.i686
libzstd-1.5.2-3.fc37.i686
glibc-2.36.9000-19.fc38.i686
ed-1.18-2.fc37.i686
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1658275200
Wrote: /builddir/build/SRPMS/autodocksuite-4.2.6-17.fc38.src.rpm
Finish: rpmbuild -bs
cp: ‘var/lib/mock/fedora-rawhide-i686-1671789623.523985/root/var/log’: No such file or directory
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1671789623.523985/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-i686-1671789623.523985/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-i686-1671789623.523985/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-qy8hfwpw/autodocksuite/autodocksuite.spec) Config(child) 1 minutes 6 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=115200): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/autodocksuite-4.2.6-17.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1671789623.523985 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/autodocksuite-4.2.6-17.fc38.src.rpm)  Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1671789623.523985/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1671789623.523985/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1671789623.523985/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  71 kB/s | 3.0 kB     00:00    
Additional repo https_jakub_fedorapeople_org_fe  11 kB/s | 3.0 kB     00:00    
local                                            16 kB/s | 3.8 kB     00:00    
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for autodocksuite-4.2.6-17.fc38.src.rpm
Start: build setup for autodocksuite-4.2.6-17.fc38.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1658275200
Wrote: /builddir/build/SRPMS/autodocksuite-4.2.6-17.fc38.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  13 kB/s | 3.0 kB     00:00    
Additional repo https_jakub_fedorapeople_org_fe 5.8 kB/s | 3.0 kB     00:00    
local                                            15 kB/s | 3.8 kB     00:00    
Dependencies resolved.
=====================================================================================================
 Package              Arch    Version           Repository                                       Size
=====================================================================================================
Installing:
 gcc-c++              i686    13.0.0-0.4.fc38   https_jakub_fedorapeople_org_fedora_gcc13_arch   13 M
 make                 i686    1:4.3-11.fc37     local                                           540 k
 tcsh                 i686    6.24.01-2.fc37    local                                           460 k
Installing dependencies:
 annobin-docs         noarch  10.99-1.0.1.fc38  https_jakub_fedorapeople_org_fedora_gcc13_arch   93 k
 annobin-plugin-gcc   i686    10.99-1.0.1.fc38  https_jakub_fedorapeople_org_fedora_gcc13_arch  889 k
 cpp                  i686    13.0.0-0.4.fc38   https_jakub_fedorapeople_org_fedora_gcc13_arch   11 M
 gc                   i686    8.2.2-1.fc38      local                                           112 k
 gcc                  i686    13.0.0-0.4.fc38   https_jakub_fedorapeople_org_fedora_gcc13_arch   34 M
 gcc-plugin-annobin   i686    13.0.0-0.4.fc38   https_jakub_fedorapeople_org_fedora_gcc13_arch   30 k
 glibc-devel          i686    2.36.9000-19.fc38 local                                            43 k
 glibc-headers-x86    noarch  2.36.9000-19.fc38 local                                           450 k
 guile22              i686    2.2.7-6.fc37      local                                           6.5 M
 kernel-headers       i686    6.1.0-1.fc38      local                                           1.4 M
 libasan              i686    13.0.0-0.4.fc38   https_jakub_fedorapeople_org_fedora_gcc13_arch  491 k
 libatomic            i686    13.0.0-0.4.fc38   https_jakub_fedorapeople_org_fedora_gcc13_arch   17 k
 libmpc               i686    1.2.1-5.fc37      local                                            65 k
 libstdc++-devel      i686    13.0.0-0.4.fc38   https_jakub_fedorapeople_org_fedora_gcc13_arch  2.4 M
 libtool-ltdl         i686    2.4.7-3.0.1.fc38  https_jakub_fedorapeople_org_fedora_gcc13_arch   39 k
 libubsan             i686    13.0.0-0.4.fc38   https_jakub_fedorapeople_org_fedora_gcc13_arch  219 k
 libxcrypt-devel      i686    4.4.33-5.fc38     local                                            30 k

Transaction Summary
=====================================================================================================
Install  20 Packages

Total download size: 72 M
Installed size: 225 M
Downloading Packages:
(1/20): annobin-docs-10.99-1.0.1.fc38.noarch.rp 199 kB/s |  93 kB     00:00    
(2/20): annobin-plugin-gcc-10.99-1.0.1.fc38.i68 1.7 MB/s | 889 kB     00:00    
(3/20): gcc-c++-13.0.0-0.4.fc38.i686.rpm        103 MB/s |  13 MB     00:00    
(4/20): cpp-13.0.0-0.4.fc38.i686.rpm             16 MB/s |  11 MB     00:00    
(5/20): gcc-plugin-annobin-13.0.0-0.4.fc38.i686 1.0 MB/s |  30 kB     00:00    
(6/20): libatomic-13.0.0-0.4.fc38.i686.rpm      835 kB/s |  17 kB     00:00    
(7/20): libstdc++-devel-13.0.0-0.4.fc38.i686.rp  72 MB/s | 2.4 MB     00:00    
(8/20): libasan-13.0.0-0.4.fc38.i686.rpm        7.3 MB/s | 491 kB     00:00    
(9/20): libtool-ltdl-2.4.7-3.0.1.fc38.i686.rpm  1.9 MB/s |  39 kB     00:00    
(10/20): libubsan-13.0.0-0.4.fc38.i686.rpm      9.4 MB/s | 219 kB     00:00    
(11/20): gc-8.2.2-1.fc38.i686.rpm               3.6 MB/s | 112 kB     00:00    
(12/20): glibc-devel-2.36.9000-19.fc38.i686.rpm 2.0 MB/s |  43 kB     00:00    
(13/20): glibc-headers-x86-2.36.9000-19.fc38.no  18 MB/s | 450 kB     00:00    
(14/20): kernel-headers-6.1.0-1.fc38.i686.rpm    24 MB/s | 1.4 MB     00:00    
(15/20): libmpc-1.2.1-5.fc37.i686.rpm            10 MB/s |  65 kB     00:00    
(16/20): libxcrypt-devel-4.4.33-5.fc38.i686.rpm 4.4 MB/s |  30 kB     00:00    
(17/20): make-4.3-11.fc37.i686.rpm               37 MB/s | 540 kB     00:00    
(18/20): guile22-2.2.7-6.fc37.i686.rpm           54 MB/s | 6.5 MB     00:00    
(19/20): gcc-13.0.0-0.4.fc38.i686.rpm            71 MB/s |  34 MB     00:00    
(20/20): tcsh-6.24.01-2.fc37.i686.rpm           9.3 MB/s | 460 kB     00:00    
--------------------------------------------------------------------------------
Total                                            76 MB/s |  72 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : kernel-headers-6.1.0-1.fc38.i686                      1/20 
  Installing       : glibc-headers-x86-2.36.9000-19.fc38.noarch            2/20 
  Installing       : libxcrypt-devel-4.4.33-5.fc38.i686                    3/20 
  Installing       : glibc-devel-2.36.9000-19.fc38.i686                    4/20 
  Installing       : libstdc++-devel-13.0.0-0.4.fc38.i686                  5/20 
  Installing       : annobin-docs-10.99-1.0.1.fc38.noarch                  6/20 
  Installing       : libmpc-1.2.1-5.fc37.i686                              7/20 
  Installing       : cpp-13.0.0-0.4.fc38.i686                              8/20 
  Installing       : gc-8.2.2-1.fc38.i686                                  9/20 
  Installing       : libubsan-13.0.0-0.4.fc38.i686                        10/20 
  Installing       : libtool-ltdl-2.4.7-3.0.1.fc38.i686                   11/20 
  Installing       : guile22-2.2.7-6.fc37.i686                            12/20 
  Installing       : make-1:4.3-11.fc37.i686                              13/20 
  Installing       : libatomic-13.0.0-0.4.fc38.i686                       14/20 
  Installing       : libasan-13.0.0-0.4.fc38.i686                         15/20 
  Installing       : gcc-13.0.0-0.4.fc38.i686                             16/20 
  Running scriptlet: gcc-13.0.0-0.4.fc38.i686                             16/20 
  Installing       : annobin-plugin-gcc-10.99-1.0.1.fc38.i686             17/20 
  Running scriptlet: annobin-plugin-gcc-10.99-1.0.1.fc38.i686             17/20 
  Installing       : gcc-c++-13.0.0-0.4.fc38.i686                         18/20 
  Installing       : gcc-plugin-annobin-13.0.0-0.4.fc38.i686              19/20 
  Installing       : tcsh-6.24.01-2.fc37.i686                             20/20 
  Running scriptlet: tcsh-6.24.01-2.fc37.i686                             20/20 
  Verifying        : annobin-docs-10.99-1.0.1.fc38.noarch                  1/20 
  Verifying        : annobin-plugin-gcc-10.99-1.0.1.fc38.i686              2/20 
  Verifying        : cpp-13.0.0-0.4.fc38.i686                              3/20 
  Verifying        : gcc-13.0.0-0.4.fc38.i686                              4/20 
  Verifying        : gcc-c++-13.0.0-0.4.fc38.i686                          5/20 
  Verifying        : gcc-plugin-annobin-13.0.0-0.4.fc38.i686               6/20 
  Verifying        : libasan-13.0.0-0.4.fc38.i686                          7/20 
  Verifying        : libatomic-13.0.0-0.4.fc38.i686                        8/20 
  Verifying        : libstdc++-devel-13.0.0-0.4.fc38.i686                  9/20 
  Verifying        : libtool-ltdl-2.4.7-3.0.1.fc38.i686                   10/20 
  Verifying        : libubsan-13.0.0-0.4.fc38.i686                        11/20 
  Verifying        : gc-8.2.2-1.fc38.i686                                 12/20 
  Verifying        : glibc-devel-2.36.9000-19.fc38.i686                   13/20 
  Verifying        : glibc-headers-x86-2.36.9000-19.fc38.noarch           14/20 
  Verifying        : guile22-2.2.7-6.fc37.i686                            15/20 
  Verifying        : kernel-headers-6.1.0-1.fc38.i686                     16/20 
  Verifying        : libmpc-1.2.1-5.fc37.i686                             17/20 
  Verifying        : libxcrypt-devel-4.4.33-5.fc38.i686                   18/20 
  Verifying        : make-1:4.3-11.fc37.i686                              19/20 
  Verifying        : tcsh-6.24.01-2.fc37.i686                             20/20 

Installed:
  annobin-docs-10.99-1.0.1.fc38.noarch                                          
  annobin-plugin-gcc-10.99-1.0.1.fc38.i686                                      
  cpp-13.0.0-0.4.fc38.i686                                                      
  gc-8.2.2-1.fc38.i686                                                          
  gcc-13.0.0-0.4.fc38.i686                                                      
  gcc-c++-13.0.0-0.4.fc38.i686                                                  
  gcc-plugin-annobin-13.0.0-0.4.fc38.i686                                       
  glibc-devel-2.36.9000-19.fc38.i686                                            
  glibc-headers-x86-2.36.9000-19.fc38.noarch                                    
  guile22-2.2.7-6.fc37.i686                                                     
  kernel-headers-6.1.0-1.fc38.i686                                              
  libasan-13.0.0-0.4.fc38.i686                                                  
  libatomic-13.0.0-0.4.fc38.i686                                                
  libmpc-1.2.1-5.fc37.i686                                                      
  libstdc++-devel-13.0.0-0.4.fc38.i686                                          
  libtool-ltdl-2.4.7-3.0.1.fc38.i686                                            
  libubsan-13.0.0-0.4.fc38.i686                                                 
  libxcrypt-devel-4.4.33-5.fc38.i686                                            
  make-1:4.3-11.fc37.i686                                                       
  tcsh-6.24.01-2.fc37.i686                                                      

Complete!
Finish: build setup for autodocksuite-4.2.6-17.fc38.src.rpm
Start: rpmbuild autodocksuite-4.2.6-17.fc38.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1658275200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.0HYMXy
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf src
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/autodocksuite-4.2.6-src.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd src
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.9uuEOs
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
~/build/BUILD/src/autodock ~/build/BUILD/src
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd src
+ pushd autodock
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2014-07-19 01:58:48.000000000 +0000
+++ ./configure	2022-12-23 10:01:49.185176504 +0000
@@ -1874,7 +1874,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config.sub
++ basename ./config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config.guess
++ basename ./config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
+ ./configure --build=i686-redhat-linux-gnu --host=i686-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for gawk... (cached) gawk
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... none
checking for i686-redhat-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking build system type... i686-redhat-linux-gnu
checking host system type... i686-redhat-linux-gnu
checking for i686-redhat-linux-gnu-gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... none
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for gethostname... yes
checking for getpid... yes
checking for GetProcessId... no
checking for fchmod... yes
checking for setlinebuf... yes
checking for sysconf... yes
checking for times... yes
checking for getrusage... yes
checking for pow... no
checking for sqrt... no
checking for strncasecmp... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking dependency style of g++... (cached) none
checking for g++ option to support OpenMP... -fopenmp
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
+ make -j2
rm -f default_parameters.h
csh ./paramdat2h.csh ./AD4_parameters.dat ./AD4.1_bound.dat > default_parameters.h
egrep: warning: egrep is obsolescent; using grep -E
egrep: warning: egrep is obsolescent; using grep -E
make  all-am
make[1]: Entering directory '/builddir/build/BUILD/src/autodock'
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-main.o `test -f 'main.cc' || echo './'`main.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-alea.o `test -f 'alea.cc' || echo './'`alea.cc
main.cc:3490: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 3490 | #pragma omp parallel for \
      | 
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-analysis.o `test -f 'analysis.cc' || echo './'`analysis.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from hybrids.h:40,
                 from main.cc:98:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
main.cc: In function 'int main(int, const char**)':
main.cc:480:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  480 | register int i = 0;
      |              ^
main.cc:481:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  481 | register int j = 0;
      |              ^
main.cc:482:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  482 | register int k = 0;
      |              ^
main.cc:484:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  484 | register int xyz = 0;
      |              ^~~
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from analysis.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
analysis.cc: In function 'void analysis(int, int*, GroupEnergy*, int, const char (*)[128], const Real*, const Real*, const Real*, Boole, const Real&, const Real (*)[3], const EnergyTables*, MapType*, const Real*, int, int, const NonbondParam*, int, int, State*, const char*, const Real*, Boole, Boole, const int (*)[2048], const int*, const Real (*)[3], const char*, const Real&, Boole, int, const int*, Boole, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Boole, Unbound_Model, Boole, int, int, FILE*)':
analysis.cc:138:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  138 |     register int   i = 0;
      |                    ^
analysis.cc:139:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  139 |     register int   j = 0;
      |                    ^
analysis.cc:140:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  140 |     register int   k = 0;
      |                    ^
analysis.cc:141:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  141 |     register int   t = 0;
      |                    ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-atom_parameter_manager.o `test -f 'atom_parameter_manager.cc' || echo './'`atom_parameter_manager.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-banner.o `test -f 'banner.cc' || echo './'`banner.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-bestpdb.o `test -f 'bestpdb.cc' || echo './'`bestpdb.cc
bestpdb.cc: In function 'void bestpdb(int, const int*, const int (*)[2000], const Real*, const Real (*)[2048][3], const char (*)[128], int, Boole, const Real*, int, FILE*)':
bestpdb.cc:58:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   58 |     register int  i=0,
      |                   ^
bestpdb.cc:59:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   59 |                   j=0,
      |                   ^
bestpdb.cc:60:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   60 |                   k=0,
      |                   ^
bestpdb.cc:61:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   61 |                   confnum=0;
      |                   ^~~~~~~
bestpdb.cc:123:62: warning: '%4d' directive writing between 4 and 10 bytes into a region of size 9 [-Wformat-overflow=]
  123 |                     sprintf(AtmNamResNamNumInsCode, "%-11.11s%4d%-4.4s", &atomstuff[j][11],
      |                                                              ^~~
bestpdb.cc:123:53: note: directive argument in the range [1, 1073741823]
  123 |                     sprintf(AtmNamResNamNumInsCode, "%-11.11s%4d%-4.4s", &atomstuff[j][11],
      |                                                     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:906,
                 from bestpdb.cc:33:
In function 'sprintf',
    inlined from 'bestpdb(int, int const*, int const (*) [2000], double const*, double const (*) [2048][3], char const (*) [128], int, int, double const*, int, _IO_FILE*)' at bestpdb.cc:123:28:
/usr/include/bits/stdio2.h:30:34: note: '__sprintf_chk' output between 20 and 26 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-calculateEnergies.o `test -f 'calculateEnergies.cc' || echo './'`calculateEnergies.cc
main.cc:1250:89: warning: '%s' directive writing up to 4095 bytes into a region of size 313 [-Wformat-overflow=]
 1250 |                     prStr( error_message,"%s:         Edit the parameter library file \"%s\" and try again.\n", programname, FN_parameter_library );
      |                                                                                         ^~                                   ~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:906,
                 from /usr/include/c++/13/cstdio:42,
                 from /usr/include/c++/13/ext/string_conversions.h:45,
                 from /usr/include/c++/13/bits/basic_string.h:4072,
                 from /usr/include/c++/13/string:54,
                 from main.cc:71:
In function 'sprintf',
    inlined from 'main' at main.cc:1250:26:
/usr/include/bits/stdio2.h:30:34: note: '__sprintf_chk' output 61 or more bytes (assuming 4156) into a destination of size 356
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-call_glss.o `test -f 'call_glss.cc' || echo './'`call_glss.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from call_glss.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
call_glss.cc: In function 'State call_glss(Global_Search*, Local_Search*, const State&, unsigned int, unsigned int, int, FILE*, const Output_pop_stats&, Molecule*, Eval*, Boole, Boole, Boole, const GridMapSetInfo*, const char*, int*)':
call_glss.cc:259:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  259 |     register unsigned int i;
      |                           ^
call_glss.cc:260:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  260 |     register int j;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-call_ls.o `test -f 'call_ls.cc' || echo './'`call_ls.cc
In file included from eval.h:38,
                 from support.h:237,
                 from ls.h:40,
                 from call_ls.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
call_ls.cc: In function 'Representation** cnv_state_to_rep(const State&)':
call_ls.cc:50:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   50 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-center_ligand.o `test -f 'center_ligand.cc' || echo './'`center_ligand.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-changeState.o `test -f 'changeState.cc' || echo './'`changeState.cc
In file included from changeState.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
changeState.cc: In function 'State changeState(const State&, const Real&, const Real&, int, const Real (*)[8][2], const int*)':
changeState.cc:46:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   46 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-check_header_float.o `test -f 'check_header_float.cc' || echo './'`check_header_float.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-check_header_int.o `test -f 'check_header_int.cc' || echo './'`check_header_int.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-check_header_line.o `test -f 'check_header_line.cc' || echo './'`check_header_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-cluster_analysis.o `test -f 'cluster_analysis.cc' || echo './'`cluster_analysis.cc
cluster_analysis.cc: In function 'int cluster_analysis(const Real&, int (*)[2000], int*, const int*, int, int, const int*, const Real (*)[2048][3], const Real (*)[3], const Real*, Real (*)[2000], Boole, Boole, Real (*)[3], int, Real*, Boole, int)':
cluster_analysis.cc:61:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   61 |     register int compare = 0,
      |                  ^~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-clmode.o `test -f 'clmode.cc' || echo './'`clmode.cc
cluster_analysis.cc:62:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   62 |                  i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-cnv_state_to_coords.o `test -f 'cnv_state_to_coords.cc' || echo './'`cnv_state_to_coords.cc
In file included from clmode.h:40,
                 from clmode.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
clmode.cc: In function 'void clmode(int, const Real&, const char*, const clock_t&, const tms&, Boole, const char*, const Real (*)[3], const Real*, Boole, Boole, const char*, Boole, int, int, FILE*)':
clmode.cc:62:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   62 |     register int xyz = 0;
      |                  ^~~
clmode.cc:89:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   89 |     register int i = 0;
      |                  ^
clmode.cc:90:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   90 |     register int j = 0;
      |                  ^
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from cnv_state_to_coords.cc:37:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
clmode.cc:210:28: warning: 'strncpy' output may be truncated copying 30 bytes from a string of length 255 [-Wstringop-truncation]
  210 |                     strncpy( atomstuff[atomCounter], line, (size_t)30 );
      |                            ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-com.o `test -f 'com.cc' || echo './'`com.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-conformation_sampler.o `test -f 'conformation_sampler.cc' || echo './'`conformation_sampler.cc
com.cc:238: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
  238 | #pragma omp critical
      | 
In file included from eval.h:38,
                 from support.h:237,
                 from conformation_sampler.h:29,
                 from conformation_sampler.cc:27:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
conformation_sampler.cc: In constructor 'ConformationSampler::ConformationSampler(const State&, int, Eval*, int, FILE*)':
conformation_sampler.cc:99:10: warning: variable 'base_q' set but not used [-Wunused-but-set-variable]
   99 |     Quat base_q = probe_point.readQuat();
      |          ^~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-dimLibrary.o `test -f 'dimLibrary.cc' || echo './'`dimLibrary.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from pso.h:4,
                 from dimLibrary.cc:6:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
dimLibrary.cc: In function 'void copyDimension(State*, const Position&)':
dimLibrary.cc:17:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   17 |         register int i, j;
      |                      ^
dimLibrary.cc:17:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   17 |         register int i, j;
      |                         ^
dimLibrary.cc: In function 'void copyState2Dimension(Position*, const State&)':
dimLibrary.cc:34:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   34 |         register int i, j;
      |                      ^
dimLibrary.cc:34:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   34 |         register int i, j;
      |                         ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-distdepdiel.o `test -f 'distdepdiel.cc' || echo './'`distdepdiel.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-stateLibrary.o `test -f 'stateLibrary.cc' || echo './'`stateLibrary.cc
In file included from stateLibrary.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
stateLibrary.cc: In function 'void initialiseState(State*)':
stateLibrary.cc:40:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   40 |     register int i;
      |                  ^
stateLibrary.cc: In function 'void copyState(State*, const State&)':
stateLibrary.cc:61:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   61 |     register int i;
      |                  ^
stateLibrary.cc: In function 'void printState(FILE*, State, int)':
stateLibrary.cc:90:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   90 |     register int i;
      |                  ^
stateLibrary.cc: In function 'int checkState(FILE*, const State*)':
stateLibrary.cc:199:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  199 |     register int i;
      |                  ^
stateLibrary.cc: In function 'Molecule copyStateToMolecule(const State*, Molecule*)':
stateLibrary.cc:251:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  251 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-readfield.o `test -f 'readfield.cc' || echo './'`readfield.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-readmap.o `test -f 'readmap.cc' || echo './'`readmap.cc
readfield.cc: In function 'void readfield(GridMapSetInfo*, char*, const clock_t&, const tms&, int, FILE*)':
readfield.cc:49:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   49 |     register int i = 0;
      |                  ^
readfield.cc:83:17: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
   83 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:108:17: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  108 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:116:17: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  116 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:123:17: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  123 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-readPDBQT.o `test -f 'readPDBQT.cc' || echo './'`readPDBQT.cc
readmap.cc: In function 'Statistics readmap(char*, int, const clock_t&, const tms&, Boole, Boole*, int, const GridMapSetInfo*, MapType*, char, FILE*)':
readmap.cc:82:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   82 |     register int xyz = 0;
      |                  ^~~
readmap.cc:83:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   83 |     register int i = 0;
      |                  ^
readmap.cc:84:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   84 |     register int j = 0;
      |                  ^
readmap.cc:85:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   85 |     register int k = 0;
      |                  ^
readPDBQT.cc: In function 'Molecule readPDBQT(char*, int, int*, Real (*)[3], Real*, Boole*, int*, int*, char (*)[5], char*, char*, Boole, char (*)[128], int*, int*, Boole*, int*, int*, Real*, Real*, int*, int*, int (*)[2048], Real (*)[3], int*, int*, NonbondParam*, const clock_t&, const tms&, const char*, int*, int*, int, char (*)[256], int*, int, int, FILE*)':
readPDBQT.cc:138:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  138 |         register int    i = 0;
      |                         ^
readPDBQT.cc:139:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  139 |         register int    j = 0;
      |                         ^
readPDBQT.cc:133:25: warning: variable 'B_has_conect_records' set but not used [-Wunused-but-set-variable]
  133 |         Boole           B_has_conect_records = FALSE;
      |                         ^~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-read_parameter_library.o `test -f 'read_parameter_library.cc' || echo './'`read_parameter_library.cc
readPDBQT.cc:370:308: warning: ' could not be found;
	check ...' directive writing 238 bytes into a region of size between 195 and 212 [-Wformat-overflow=]
  370 |                     prStr(message, "%s: WARNING: the atom type (%s) of atom number %d could not be found;\n\tcheck that this atom type is listed after the \"ligand_types\" keyword in the DPF,\n\tand make sure to add a \"map\" keyword to the DPF for this atom type.\n\tNote that AutoDock will use the default atom type = 1, instead.\n\n", programname, this_parameter_entry.autogrid_type, natom+1);
      |                                                                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:906,
                 from readPDBQT.cc:33:
In function 'sprintf',
    inlined from 'readPDBQT(char*, int, int*, double (*) [3], double*, int*, int*, int*, char (*) [5], char*, char*, int, char (*) [128], int*, int*, int*, int*, int*, double*, double*, int*, int*, int (*) [2048], double (*) [3], int*, int*, nonbond_param*, long const&, tms const&, char const*, int*, int*, int, char (*) [256], int*, int, int, _IO_FILE*)' at readPDBQT.cc:370:26:
/usr/include/bits/stdio2.h:30:34: note: '__sprintf_chk' output 283 or more bytes (assuming 300) into a destination of size 256
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
read_parameter_library.cc: In function 'void setup_parameter_library(FILE*, int, const char*, Unbound_Model, Linear_FE_Model*)':
read_parameter_library.cc:207:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  207 |     register int counter = 0;
      |                  ^~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-eval.o `test -f 'eval.cc' || echo './'`eval.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-gencau.o `test -f 'gencau.cc' || echo './'`gencau.cc
In file included from eval.h:38,
                 from eval.cc:39:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
eval.cc: In function 'void make_state_from_rep(const Representation* const*, State*, int, FILE*)':
eval.cc:72:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   72 |    register int i;
      |                 ^
eval.cc: In member function 'double Eval::eval(int)':
eval.cc:135:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  135 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-getrms.o `test -f 'getrms.cc' || echo './'`getrms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-get_atom_type.o `test -f 'get_atom_type.cc' || echo './'`get_atom_type.cc
getrms.cc: In function 'Real getrms(const Real (*)[3], const Real (*)[3], Boole, Boole, int, const int*, Boole, int)':
getrms.cc:48:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                  ^
getrms.cc:48:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                     ^
getrms.cc:48:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                        ^~~
get_atom_type.cc: In function 'int get_atom_type(const char*)':
get_atom_type.cc:53:9: warning: variable 'bond_index' set but not used [-Wunused-but-set-variable]
   53 |     int bond_index = -1;
      |         ^~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-getInitialState.o `test -f 'getInitialState.cc' || echo './'`getInitialState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-getpdbcrds.o `test -f 'getpdbcrds.cc' || echo './'`getpdbcrds.cc
In file included from getInitialState.h:31,
                 from getInitialState.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
getInitialState.cc: In function 'void getInitialState(Real*, const Real&, State*, State*, State*, Boole, Boole, Boole, const Real*, const Real*, const Real*, Real (*)[3], const Real (*)[3], const char (*)[128], EnergyComponent*, const EnergyTables*, Boole, MapType*, int, int, int*, GroupEnergy*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], int, int, const Real&, int, const int*, Boole, const Real&, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Unbound_Model, int, FILE*)':
getInitialState.cc:111:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  111 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-gs.o `test -f 'gs.cc' || echo './'`gs.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-initautodock.o `test -f 'initautodock.cc' || echo './'`initautodock.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from gs.cc:42:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
gs.cc: In function 'double worst_in_window(const double*, int, int, FILE*)':
gs.cc:73:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   73 |    register int i;
      |                 ^
gs.cc: In function 'double avg_in_window(const double*, int, FILE*)':
gs.cc:107:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  107 |    register int i;
      |                 ^
gs.cc: In member function 'double Genetic_Algorithm::worst_this_generation(const Population&, int, FILE*)':
gs.cc:130:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  130 |    register unsigned int i;
      |                          ^
gs.cc: In member function 'void Genetic_Algorithm::make_table(int, const Real&, int, FILE*)':
gs.cc:287:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  287 |    register int i, j;
      |                 ^
gs.cc:287:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  287 |    register int i, j;
      |                    ^
gs.cc: In member function 'void Genetic_Algorithm::initialize(unsigned int, unsigned int, int, FILE*)':
gs.cc:396:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  396 |    register unsigned int i;
      |                          ^
gs.cc: In member function 'void Genetic_Algorithm::crossover(Population&, int, FILE*)':
gs.cc:596:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  596 |    register unsigned int i;
      |                          ^
In file included from constants.h:28,
                 from structs.h:30,
                 from rep.h:45,
                 from support.h:236:
autocomm.h:166:60: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); }
      |                                                            ^~~~~~~~~
gs.cc:641:10: note: in expansion of macro 'assertQuatOK'
  641 |          assertQuatOK( q_father );
      |          ^~~~~~~~~~~~
autocomm.h:166:60: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); }
      |                                                            ^~~~~~~~~
gs.cc:652:10: note: in expansion of macro 'assertQuatOK'
  652 |          assertQuatOK( q_mother );
      |          ^~~~~~~~~~~~
gs.cc: In member function 'void Genetic_Algorithm::crossover_arithmetic(Genotype&, Genotype&, const Real&, int, FILE*)':
gs.cc:877:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  877 |    register unsigned int i;
      |                          ^
gs.cc: In member function 'void Genetic_Algorithm::selection_proportional(Population&, Individual*, int, FILE*)':
gs.cc:983:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  983 |    register unsigned int i=0, start_index = 0;
      |                          ^
gs.cc:983:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  983 |    register unsigned int i=0, start_index = 0;
      |                               ^~~~~~~~~~~
gs.cc: In member function 'void Genetic_Algorithm::selection_tournament(Population&, Individual*, int, FILE*)':
gs.cc:1262:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 1262 |    register unsigned int i = 0, start_index = 0;
      |                          ^
gs.cc:1262:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 1262 |    register unsigned int i = 0, start_index = 0;
      |                                 ^~~~~~~~~~~
gs.cc: In member function 'void Genetic_Algorithm::selection_linear_ranking(Population&, Individual*, int, FILE*)':
gs.cc:1327:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 1327 |    register unsigned int i = 0, start_index = 0;
      |                          ^
gs.cc:1327:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 1327 |    register unsigned int i = 0, start_index = 0;
      |                                 ^~~~~~~~~~~
gs.cc: In member function 'virtual int Genetic_Algorithm::search(Population&, Eval*, int, FILE*)':
gs.cc:1420:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 1420 |    register unsigned int i;
      |                          ^
In file included from initautodock.h:31,
                 from initautodock.cc:36:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
initautodock.cc: In function 'void initautodock(const char (*)[128], Real (*)[3], const Real (*)[3], int, int, State*, const int (*)[2048], const Real (*)[3], int, int, const GridMapSetInfo*)':
initautodock.cc:76:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   76 |     register int   xyz = 0;
      |                    ^~~
initautodock.cc:77:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   77 |     register int   i = 0;
      |                    ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-input_state.o `test -f 'input_state.cc' || echo './'`input_state.cc
In file included from input_state.h:30,
                 from input_state.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
input_state.cc: In function 'int input_state(State*, FILE*, const char*, int, int*, Real*, Real*, char*)':
input_state.cc:70:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
   70 |             (void) fgets(myline, LINELEN, fp);
      |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-investigate.o `test -f 'investigate.cc' || echo './'`investigate.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-linpack.o `test -f 'linpack.cc' || echo './'`linpack.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from investigate.h:33,
                 from investigate.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
investigate.cc: In function 'void investigate(int, int*, GroupEnergy*, const Real*, const Real*, const Real*, Boole, Real (*)[3], const Real (*)[3], const EnergyTables*, int, MapType*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], Boole, const short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, Real (*)[8][2], int*, Boole, Boole, const char*, int, int, const Real&, const Real&, const int*, Boole, const Real&, const Real&, const Real&, GridMapSetInfo*, Boole, Boole, Boole, int, int, int, FILE*)':
investigate.cc:103:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  103 |     register int Test = -1;
      |                  ^~~~
investigate.cc:106:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  106 |     register int i = 0;
      |                  ^
investigate.cc:120:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  120 |     register int NumOutside = 0;
      |                  ^~~~~~~~~~
investigate.cc:121:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  121 |     register int LocalTest = 0;
      |                  ^~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-ls.o `test -f 'ls.cc' || echo './'`ls.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-mapping.o `test -f 'mapping.cc' || echo './'`mapping.cc
In file included from eval.h:38,
                 from support.h:237,
                 from ls.h:40,
                 from ls.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
ls.cc: In function 'Phenotype genPh(const Phenotype&, const Real&, const Real*, Real*, int, FILE*)':
ls.cc:46:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   46 |    register unsigned int i, index = 0;
      |                          ^
ls.cc:46:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   46 |    register unsigned int i, index = 0;
      |                             ^~~~~
ls.cc: In member function 'virtual Boole Solis_Wets::SW(Phenotype&, int, FILE*)':
ls.cc:88:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                          ^
ls.cc:88:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                             ^
ls.cc:88:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                                ^~~~~~~~~~~~~
ls.cc:88:51: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                                                   ^~~~~~~~~~~~
ls.cc:89:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   89 |    register Real temp_rho = rho;
      |                  ^~~~~~~~
ls.cc:92:9: warning: unused variable 'thisQuat' [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |         ^~~~~~~~
ls.cc:92:19: warning: unused variable 'prevQuat' [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |                   ^~~~~~~~
ls.cc:92:29: warning: unused variable 'startQuat' [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |                             ^~~~~~~~~
ls.cc: In member function 'virtual Boole Pseudo_Solis_Wets::SW(Phenotype&, int, FILE*)':
ls.cc:248:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                          ^
ls.cc:248:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                             ^
ls.cc:248:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                ^~~~~~~~~~~~~
ls.cc:248:51: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                                   ^~~~~~~~~~~~
ls.cc:248:70: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from eval.h:38,
                 from support.h:237,
                 from mapping.cc:37:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-mingw_getrusage.o `test -f 'mingw_getrusage.cc' || echo './'`mingw_getrusage.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-minmeanmax.o `test -f 'minmeanmax.cc' || echo './'`minmeanmax.cc
In file included from eval.h:38,
                 from support.h:237,
                 from minmeanmax.cc:39:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
minmeanmax.cc: In function 'void minmeanmax(FILE*, const Population&, int, const GridMapSetInfo*)':
minmeanmax.cc:51:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                 ^
minmeanmax.cc:51:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                      ^
minmeanmax.cc:51:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                           ^
minmeanmax.cc:56:76: warning: variable 'best' set but not used [-Wunused-but-set-variable]
   56 |    double minimum[ 7+MAX_TORS ], sum[ 7+MAX_TORS ], maximum[ 7+MAX_TORS ], best[ 7+MAX_TORS ];
      |                                                                            ^~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-mkNewState.o `test -f 'mkNewState.cc' || echo './'`mkNewState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-mkTorTree.o `test -f 'mkTorTree.cc' || echo './'`mkTorTree.cc
In file included from mkNewState.h:31,
                 from mkNewState.cc:33:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
mkNewState.cc: In function 'void mkNewState(State*, const State*, State*, const Real (*)[3], const int (*)[2048], int, Real (*)[3], const Real (*)[3], int, const Real&, const Real&, const Real&, const Real (*)[8][2], const int*, int, int, FILE*)':
mkNewState.cc:56:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   56 |     register int i;
      |                  ^
mkTorTree.cc: In function 'void mkTorTree(const int*, const int (*)[2048], const char (*)[256], int, int (*)[2048], int*, int*, const char*, const char (*)[5], Boole*, int*, int*, Real*, Real*, int*, int*, int, int, FILE*)':
mkTorTree.cc:88:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   88 |     register int   i = 0;
      |                    ^
mkTorTree.cc:89:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   89 |     register int   j = 0;
      |                    ^
mkTorTree.cc:90:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   90 |     register int   k = 0;
      |                    ^
mkTorTree.cc: At global scope:
mkTorTree.cc:456:5: warning: 'int check_atomnumber(int, const int*, int, int, FILE*)' defined but not used [-Wunused-function]
  456 | int check_atomnumber( const int number, const int *atomnumber, const int nrecord,
      |     ^~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-mkRandomState.o `test -f 'mkRandomState.cc' || echo './'`mkRandomState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-nonbonds.o `test -f 'nonbonds.cc' || echo './'`nonbonds.cc
mkRandomState.cc: In function 'State mkRandomState(int, Real (*)[8][2], int*, GridMapSetInfo*)':
mkRandomState.cc:44:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   44 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-openfile.o `test -f 'openfile.cc' || echo './'`openfile.cc
In file included from nonbonds.cc:35:
mdist.h: In function 'void mdist()':
mdist.h:45:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   45 |         register int i,j;
      |                      ^
mdist.h:45:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   45 |         register int i,j;
      |                        ^
mdist.h:32:25: warning: operation on 'mindist[0][0]' may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:89:5: note: in expansion of macro 'set_minmax'
   89 |     set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on 'maxdist[0][0]' may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:89:5: note: in expansion of macro 'set_minmax'
   89 |     set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on 'mindist[1][1]' may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:96:5: note: in expansion of macro 'set_minmax'
   96 |     set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on 'maxdist[1][1]' may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:96:5: note: in expansion of macro 'set_minmax'
   96 |     set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on 'mindist[2][2]' may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:102:5: note: in expansion of macro 'set_minmax'
  102 |     set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on 'maxdist[2][2]' may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:102:5: note: in expansion of macro 'set_minmax'
  102 |     set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on 'mindist[3][3]' may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:107:5: note: in expansion of macro 'set_minmax'
  107 |     set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming.
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on 'maxdist[3][3]' may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:107:5: note: in expansion of macro 'set_minmax'
  107 |     set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming.
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on 'mindist[4][4]' may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:111:5: note: in expansion of macro 'set_minmax'
  111 |     set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on 'maxdist[4][4]' may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:111:5: note: in expansion of macro 'set_minmax'
  111 |     set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on 'mindist[5][5]' may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:114:5: note: in expansion of macro 'set_minmax'
  114 |     set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on 'maxdist[5][5]' may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:114:5: note: in expansion of macro 'set_minmax'
  114 |     set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on 'mindist[6][6]' may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:116:5: note: in expansion of macro 'set_minmax'
  116 |     set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on 'maxdist[6][6]' may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:116:5: note: in expansion of macro 'set_minmax'
  116 |     set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515
      |     ^~~~~~~~~~
nonbonds.cc: In function 'void printbonds(int, const int*, const int (*)[16], const char*, int, int, FILE*)':
nonbonds.cc:250:13: warning: '?:' using integer constants in boolean context [-Wint-in-bool-context]
  248 |         for (int j=0; j<
      |                       ~~
  249 |             B_print_all_bonds
      |             ~~~~~~~~~~~~~~~~~
  250 |             ? MAX_NBONDS // loop over all the slots for this atom's "j" bonds
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  251 |             : nbonds[i]; // loop over this atom's "j" bonds
      |             ~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-output_state.o `test -f 'output_state.cc' || echo './'`output_state.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-parse_dpf_line.o `test -f 'parse_dpf_line.cc' || echo './'`parse_dpf_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-parse_param_line.o `test -f 'parse_param_line.cc' || echo './'`parse_param_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-parse_PDBQT_line.o `test -f 'parse_PDBQT_line.cc' || echo './'`parse_PDBQT_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-parse_trj_line.o `test -f 'parse_trj_line.cc' || echo './'`parse_trj_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-parsetypes.o `test -f 'parsetypes.cc' || echo './'`parsetypes.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-print_2x.o `test -f 'print_2x.cc' || echo './'`print_2x.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-print_atomic_energies.o `test -f 'print_atomic_energies.cc' || echo './'`print_atomic_energies.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-print_avsfld.o `test -f 'print_avsfld.cc' || echo './'`print_avsfld.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-writePDBQT.o `test -f 'writePDBQT.cc' || echo './'`writePDBQT.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-print_rem.o `test -f 'print_rem.cc' || echo './'`print_rem.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-printdate.o `test -f 'printdate.cc' || echo './'`printdate.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from writePDBQT.h:34,
                 from writePDBQT.cc:35:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-printEnergies.o `test -f 'printEnergies.cc' || echo './'`printEnergies.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-printhms.o `test -f 'printhms.cc' || echo './'`printhms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-prClusterHist.o `test -f 'prClusterHist.cc' || echo './'`prClusterHist.cc
prClusterHist.cc: In function 'void prClusterHist(int, int, const Real&, const int*, const int (*)[2000], const Real*, const Real (*)[2000], const Real*, int, FILE*)':
prClusterHist.cc:51:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   51 |     register int  Rank=0,
      |                   ^~~~
prClusterHist.cc:52:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   52 |                   j=0;
      |                   ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-prInitialState.o `test -f 'prInitialState.cc' || echo './'`prInitialState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-prTorConList.o `test -f 'prTorConList.cc' || echo './'`prTorConList.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from writePDBQT.h:34,
                 from prInitialState.cc:36:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
prInitialState.cc: In function 'void prInitialState(const EnergyBreakdown*, int, int, const Real (*)[3], const char (*)[128], const int*, EnergyComponent*, const Real*, int, Boole, Unbound_Model, int, FILE*)':
prInitialState.cc:59:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   59 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-pso.o `test -f 'pso.cc' || echo './'`pso.cc
prTorConList.cc: In function 'void prTorConList(int, const Boole*, const short unsigned int (*)[256], Real (*)[8][2], int*, int, FILE*)':
prTorConList.cc:64:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   64 |     register int i = 0;
      |                  ^
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from pso.h:4,
                 from pso.cc:1:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-qmultiply.o `test -f 'qmultiply.cc' || echo './'`qmultiply.cc
In file included from qmultiply.cc:35:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
qmultiply.cc:42:44: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   42 |                 register const Quat *const ql,   //left
      |                                            ^~
qmultiply.cc:43:44: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   43 |                 register const Quat *const qr )  //right
      |                                            ^~
qmultiply.cc: In function 'void qmultiply(Quat*, const Quat*, const Quat*)':
qmultiply.cc:66:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                     ^
qmultiply.cc:66:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                       ^
qmultiply.cc:66:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                         ^
qmultiply.cc:66:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                           ^
qmultiply.cc: In function 'AxisAngle QuatToAxisAngle(const Quat&)':
qmultiply.cc:224:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  224 |         register double angle = 2. * acos( input.w );
      |                         ^~~~~
qmultiply.cc: In function 'Quat inverse(const Quat&)':
qmultiply.cc:356:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  356 |     register Quat conj, inv;
      |                   ^~~~
qmultiply.cc:356:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  356 |     register Quat conj, inv;
      |                         ^~~
qmultiply.cc:357:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  357 |     register double inv_squared_magnitude;
      |                     ^~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-qtransform.o `test -f 'qtransform.cc' || echo './'`qtransform.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-quicksort.o `test -f 'quicksort.cc' || echo './'`quicksort.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-ranlib.o `test -f 'ranlib.cc' || echo './'`ranlib.cc
In file included from qtransform.h:35,
                 from qtransform.cc:32:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
qtransform.cc: In function 'void qtransform(const Coord&, const Quat&, Real (*)[3], int)':
qtransform.cc:65:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   65 |     register int a;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-rep.o `test -f 'rep.cc' || echo './'`rep.cc
rep.cc: In constructor 'IntVector::IntVector(int)':
rep.cc:77:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   77 |    register int i;
      |                 ^
rep.cc: In constructor 'IntVector::IntVector(int, int, int)':
rep.cc:95:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   95 |    register int i;
      |                 ^
rep.cc: In copy constructor 'IntVector::IntVector(const IntVector&)':
rep.cc:129:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  129 |    for (register unsigned int i=0; i<number_of_pts; i++) {
      |                               ^
rep.cc: In member function 'virtual Representation& IntVector::operator=(const Representation&)':
rep.cc:237:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  237 |    register unsigned int i;
      |                          ^
rep.cc: In constructor 'RealVector::RealVector(int, const double&, const double&, const double&)':
rep.cc:329:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  329 |    register int i=0;
      |                 ^
rep.cc: In copy constructor 'RealVector::RealVector(const RealVector&)':
rep.cc:428:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  428 |    for (register unsigned int i=0; i<original.number_of_pts; i++) {
      |                               ^
rep.cc: In member function 'virtual Representation& RealVector::operator=(const Representation&)':
rep.cc:553:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  553 |    register unsigned int i;
      |                          ^
rep.cc: In copy constructor 'ConstrainedRealVector::ConstrainedRealVector(const ConstrainedRealVector&)':
rep.cc:641:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  641 |    for (register unsigned int i=0; i<original.number_of_pts; i++) {
      |                               ^
rep.cc: In member function 'void ConstrainedRealVector::normalize()':
rep.cc:753:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  753 |       register unsigned int i;
      |                             ^
rep.cc:754:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  754 |       register double tempsum = 0.0, hypotenuse;
      |                       ^~~~~~~
rep.cc:754:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  754 |       register double tempsum = 0.0, hypotenuse;
      |                                      ^~~~~~~~~~
rep.cc: In member function 'virtual Representation& ConstrainedRealVector::operator=(const Representation&)':
rep.cc:812:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  812 |    register unsigned int i;
      |                          ^
rep.cc: In copy constructor 'BitVector::BitVector(const BitVector&)':
rep.cc:900:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  900 |    for (register unsigned int i=0; i<number_of_pts; i++) {
      |                               ^
rep.cc: In member function 'virtual Representation& BitVector::operator=(const Representation&)':
rep.cc:994:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  994 |    register unsigned int i;
      |                          ^
In function 'IMIN(long, long)',
    inlined from 'ignpoi(double const&)' at ranlib.cc:1144:27:
ranlib.cc:54:67: warning: 'm' may be used uninitialized [-Wmaybe-uninitialized]
   54 | inline long IMIN(const long a, const long b) { return ((a) <= (b) ? (a) : (b)) ; }
      |                                                       ~~~~~~~~~~~~^~~~~~~~~~~~
ranlib.cc: In function 'ignpoi(double const&)':
ranlib.cc:995:33: note: 'm' was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |                                 ^
ranlib.cc:1136:5: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized]
 1136 |     if(u <= p0) return ignpoi;
      |     ^~
ranlib.cc:996:58: note: 'p' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                          ^
ranlib.cc:1023:5: warning: 'l' may be used uninitialized [-Wmaybe-uninitialized]
 1023 |     if(ignpoi >= l) return ignpoi;
      |     ^~
ranlib.cc:995:31: note: 'l' was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |                               ^
ranlib.cc:1030:9: warning: 'd' may be used uninitialized [-Wmaybe-uninitialized]
 1030 |     if(d*u >= difmuk*difmuk*difmuk) return ignpoi;
      |        ~^~
ranlib.cc:996:26: note: 'd' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                          ^
ranlib.cc:1017:13: warning: 's' may be used uninitialized [-Wmaybe-uninitialized]
 1017 |     g = mu+s*snorm();
      |            ~^~~~~~~~
ranlib.cc:996:71: note: 's' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                                       ^
ranlib.cc:1092:5: warning: 'ignpoi' may be used uninitialized [-Wmaybe-uninitialized]
 1092 |     if(ignpoi >= 10) goto S80;
      |     ^~
ranlib.cc:995:14: note: 'ignpoi' was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |              ^~~~~~
ranlib.cc:1104:7: warning: 'difmuk' may be used uninitialized [-Wmaybe-uninitialized]
 1104 |     v = difmuk/fk;
      |     ~~^~~~~~~~~~~
ranlib.cc:996:32: note: 'difmuk' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                ^~~~~~
ranlib.cc:1102:9: warning: 'fk' may be used uninitialized [-Wmaybe-uninitialized]
 1102 |     del = 8.333333E-2/fk;
      |     ~~~~^~~~~~~~~~~~~~~~
ranlib.cc:996:41: note: 'fk' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                         ^~
ranlib.cc:1116:38: warning: 'c0' may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                ~~~~~~~~~~~~~~~~~~~~~~^~~~
ranlib.cc:996:14: note: 'c0' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |              ^~
ranlib.cc:1116:31: warning: 'c1' may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                 ~~~~~~~~~~~~~~^~~~
ranlib.cc:996:17: note: 'c1' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                 ^~
ranlib.cc:1116:24: warning: 'c2' may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                  ~~~~~~^~~~
ranlib.cc:996:20: note: 'c2' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                    ^~
ranlib.cc:1116:21: warning: 'c3' may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                   ~~^~~
ranlib.cc:996:23: note: 'c3' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                       ^~
ranlib.cc:1116:8: warning: 'omega' may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |     ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ranlib.cc:996:52: note: 'omega' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                    ^~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-scauchy.o `test -f 'scauchy.cc' || echo './'`scauchy.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-setflags.o `test -f 'setflags.cc' || echo './'`setflags.cc
scauchy.cc: In function 'Real scauchy2()':
scauchy.cc:81:15: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |               ^
scauchy.cc:81:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                  ^
scauchy.cc:81:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                     ^~
scauchy.cc:81:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                         ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-simanneal.o `test -f 'simanneal.cc' || echo './'`simanneal.cc
setflags.cc: In function 'setflags(int, char const**, char const*)':
setflags.cc:293:20: warning: '__strncpy_chk' specified bound depends on the length of the source argument [-Wstringop-truncation]
  293 |             strncpy(logFileName, dock_param_fn, strlen(dock_param_fn)-4);
      |                    ^
setflags.cc:293:55: note: length computed here
  293 |             strncpy(logFileName, dock_param_fn, strlen(dock_param_fn)-4);
      |                                                 ~~~~~~^~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-sort_enrg.o `test -f 'sort_enrg.cc' || echo './'`sort_enrg.cc
In file included from getInitialState.h:31,
                 from simanneal.h:33,
                 from simanneal.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
simanneal.cc: In function 'void simanneal(int*, int, int*, GroupEnergy*, int, const Real&, const char (*)[128], Real*, Real*, Real*, Boole, Real (*)[3], Real (*)[3], const char*, EnergyTables*, Real*, Boole, EnergyComponent*, int, int, FourByteLong (*)[2], const clock_t&, MapType*, int, int, NonbondParam*, int, int, State, State*, const Real&, Boole, const Real&, Boole, const char*, const Real*, const Real&, Boole, const Real&, const tms&, const int (*)[2048], const Real&, Boole, const Real&, const char*, int, int, int, const Real&, Boole, const Real&, const int*, Real (*)[3], Boole, Boole, int, int, const Real&, const Real&, Boole, const Real&, Boole, const char*, Boole, short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, const Real (*)[8][2], const int*, Boole, Boole, Boole, const Real&, const Real&, int, int, const int*, Boole, const Real&, const Real&, const ParameterEntry*, const Real&, GridMapSetInfo*, Boole, Boole, const char (*)[256], Unbound_Model, int, FILE*)':
simanneal.cc:188:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  188 |     register int i = 0;
      |                  ^
simanneal.cc:189:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  189 |     register int nacc = 0;
      |                  ^~~~
simanneal.cc:190:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  190 |     register int nAcc = 0;
      |                  ^~~~
simanneal.cc:191:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  191 |     register int nAccProb = 0;
      |                  ^~~~~~~~
simanneal.cc:192:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  192 |     register int nedge = 0;
      |                  ^~~~~
simanneal.cc:193:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  193 |     register int nrej = 0;
      |                  ^~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-stack.o `test -f 'stack.cc' || echo './'`stack.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-stop.o `test -f 'stop.cc' || echo './'`stop.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-strindex.o `test -f 'strindex.cc' || echo './'`strindex.cc
strindex.cc: In function 'int strindex(const char*, const char*)':
strindex.cc:54:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                  ^
strindex.cc:54:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                    ^~
strindex.cc:54:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                       ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-success.o `test -f 'success.cc' || echo './'`success.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-support.o `test -f 'support.cc' || echo './'`support.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-swap.o `test -f 'swap.cc' || echo './'`swap.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-threadlog.o `test -f 'threadlog.cc' || echo './'`threadlog.cc
In file included from eval.h:38,
                 from support.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
support.cc: In copy constructor 'Population::Population(const Population&)':
support.cc:52:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   52 |    register int i;
      |                 ^
support.cc: In member function 'void Population::msort(int)':
support.cc:147:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  147 |    register int i;
      |                 ^
support.cc: In member function 'void Population::print(FILE*, int) const':
support.cc:187:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  187 |    register int i;
      |                 ^
support.cc: In member function 'void Population::printPopulationAsStates(FILE*, int, int) const':
support.cc:348:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  348 |    register int i;
      |                 ^
support.cc: In member function 'void Population::printPopulationAsCoordsEnergies(FILE*, int, int) const':
support.cc:388:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  388 |    register int i;
      |                 ^
support.cc: In member function 'void Population::set_eob(int*)':
support.cc:433:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  433 |    for (register int i=0; i<MAX_TORS; i++) {
      |                      ^
support.cc: In constructor 'Genotype::Genotype(unsigned int, Representation**)':
support.cc:456:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                          ^
support.cc:456:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                             ^
support.cc:456:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                                ^
support.cc: In copy constructor 'Genotype::Genotype(const Genotype&)':
support.cc:484:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  484 |    register unsigned int i;
      |                          ^
support.cc: In destructor 'Genotype::~Genotype()':
support.cc:512:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  512 |    register unsigned int i;
      |                          ^
support.cc: In constructor 'Phenotype::Phenotype(unsigned int, Representation**, Eval*)':
support.cc:674:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                          ^
support.cc:674:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                             ^
support.cc:674:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                                ^
support.cc: In copy constructor 'Phenotype::Phenotype(const Phenotype&)':
support.cc:700:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  700 |    register unsigned int i;
      |                          ^
support.cc: In member function 'Phenotype& Phenotype::operator=(const Phenotype&)':
support.cc:731:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  731 |    register unsigned int i;
      |                          ^
support.cc: In destructor 'Phenotype::~Phenotype()':
support.cc:781:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  781 |    register unsigned int i;
      |                          ^
support.cc: In member function 'Population& Population::operator=(const Population&)':
support.cc:968:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  968 |    register int i;
      |                 ^
threadlog.cc:72: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
   72 | #pragma omp critical
      | 
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-timesys.o `test -f 'timesys.cc' || echo './'`timesys.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-timesyshms.o `test -f 'timesyshms.cc' || echo './'`timesyshms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-torNorVec.o `test -f 'torNorVec.cc' || echo './'`torNorVec.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-torsion.o `test -f 'torsion.cc' || echo './'`torsion.cc
torNorVec.cc: In function 'void torNorVec(const Real (*)[3], int, const int (*)[2048], Real (*)[3], int, FILE*)':
torNorVec.cc:47:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   47 |     register int xyz = 0;
      |                  ^~~
torNorVec.cc:48:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   48 |     register int j = 0;
      |                  ^
torNorVec.cc: In function 'void update_torsion_vectors(const Real (*)[3], int, const int (*)[2048], Real (*)[3], Molecule*, int, int, FILE*)':
torNorVec.cc:104:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  104 |     register int i=0, j=0;
      |                  ^
torNorVec.cc:104:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  104 |     register int i=0, j=0;
      |                       ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-trilinterp.o `test -f 'trilinterp.cc' || echo './'`trilinterp.cc
torsion.cc: In function 'void torsion(const State&, Real (*)[3], const Real (*)[3], const int (*)[2048], int)':
torsion.cc:62:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   62 |     register double crdtemp[SPACE];
      |                     ^~~~~~~
torsion.cc:63:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   63 |     register double  d[SPACE];
      |                      ^
torsion.cc:64:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   64 |     register double sv[SPACE];
      |                     ^~
torsion.cc:65:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   65 |     register double ov[SPACE];
      |                     ^~
torsion.cc:66:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   66 |     register double  k[SPACE][SPACE];
      |                      ^
torsion.cc:67:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                     ^
torsion.cc:67:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                        ^
torsion.cc:67:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                           ^
torsion.cc:67:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                              ^~~
torsion.cc:67:35: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                                   ^~~~~~~~
torsion.cc:68:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                  ^
torsion.cc:68:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                     ^
torsion.cc:68:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                        ^~~~~
torsion.cc:68:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                               ^~~~~~
torsion.cc:68:39: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                                       ^~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-usage.o `test -f 'usage.cc' || echo './'`usage.cc
trilinterp.cc: In function 'Real trilinterp(int, int, const Real (*)[3], const Real*, const Real*, const int*, MapType*, const GridMapSetInfo*, const int*, EnergyComponent*, EnergyComponent*, EnergyComponent*)':
trilinterp.cc:88:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   88 |     register int i;               /* i-th atom */
      |                  ^
trilinterp.cc:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                         ^
trilinterp.cc:92:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                            ^
trilinterp.cc:92:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                               ^
trilinterp.cc:93:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                         ^
trilinterp.cc:93:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                              ^
trilinterp.cc:93:35: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                                   ^
trilinterp.cc:96:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   96 |         register int AtomType;        /* atom type */
      |                      ^~~~~~~~
trilinterp.cc:97:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                      ^~
trilinterp.cc:97:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                           ^~
trilinterp.cc:97:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                                ^~
trilinterp.cc:98:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                      ^~
trilinterp.cc:98:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                           ^~
trilinterp.cc:98:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                                ^~
trilinterp.cc:99:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                         ^
trilinterp.cc:99:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                           ^
trilinterp.cc:99:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                             ^
trilinterp.cc:98:22: warning: variable 'u1' set but not used [-Wunused-but-set-variable]
   98 |         register int u1,  v1,  w1;
      |                      ^~
trilinterp.cc:98:27: warning: variable 'v1' set but not used [-Wunused-but-set-variable]
   98 |         register int u1,  v1,  w1;
      |                           ^~
trilinterp.cc:98:32: warning: variable 'w1' set but not used [-Wunused-but-set-variable]
   98 |         register int u1,  v1,  w1;
      |                                ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-weedbonds.o `test -f 'weedbonds.cc' || echo './'`weedbonds.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-warn_bad_file.o `test -f 'warn_bad_file.cc' || echo './'`warn_bad_file.cc
weedbonds.cc: In function 'void weedbonds(int, const char (*)[5], const int*, int, const int (*)[2048], int (*)[2048], int*, NonbondParam*, int*, int, const int*, int, int, FILE*)':
weedbonds.cc:65:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   65 |     register int i = 0;
      |                  ^
weedbonds.cc:66:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   66 |     register int j = 0;
      |                  ^
weedbonds.cc:67:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   67 |     register int k = 0;
      |                  ^
weedbonds.cc: In function 'void print_nonbonds(int, const char (*)[5], const int*, int, const int (*)[2048], int (*)[2048], int, const NonbondParam*, const int*, int, FILE*)':
weedbonds.cc:252:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  252 |     register int i = 0;
      |                  ^
weedbonds.cc:253:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  253 |     register int j = 0;
      |                  ^
weedbonds.cc:254:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  254 |     register int k = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-coliny.o `test -f 'coliny.cc' || echo './'`coliny.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-eintcal.o `test -f 'eintcal.cc' || echo './'`eintcal.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-eintcalPrint.o `test -f 'eintcalPrint.cc' || echo './'`eintcalPrint.cc
eintcal.cc: In function 'Real eintcal(const NonbondParam*, const EnergyTables*, const Real (*)[3], int, int*, GroupEnergy*, Boole, Boole, const Real&, const Real*, Boole, Boole, int, FILE*)':
eintcal.cc:206:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  206 |             register double r2;
      |                             ^~
In file included from eintcalPrint.cc:29:
./eintcal.cc: In function 'Real eintcalPrint(const NonbondParam*, const EnergyTables*, const Real (*)[3], int, int*, GroupEnergy*, Boole, Boole, const Real&, const Real*, Boole, Boole, int, const int*, const char (*)[3], int, FILE*)':
./eintcal.cc:206:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  206 |             register double r2;
      |                             ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-intnbtable.o `test -f 'intnbtable.cc' || echo './'`intnbtable.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4-nbe.o `test -f 'nbe.cc' || echo './'`nbe.cc
intnbtable.cc: In function 'void intnbtable(Boole*, int, int, const GridMapSetInfo*, const Real&, const Real&, int, int, Boole, const Real&, Linear_FE_Model, const double&, EnergyTables*, Boole, FILE*, int)':
intnbtable.cc:83:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   83 |     register int i;
      |                  ^
intnbtable.cc: In function 'void setup_distdepdiel(FILE*, int, EnergyTables*)':
intnbtable.cc:268:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  268 |     register int i=0;
      |                  ^
intnbtable.cc:269:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  269 |     register double distance=0.0L;
      |                     ^~~~~~~~
nbe.cc: In function 'void nbe(const GridMapSetInfo*, const EnergyTables*, int, int, FILE*)':
nbe.cc:64:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   64 |     register int i = 0;
      |                  ^
nbe.cc:65:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   65 |     register int j = 0;
      |                  ^
nbe.cc:66:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   66 |     register int k = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-main.o `test -f 'main.cc' || echo './'`main.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-alea.o `test -f 'alea.cc' || echo './'`alea.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-analysis.o `test -f 'analysis.cc' || echo './'`analysis.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from hybrids.h:40,
                 from main.cc:98:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
main.cc: In function 'int main(int, const char**)':
main.cc:480:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  480 | register int i = 0;
      |              ^
main.cc:481:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  481 | register int j = 0;
      |              ^
main.cc:482:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  482 | register int k = 0;
      |              ^
main.cc:484:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  484 | register int xyz = 0;
      |              ^~~
main.cc:3282:21: warning: unused variable 'thread_num' [-Wunused-variable]
 3282 |                 int thread_num=omp_get_thread_num();
      |                     ^~~~~~~~~~
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from analysis.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
analysis.cc: In function 'void analysis(int, int*, GroupEnergy*, int, const char (*)[128], const Real*, const Real*, const Real*, Boole, const Real&, const Real (*)[3], const EnergyTables*, MapType*, const Real*, int, int, const NonbondParam*, int, int, State*, const char*, const Real*, Boole, Boole, const int (*)[2048], const int*, const Real (*)[3], const char*, const Real&, Boole, int, const int*, Boole, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Boole, Unbound_Model, Boole, int, int, FILE*)':
analysis.cc:138:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  138 |     register int   i = 0;
      |                    ^
analysis.cc:139:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  139 |     register int   j = 0;
      |                    ^
analysis.cc:140:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  140 |     register int   k = 0;
      |                    ^
analysis.cc:141:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  141 |     register int   t = 0;
      |                    ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-atom_parameter_manager.o `test -f 'atom_parameter_manager.cc' || echo './'`atom_parameter_manager.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-banner.o `test -f 'banner.cc' || echo './'`banner.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-bestpdb.o `test -f 'bestpdb.cc' || echo './'`bestpdb.cc
bestpdb.cc: In function 'void bestpdb(int, const int*, const int (*)[2000], const Real*, const Real (*)[2048][3], const char (*)[128], int, Boole, const Real*, int, FILE*)':
bestpdb.cc:58:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   58 |     register int  i=0,
      |                   ^
bestpdb.cc:59:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   59 |                   j=0,
      |                   ^
bestpdb.cc:60:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   60 |                   k=0,
      |                   ^
bestpdb.cc:61:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   61 |                   confnum=0;
      |                   ^~~~~~~
bestpdb.cc:123:62: warning: '%4d' directive writing between 4 and 10 bytes into a region of size 9 [-Wformat-overflow=]
  123 |                     sprintf(AtmNamResNamNumInsCode, "%-11.11s%4d%-4.4s", &atomstuff[j][11],
      |                                                              ^~~
bestpdb.cc:123:53: note: directive argument in the range [1, 1073741823]
  123 |                     sprintf(AtmNamResNamNumInsCode, "%-11.11s%4d%-4.4s", &atomstuff[j][11],
      |                                                     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:906,
                 from bestpdb.cc:33:
In function 'sprintf',
    inlined from 'bestpdb(int, int const*, int const (*) [2000], double const*, double const (*) [2048][3], char const (*) [128], int, int, double const*, int, _IO_FILE*)' at bestpdb.cc:123:28:
/usr/include/bits/stdio2.h:30:34: note: '__sprintf_chk' output between 20 and 26 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-calculateEnergies.o `test -f 'calculateEnergies.cc' || echo './'`calculateEnergies.cc
main.cc:1250:89: warning: '%s' directive writing up to 4095 bytes into a region of size 313 [-Wformat-overflow=]
 1250 |                     prStr( error_message,"%s:         Edit the parameter library file \"%s\" and try again.\n", programname, FN_parameter_library );
      |                                                                                         ^~                                   ~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:906,
                 from /usr/include/c++/13/cstdio:42,
                 from /usr/include/c++/13/ext/string_conversions.h:45,
                 from /usr/include/c++/13/bits/basic_string.h:4072,
                 from /usr/include/c++/13/string:54,
                 from main.cc:71:
In function 'sprintf',
    inlined from 'main' at main.cc:1250:26:
/usr/include/bits/stdio2.h:30:34: note: '__sprintf_chk' output 61 or more bytes (assuming 4156) into a destination of size 356
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-call_glss.o `test -f 'call_glss.cc' || echo './'`call_glss.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from call_glss.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
call_glss.cc: In function 'State call_glss(Global_Search*, Local_Search*, const State&, unsigned int, unsigned int, int, FILE*, const Output_pop_stats&, Molecule*, Eval*, Boole, Boole, Boole, const GridMapSetInfo*, const char*, int*)':
call_glss.cc:259:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  259 |     register unsigned int i;
      |                           ^
call_glss.cc:260:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  260 |     register int j;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-call_ls.o `test -f 'call_ls.cc' || echo './'`call_ls.cc
In file included from eval.h:38,
                 from support.h:237,
                 from ls.h:40,
                 from call_ls.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
call_ls.cc: In function 'Representation** cnv_state_to_rep(const State&)':
call_ls.cc:50:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   50 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-center_ligand.o `test -f 'center_ligand.cc' || echo './'`center_ligand.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-changeState.o `test -f 'changeState.cc' || echo './'`changeState.cc
In file included from changeState.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
changeState.cc: In function 'State changeState(const State&, const Real&, const Real&, int, const Real (*)[8][2], const int*)':
changeState.cc:46:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   46 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-check_header_float.o `test -f 'check_header_float.cc' || echo './'`check_header_float.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-check_header_int.o `test -f 'check_header_int.cc' || echo './'`check_header_int.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-check_header_line.o `test -f 'check_header_line.cc' || echo './'`check_header_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-cluster_analysis.o `test -f 'cluster_analysis.cc' || echo './'`cluster_analysis.cc
cluster_analysis.cc: In function 'int cluster_analysis(const Real&, int (*)[2000], int*, const int*, int, int, const int*, const Real (*)[2048][3], const Real (*)[3], const Real*, Real (*)[2000], Boole, Boole, Real (*)[3], int, Real*, Boole, int)':
cluster_analysis.cc:61:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   61 |     register int compare = 0,
      |                  ^~~~~~~
cluster_analysis.cc:62:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   62 |                  i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-clmode.o `test -f 'clmode.cc' || echo './'`clmode.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-cnv_state_to_coords.o `test -f 'cnv_state_to_coords.cc' || echo './'`cnv_state_to_coords.cc
In file included from clmode.h:40,
                 from clmode.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
clmode.cc: In function 'void clmode(int, const Real&, const char*, const clock_t&, const tms&, Boole, const char*, const Real (*)[3], const Real*, Boole, Boole, const char*, Boole, int, int, FILE*)':
clmode.cc:62:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   62 |     register int xyz = 0;
      |                  ^~~
clmode.cc:89:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   89 |     register int i = 0;
      |                  ^
clmode.cc:90:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   90 |     register int j = 0;
      |                  ^
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from cnv_state_to_coords.cc:37:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
clmode.cc:210:28: warning: 'strncpy' output may be truncated copying 30 bytes from a string of length 255 [-Wstringop-truncation]
  210 |                     strncpy( atomstuff[atomCounter], line, (size_t)30 );
      |                            ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-com.o `test -f 'com.cc' || echo './'`com.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-conformation_sampler.o `test -f 'conformation_sampler.cc' || echo './'`conformation_sampler.cc
In file included from eval.h:38,
                 from support.h:237,
                 from conformation_sampler.h:29,
                 from conformation_sampler.cc:27:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
conformation_sampler.cc: In constructor 'ConformationSampler::ConformationSampler(const State&, int, Eval*, int, FILE*)':
conformation_sampler.cc:99:10: warning: variable 'base_q' set but not used [-Wunused-but-set-variable]
   99 |     Quat base_q = probe_point.readQuat();
      |          ^~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-dimLibrary.o `test -f 'dimLibrary.cc' || echo './'`dimLibrary.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from pso.h:4,
                 from dimLibrary.cc:6:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
dimLibrary.cc: In function 'void copyDimension(State*, const Position&)':
dimLibrary.cc:17:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   17 |         register int i, j;
      |                      ^
dimLibrary.cc:17:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   17 |         register int i, j;
      |                         ^
dimLibrary.cc: In function 'void copyState2Dimension(Position*, const State&)':
dimLibrary.cc:34:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   34 |         register int i, j;
      |                      ^
dimLibrary.cc:34:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   34 |         register int i, j;
      |                         ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-distdepdiel.o `test -f 'distdepdiel.cc' || echo './'`distdepdiel.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-stateLibrary.o `test -f 'stateLibrary.cc' || echo './'`stateLibrary.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-readfield.o `test -f 'readfield.cc' || echo './'`readfield.cc
In file included from stateLibrary.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
stateLibrary.cc: In function 'void initialiseState(State*)':
stateLibrary.cc:40:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   40 |     register int i;
      |                  ^
stateLibrary.cc: In function 'void copyState(State*, const State&)':
stateLibrary.cc:61:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   61 |     register int i;
      |                  ^
stateLibrary.cc: In function 'void printState(FILE*, State, int)':
stateLibrary.cc:90:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   90 |     register int i;
      |                  ^
stateLibrary.cc: In function 'int checkState(FILE*, const State*)':
stateLibrary.cc:199:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  199 |     register int i;
      |                  ^
stateLibrary.cc: In function 'Molecule copyStateToMolecule(const State*, Molecule*)':
stateLibrary.cc:251:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  251 |     register int i;
      |                  ^
readfield.cc: In function 'void readfield(GridMapSetInfo*, char*, const clock_t&, const tms&, int, FILE*)':
readfield.cc:49:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   49 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-readmap.o `test -f 'readmap.cc' || echo './'`readmap.cc
readfield.cc:83:17: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
   83 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:108:17: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  108 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:116:17: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  116 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:123:17: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  123 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-readPDBQT.o `test -f 'readPDBQT.cc' || echo './'`readPDBQT.cc
readmap.cc: In function 'Statistics readmap(char*, int, const clock_t&, const tms&, Boole, Boole*, int, const GridMapSetInfo*, MapType*, char, FILE*)':
readmap.cc:82:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   82 |     register int xyz = 0;
      |                  ^~~
readmap.cc:83:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   83 |     register int i = 0;
      |                  ^
readmap.cc:84:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   84 |     register int j = 0;
      |                  ^
readmap.cc:85:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   85 |     register int k = 0;
      |                  ^
readPDBQT.cc: In function 'Molecule readPDBQT(char*, int, int*, Real (*)[3], Real*, Boole*, int*, int*, char (*)[5], char*, char*, Boole, char (*)[128], int*, int*, Boole*, int*, int*, Real*, Real*, int*, int*, int (*)[2048], Real (*)[3], int*, int*, NonbondParam*, const clock_t&, const tms&, const char*, int*, int*, int, char (*)[256], int*, int, int, FILE*)':
readPDBQT.cc:138:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  138 |         register int    i = 0;
      |                         ^
readPDBQT.cc:139:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  139 |         register int    j = 0;
      |                         ^
readPDBQT.cc:133:25: warning: variable 'B_has_conect_records' set but not used [-Wunused-but-set-variable]
  133 |         Boole           B_has_conect_records = FALSE;
      |                         ^~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-read_parameter_library.o `test -f 'read_parameter_library.cc' || echo './'`read_parameter_library.cc
readPDBQT.cc:370:308: warning: ' could not be found;
	check ...' directive writing 238 bytes into a region of size between 195 and 212 [-Wformat-overflow=]
  370 |                     prStr(message, "%s: WARNING: the atom type (%s) of atom number %d could not be found;\n\tcheck that this atom type is listed after the \"ligand_types\" keyword in the DPF,\n\tand make sure to add a \"map\" keyword to the DPF for this atom type.\n\tNote that AutoDock will use the default atom type = 1, instead.\n\n", programname, this_parameter_entry.autogrid_type, natom+1);
      |                                                                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:906,
                 from readPDBQT.cc:33:
In function 'sprintf',
    inlined from 'readPDBQT(char*, int, int*, double (*) [3], double*, int*, int*, int*, char (*) [5], char*, char*, int, char (*) [128], int*, int*, int*, int*, int*, double*, double*, int*, int*, int (*) [2048], double (*) [3], int*, int*, nonbond_param*, long const&, tms const&, char const*, int*, int*, int, char (*) [256], int*, int, int, _IO_FILE*)' at readPDBQT.cc:370:26:
/usr/include/bits/stdio2.h:30:34: note: '__sprintf_chk' output 283 or more bytes (assuming 300) into a destination of size 256
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
read_parameter_library.cc: In function 'void setup_parameter_library(FILE*, int, const char*, Unbound_Model, Linear_FE_Model*)':
read_parameter_library.cc:207:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  207 |     register int counter = 0;
      |                  ^~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-eval.o `test -f 'eval.cc' || echo './'`eval.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-gencau.o `test -f 'gencau.cc' || echo './'`gencau.cc
In file included from eval.h:38,
                 from eval.cc:39:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
eval.cc: In function 'void make_state_from_rep(const Representation* const*, State*, int, FILE*)':
eval.cc:72:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   72 |    register int i;
      |                 ^
eval.cc: In member function 'double Eval::eval(int)':
eval.cc:135:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  135 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-getrms.o `test -f 'getrms.cc' || echo './'`getrms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-get_atom_type.o `test -f 'get_atom_type.cc' || echo './'`get_atom_type.cc
getrms.cc: In function 'Real getrms(const Real (*)[3], const Real (*)[3], Boole, Boole, int, const int*, Boole, int)':
getrms.cc:48:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                  ^
getrms.cc:48:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                     ^
getrms.cc:48:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                        ^~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-getInitialState.o `test -f 'getInitialState.cc' || echo './'`getInitialState.cc
get_atom_type.cc: In function 'int get_atom_type(const char*)':
get_atom_type.cc:53:9: warning: variable 'bond_index' set but not used [-Wunused-but-set-variable]
   53 |     int bond_index = -1;
      |         ^~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-getpdbcrds.o `test -f 'getpdbcrds.cc' || echo './'`getpdbcrds.cc
In file included from getInitialState.h:31,
                 from getInitialState.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
getInitialState.cc: In function 'void getInitialState(Real*, const Real&, State*, State*, State*, Boole, Boole, Boole, const Real*, const Real*, const Real*, Real (*)[3], const Real (*)[3], const char (*)[128], EnergyComponent*, const EnergyTables*, Boole, MapType*, int, int, int*, GroupEnergy*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], int, int, const Real&, int, const int*, Boole, const Real&, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Unbound_Model, int, FILE*)':
getInitialState.cc:111:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  111 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-gs.o `test -f 'gs.cc' || echo './'`gs.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-initautodock.o `test -f 'initautodock.cc' || echo './'`initautodock.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from gs.cc:42:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
gs.cc: In function 'double worst_in_window(const double*, int, int, FILE*)':
gs.cc:73:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   73 |    register int i;
      |                 ^
gs.cc: In function 'double avg_in_window(const double*, int, FILE*)':
gs.cc:107:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  107 |    register int i;
      |                 ^
gs.cc: In member function 'double Genetic_Algorithm::worst_this_generation(const Population&, int, FILE*)':
gs.cc:130:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  130 |    register unsigned int i;
      |                          ^
gs.cc: In member function 'void Genetic_Algorithm::make_table(int, const Real&, int, FILE*)':
gs.cc:287:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  287 |    register int i, j;
      |                 ^
gs.cc:287:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  287 |    register int i, j;
      |                    ^
gs.cc: In member function 'void Genetic_Algorithm::initialize(unsigned int, unsigned int, int, FILE*)':
gs.cc:396:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  396 |    register unsigned int i;
      |                          ^
gs.cc: In member function 'void Genetic_Algorithm::crossover(Population&, int, FILE*)':
gs.cc:596:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  596 |    register unsigned int i;
      |                          ^
In file included from constants.h:28,
                 from structs.h:30,
                 from rep.h:45,
                 from support.h:236:
autocomm.h:166:60: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); }
      |                                                            ^~~~~~~~~
gs.cc:641:10: note: in expansion of macro 'assertQuatOK'
  641 |          assertQuatOK( q_father );
      |          ^~~~~~~~~~~~
autocomm.h:166:60: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); }
      |                                                            ^~~~~~~~~
gs.cc:652:10: note: in expansion of macro 'assertQuatOK'
  652 |          assertQuatOK( q_mother );
      |          ^~~~~~~~~~~~
gs.cc: In member function 'void Genetic_Algorithm::crossover_arithmetic(Genotype&, Genotype&, const Real&, int, FILE*)':
gs.cc:877:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  877 |    register unsigned int i;
      |                          ^
gs.cc: In member function 'void Genetic_Algorithm::selection_proportional(Population&, Individual*, int, FILE*)':
gs.cc:983:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  983 |    register unsigned int i=0, start_index = 0;
      |                          ^
gs.cc:983:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  983 |    register unsigned int i=0, start_index = 0;
      |                               ^~~~~~~~~~~
gs.cc: In member function 'void Genetic_Algorithm::selection_tournament(Population&, Individual*, int, FILE*)':
gs.cc:1262:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 1262 |    register unsigned int i = 0, start_index = 0;
      |                          ^
gs.cc:1262:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 1262 |    register unsigned int i = 0, start_index = 0;
      |                                 ^~~~~~~~~~~
gs.cc: In member function 'void Genetic_Algorithm::selection_linear_ranking(Population&, Individual*, int, FILE*)':
gs.cc:1327:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 1327 |    register unsigned int i = 0, start_index = 0;
      |                          ^
gs.cc:1327:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 1327 |    register unsigned int i = 0, start_index = 0;
      |                                 ^~~~~~~~~~~
gs.cc: In member function 'virtual int Genetic_Algorithm::search(Population&, Eval*, int, FILE*)':
gs.cc:1420:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
 1420 |    register unsigned int i;
      |                          ^
In file included from initautodock.h:31,
                 from initautodock.cc:36:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
initautodock.cc: In function 'void initautodock(const char (*)[128], Real (*)[3], const Real (*)[3], int, int, State*, const int (*)[2048], const Real (*)[3], int, int, const GridMapSetInfo*)':
initautodock.cc:76:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   76 |     register int   xyz = 0;
      |                    ^~~
initautodock.cc:77:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   77 |     register int   i = 0;
      |                    ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-input_state.o `test -f 'input_state.cc' || echo './'`input_state.cc
In file included from input_state.h:30,
                 from input_state.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
input_state.cc: In function 'int input_state(State*, FILE*, const char*, int, int*, Real*, Real*, char*)':
input_state.cc:70:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
   70 |             (void) fgets(myline, LINELEN, fp);
      |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-investigate.o `test -f 'investigate.cc' || echo './'`investigate.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-linpack.o `test -f 'linpack.cc' || echo './'`linpack.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from investigate.h:33,
                 from investigate.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
investigate.cc: In function 'void investigate(int, int*, GroupEnergy*, const Real*, const Real*, const Real*, Boole, Real (*)[3], const Real (*)[3], const EnergyTables*, int, MapType*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], Boole, const short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, Real (*)[8][2], int*, Boole, Boole, const char*, int, int, const Real&, const Real&, const int*, Boole, const Real&, const Real&, const Real&, GridMapSetInfo*, Boole, Boole, Boole, int, int, int, FILE*)':
investigate.cc:103:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  103 |     register int Test = -1;
      |                  ^~~~
investigate.cc:106:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  106 |     register int i = 0;
      |                  ^
investigate.cc:120:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  120 |     register int NumOutside = 0;
      |                  ^~~~~~~~~~
investigate.cc:121:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  121 |     register int LocalTest = 0;
      |                  ^~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-ls.o `test -f 'ls.cc' || echo './'`ls.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-mapping.o `test -f 'mapping.cc' || echo './'`mapping.cc
In file included from eval.h:38,
                 from support.h:237,
                 from ls.h:40,
                 from ls.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
In file included from eval.h:38,
                 from support.h:237,
                 from mapping.cc:37:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
ls.cc: In function 'Phenotype genPh(const Phenotype&, const Real&, const Real*, Real*, int, FILE*)':
ls.cc:46:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   46 |    register unsigned int i, index = 0;
      |                          ^
ls.cc:46:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   46 |    register unsigned int i, index = 0;
      |                             ^~~~~
ls.cc: In member function 'virtual Boole Solis_Wets::SW(Phenotype&, int, FILE*)':
ls.cc:88:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                          ^
ls.cc:88:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                             ^
ls.cc:88:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                                ^~~~~~~~~~~~~
ls.cc:88:51: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                                                   ^~~~~~~~~~~~
ls.cc:89:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   89 |    register Real temp_rho = rho;
      |                  ^~~~~~~~
ls.cc:92:9: warning: unused variable 'thisQuat' [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |         ^~~~~~~~
ls.cc:92:19: warning: unused variable 'prevQuat' [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |                   ^~~~~~~~
ls.cc:92:29: warning: unused variable 'startQuat' [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |                             ^~~~~~~~~
ls.cc: In member function 'virtual Boole Pseudo_Solis_Wets::SW(Phenotype&, int, FILE*)':
ls.cc:248:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                          ^
ls.cc:248:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                             ^
ls.cc:248:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                ^~~~~~~~~~~~~
ls.cc:248:51: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                                   ^~~~~~~~~~~~
ls.cc:248:70: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-mingw_getrusage.o `test -f 'mingw_getrusage.cc' || echo './'`mingw_getrusage.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-minmeanmax.o `test -f 'minmeanmax.cc' || echo './'`minmeanmax.cc
In file included from eval.h:38,
                 from support.h:237,
                 from minmeanmax.cc:39:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
minmeanmax.cc: In function 'void minmeanmax(FILE*, const Population&, int, const GridMapSetInfo*)':
minmeanmax.cc:51:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                 ^
minmeanmax.cc:51:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                      ^
minmeanmax.cc:51:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                           ^
minmeanmax.cc:56:76: warning: variable 'best' set but not used [-Wunused-but-set-variable]
   56 |    double minimum[ 7+MAX_TORS ], sum[ 7+MAX_TORS ], maximum[ 7+MAX_TORS ], best[ 7+MAX_TORS ];
      |                                                                            ^~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-mkNewState.o `test -f 'mkNewState.cc' || echo './'`mkNewState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-mkTorTree.o `test -f 'mkTorTree.cc' || echo './'`mkTorTree.cc
In file included from mkNewState.h:31,
                 from mkNewState.cc:33:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
mkNewState.cc: In function 'void mkNewState(State*, const State*, State*, const Real (*)[3], const int (*)[2048], int, Real (*)[3], const Real (*)[3], int, const Real&, const Real&, const Real&, const Real (*)[8][2], const int*, int, int, FILE*)':
mkNewState.cc:56:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   56 |     register int i;
      |                  ^
mkTorTree.cc: In function 'void mkTorTree(const int*, const int (*)[2048], const char (*)[256], int, int (*)[2048], int*, int*, const char*, const char (*)[5], Boole*, int*, int*, Real*, Real*, int*, int*, int, int, FILE*)':
mkTorTree.cc:88:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   88 |     register int   i = 0;
      |                    ^
mkTorTree.cc:89:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   89 |     register int   j = 0;
      |                    ^
mkTorTree.cc:90:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   90 |     register int   k = 0;
      |                    ^
mkTorTree.cc: At global scope:
mkTorTree.cc:456:5: warning: 'int check_atomnumber(int, const int*, int, int, FILE*)' defined but not used [-Wunused-function]
  456 | int check_atomnumber( const int number, const int *atomnumber, const int nrecord,
      |     ^~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-mkRandomState.o `test -f 'mkRandomState.cc' || echo './'`mkRandomState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-nonbonds.o `test -f 'nonbonds.cc' || echo './'`nonbonds.cc
mkRandomState.cc: In function 'State mkRandomState(int, Real (*)[8][2], int*, GridMapSetInfo*)':
mkRandomState.cc:44:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   44 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-openfile.o `test -f 'openfile.cc' || echo './'`openfile.cc
In file included from nonbonds.cc:35:
mdist.h: In function 'void mdist()':
mdist.h:45:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   45 |         register int i,j;
      |                      ^
mdist.h:45:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   45 |         register int i,j;
      |                        ^
mdist.h:32:25: warning: operation on 'mindist[0][0]' may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:89:5: note: in expansion of macro 'set_minmax'
   89 |     set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on 'maxdist[0][0]' may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:89:5: note: in expansion of macro 'set_minmax'
   89 |     set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on 'mindist[1][1]' may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:96:5: note: in expansion of macro 'set_minmax'
   96 |     set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on 'maxdist[1][1]' may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:96:5: note: in expansion of macro 'set_minmax'
   96 |     set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on 'mindist[2][2]' may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:102:5: note: in expansion of macro 'set_minmax'
  102 |     set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on 'maxdist[2][2]' may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:102:5: note: in expansion of macro 'set_minmax'
  102 |     set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on 'mindist[3][3]' may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:107:5: note: in expansion of macro 'set_minmax'
  107 |     set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming.
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on 'maxdist[3][3]' may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:107:5: note: in expansion of macro 'set_minmax'
  107 |     set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming.
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on 'mindist[4][4]' may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:111:5: note: in expansion of macro 'set_minmax'
  111 |     set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on 'maxdist[4][4]' may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:111:5: note: in expansion of macro 'set_minmax'
  111 |     set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on 'mindist[5][5]' may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:114:5: note: in expansion of macro 'set_minmax'
  114 |     set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on 'maxdist[5][5]' may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:114:5: note: in expansion of macro 'set_minmax'
  114 |     set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on 'mindist[6][6]' may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:116:5: note: in expansion of macro 'set_minmax'
  116 |     set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on 'maxdist[6][6]' may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:116:5: note: in expansion of macro 'set_minmax'
  116 |     set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515
      |     ^~~~~~~~~~
nonbonds.cc: In function 'void printbonds(int, const int*, const int (*)[16], const char*, int, int, FILE*)':
nonbonds.cc:250:13: warning: '?:' using integer constants in boolean context [-Wint-in-bool-context]
  248 |         for (int j=0; j<
      |                       ~~
  249 |             B_print_all_bonds
      |             ~~~~~~~~~~~~~~~~~
  250 |             ? MAX_NBONDS // loop over all the slots for this atom's "j" bonds
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  251 |             : nbonds[i]; // loop over this atom's "j" bonds
      |             ~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-output_state.o `test -f 'output_state.cc' || echo './'`output_state.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-parse_dpf_line.o `test -f 'parse_dpf_line.cc' || echo './'`parse_dpf_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-parse_param_line.o `test -f 'parse_param_line.cc' || echo './'`parse_param_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-parse_PDBQT_line.o `test -f 'parse_PDBQT_line.cc' || echo './'`parse_PDBQT_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-parse_trj_line.o `test -f 'parse_trj_line.cc' || echo './'`parse_trj_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-parsetypes.o `test -f 'parsetypes.cc' || echo './'`parsetypes.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-print_2x.o `test -f 'print_2x.cc' || echo './'`print_2x.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-print_atomic_energies.o `test -f 'print_atomic_energies.cc' || echo './'`print_atomic_energies.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-print_avsfld.o `test -f 'print_avsfld.cc' || echo './'`print_avsfld.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-writePDBQT.o `test -f 'writePDBQT.cc' || echo './'`writePDBQT.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-print_rem.o `test -f 'print_rem.cc' || echo './'`print_rem.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-printdate.o `test -f 'printdate.cc' || echo './'`printdate.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from writePDBQT.h:34,
                 from writePDBQT.cc:35:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-printEnergies.o `test -f 'printEnergies.cc' || echo './'`printEnergies.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-printhms.o `test -f 'printhms.cc' || echo './'`printhms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-prClusterHist.o `test -f 'prClusterHist.cc' || echo './'`prClusterHist.cc
prClusterHist.cc: In function 'void prClusterHist(int, int, const Real&, const int*, const int (*)[2000], const Real*, const Real (*)[2000], const Real*, int, FILE*)':
prClusterHist.cc:51:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   51 |     register int  Rank=0,
      |                   ^~~~
prClusterHist.cc:52:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   52 |                   j=0;
      |                   ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-prInitialState.o `test -f 'prInitialState.cc' || echo './'`prInitialState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-prTorConList.o `test -f 'prTorConList.cc' || echo './'`prTorConList.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from writePDBQT.h:34,
                 from prInitialState.cc:36:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
prInitialState.cc: In function 'void prInitialState(const EnergyBreakdown*, int, int, const Real (*)[3], const char (*)[128], const int*, EnergyComponent*, const Real*, int, Boole, Unbound_Model, int, FILE*)':
prInitialState.cc:59:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   59 |     register int i = 0;
      |                  ^
prTorConList.cc: In function 'void prTorConList(int, const Boole*, const short unsigned int (*)[256], Real (*)[8][2], int*, int, FILE*)':
prTorConList.cc:64:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   64 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-pso.o `test -f 'pso.cc' || echo './'`pso.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-qmultiply.o `test -f 'qmultiply.cc' || echo './'`qmultiply.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from pso.h:4,
                 from pso.cc:1:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
In file included from qmultiply.cc:35:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
qmultiply.cc:42:44: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   42 |                 register const Quat *const ql,   //left
      |                                            ^~
qmultiply.cc:43:44: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   43 |                 register const Quat *const qr )  //right
      |                                            ^~
qmultiply.cc: In function 'void qmultiply(Quat*, const Quat*, const Quat*)':
qmultiply.cc:66:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                     ^
qmultiply.cc:66:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                       ^
qmultiply.cc:66:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                         ^
qmultiply.cc:66:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                           ^
qmultiply.cc: In function 'AxisAngle QuatToAxisAngle(const Quat&)':
qmultiply.cc:224:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  224 |         register double angle = 2. * acos( input.w );
      |                         ^~~~~
qmultiply.cc: In function 'Quat inverse(const Quat&)':
qmultiply.cc:356:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  356 |     register Quat conj, inv;
      |                   ^~~~
qmultiply.cc:356:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  356 |     register Quat conj, inv;
      |                         ^~~
qmultiply.cc:357:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  357 |     register double inv_squared_magnitude;
      |                     ^~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-qtransform.o `test -f 'qtransform.cc' || echo './'`qtransform.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-quicksort.o `test -f 'quicksort.cc' || echo './'`quicksort.cc
In file included from qtransform.h:35,
                 from qtransform.cc:32:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
qtransform.cc: In function 'void qtransform(const Coord&, const Quat&, Real (*)[3], int)':
qtransform.cc:65:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   65 |     register int a;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-ranlib.o `test -f 'ranlib.cc' || echo './'`ranlib.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-rep.o `test -f 'rep.cc' || echo './'`rep.cc
rep.cc: In constructor 'IntVector::IntVector(int)':
rep.cc:77:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   77 |    register int i;
      |                 ^
rep.cc: In constructor 'IntVector::IntVector(int, int, int)':
rep.cc:95:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   95 |    register int i;
      |                 ^
rep.cc: In copy constructor 'IntVector::IntVector(const IntVector&)':
rep.cc:129:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  129 |    for (register unsigned int i=0; i<number_of_pts; i++) {
      |                               ^
rep.cc: In member function 'virtual Representation& IntVector::operator=(const Representation&)':
rep.cc:237:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  237 |    register unsigned int i;
      |                          ^
rep.cc: In constructor 'RealVector::RealVector(int, const double&, const double&, const double&)':
rep.cc:329:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  329 |    register int i=0;
      |                 ^
rep.cc: In copy constructor 'RealVector::RealVector(const RealVector&)':
rep.cc:428:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  428 |    for (register unsigned int i=0; i<original.number_of_pts; i++) {
      |                               ^
rep.cc: In member function 'virtual Representation& RealVector::operator=(const Representation&)':
rep.cc:553:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  553 |    register unsigned int i;
      |                          ^
rep.cc: In copy constructor 'ConstrainedRealVector::ConstrainedRealVector(const ConstrainedRealVector&)':
rep.cc:641:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  641 |    for (register unsigned int i=0; i<original.number_of_pts; i++) {
      |                               ^
rep.cc: In member function 'void ConstrainedRealVector::normalize()':
rep.cc:753:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  753 |       register unsigned int i;
      |                             ^
rep.cc:754:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  754 |       register double tempsum = 0.0, hypotenuse;
      |                       ^~~~~~~
rep.cc:754:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  754 |       register double tempsum = 0.0, hypotenuse;
      |                                      ^~~~~~~~~~
rep.cc: In member function 'virtual Representation& ConstrainedRealVector::operator=(const Representation&)':
rep.cc:812:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  812 |    register unsigned int i;
      |                          ^
rep.cc: In copy constructor 'BitVector::BitVector(const BitVector&)':
rep.cc:900:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  900 |    for (register unsigned int i=0; i<number_of_pts; i++) {
      |                               ^
rep.cc: In member function 'virtual Representation& BitVector::operator=(const Representation&)':
rep.cc:994:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  994 |    register unsigned int i;
      |                          ^
In function 'IMIN(long, long)',
    inlined from 'ignpoi(double const&)' at ranlib.cc:1144:27:
ranlib.cc:54:67: warning: 'm' may be used uninitialized [-Wmaybe-uninitialized]
   54 | inline long IMIN(const long a, const long b) { return ((a) <= (b) ? (a) : (b)) ; }
      |                                                       ~~~~~~~~~~~~^~~~~~~~~~~~
ranlib.cc: In function 'ignpoi(double const&)':
ranlib.cc:995:33: note: 'm' was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |                                 ^
ranlib.cc:1136:5: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized]
 1136 |     if(u <= p0) return ignpoi;
      |     ^~
ranlib.cc:996:58: note: 'p' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                          ^
ranlib.cc:1023:5: warning: 'l' may be used uninitialized [-Wmaybe-uninitialized]
 1023 |     if(ignpoi >= l) return ignpoi;
      |     ^~
ranlib.cc:995:31: note: 'l' was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |                               ^
ranlib.cc:1030:9: warning: 'd' may be used uninitialized [-Wmaybe-uninitialized]
 1030 |     if(d*u >= difmuk*difmuk*difmuk) return ignpoi;
      |        ~^~
ranlib.cc:996:26: note: 'd' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                          ^
ranlib.cc:1017:13: warning: 's' may be used uninitialized [-Wmaybe-uninitialized]
 1017 |     g = mu+s*snorm();
      |            ~^~~~~~~~
ranlib.cc:996:71: note: 's' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                                       ^
ranlib.cc:1092:5: warning: 'ignpoi' may be used uninitialized [-Wmaybe-uninitialized]
 1092 |     if(ignpoi >= 10) goto S80;
      |     ^~
ranlib.cc:995:14: note: 'ignpoi' was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |              ^~~~~~
ranlib.cc:1104:7: warning: 'difmuk' may be used uninitialized [-Wmaybe-uninitialized]
 1104 |     v = difmuk/fk;
      |     ~~^~~~~~~~~~~
ranlib.cc:996:32: note: 'difmuk' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                ^~~~~~
ranlib.cc:1102:9: warning: 'fk' may be used uninitialized [-Wmaybe-uninitialized]
 1102 |     del = 8.333333E-2/fk;
      |     ~~~~^~~~~~~~~~~~~~~~
ranlib.cc:996:41: note: 'fk' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                         ^~
ranlib.cc:1116:38: warning: 'c0' may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                ~~~~~~~~~~~~~~~~~~~~~~^~~~
ranlib.cc:996:14: note: 'c0' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |              ^~
ranlib.cc:1116:31: warning: 'c1' may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                 ~~~~~~~~~~~~~~^~~~
ranlib.cc:996:17: note: 'c1' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                 ^~
ranlib.cc:1116:24: warning: 'c2' may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                  ~~~~~~^~~~
ranlib.cc:996:20: note: 'c2' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                    ^~
ranlib.cc:1116:21: warning: 'c3' may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                   ~~^~~
ranlib.cc:996:23: note: 'c3' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                       ^~
ranlib.cc:1116:8: warning: 'omega' may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |     ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ranlib.cc:996:52: note: 'omega' was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                    ^~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-scauchy.o `test -f 'scauchy.cc' || echo './'`scauchy.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-setflags.o `test -f 'setflags.cc' || echo './'`setflags.cc
scauchy.cc: In function 'Real scauchy2()':
scauchy.cc:81:15: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |               ^
scauchy.cc:81:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                  ^
scauchy.cc:81:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                     ^~
scauchy.cc:81:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                         ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-simanneal.o `test -f 'simanneal.cc' || echo './'`simanneal.cc
setflags.cc: In function 'setflags(int, char const**, char const*)':
setflags.cc:293:20: warning: '__strncpy_chk' specified bound depends on the length of the source argument [-Wstringop-truncation]
  293 |             strncpy(logFileName, dock_param_fn, strlen(dock_param_fn)-4);
      |                    ^
setflags.cc:293:55: note: length computed here
  293 |             strncpy(logFileName, dock_param_fn, strlen(dock_param_fn)-4);
      |                                                 ~~~~~~^~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-sort_enrg.o `test -f 'sort_enrg.cc' || echo './'`sort_enrg.cc
In file included from getInitialState.h:31,
                 from simanneal.h:33,
                 from simanneal.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
simanneal.cc: In function 'void simanneal(int*, int, int*, GroupEnergy*, int, const Real&, const char (*)[128], Real*, Real*, Real*, Boole, Real (*)[3], Real (*)[3], const char*, EnergyTables*, Real*, Boole, EnergyComponent*, int, int, FourByteLong (*)[2], const clock_t&, MapType*, int, int, NonbondParam*, int, int, State, State*, const Real&, Boole, const Real&, Boole, const char*, const Real*, const Real&, Boole, const Real&, const tms&, const int (*)[2048], const Real&, Boole, const Real&, const char*, int, int, int, const Real&, Boole, const Real&, const int*, Real (*)[3], Boole, Boole, int, int, const Real&, const Real&, Boole, const Real&, Boole, const char*, Boole, short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, const Real (*)[8][2], const int*, Boole, Boole, Boole, const Real&, const Real&, int, int, const int*, Boole, const Real&, const Real&, const ParameterEntry*, const Real&, GridMapSetInfo*, Boole, Boole, const char (*)[256], Unbound_Model, int, FILE*)':
simanneal.cc:188:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  188 |     register int i = 0;
      |                  ^
simanneal.cc:189:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  189 |     register int nacc = 0;
      |                  ^~~~
simanneal.cc:190:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  190 |     register int nAcc = 0;
      |                  ^~~~
simanneal.cc:191:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  191 |     register int nAccProb = 0;
      |                  ^~~~~~~~
simanneal.cc:192:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  192 |     register int nedge = 0;
      |                  ^~~~~
simanneal.cc:193:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  193 |     register int nrej = 0;
      |                  ^~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-stack.o `test -f 'stack.cc' || echo './'`stack.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-stop.o `test -f 'stop.cc' || echo './'`stop.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-strindex.o `test -f 'strindex.cc' || echo './'`strindex.cc
strindex.cc: In function 'int strindex(const char*, const char*)':
strindex.cc:54:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                  ^
strindex.cc:54:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                    ^~
strindex.cc:54:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                       ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-success.o `test -f 'success.cc' || echo './'`success.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-support.o `test -f 'support.cc' || echo './'`support.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-swap.o `test -f 'swap.cc' || echo './'`swap.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-threadlog.o `test -f 'threadlog.cc' || echo './'`threadlog.cc
In file included from eval.h:38,
                 from support.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)':
eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
support.cc: In copy constructor 'Population::Population(const Population&)':
support.cc:52:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   52 |    register int i;
      |                 ^
support.cc: In member function 'void Population::msort(int)':
support.cc:147:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  147 |    register int i;
      |                 ^
support.cc: In member function 'void Population::print(FILE*, int) const':
support.cc:187:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  187 |    register int i;
      |                 ^
support.cc: In member function 'void Population::printPopulationAsStates(FILE*, int, int) const':
support.cc:348:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  348 |    register int i;
      |                 ^
support.cc: In member function 'void Population::printPopulationAsCoordsEnergies(FILE*, int, int) const':
support.cc:388:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  388 |    register int i;
      |                 ^
support.cc: In member function 'void Population::set_eob(int*)':
support.cc:433:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  433 |    for (register int i=0; i<MAX_TORS; i++) {
      |                      ^
support.cc: In constructor 'Genotype::Genotype(unsigned int, Representation**)':
support.cc:456:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                          ^
support.cc:456:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                             ^
support.cc:456:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                                ^
support.cc: In copy constructor 'Genotype::Genotype(const Genotype&)':
support.cc:484:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  484 |    register unsigned int i;
      |                          ^
support.cc: In destructor 'Genotype::~Genotype()':
support.cc:512:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  512 |    register unsigned int i;
      |                          ^
support.cc: In constructor 'Phenotype::Phenotype(unsigned int, Representation**, Eval*)':
support.cc:674:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                          ^
support.cc:674:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                             ^
support.cc:674:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                                ^
support.cc: In copy constructor 'Phenotype::Phenotype(const Phenotype&)':
support.cc:700:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  700 |    register unsigned int i;
      |                          ^
support.cc: In member function 'Phenotype& Phenotype::operator=(const Phenotype&)':
support.cc:731:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  731 |    register unsigned int i;
      |                          ^
support.cc: In destructor 'Phenotype::~Phenotype()':
support.cc:781:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  781 |    register unsigned int i;
      |                          ^
support.cc: In member function 'Population& Population::operator=(const Population&)':
support.cc:968:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  968 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-timesys.o `test -f 'timesys.cc' || echo './'`timesys.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-timesyshms.o `test -f 'timesyshms.cc' || echo './'`timesyshms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-torNorVec.o `test -f 'torNorVec.cc' || echo './'`torNorVec.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-torsion.o `test -f 'torsion.cc' || echo './'`torsion.cc
torNorVec.cc: In function 'void torNorVec(const Real (*)[3], int, const int (*)[2048], Real (*)[3], int, FILE*)':
torNorVec.cc:47:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   47 |     register int xyz = 0;
      |                  ^~~
torNorVec.cc:48:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   48 |     register int j = 0;
      |                  ^
torNorVec.cc: In function 'void update_torsion_vectors(const Real (*)[3], int, const int (*)[2048], Real (*)[3], Molecule*, int, int, FILE*)':
torNorVec.cc:104:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  104 |     register int i=0, j=0;
      |                  ^
torNorVec.cc:104:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  104 |     register int i=0, j=0;
      |                       ^
torsion.cc: In function 'void torsion(const State&, Real (*)[3], const Real (*)[3], const int (*)[2048], int)':
torsion.cc:62:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   62 |     register double crdtemp[SPACE];
      |                     ^~~~~~~
torsion.cc:63:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   63 |     register double  d[SPACE];
      |                      ^
torsion.cc:64:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   64 |     register double sv[SPACE];
      |                     ^~
torsion.cc:65:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   65 |     register double ov[SPACE];
      |                     ^~
torsion.cc:66:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   66 |     register double  k[SPACE][SPACE];
      |                      ^
torsion.cc:67:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                     ^
torsion.cc:67:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                        ^
torsion.cc:67:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                           ^
torsion.cc:67:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                              ^~~
torsion.cc:67:35: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                                   ^~~~~~~~
torsion.cc:68:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                  ^
torsion.cc:68:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                     ^
torsion.cc:68:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                        ^~~~~
torsion.cc:68:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                               ^~~~~~
torsion.cc:68:39: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                                       ^~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-trilinterp.o `test -f 'trilinterp.cc' || echo './'`trilinterp.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-usage.o `test -f 'usage.cc' || echo './'`usage.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-weedbonds.o `test -f 'weedbonds.cc' || echo './'`weedbonds.cc
trilinterp.cc: In function 'Real trilinterp(int, int, const Real (*)[3], const Real*, const Real*, const int*, MapType*, const GridMapSetInfo*, const int*, EnergyComponent*, EnergyComponent*, EnergyComponent*)':
trilinterp.cc:88:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   88 |     register int i;               /* i-th atom */
      |                  ^
trilinterp.cc:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                         ^
trilinterp.cc:92:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                            ^
trilinterp.cc:92:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                               ^
trilinterp.cc:93:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                         ^
trilinterp.cc:93:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                              ^
trilinterp.cc:93:35: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                                   ^
trilinterp.cc:96:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   96 |         register int AtomType;        /* atom type */
      |                      ^~~~~~~~
trilinterp.cc:97:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                      ^~
trilinterp.cc:97:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                           ^~
trilinterp.cc:97:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                                ^~
trilinterp.cc:98:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                      ^~
trilinterp.cc:98:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                           ^~
trilinterp.cc:98:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                                ^~
trilinterp.cc:99:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                         ^
trilinterp.cc:99:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                           ^
trilinterp.cc:99:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                             ^
trilinterp.cc:98:22: warning: variable 'u1' set but not used [-Wunused-but-set-variable]
   98 |         register int u1,  v1,  w1;
      |                      ^~
trilinterp.cc:98:27: warning: variable 'v1' set but not used [-Wunused-but-set-variable]
   98 |         register int u1,  v1,  w1;
      |                           ^~
trilinterp.cc:98:32: warning: variable 'w1' set but not used [-Wunused-but-set-variable]
   98 |         register int u1,  v1,  w1;
      |                                ^~
weedbonds.cc: In function 'void weedbonds(int, const char (*)[5], const int*, int, const int (*)[2048], int (*)[2048], int*, NonbondParam*, int*, int, const int*, int, int, FILE*)':
weedbonds.cc:65:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   65 |     register int i = 0;
      |                  ^
weedbonds.cc:66:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   66 |     register int j = 0;
      |                  ^
weedbonds.cc:67:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   67 |     register int k = 0;
      |                  ^
weedbonds.cc: In function 'void print_nonbonds(int, const char (*)[5], const int*, int, const int (*)[2048], int (*)[2048], int, const NonbondParam*, const int*, int, FILE*)':
weedbonds.cc:252:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  252 |     register int i = 0;
      |                  ^
weedbonds.cc:253:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  253 |     register int j = 0;
      |                  ^
weedbonds.cc:254:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  254 |     register int k = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-warn_bad_file.o `test -f 'warn_bad_file.cc' || echo './'`warn_bad_file.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-coliny.o `test -f 'coliny.cc' || echo './'`coliny.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-eintcal.o `test -f 'eintcal.cc' || echo './'`eintcal.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-eintcalPrint.o `test -f 'eintcalPrint.cc' || echo './'`eintcalPrint.cc
eintcal.cc: In function 'Real eintcal(const NonbondParam*, const EnergyTables*, const Real (*)[3], int, int*, GroupEnergy*, Boole, Boole, const Real&, const Real*, Boole, Boole, int, FILE*)':
eintcal.cc:206:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  206 |             register double r2;
      |                             ^~
In file included from eintcalPrint.cc:29:
./eintcal.cc: In function 'Real eintcalPrint(const NonbondParam*, const EnergyTables*, const Real (*)[3], int, int*, GroupEnergy*, Boole, Boole, const Real&, const Real*, Boole, Boole, int, const int*, const char (*)[3], int, FILE*)':
./eintcal.cc:206:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  206 |             register double r2;
      |                             ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-intnbtable.o `test -f 'intnbtable.cc' || echo './'`intnbtable.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autodock4_omp-nbe.o `test -f 'nbe.cc' || echo './'`nbe.cc
intnbtable.cc: In function 'void intnbtable(Boole*, int, int, const GridMapSetInfo*, const Real&, const Real&, int, int, Boole, const Real&, Linear_FE_Model, const double&, EnergyTables*, Boole, FILE*, int)':
intnbtable.cc:83:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   83 |     register int i;
      |                  ^
intnbtable.cc: In function 'void setup_distdepdiel(FILE*, int, EnergyTables*)':
intnbtable.cc:268:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  268 |     register int i=0;
      |                  ^
intnbtable.cc:269:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  269 |     register double distance=0.0L;
      |                     ^~~~~~~~
nbe.cc: In function 'void nbe(const GridMapSetInfo*, const EnergyTables*, int, int, FILE*)':
nbe.cc:64:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   64 |     register int i = 0;
      |                  ^
nbe.cc:65:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   65 |     register int j = 0;
      |                  ^
nbe.cc:66:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
   66 |     register int k = 0;
      |                  ^
g++ -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection   -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o autodock4 autodock4-main.o autodock4-alea.o autodock4-analysis.o autodock4-atom_parameter_manager.o autodock4-banner.o autodock4-bestpdb.o autodock4-calculateEnergies.o autodock4-call_glss.o autodock4-call_ls.o autodock4-center_ligand.o autodock4-changeState.o autodock4-check_header_float.o autodock4-check_header_int.o autodock4-check_header_line.o autodock4-cluster_analysis.o autodock4-clmode.o autodock4-cnv_state_to_coords.o autodock4-com.o autodock4-conformation_sampler.o autodock4-dimLibrary.o autodock4-distdepdiel.o autodock4-stateLibrary.o autodock4-readfield.o autodock4-readmap.o autodock4-readPDBQT.o autodock4-read_parameter_library.o autodock4-eval.o autodock4-gencau.o autodock4-getrms.o autodock4-get_atom_type.o autodock4-getInitialState.o autodock4-getpdbcrds.o autodock4-gs.o autodock4-initautodock.o autodock4-input_state.o autodock4-investigate.o autodock4-linpack.o autodock4-ls.o autodock4-mapping.o autodock4-mingw_getrusage.o autodock4-minmeanmax.o autodock4-mkNewState.o autodock4-mkTorTree.o autodock4-mkRandomState.o autodock4-nonbonds.o autodock4-openfile.o autodock4-output_state.o autodock4-parse_dpf_line.o autodock4-parse_param_line.o autodock4-parse_PDBQT_line.o autodock4-parse_trj_line.o autodock4-parsetypes.o autodock4-print_2x.o autodock4-print_atomic_energies.o autodock4-print_avsfld.o autodock4-writePDBQT.o autodock4-print_rem.o autodock4-printdate.o autodock4-printEnergies.o autodock4-printhms.o autodock4-prClusterHist.o autodock4-prInitialState.o autodock4-prTorConList.o autodock4-pso.o autodock4-qmultiply.o autodock4-qtransform.o autodock4-quicksort.o autodock4-ranlib.o autodock4-rep.o autodock4-scauchy.o autodock4-setflags.o autodock4-simanneal.o autodock4-sort_enrg.o autodock4-stack.o autodock4-stop.o autodock4-strindex.o autodock4-success.o autodock4-support.o autodock4-swap.o autodock4-threadlog.o autodock4-timesys.o autodock4-timesyshms.o autodock4-torNorVec.o autodock4-torsion.o autodock4-trilinterp.o autodock4-usage.o autodock4-weedbonds.o autodock4-warn_bad_file.o autodock4-coliny.o autodock4-eintcal.o autodock4-eintcalPrint.o autodock4-intnbtable.o autodock4-nbe.o  -lm 
g++ -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -fopenmp  -fopenmp -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o autodock4.omp autodock4_omp-main.o autodock4_omp-alea.o autodock4_omp-analysis.o autodock4_omp-atom_parameter_manager.o autodock4_omp-banner.o autodock4_omp-bestpdb.o autodock4_omp-calculateEnergies.o autodock4_omp-call_glss.o autodock4_omp-call_ls.o autodock4_omp-center_ligand.o autodock4_omp-changeState.o autodock4_omp-check_header_float.o autodock4_omp-check_header_int.o autodock4_omp-check_header_line.o autodock4_omp-cluster_analysis.o autodock4_omp-clmode.o autodock4_omp-cnv_state_to_coords.o autodock4_omp-com.o autodock4_omp-conformation_sampler.o autodock4_omp-dimLibrary.o autodock4_omp-distdepdiel.o autodock4_omp-stateLibrary.o autodock4_omp-readfield.o autodock4_omp-readmap.o autodock4_omp-readPDBQT.o autodock4_omp-read_parameter_library.o autodock4_omp-eval.o autodock4_omp-gencau.o autodock4_omp-getrms.o autodock4_omp-get_atom_type.o autodock4_omp-getInitialState.o autodock4_omp-getpdbcrds.o autodock4_omp-gs.o autodock4_omp-initautodock.o autodock4_omp-input_state.o autodock4_omp-investigate.o autodock4_omp-linpack.o autodock4_omp-ls.o autodock4_omp-mapping.o autodock4_omp-mingw_getrusage.o autodock4_omp-minmeanmax.o autodock4_omp-mkNewState.o autodock4_omp-mkTorTree.o autodock4_omp-mkRandomState.o autodock4_omp-nonbonds.o autodock4_omp-openfile.o autodock4_omp-output_state.o autodock4_omp-parse_dpf_line.o autodock4_omp-parse_param_line.o autodock4_omp-parse_PDBQT_line.o autodock4_omp-parse_trj_line.o autodock4_omp-parsetypes.o autodock4_omp-print_2x.o autodock4_omp-print_atomic_energies.o autodock4_omp-print_avsfld.o autodock4_omp-writePDBQT.o autodock4_omp-print_rem.o autodock4_omp-printdate.o autodock4_omp-printEnergies.o autodock4_omp-printhms.o autodock4_omp-prClusterHist.o autodock4_omp-prInitialState.o autodock4_omp-prTorConList.o autodock4_omp-pso.o autodock4_omp-qmultiply.o autodock4_omp-qtransform.o autodock4_omp-quicksort.o autodock4_omp-ranlib.o autodock4_omp-rep.o autodock4_omp-scauchy.o autodock4_omp-setflags.o autodock4_omp-simanneal.o autodock4_omp-sort_enrg.o autodock4_omp-stack.o autodock4_omp-stop.o autodock4_omp-strindex.o autodock4_omp-success.o autodock4_omp-support.o autodock4_omp-swap.o autodock4_omp-threadlog.o autodock4_omp-timesys.o autodock4_omp-timesyshms.o autodock4_omp-torNorVec.o autodock4_omp-torsion.o autodock4_omp-trilinterp.o autodock4_omp-usage.o autodock4_omp-weedbonds.o autodock4_omp-warn_bad_file.o autodock4_omp-coliny.o autodock4_omp-eintcal.o autodock4_omp-eintcalPrint.o autodock4_omp-intnbtable.o autodock4_omp-nbe.o  -lm 
/usr/bin/ld: /tmp/ccAp9Qsd.ltrans2.ltrans.o: in function `threadLogOpen(int)':
/builddir/build/BUILD/src/autodock/threadlog.cc:48: warning: the use of `tempnam' is dangerous, better use `mkstemp'
make[1]: Leaving directory '/builddir/build/BUILD/src/autodock'
+ popd
~/build/BUILD/src
~/build/BUILD/src/autogrid ~/build/BUILD/src
+ pushd /builddir/build/BUILD/src/autogrid
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2014-07-19 01:59:01.000000000 +0000
+++ ./configure	2022-12-23 10:02:42.598791063 +0000
@@ -1868,7 +1868,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config.sub
++ basename ./config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config.guess
++ basename ./config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
+ ./configure --build=i686-redhat-linux-gnu --host=i686-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... none
checking build system type... i686-redhat-linux-gnu
checking host system type... i686-redhat-linux-gnu
checking for i686-redhat-linux-gnu-gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... none
checking for sqrt in -lm... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for an ANSI C-conforming const... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for gethostname... yes
checking for getpid... yes
checking for GetProcessId... no
checking for fchmod... yes
checking for setlinebuf... yes
checking for sysconf... yes
checking for times... yes
checking for getrusage... yes
checking for pow... yes
checking for sqrt... yes
checking for strncasecmp... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
+ make V=1 -j2
rm -f default_parameters.h
csh ./../autodock/paramdat2h.csh ./../autodock/AD4_parameters.dat  ./../autodock/AD4.1_bound.dat > default_parameters.h
egrep: warning: egrep is obsolescent; using grep -E
egrep: warning: egrep is obsolescent; using grep -E
sh ./copyfilesfromAD
make  all-am
make[1]: Entering directory '/builddir/build/BUILD/src/autogrid'
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-main.o `test -f 'main.cpp' || echo './'`main.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-check_size.o `test -f 'check_size.cpp' || echo './'`check_size.cpp
main.cpp: In function 'int main(int, char**)':
main.cpp:427:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |              ^
main.cpp:427:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                     ^~
main.cpp:427:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                             ^
main.cpp:427:36: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                                    ^
main.cpp:427:43: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                                           ^~~~~~
main.cpp:427:55: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                                                       ^~~~~~~~
main.cpp:428:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |              ^~
main.cpp:428:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                      ^~
main.cpp:428:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                              ^~
main.cpp:428:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                      ^~~~~~~~~
main.cpp:428:54: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                                      ^~~
main.cpp:428:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                                               ^~
main.cpp:428:71: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                                                       ^~
main.cpp:428:79: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                                                               ^~
main.cpp:429:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  429 | register int closestH = 0;
      |              ^~~~~~~~
main.cpp:214:5: warning: variable 'parameter_library_found' set but not used [-Wunused-but-set-variable]
  214 | int parameter_library_found = 0;
      |     ^~~~~~~~~~~~~~~~~~~~~~~
main.cpp:263:8: warning: variable 'maptypeptr' set but not used [-Wunused-but-set-variable]
  263 | char * maptypeptr; /*ptr for current map->type*/
      |        ^~~~~~~~~~
main.cpp:301:44: warning: variable 'nitrogen' set but not used [-Wunused-but-set-variable]
  301 | int hydrogen, carbon, arom_carbon, oxygen, nitrogen;
      |                                            ^~~~~~~~
main.cpp:302:21: warning: variable 'nonHB_nitrogen' set but not used [-Wunused-but-set-variable]
  302 | int nonHB_hydrogen, nonHB_nitrogen, sulphur, nonHB_sulphur;
      |                     ^~~~~~~~~~~~~~
main.cpp:302:46: warning: variable 'nonHB_sulphur' set but not used [-Wunused-but-set-variable]
  302 | int nonHB_hydrogen, nonHB_nitrogen, sulphur, nonHB_sulphur;
      |                                              ^~~~~~~~~~~~~
main.cpp:305:5: warning: variable 'chlorine' set but not used [-Wunused-but-set-variable]
  305 | int chlorine, bromine, fluorine, iodine;
      |     ^~~~~~~~
main.cpp:305:15: warning: variable 'bromine' set but not used [-Wunused-but-set-variable]
  305 | int chlorine, bromine, fluorine, iodine;
      |               ^~~~~~~
main.cpp:305:24: warning: variable 'fluorine' set but not used [-Wunused-but-set-variable]
  305 | int chlorine, bromine, fluorine, iodine;
      |                        ^~~~~~~~
main.cpp:305:34: warning: variable 'iodine' set but not used [-Wunused-but-set-variable]
  305 | int chlorine, bromine, fluorine, iodine;
      |                                  ^~~~~~
main.cpp:307:5: warning: variable 'map_hydrogen' set but not used [-Wunused-but-set-variable]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |     ^~~~~~~~~~~~
main.cpp:307:19: warning: variable 'map_carbon' set but not used [-Wunused-but-set-variable]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |                   ^~~~~~~~~~
main.cpp:307:31: warning: variable 'map_arom_carbon' set but not used [-Wunused-but-set-variable]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |                               ^~~~~~~~~~~~~~~
main.cpp:307:48: warning: variable 'map_oxygen' set but not used [-Wunused-but-set-variable]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |                                                ^~~~~~~~~~
main.cpp:307:60: warning: variable 'map_nitrogen' set but not used [-Wunused-but-set-variable]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |                                                            ^~~~~~~~~~~~
main.cpp:308:5: warning: variable 'map_nonHB_hydrogen' set but not used [-Wunused-but-set-variable]
  308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur;
      |     ^~~~~~~~~~~~~~~~~~
main.cpp:308:25: warning: variable 'map_nonHB_nitrogen' set but not used [-Wunused-but-set-variable]
  308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur;
      |                         ^~~~~~~~~~~~~~~~~~
main.cpp:308:45: warning: variable 'map_sulphur' set but not used [-Wunused-but-set-variable]
  308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur;
      |                                             ^~~~~~~~~~~
main.cpp:308:58: warning: variable 'map_nonHB_sulphur' set but not used [-Wunused-but-set-variable]
  308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur;
      |                                                          ^~~~~~~~~~~~~~~~~
main.cpp:309:5: warning: variable 'map_chlorine' set but not used [-Wunused-but-set-variable]
  309 | int map_chlorine, map_bromine, map_fluorine, map_iodine;
      |     ^~~~~~~~~~~~
main.cpp:309:19: warning: variable 'map_bromine' set but not used [-Wunused-but-set-variable]
  309 | int map_chlorine, map_bromine, map_fluorine, map_iodine;
      |                   ^~~~~~~~~~~
main.cpp:309:32: warning: variable 'map_fluorine' set but not used [-Wunused-but-set-variable]
  309 | int map_chlorine, map_bromine, map_fluorine, map_iodine;
      |                                ^~~~~~~~~~~~
main.cpp:309:46: warning: variable 'map_iodine' set but not used [-Wunused-but-set-variable]
  309 | int map_chlorine, map_bromine, map_fluorine, map_iodine;
      |                                              ^~~~~~~~~~
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-setflags.o `test -f 'setflags.cpp' || echo './'`setflags.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-timesys.o `test -f 'timesys.cpp' || echo './'`timesys.cpp
main.cpp:1040:306: warning: ' grid points); 
 or try runn...' directive writing 83 bytes into a region of size between 0 and 39 [-Wformat-overflow=]
 1040 |                 (void) sprintf( message, "There will not be enough memory to store these grid maps in AutoDock; \ntry reducing the number of ligand atom types (you have %d including electrostatics) \nor reducing the size of the grid maps (you asked for %d x %d x %d grid points); \n or try running AutoDock on a machine with more RAM than this one.\n", num_maps, n1[X], n1[Y], n1[Z] );
      |                                                                                                                                                                                                                                                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:906,
                 from main.cpp:40:
In function 'sprintf',
    inlined from 'main' at main.cpp:1040:31:
/usr/include/bits/stdio2.h:30:34: note: '__sprintf_chk' output between 301 and 341 bytes into a destination of size 256
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
main.cpp: In function 'main':
main.cpp:1446:46: warning: 'cA' may be used uninitialized [-Wmaybe-uninitialized]
 1446 |                 gridmap[ligtype].cA[rectype] = cA;
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
main.cpp:388:8: note: 'cA' was declared here
  388 | double cA, cB, tmpconst;
      |        ^~
main.cpp:1447:46: warning: 'cB' may be used uninitialized [-Wmaybe-uninitialized]
 1447 |                 gridmap[ligtype].cB[rectype] = cB;
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
main.cpp:388:12: note: 'cB' was declared here
  388 | double cA, cB, tmpconst;
      |            ^~
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-timesyshms.o `test -f 'timesyshms.cpp' || echo './'`timesyshms.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-printhms.o `test -f 'printhms.cpp' || echo './'`printhms.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-prHMSfixed.o `test -f 'prHMSfixed.cpp' || echo './'`prHMSfixed.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-printdate.o `test -f 'printdate.cpp' || echo './'`printdate.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-strindex.o `test -f 'strindex.cpp' || echo './'`strindex.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-banner.o `test -f 'banner.cpp' || echo './'`banner.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-gpfparser.o `test -f 'gpfparser.cpp' || echo './'`gpfparser.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-parsetypes.o `test -f 'parsetypes.cpp' || echo './'`parsetypes.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-atom_parameter_manager.o `test -f 'atom_parameter_manager.cpp' || echo './'`atom_parameter_manager.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-read_parameter_library.o `test -f 'read_parameter_library.cpp' || echo './'`read_parameter_library.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-parse_param_line.o `test -f 'parse_param_line.cpp' || echo './'`parse_param_line.cpp
read_parameter_library.cpp: In function 'void setup_parameter_library(FILE*, int, const char*, Unbound_Model, Linear_FE_Model*)':
read_parameter_library.cpp:207:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
  207 |     register int counter = 0;
      |                  ^~~~~~~
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-distdepdiel.o `test -f 'distdepdiel.cpp' || echo './'`distdepdiel.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-mingw_getrusage.o `test -f 'mingw_getrusage.cpp' || echo './'`mingw_getrusage.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-calc_vina_potential.o `test -f 'calc_vina_potential.cpp' || echo './'`calc_vina_potential.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o autogrid4-stop.o `test -f 'stop.cpp' || echo './'`stop.cpp
calc_vina_potential.cpp: In function 'int calc_vina_potential(int, const char (*)[3], int, const char (*)[3], EnergyTables*)':
calc_vina_potential.cpp:110:9: warning: variable 'hydrogen' set but not used [-Wunused-but-set-variable]
  110 |     int hydrogen=-1;
      |         ^~~~~~~~
calc_vina_potential.cpp:113:9: warning: variable 'oxygen' set but not used [-Wunused-but-set-variable]
  113 |     int oxygen=-1;
      |         ^~~~~~
calc_vina_potential.cpp:114:9: warning: variable 'nitrogen' set but not used [-Wunused-but-set-variable]
  114 |     int nitrogen=-1;
      |         ^~~~~~~~
calc_vina_potential.cpp:115:9: warning: variable 'fluorine' set but not used [-Wunused-but-set-variable]
  115 |     int fluorine=-1;
      |         ^~~~~~~~
calc_vina_potential.cpp:116:9: warning: variable 'chlorine' set but not used [-Wunused-but-set-variable]
  116 |     int chlorine=-1;
      |         ^~~~~~~~
calc_vina_potential.cpp:117:9: warning: variable 'bromine' set but not used [-Wunused-but-set-variable]
  117 |     int bromine=-1;
      |         ^~~~~~~
calc_vina_potential.cpp:118:9: warning: variable 'iodine' set but not used [-Wunused-but-set-variable]
  118 |     int iodine=-1;
      |         ^~~~~~
calc_vina_potential.cpp:283:56: warning: array subscript 16384 is above array bounds of 'Real[14][14]' [-Warray-bounds=]
  283 |      printf("last value=%f\n", p_et->e_vdW_Hb[i][indx_r][ia]);
      |                                ~~~~~~~~~~~~~~~~~~~~~~~~^
In file included from atom_parameter_manager.h:30,
                 from calc_vina_potential.cpp:26:
./../autodock/structs.h:260:10: note: while referencing 'e_vdW_Hb'
  260 |     Real e_vdW_Hb[NEINT][MAX_ATOM_TYPES][MAX_ATOM_TYPES];  // vdW & Hb energies
      |          ^~~~~~~~
In file included from /usr/include/stdio.h:906,
                 from ./../autodock/autocomm.h:35,
                 from autogrid.h:27,
                 from calc_vina_potential.cpp:25:
In function 'printf',
    inlined from 'calc_vina_potential(int, char const (*) [3], int, char const (*) [3], energy_tables*)' at calc_vina_potential.cpp:284:12:
/usr/include/bits/stdio2.h:86:23: warning: 'rddist' may be used uninitialized [-Wmaybe-uninitialized]
   86 |   return __printf_chk (__USE_FORTIFY_LEVEL - 1, __fmt, __va_arg_pack ());
      |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
calc_vina_potential.cpp: In function 'calc_vina_potential(int, char const (*) [3], int, char const (*) [3], energy_tables*)':
calc_vina_potential.cpp:57:12: note: 'rddist' was declared here
   57 |     double rddist;
      |            ^~~~~~
calc_vina_potential.cpp:283:12: warning: 'i' may be used uninitialized [-Wmaybe-uninitialized]
  283 |      printf("last value=%f\n", p_et->e_vdW_Hb[i][indx_r][ia]);
      |      ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
calc_vina_potential.cpp:60:13: note: 'i' was declared here
   60 |     int ia, i,   indx_r;
      |             ^
g++  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o autogrid4 autogrid4-main.o autogrid4-check_size.o autogrid4-setflags.o autogrid4-timesys.o autogrid4-timesyshms.o autogrid4-printhms.o autogrid4-prHMSfixed.o autogrid4-printdate.o autogrid4-strindex.o autogrid4-banner.o autogrid4-gpfparser.o autogrid4-parsetypes.o autogrid4-atom_parameter_manager.o autogrid4-read_parameter_library.o autogrid4-parse_param_line.o autogrid4-distdepdiel.o autogrid4-mingw_getrusage.o autogrid4-calc_vina_potential.o autogrid4-stop.o  -lm 
make[1]: Leaving directory '/builddir/build/BUILD/src/autogrid'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.0uQ44K
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/autodocksuite-4.2.6-17.fc38.i386 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/autodocksuite-4.2.6-17.fc38.i386
++ dirname /builddir/build/BUILDROOT/autodocksuite-4.2.6-17.fc38.i386
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/autodocksuite-4.2.6-17.fc38.i386
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd src
+ make -C autodock install DESTDIR=/builddir/build/BUILDROOT/autodocksuite-4.2.6-17.fc38.i386
make: Entering directory '/builddir/build/BUILD/src/autodock'
make  install-am
make[1]: Entering directory '/builddir/build/BUILD/src/autodock'
make[2]: Entering directory '/builddir/build/BUILD/src/autodock'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/autodocksuite-4.2.6-17.fc38.i386/usr/bin'
  /usr/bin/install -c autodock4 autodock4.omp '/builddir/build/BUILDROOT/autodocksuite-4.2.6-17.fc38.i386/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/src/autodock'
make[1]: Leaving directory '/builddir/build/BUILD/src/autodock'
make: Leaving directory '/builddir/build/BUILD/src/autodock'
+ make -C autogrid install DESTDIR=/builddir/build/BUILDROOT/autodocksuite-4.2.6-17.fc38.i386
make: Entering directory '/builddir/build/BUILD/src/autogrid'
make  install-am
make[1]: Entering directory '/builddir/build/BUILD/src/autogrid'
make[2]: Entering directory '/builddir/build/BUILD/src/autogrid'
 /usr/bin/mkdir -p '/builddir/build/BUILDROOT/autodocksuite-4.2.6-17.fc38.i386/usr/bin'
  /usr/bin/install -c autogrid4 '/builddir/build/BUILDROOT/autodocksuite-4.2.6-17.fc38.i386/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/src/autogrid'
make[1]: Leaving directory '/builddir/build/BUILD/src/autogrid'
make: Leaving directory '/builddir/build/BUILD/src/autogrid'
+ rm -f /builddir/build/BUILDROOT/autodocksuite-4.2.6-17.fc38.i386//usr/bin/autodock4.omp
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 4.2.6-17.fc38 --unique-debug-suffix -4.2.6-17.fc38.i386 --unique-debug-src-base autodocksuite-4.2.6-17.fc38.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/src
extracting debug info from /builddir/build/BUILDROOT/autodocksuite-4.2.6-17.fc38.i386/usr/bin/autodock4
extracting debug info from /builddir/build/BUILDROOT/autodocksuite-4.2.6-17.fc38.i386/usr/bin/autogrid4
original debug info size: 2416kB, size after compression: 1488kB
/usr/bin/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
3034 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: autodocksuite-4.2.6-17.fc38.i686
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.1Zt3Qf
+ umask 022
+ cd /builddir/build/BUILD
+ cd src
+ LICENSEDIR=/builddir/build/BUILDROOT/autodocksuite-4.2.6-17.fc38.i386/usr/share/licenses/autodocksuite
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/autodocksuite-4.2.6-17.fc38.i386/usr/share/licenses/autodocksuite
+ cp -pr autodock/COPYING /builddir/build/BUILDROOT/autodocksuite-4.2.6-17.fc38.i386/usr/share/licenses/autodocksuite
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: autodocksuite = 4.2.6-17.fc38 autodocksuite(x86-32) = 4.2.6-17.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_3.3.1) libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.29) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) rtld(GNU_HASH)
Processing files: autodocksuite-debugsource-4.2.6-17.fc38.i686
Provides: autodocksuite-debugsource = 4.2.6-17.fc38 autodocksuite-debugsource(x86-32) = 4.2.6-17.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: autodocksuite-debuginfo-4.2.6-17.fc38.i686
Provides: autodocksuite-debuginfo = 4.2.6-17.fc38 autodocksuite-debuginfo(x86-32) = 4.2.6-17.fc38 debuginfo(build-id) = a6a1794ffffef75b3b00b33f6bb1e4a5ba1dc02f debuginfo(build-id) = ae14d1c043a426775ffafcf89cef5030b15b5d90
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: autodocksuite-debugsource(x86-32) = 4.2.6-17.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/autodocksuite-4.2.6-17.fc38.i386
Wrote: /builddir/build/RPMS/autodocksuite-debuginfo-4.2.6-17.fc38.i686.rpm
Wrote: /builddir/build/RPMS/autodocksuite-debugsource-4.2.6-17.fc38.i686.rpm
Wrote: /builddir/build/RPMS/autodocksuite-4.2.6-17.fc38.i686.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.vfyRCz
+ umask 022
+ cd /builddir/build/BUILD
+ cd src
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/autodocksuite-4.2.6-17.fc38.i386
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.0T4Vtr
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf src src.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild autodocksuite-4.2.6-17.fc38.src.rpm
Finish: build phase for autodocksuite-4.2.6-17.fc38.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1671789623.523985/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-i686-1671789623.523985/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-i686-1671789623.523985/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/autodocksuite-4.2.6-17.fc38.src.rpm) Config(child) 1 minutes 17 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool