Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c2a2' (ED25519) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5186146 --chroot fedora-rawhide-ppc64le --detached Version: 0.62 PID: 5206 Logging PID: 5207 Task: {'appstream': False, 'background': True, 'build_id': 5186146, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-ppc64le', 'enable_net': False, 'fedora_review': False, 'git_hash': '056da70e5f337d47b3d83e864e61d924863e654a', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/samtools', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'samtools', 'package_version': '1.15.1-1', 'project_dirname': 'gcc-13-test', 'project_name': 'gcc-13-test', 'project_owner': 'jakub', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jakub/gcc-13-test/fedora-rawhide-ppc64le/', 'id': 'copr_base', 'name': 'Copr repository'}, {'baseurl': 'https://jakub.fedorapeople.org/fedora-gcc13-$arch/', 'id': 'https_jakub_fedorapeople_org_fedora_gcc13_arch', 'name': 'Additional repo https_jakub_fedorapeople_org_fedora_gcc13_arch'}], 'sandbox': 'jakub/gcc-13-test--jakub', 'source_json': {}, 'source_type': None, 'submitter': 'jakub', 'tags': [], 'task_id': '5186146-fedora-rawhide-ppc64le', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/samtools /var/lib/copr-rpmbuild/workspace/workdir-j75lkvd0/samtools --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/samtools', '/var/lib/copr-rpmbuild/workspace/workdir-j75lkvd0/samtools', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-j75lkvd0/samtools'... Running: git checkout 056da70e5f337d47b3d83e864e61d924863e654a cmd: ['git', 'checkout', '056da70e5f337d47b3d83e864e61d924863e654a'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-j75lkvd0/samtools rc: 0 stdout: stderr: Note: switching to '056da70e5f337d47b3d83e864e61d924863e654a'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 056da70 automatic import of samtools Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-j75lkvd0/samtools rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading samtools-1.15.1.tar.bz2 INFO: Calling: curl -H Pragma: -o samtools-1.15.1.tar.bz2 --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jakub/gcc-13-test/samtools/samtools-1.15.1.tar.bz2/md5/b71d1aa1de9749773b1a04bf54281ca0/samtools-1.15.1.tar.bz2 % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated 100 7648k 100 7648k 0 0 19.3M 0 --:--:-- --:--:-- --:--:-- 19.3M INFO: Reading stdout from command: md5sum samtools-1.15.1.tar.bz2 Running (timeout=115200): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-j75lkvd0/samtools/samtools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-j75lkvd0/samtools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1672293995.574551 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-j75lkvd0/samtools/samtools.spec) Config(fedora-rawhide-ppc64le) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1672293995.574551/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start(bootstrap): dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 40 MB/s | 38 MB 00:00 Additional repo https_jakub_fedorapeople_org_fe 247 kB/s | 84 kB 00:00 fedora 11 MB/s | 60 MB 00:05 Dependencies resolved. ========================================================================================================================== Package Arch Version Repository Size ========================================================================================================================== Installing: dnf noarch 4.14.0-1.fc38 fedora 480 k dnf-plugins-core noarch 4.3.1-1.fc38 fedora 34 k Installing dependencies: alternatives ppc64le 1.21-1.fc38 copr_base 41 k audit-libs ppc64le 3.0.9-2.fc38 fedora 130 k basesystem noarch 11-14.fc37 fedora 7.0 k bash ppc64le 5.2.9-3.fc38 copr_base 1.9 M bzip2-libs ppc64le 1.0.8-12.fc38 copr_base 48 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils ppc64le 9.1-8.fc38 copr_base 1.3 M coreutils-common ppc64le 9.1-8.fc38 copr_base 2.0 M crypto-policies noarch 20221215-1.gita4c31a3.fc38 fedora 90 k curl ppc64le 7.87.0-1.fc38 copr_base 348 k cyrus-sasl-lib ppc64le 2.1.28-8.fc38 copr_base 882 k dbus-libs ppc64le 1:1.14.4-1.fc38 copr_base 177 k dnf-data noarch 4.14.0-1.fc38 fedora 43 k elfutils-default-yama-scope noarch 0.188-3.fc38 copr_base 16 k elfutils-libelf ppc64le 0.188-3.fc38 copr_base 205 k elfutils-libs ppc64le 0.188-3.fc38 copr_base 291 k expat ppc64le 2.5.0-1.fc38 copr_base 117 k fedora-gpg-keys noarch 38-0.3 fedora 125 k fedora-release noarch 38-0.6 fedora 11 k fedora-release-common noarch 38-0.6 fedora 21 k fedora-release-identity-basic noarch 38-0.6 fedora 11 k fedora-repos noarch 38-0.3 fedora 10 k fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k file-libs ppc64le 5.42-4.fc38 copr_base 688 k filesystem ppc64le 3.18-2.fc37 fedora 1.1 M findutils ppc64le 1:4.9.0-2.fc38 copr_base 530 k gawk ppc64le 5.1.1-4.fc38 copr_base 1.0 M gdbm-libs ppc64le 1:1.23-2.fc38 copr_base 62 k glib2 ppc64le 2.74.1-2.fc38 copr_base 2.8 M glibc ppc64le 2.36.9000-19.fc38 fedora 2.2 M glibc-common ppc64le 2.36.9000-19.fc38 fedora 322 k glibc-minimal-langpack ppc64le 2.36.9000-19.fc38 fedora 30 k gmp ppc64le 1:6.2.1-3.fc38 copr_base 304 k gnupg2 ppc64le 2.3.8-1.fc38 copr_base 2.7 M gnutls ppc64le 3.7.8-9.fc38 copr_base 1.1 M gpgme ppc64le 1.17.1-3.fc38 copr_base 229 k grep ppc64le 3.8-1.fc38 copr_base 293 k ima-evm-utils ppc64le 1.4-6.fc38 copr_base 67 k json-c ppc64le 0.16-3.fc38 copr_base 46 k keyutils-libs ppc64le 1.6.1-5.fc38 copr_base 33 k krb5-libs ppc64le 1.20.1-3.fc38 copr_base 805 k libacl ppc64le 2.3.1-4.fc38 copr_base 26 k libarchive ppc64le 3.6.1-3.fc38 copr_base 464 k libassuan ppc64le 2.5.5-5.fc38 copr_base 71 k libattr ppc64le 2.5.1-5.fc38 copr_base 19 k libb2 ppc64le 0.98.1-7.fc38 copr_base 26 k libblkid ppc64le 2.38.1-3.fc38 fedora 122 k libbrotli ppc64le 1.0.9-9.fc38 copr_base 345 k libcap ppc64le 2.48-5.fc38 copr_base 73 k libcap-ng ppc64le 0.8.3-4.fc38 copr_base 34 k libcom_err ppc64le 1.46.5-3.fc38 copr_base 26 k libcomps ppc64le 0.1.18-4.fc38 copr_base 84 k libcurl ppc64le 7.87.0-1.fc38 copr_base 334 k libdnf ppc64le 0.68.0-1.fc38 copr_base 668 k libevent ppc64le 2.1.12-7.fc38 copr_base 276 k libffi ppc64le 3.4.4-1.fc38 copr_base 39 k libfsverity ppc64le 1.4-8.fc38 copr_base 20 k libgcc ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 88 k libgcrypt ppc64le 1.10.1-6.fc38 copr_base 596 k libgomp ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 314 k libgpg-error ppc64le 1.46-1.fc38 copr_base 233 k libidn2 ppc64le 2.3.4-1.fc38 copr_base 157 k libksba ppc64le 1.6.3-1.fc38 copr_base 175 k libmodulemd ppc64le 2.14.0-4.fc38 copr_base 233 k libmount ppc64le 2.38.1-3.fc38 fedora 154 k libnghttp2 ppc64le 1.51.0-1.fc38 copr_base 85 k libnsl2 ppc64le 2.0.0-4.fc38 copr_base 33 k libpsl ppc64le 0.21.1-6.fc38 copr_base 67 k librepo ppc64le 1.15.1-1.fc38 copr_base 104 k libreport-filesystem noarch 2.17.6-1.fc38 copr_base 14 k libselinux ppc64le 3.5-0.rc1.1.fc38 fedora 99 k libsemanage ppc64le 3.5-0.rc1.1.fc38 fedora 131 k libsepol ppc64le 3.5-0.rc1.1.fc38 fedora 356 k libsigsegv ppc64le 2.14-3.fc38 copr_base 28 k libsmartcols ppc64le 2.38.1-3.fc38 fedora 70 k libsolv ppc64le 0.7.22-3.fc38 copr_base 467 k libssh ppc64le 0.10.4-2.fc38 copr_base 236 k libssh-config noarch 0.10.4-2.fc38 copr_base 9.2 k libstdc++ ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 932 k libtasn1 ppc64le 4.19.0-1.fc38 copr_base 81 k libtirpc ppc64le 1.3.3-0.fc38 copr_base 108 k libunistring ppc64le 1.0-2.fc38 copr_base 575 k libuuid ppc64le 2.38.1-3.fc38 fedora 29 k libverto ppc64le 0.3.2-4.fc38 copr_base 23 k libxcrypt ppc64le 4.4.33-5.fc38 copr_base 133 k libxml2 ppc64le 2.10.3-2.fc38 copr_base 780 k libyaml ppc64le 0.2.5-8.fc38 copr_base 70 k libzstd ppc64le 1.5.2-3.fc37 fedora 316 k lua-libs ppc64le 5.4.4-6.fc38 copr_base 149 k lz4-libs ppc64le 1.9.3-5.fc38 copr_base 90 k mpdecimal ppc64le 2.5.1-4.fc38 copr_base 118 k mpfr ppc64le 4.1.1-2.fc38 copr_base 609 k ncurses-base noarch 6.3-5.20221126.fc38 copr_base 62 k ncurses-libs ppc64le 6.3-5.20221126.fc38 copr_base 374 k nettle ppc64le 3.8-2.fc38 copr_base 443 k npth ppc64le 1.6-10.fc38 copr_base 25 k openldap ppc64le 2.6.3-1.fc38 copr_base 288 k openssl-libs ppc64le 1:3.0.5-6.fc38 copr_base 2.2 M p11-kit ppc64le 0.24.1-5.fc38 copr_base 359 k p11-kit-trust ppc64le 0.24.1-5.fc38 copr_base 150 k pcre2 ppc64le 10.40-1.fc38.1 copr_base 242 k pcre2-syntax noarch 10.40-1.fc38.1 copr_base 143 k popt ppc64le 1.19-1.fc38 copr_base 64 k publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k python-pip-wheel noarch 22.3.1-1.fc38 fedora 1.4 M python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k python3 ppc64le 3.11.1-1.fc38 copr_base 28 k python3-dateutil noarch 1:2.8.2-4.fc37 fedora 361 k python3-dbus ppc64le 1.3.2-1.fc38 copr_base 152 k python3-distro noarch 1.8.0-1.fc38 fedora 49 k python3-dnf noarch 4.14.0-1.fc38 fedora 607 k python3-dnf-plugins-core noarch 4.3.1-1.fc38 fedora 277 k python3-gpg ppc64le 1.17.1-3.fc38 copr_base 285 k python3-hawkey ppc64le 0.68.0-1.fc38 copr_base 109 k python3-libcomps ppc64le 0.1.18-4.fc38 copr_base 53 k python3-libdnf ppc64le 0.68.0-1.fc38 copr_base 815 k python3-libs ppc64le 3.11.1-1.fc38 copr_base 9.3 M python3-rpm ppc64le 4.18.0-8.fc38 copr_base 102 k python3-six noarch 1.16.0-8.fc37 fedora 42 k readline ppc64le 8.2-2.fc38 copr_base 229 k rpm ppc64le 4.18.0-8.fc38 copr_base 538 k rpm-build-libs ppc64le 4.18.0-8.fc38 copr_base 103 k rpm-libs ppc64le 4.18.0-8.fc38 copr_base 355 k rpm-sequoia ppc64le 1.2.0-1.fc38 copr_base 1.4 M rpm-sign-libs ppc64le 4.18.0-8.fc38 copr_base 27 k sed ppc64le 4.8-11.fc37 fedora 313 k setup noarch 2.14.3-1.fc38 fedora 152 k shadow-utils ppc64le 2:4.13-3.fc38 fedora 1.3 M sqlite-libs ppc64le 3.40.0-1.fc38 fedora 776 k systemd-libs ppc64le 252.4-598.fc38 fedora 666 k tpm2-tss ppc64le 4.0.0-0.1.rc2.fc38 fedora 631 k tzdata noarch 2022g-1.fc38 fedora 716 k xz-libs ppc64le 5.2.9-1.fc38 fedora 104 k zchunk-libs ppc64le 1.2.3-1.fc38 fedora 55 k zlib ppc64le 1.2.13-1.fc38 fedora 100 k Transaction Summary ========================================================================================================================== Install 137 Packages Total download size: 59 M Installed size: 284 M Downloading Packages: (1/137): alternatives-1.21-1.fc38.ppc64le.rpm 186 kB/s | 41 kB 00:00 (2/137): bzip2-libs-1.0.8-12.fc38.ppc64le.rpm 211 kB/s | 48 kB 00:00 (3/137): coreutils-9.1-8.fc38.ppc64le.rpm 17 MB/s | 1.3 MB 00:00 (4/137): coreutils-common-9.1-8.fc38.ppc64le.rp 24 MB/s | 2.0 MB 00:00 (5/137): bash-5.2.9-3.fc38.ppc64le.rpm 5.8 MB/s | 1.9 MB 00:00 (6/137): curl-7.87.0-1.fc38.ppc64le.rpm 17 MB/s | 348 kB 00:00 (7/137): dbus-libs-1.14.4-1.fc38.ppc64le.rpm 14 MB/s | 177 kB 00:00 (8/137): elfutils-default-yama-scope-0.188-3.fc 1.2 MB/s | 16 kB 00:00 (9/137): cyrus-sasl-lib-2.1.28-8.fc38.ppc64le.r 30 MB/s | 882 kB 00:00 (10/137): expat-2.5.0-1.fc38.ppc64le.rpm 9.4 MB/s | 117 kB 00:00 (11/137): elfutils-libs-0.188-3.fc38.ppc64le.rp 15 MB/s | 291 kB 00:00 (12/137): elfutils-libelf-0.188-3.fc38.ppc64le. 7.6 MB/s | 205 kB 00:00 (13/137): findutils-4.9.0-2.fc38.ppc64le.rpm 22 MB/s | 530 kB 00:00 (14/137): file-libs-5.42-4.fc38.ppc64le.rpm 21 MB/s | 688 kB 00:00 (15/137): gawk-5.1.1-4.fc38.ppc64le.rpm 29 MB/s | 1.0 MB 00:00 (16/137): gdbm-libs-1.23-2.fc38.ppc64le.rpm 3.4 MB/s | 62 kB 00:00 (17/137): glib2-2.74.1-2.fc38.ppc64le.rpm 44 MB/s | 2.8 MB 00:00 (18/137): gmp-6.2.1-3.fc38.ppc64le.rpm 4.9 MB/s | 304 kB 00:00 (19/137): gnupg2-2.3.8-1.fc38.ppc64le.rpm 34 MB/s | 2.7 MB 00:00 (20/137): gnutls-3.7.8-9.fc38.ppc64le.rpm 32 MB/s | 1.1 MB 00:00 (21/137): gpgme-1.17.1-3.fc38.ppc64le.rpm 7.6 MB/s | 229 kB 00:00 (22/137): grep-3.8-1.fc38.ppc64le.rpm 17 MB/s | 293 kB 00:00 (23/137): json-c-0.16-3.fc38.ppc64le.rpm 4.1 MB/s | 46 kB 00:00 (24/137): ima-evm-utils-1.4-6.fc38.ppc64le.rpm 5.2 MB/s | 67 kB 00:00 (25/137): keyutils-libs-1.6.1-5.fc38.ppc64le.rp 3.2 MB/s | 33 kB 00:00 (26/137): libacl-2.3.1-4.fc38.ppc64le.rpm 2.7 MB/s | 26 kB 00:00 (27/137): libassuan-2.5.5-5.fc38.ppc64le.rpm 6.4 MB/s | 71 kB 00:00 (28/137): libarchive-3.6.1-3.fc38.ppc64le.rpm 21 MB/s | 464 kB 00:00 (29/137): libattr-2.5.1-5.fc38.ppc64le.rpm 1.8 MB/s | 19 kB 00:00 (30/137): krb5-libs-1.20.1-3.fc38.ppc64le.rpm 18 MB/s | 805 kB 00:00 (31/137): libb2-0.98.1-7.fc38.ppc64le.rpm 1.5 MB/s | 26 kB 00:00 (32/137): libbrotli-1.0.9-9.fc38.ppc64le.rpm 20 MB/s | 345 kB 00:00 (33/137): libcap-2.48-5.fc38.ppc64le.rpm 6.6 MB/s | 73 kB 00:00 (34/137): libcap-ng-0.8.3-4.fc38.ppc64le.rpm 3.3 MB/s | 34 kB 00:00 (35/137): libcom_err-1.46.5-3.fc38.ppc64le.rpm 2.8 MB/s | 26 kB 00:00 (36/137): libcomps-0.1.18-4.fc38.ppc64le.rpm 7.3 MB/s | 84 kB 00:00 (37/137): libcurl-7.87.0-1.fc38.ppc64le.rpm 19 MB/s | 334 kB 00:00 (38/137): libdnf-0.68.0-1.fc38.ppc64le.rpm 26 MB/s | 668 kB 00:00 (39/137): libffi-3.4.4-1.fc38.ppc64le.rpm 3.0 MB/s | 39 kB 00:00 (40/137): libfsverity-1.4-8.fc38.ppc64le.rpm 1.7 MB/s | 20 kB 00:00 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libsolv-0.7.22-3.fc38.ppc64le.rpm 20 MB/s | 467 kB 00:00 (56/137): libtasn1-4.19.0-1.fc38.ppc64le.rpm 5.7 MB/s | 81 kB 00:00 (57/137): libtirpc-1.3.3-0.fc38.ppc64le.rpm 7.4 MB/s | 108 kB 00:00 (58/137): libunistring-1.0-2.fc38.ppc64le.rpm 25 MB/s | 575 kB 00:00 (59/137): libverto-0.3.2-4.fc38.ppc64le.rpm 1.6 MB/s | 23 kB 00:00 (60/137): libxcrypt-4.4.33-5.fc38.ppc64le.rpm 9.4 MB/s | 133 kB 00:00 (61/137): libyaml-0.2.5-8.fc38.ppc64le.rpm 5.7 MB/s | 70 kB 00:00 (62/137): lua-libs-5.4.4-6.fc38.ppc64le.rpm 9.9 MB/s | 149 kB 00:00 (63/137): lz4-libs-1.9.3-5.fc38.ppc64le.rpm 7.6 MB/s | 90 kB 00:00 (64/137): mpdecimal-2.5.1-4.fc38.ppc64le.rpm 9.8 MB/s | 118 kB 00:00 (65/137): libxml2-2.10.3-2.fc38.ppc64le.rpm 22 MB/s | 780 kB 00:00 (66/137): ncurses-base-6.3-5.20221126.fc38.noar 4.9 MB/s | 62 kB 00:00 (67/137): mpfr-4.1.1-2.fc38.ppc64le.rpm 27 MB/s | 609 kB 00:00 (68/137): ncurses-libs-6.3-5.20221126.fc38.ppc6 14 MB/s | 374 kB 00:00 (69/137): npth-1.6-10.fc38.ppc64le.rpm 1.9 MB/s | 25 kB 00:00 (70/137): nettle-3.8-2.fc38.ppc64le.rpm 13 MB/s | 443 kB 00:00 (71/137): openldap-2.6.3-1.fc38.ppc64le.rpm 12 MB/s | 288 kB 00:00 (72/137): p11-kit-0.24.1-5.fc38.ppc64le.rpm 16 MB/s | 359 kB 00:00 (73/137): p11-kit-trust-0.24.1-5.fc38.ppc64le.r 9.2 MB/s | 150 kB 00:00 (74/137): openssl-libs-3.0.5-6.fc38.ppc64le.rpm 38 MB/s | 2.2 MB 00:00 (75/137): pcre2-10.40-1.fc38.1.ppc64le.rpm 8.7 MB/s | 242 kB 00:00 (76/137): pcre2-syntax-10.40-1.fc38.1.noarch.rp 5.9 MB/s | 143 kB 00:00 (77/137): popt-1.19-1.fc38.ppc64le.rpm 5.8 MB/s | 64 kB 00:00 (78/137): python3-3.11.1-1.fc38.ppc64le.rpm 3.1 MB/s | 28 kB 00:00 (79/137): python3-dbus-1.3.2-1.fc38.ppc64le.rpm 11 MB/s | 152 kB 00:00 (80/137): python3-hawkey-0.68.0-1.fc38.ppc64le. 7.2 MB/s | 109 kB 00:00 (81/137): python3-gpg-1.17.1-3.fc38.ppc64le.rpm 14 MB/s | 285 kB 00:00 (82/137): python3-libcomps-0.1.18-4.fc38.ppc64l 3.7 MB/s | 53 kB 00:00 (83/137): python3-rpm-4.18.0-8.fc38.ppc64le.rpm 1.5 MB/s | 102 kB 00:00 (84/137): 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dnf-data-4.14.0-1.fc38.noarch.rpm 465 kB/s | 43 kB 00:00 (99/137): dnf-plugins-core-4.3.1-1.fc38.noarch. 377 kB/s | 34 kB 00:00 (100/137): dnf-4.14.0-1.fc38.noarch.rpm 1.9 MB/s | 480 kB 00:00 (101/137): fedora-release-38-0.6.noarch.rpm 146 kB/s | 11 kB 00:00 (102/137): ca-certificates-2022.2.54-5.fc37.noa 1.3 MB/s | 829 kB 00:00 (103/137): fedora-gpg-keys-38-0.3.noarch.rpm 730 kB/s | 125 kB 00:00 (104/137): fedora-release-common-38-0.6.noarch. 285 kB/s | 21 kB 00:00 (105/137): fedora-release-identity-basic-38-0.6 156 kB/s | 11 kB 00:00 (106/137): fedora-repos-38-0.3.noarch.rpm 138 kB/s | 10 kB 00:00 (107/137): fedora-repos-rawhide-38-0.3.noarch.r 133 kB/s | 9.7 kB 00:00 (108/137): glibc-common-2.36.9000-19.fc38.ppc64 3.0 MB/s | 322 kB 00:00 (109/137): filesystem-3.18-2.fc37.ppc64le.rpm 5.9 MB/s | 1.1 MB 00:00 (110/137): glibc-minimal-langpack-2.36.9000-19. 353 kB/s | 30 kB 00:00 (111/137): libblkid-2.38.1-3.fc38.ppc64le.rpm 1.5 MB/s | 122 kB 00:00 (112/137): 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python3-dnf-4.14.0-1.fc38.noarch.rpm 5.1 MB/s | 607 kB 00:00 (127/137): python3-six-1.16.0-8.fc37.noarch.rpm 569 kB/s | 42 kB 00:00 (128/137): sed-4.8-11.fc37.ppc64le.rpm 3.8 MB/s | 313 kB 00:00 (129/137): setup-2.14.3-1.fc38.noarch.rpm 1.8 MB/s | 152 kB 00:00 (130/137): shadow-utils-4.13-3.fc38.ppc64le.rpm 11 MB/s | 1.3 MB 00:00 (131/137): sqlite-libs-3.40.0-1.fc38.ppc64le.rp 7.8 MB/s | 776 kB 00:00 (132/137): systemd-libs-252.4-598.fc38.ppc64le. 5.4 MB/s | 666 kB 00:00 (133/137): tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le. 6.6 MB/s | 631 kB 00:00 (134/137): tzdata-2022g-1.fc38.noarch.rpm 7.4 MB/s | 716 kB 00:00 (135/137): xz-libs-5.2.9-1.fc38.ppc64le.rpm 1.3 MB/s | 104 kB 00:00 (136/137): zchunk-libs-1.2.3-1.fc38.ppc64le.rpm 729 kB/s | 55 kB 00:00 (137/137): zlib-1.2.13-1.fc38.ppc64le.rpm 1.3 MB/s | 100 kB 00:00 -------------------------------------------------------------------------------- Total 17 MB/s | 59 MB 00:03 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.ppc64le 1/1 Preparing : 1/1 Installing : libgcc-13.0.0-0.4.fc38.ppc64le 1/137 Running scriptlet: libgcc-13.0.0-0.4.fc38.ppc64le 1/137 Installing : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/137 Running scriptlet: crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/137 Installing : tzdata-2022g-1.fc38.noarch 3/137 Installing : fedora-release-identity-basic-38-0.6.noarch 4/137 Installing : python-setuptools-wheel-65.5.1-1.fc38.noarch 5/137 Installing : publicsuffix-list-dafsa-20221208-1.fc38.noarch 6/137 Installing : fedora-gpg-keys-38-0.3.noarch 7/137 Installing : fedora-release-38-0.6.noarch 8/137 Installing : fedora-release-common-38-0.6.noarch 9/137 Installing : fedora-repos-rawhide-38-0.3.noarch 10/137 Installing : fedora-repos-38-0.3.noarch 11/137 Installing : setup-2.14.3-1.fc38.noarch 12/137 Running scriptlet: setup-2.14.3-1.fc38.noarch 12/137 Installing : filesystem-3.18-2.fc37.ppc64le 13/137 Installing : 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ca-certificates-2022.2.54-5.fc37.noarch 101/137 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 101/137 Installing : krb5-libs-1.20.1-3.fc38.ppc64le 102/137 Installing : libtirpc-1.3.3-0.fc38.ppc64le 103/137 Installing : libfsverity-1.4-8.fc38.ppc64le 104/137 Installing : zchunk-libs-1.2.3-1.fc38.ppc64le 105/137 Installing : libsolv-0.7.22-3.fc38.ppc64le 106/137 Installing : libnsl2-2.0.0-4.fc38.ppc64le 107/137 Installing : libssh-0.10.4-2.fc38.ppc64le 108/137 Installing : python-pip-wheel-22.3.1-1.fc38.noarch 109/137 Installing : python3-3.11.1-1.fc38.ppc64le 110/137 Installing : python3-libs-3.11.1-1.fc38.ppc64le 111/137 Installing : python3-dbus-1.3.2-1.fc38.ppc64le 112/137 Installing : python3-libcomps-0.1.18-4.fc38.ppc64le 113/137 Installing : python3-distro-1.8.0-1.fc38.noarch 114/137 Installing : python3-six-1.16.0-8.fc37.noarch 115/137 Installing : python3-dateutil-1:2.8.2-4.fc37.noarch 116/137 Installing : libarchive-3.6.1-3.fc38.ppc64le 117/137 Installing : libevent-2.1.12-7.fc38.ppc64le 118/137 Installing : openldap-2.6.3-1.fc38.ppc64le 119/137 Installing : libcurl-7.87.0-1.fc38.ppc64le 120/137 Installing : gnupg2-2.3.8-1.fc38.ppc64le 121/137 Installing : gpgme-1.17.1-3.fc38.ppc64le 122/137 Installing : librepo-1.15.1-1.fc38.ppc64le 123/137 Installing : libdnf-0.68.0-1.fc38.ppc64le 124/137 Installing : python3-libdnf-0.68.0-1.fc38.ppc64le 125/137 Installing : python3-hawkey-0.68.0-1.fc38.ppc64le 126/137 Installing : python3-gpg-1.17.1-3.fc38.ppc64le 127/137 Installing : curl-7.87.0-1.fc38.ppc64le 128/137 Running scriptlet: tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le 129/137 useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Installing : tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le 129/137 Installing : ima-evm-utils-1.4-6.fc38.ppc64le 130/137 Installing : rpm-sign-libs-4.18.0-8.fc38.ppc64le 131/137 Installing : python3-rpm-4.18.0-8.fc38.ppc64le 132/137 Installing : python3-dnf-4.14.0-1.fc38.noarch 133/137 Installing : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 134/137 Installing : dnf-plugins-core-4.3.1-1.fc38.noarch 135/137 Installing : dnf-4.14.0-1.fc38.noarch 136/137 Running scriptlet: dnf-4.14.0-1.fc38.noarch 136/137 Running scriptlet: rpm-4.18.0-8.fc38.ppc64le 137/137 Installing : rpm-4.18.0-8.fc38.ppc64le 137/137 Running scriptlet: filesystem-3.18-2.fc37.ppc64le 137/137 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 137/137 Running scriptlet: rpm-4.18.0-8.fc38.ppc64le 137/137 Verifying : alternatives-1.21-1.fc38.ppc64le 1/137 Verifying : bash-5.2.9-3.fc38.ppc64le 2/137 Verifying : bzip2-libs-1.0.8-12.fc38.ppc64le 3/137 Verifying : coreutils-9.1-8.fc38.ppc64le 4/137 Verifying : coreutils-common-9.1-8.fc38.ppc64le 5/137 Verifying : curl-7.87.0-1.fc38.ppc64le 6/137 Verifying : cyrus-sasl-lib-2.1.28-8.fc38.ppc64le 7/137 Verifying : dbus-libs-1:1.14.4-1.fc38.ppc64le 8/137 Verifying : elfutils-default-yama-scope-0.188-3.fc38.noarch 9/137 Verifying : elfutils-libelf-0.188-3.fc38.ppc64le 10/137 Verifying : elfutils-libs-0.188-3.fc38.ppc64le 11/137 Verifying : expat-2.5.0-1.fc38.ppc64le 12/137 Verifying : file-libs-5.42-4.fc38.ppc64le 13/137 Verifying : findutils-1:4.9.0-2.fc38.ppc64le 14/137 Verifying : gawk-5.1.1-4.fc38.ppc64le 15/137 Verifying : gdbm-libs-1:1.23-2.fc38.ppc64le 16/137 Verifying : glib2-2.74.1-2.fc38.ppc64le 17/137 Verifying : gmp-1:6.2.1-3.fc38.ppc64le 18/137 Verifying : gnupg2-2.3.8-1.fc38.ppc64le 19/137 Verifying : gnutls-3.7.8-9.fc38.ppc64le 20/137 Verifying : gpgme-1.17.1-3.fc38.ppc64le 21/137 Verifying : grep-3.8-1.fc38.ppc64le 22/137 Verifying : ima-evm-utils-1.4-6.fc38.ppc64le 23/137 Verifying : json-c-0.16-3.fc38.ppc64le 24/137 Verifying : keyutils-libs-1.6.1-5.fc38.ppc64le 25/137 Verifying : krb5-libs-1.20.1-3.fc38.ppc64le 26/137 Verifying : libacl-2.3.1-4.fc38.ppc64le 27/137 Verifying : libarchive-3.6.1-3.fc38.ppc64le 28/137 Verifying : libassuan-2.5.5-5.fc38.ppc64le 29/137 Verifying : libattr-2.5.1-5.fc38.ppc64le 30/137 Verifying : libb2-0.98.1-7.fc38.ppc64le 31/137 Verifying : libbrotli-1.0.9-9.fc38.ppc64le 32/137 Verifying : libcap-2.48-5.fc38.ppc64le 33/137 Verifying : libcap-ng-0.8.3-4.fc38.ppc64le 34/137 Verifying : libcom_err-1.46.5-3.fc38.ppc64le 35/137 Verifying : libcomps-0.1.18-4.fc38.ppc64le 36/137 Verifying : libcurl-7.87.0-1.fc38.ppc64le 37/137 Verifying : libdnf-0.68.0-1.fc38.ppc64le 38/137 Verifying : libevent-2.1.12-7.fc38.ppc64le 39/137 Verifying : libffi-3.4.4-1.fc38.ppc64le 40/137 Verifying : libfsverity-1.4-8.fc38.ppc64le 41/137 Verifying : libgcrypt-1.10.1-6.fc38.ppc64le 42/137 Verifying : libgpg-error-1.46-1.fc38.ppc64le 43/137 Verifying : libidn2-2.3.4-1.fc38.ppc64le 44/137 Verifying : libksba-1.6.3-1.fc38.ppc64le 45/137 Verifying : libmodulemd-2.14.0-4.fc38.ppc64le 46/137 Verifying : libnghttp2-1.51.0-1.fc38.ppc64le 47/137 Verifying : libnsl2-2.0.0-4.fc38.ppc64le 48/137 Verifying : libpsl-0.21.1-6.fc38.ppc64le 49/137 Verifying : librepo-1.15.1-1.fc38.ppc64le 50/137 Verifying : libreport-filesystem-2.17.6-1.fc38.noarch 51/137 Verifying : libsigsegv-2.14-3.fc38.ppc64le 52/137 Verifying : libsolv-0.7.22-3.fc38.ppc64le 53/137 Verifying : libssh-0.10.4-2.fc38.ppc64le 54/137 Verifying : libssh-config-0.10.4-2.fc38.noarch 55/137 Verifying : libtasn1-4.19.0-1.fc38.ppc64le 56/137 Verifying : libtirpc-1.3.3-0.fc38.ppc64le 57/137 Verifying : libunistring-1.0-2.fc38.ppc64le 58/137 Verifying : libverto-0.3.2-4.fc38.ppc64le 59/137 Verifying : libxcrypt-4.4.33-5.fc38.ppc64le 60/137 Verifying : libxml2-2.10.3-2.fc38.ppc64le 61/137 Verifying : libyaml-0.2.5-8.fc38.ppc64le 62/137 Verifying : lua-libs-5.4.4-6.fc38.ppc64le 63/137 Verifying : lz4-libs-1.9.3-5.fc38.ppc64le 64/137 Verifying : mpdecimal-2.5.1-4.fc38.ppc64le 65/137 Verifying : mpfr-4.1.1-2.fc38.ppc64le 66/137 Verifying : ncurses-base-6.3-5.20221126.fc38.noarch 67/137 Verifying : ncurses-libs-6.3-5.20221126.fc38.ppc64le 68/137 Verifying : nettle-3.8-2.fc38.ppc64le 69/137 Verifying : npth-1.6-10.fc38.ppc64le 70/137 Verifying : openldap-2.6.3-1.fc38.ppc64le 71/137 Verifying : openssl-libs-1:3.0.5-6.fc38.ppc64le 72/137 Verifying : p11-kit-0.24.1-5.fc38.ppc64le 73/137 Verifying : p11-kit-trust-0.24.1-5.fc38.ppc64le 74/137 Verifying : pcre2-10.40-1.fc38.1.ppc64le 75/137 Verifying : pcre2-syntax-10.40-1.fc38.1.noarch 76/137 Verifying : popt-1.19-1.fc38.ppc64le 77/137 Verifying : python3-3.11.1-1.fc38.ppc64le 78/137 Verifying : python3-dbus-1.3.2-1.fc38.ppc64le 79/137 Verifying : python3-gpg-1.17.1-3.fc38.ppc64le 80/137 Verifying : python3-hawkey-0.68.0-1.fc38.ppc64le 81/137 Verifying : python3-libcomps-0.1.18-4.fc38.ppc64le 82/137 Verifying : python3-libdnf-0.68.0-1.fc38.ppc64le 83/137 Verifying : python3-libs-3.11.1-1.fc38.ppc64le 84/137 Verifying : python3-rpm-4.18.0-8.fc38.ppc64le 85/137 Verifying : readline-8.2-2.fc38.ppc64le 86/137 Verifying : rpm-4.18.0-8.fc38.ppc64le 87/137 Verifying : rpm-build-libs-4.18.0-8.fc38.ppc64le 88/137 Verifying : rpm-libs-4.18.0-8.fc38.ppc64le 89/137 Verifying : rpm-sequoia-1.2.0-1.fc38.ppc64le 90/137 Verifying : rpm-sign-libs-4.18.0-8.fc38.ppc64le 91/137 Verifying : libgcc-13.0.0-0.4.fc38.ppc64le 92/137 Verifying : libgomp-13.0.0-0.4.fc38.ppc64le 93/137 Verifying : libstdc++-13.0.0-0.4.fc38.ppc64le 94/137 Verifying : audit-libs-3.0.9-2.fc38.ppc64le 95/137 Verifying : basesystem-11-14.fc37.noarch 96/137 Verifying : ca-certificates-2022.2.54-5.fc37.noarch 97/137 Verifying : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 98/137 Verifying : dnf-4.14.0-1.fc38.noarch 99/137 Verifying : dnf-data-4.14.0-1.fc38.noarch 100/137 Verifying : dnf-plugins-core-4.3.1-1.fc38.noarch 101/137 Verifying : fedora-gpg-keys-38-0.3.noarch 102/137 Verifying : fedora-release-38-0.6.noarch 103/137 Verifying : fedora-release-common-38-0.6.noarch 104/137 Verifying : fedora-release-identity-basic-38-0.6.noarch 105/137 Verifying : fedora-repos-38-0.3.noarch 106/137 Verifying : fedora-repos-rawhide-38-0.3.noarch 107/137 Verifying : filesystem-3.18-2.fc37.ppc64le 108/137 Verifying : glibc-2.36.9000-19.fc38.ppc64le 109/137 Verifying : glibc-common-2.36.9000-19.fc38.ppc64le 110/137 Verifying : glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le 111/137 Verifying : libblkid-2.38.1-3.fc38.ppc64le 112/137 Verifying : libmount-2.38.1-3.fc38.ppc64le 113/137 Verifying : libselinux-3.5-0.rc1.1.fc38.ppc64le 114/137 Verifying : libsemanage-3.5-0.rc1.1.fc38.ppc64le 115/137 Verifying : libsepol-3.5-0.rc1.1.fc38.ppc64le 116/137 Verifying : libsmartcols-2.38.1-3.fc38.ppc64le 117/137 Verifying : libuuid-2.38.1-3.fc38.ppc64le 118/137 Verifying : libzstd-1.5.2-3.fc37.ppc64le 119/137 Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 120/137 Verifying : python-pip-wheel-22.3.1-1.fc38.noarch 121/137 Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 122/137 Verifying : python3-dateutil-1:2.8.2-4.fc37.noarch 123/137 Verifying : python3-distro-1.8.0-1.fc38.noarch 124/137 Verifying : python3-dnf-4.14.0-1.fc38.noarch 125/137 Verifying : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 126/137 Verifying : python3-six-1.16.0-8.fc37.noarch 127/137 Verifying : sed-4.8-11.fc37.ppc64le 128/137 Verifying : setup-2.14.3-1.fc38.noarch 129/137 Verifying : shadow-utils-2:4.13-3.fc38.ppc64le 130/137 Verifying : sqlite-libs-3.40.0-1.fc38.ppc64le 131/137 Verifying : systemd-libs-252.4-598.fc38.ppc64le 132/137 Verifying : tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le 133/137 Verifying : tzdata-2022g-1.fc38.noarch 134/137 Verifying : xz-libs-5.2.9-1.fc38.ppc64le 135/137 Verifying : zchunk-libs-1.2.3-1.fc38.ppc64le 136/137 Verifying : zlib-1.2.13-1.fc38.ppc64le 137/137 Installed products updated. Installed: alternatives-1.21-1.fc38.ppc64le audit-libs-3.0.9-2.fc38.ppc64le basesystem-11-14.fc37.noarch bash-5.2.9-3.fc38.ppc64le bzip2-libs-1.0.8-12.fc38.ppc64le ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-8.fc38.ppc64le coreutils-common-9.1-8.fc38.ppc64le crypto-policies-20221215-1.gita4c31a3.fc38.noarch curl-7.87.0-1.fc38.ppc64le cyrus-sasl-lib-2.1.28-8.fc38.ppc64le dbus-libs-1:1.14.4-1.fc38.ppc64le dnf-4.14.0-1.fc38.noarch dnf-data-4.14.0-1.fc38.noarch dnf-plugins-core-4.3.1-1.fc38.noarch elfutils-default-yama-scope-0.188-3.fc38.noarch elfutils-libelf-0.188-3.fc38.ppc64le elfutils-libs-0.188-3.fc38.ppc64le expat-2.5.0-1.fc38.ppc64le fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.6.noarch fedora-release-common-38-0.6.noarch fedora-release-identity-basic-38-0.6.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-libs-5.42-4.fc38.ppc64le filesystem-3.18-2.fc37.ppc64le findutils-1:4.9.0-2.fc38.ppc64le gawk-5.1.1-4.fc38.ppc64le gdbm-libs-1:1.23-2.fc38.ppc64le glib2-2.74.1-2.fc38.ppc64le glibc-2.36.9000-19.fc38.ppc64le glibc-common-2.36.9000-19.fc38.ppc64le glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le gmp-1:6.2.1-3.fc38.ppc64le gnupg2-2.3.8-1.fc38.ppc64le gnutls-3.7.8-9.fc38.ppc64le gpgme-1.17.1-3.fc38.ppc64le grep-3.8-1.fc38.ppc64le ima-evm-utils-1.4-6.fc38.ppc64le json-c-0.16-3.fc38.ppc64le keyutils-libs-1.6.1-5.fc38.ppc64le krb5-libs-1.20.1-3.fc38.ppc64le libacl-2.3.1-4.fc38.ppc64le libarchive-3.6.1-3.fc38.ppc64le libassuan-2.5.5-5.fc38.ppc64le libattr-2.5.1-5.fc38.ppc64le libb2-0.98.1-7.fc38.ppc64le libblkid-2.38.1-3.fc38.ppc64le libbrotli-1.0.9-9.fc38.ppc64le libcap-2.48-5.fc38.ppc64le libcap-ng-0.8.3-4.fc38.ppc64le libcom_err-1.46.5-3.fc38.ppc64le libcomps-0.1.18-4.fc38.ppc64le libcurl-7.87.0-1.fc38.ppc64le libdnf-0.68.0-1.fc38.ppc64le libevent-2.1.12-7.fc38.ppc64le libffi-3.4.4-1.fc38.ppc64le libfsverity-1.4-8.fc38.ppc64le libgcc-13.0.0-0.4.fc38.ppc64le libgcrypt-1.10.1-6.fc38.ppc64le libgomp-13.0.0-0.4.fc38.ppc64le libgpg-error-1.46-1.fc38.ppc64le libidn2-2.3.4-1.fc38.ppc64le libksba-1.6.3-1.fc38.ppc64le libmodulemd-2.14.0-4.fc38.ppc64le libmount-2.38.1-3.fc38.ppc64le libnghttp2-1.51.0-1.fc38.ppc64le libnsl2-2.0.0-4.fc38.ppc64le libpsl-0.21.1-6.fc38.ppc64le librepo-1.15.1-1.fc38.ppc64le libreport-filesystem-2.17.6-1.fc38.noarch libselinux-3.5-0.rc1.1.fc38.ppc64le libsemanage-3.5-0.rc1.1.fc38.ppc64le libsepol-3.5-0.rc1.1.fc38.ppc64le libsigsegv-2.14-3.fc38.ppc64le libsmartcols-2.38.1-3.fc38.ppc64le libsolv-0.7.22-3.fc38.ppc64le libssh-0.10.4-2.fc38.ppc64le libssh-config-0.10.4-2.fc38.noarch libstdc++-13.0.0-0.4.fc38.ppc64le libtasn1-4.19.0-1.fc38.ppc64le libtirpc-1.3.3-0.fc38.ppc64le libunistring-1.0-2.fc38.ppc64le libuuid-2.38.1-3.fc38.ppc64le libverto-0.3.2-4.fc38.ppc64le libxcrypt-4.4.33-5.fc38.ppc64le libxml2-2.10.3-2.fc38.ppc64le libyaml-0.2.5-8.fc38.ppc64le libzstd-1.5.2-3.fc37.ppc64le lua-libs-5.4.4-6.fc38.ppc64le lz4-libs-1.9.3-5.fc38.ppc64le mpdecimal-2.5.1-4.fc38.ppc64le mpfr-4.1.1-2.fc38.ppc64le ncurses-base-6.3-5.20221126.fc38.noarch ncurses-libs-6.3-5.20221126.fc38.ppc64le nettle-3.8-2.fc38.ppc64le npth-1.6-10.fc38.ppc64le openldap-2.6.3-1.fc38.ppc64le openssl-libs-1:3.0.5-6.fc38.ppc64le p11-kit-0.24.1-5.fc38.ppc64le p11-kit-trust-0.24.1-5.fc38.ppc64le pcre2-10.40-1.fc38.1.ppc64le pcre2-syntax-10.40-1.fc38.1.noarch popt-1.19-1.fc38.ppc64le publicsuffix-list-dafsa-20221208-1.fc38.noarch python-pip-wheel-22.3.1-1.fc38.noarch python-setuptools-wheel-65.5.1-1.fc38.noarch python3-3.11.1-1.fc38.ppc64le python3-dateutil-1:2.8.2-4.fc37.noarch python3-dbus-1.3.2-1.fc38.ppc64le python3-distro-1.8.0-1.fc38.noarch python3-dnf-4.14.0-1.fc38.noarch python3-dnf-plugins-core-4.3.1-1.fc38.noarch python3-gpg-1.17.1-3.fc38.ppc64le python3-hawkey-0.68.0-1.fc38.ppc64le python3-libcomps-0.1.18-4.fc38.ppc64le python3-libdnf-0.68.0-1.fc38.ppc64le python3-libs-3.11.1-1.fc38.ppc64le python3-rpm-4.18.0-8.fc38.ppc64le python3-six-1.16.0-8.fc37.noarch readline-8.2-2.fc38.ppc64le rpm-4.18.0-8.fc38.ppc64le rpm-build-libs-4.18.0-8.fc38.ppc64le rpm-libs-4.18.0-8.fc38.ppc64le rpm-sequoia-1.2.0-1.fc38.ppc64le rpm-sign-libs-4.18.0-8.fc38.ppc64le sed-4.8-11.fc37.ppc64le setup-2.14.3-1.fc38.noarch shadow-utils-2:4.13-3.fc38.ppc64le sqlite-libs-3.40.0-1.fc38.ppc64le systemd-libs-252.4-598.fc38.ppc64le tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le tzdata-2022g-1.fc38.noarch xz-libs-5.2.9-1.fc38.ppc64le zchunk-libs-1.2.3-1.fc38.ppc64le zlib-1.2.13-1.fc38.ppc64le Complete! Finish(bootstrap): dnf install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1672293995.574551/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 32 MB/s | 38 MB 00:01 Additional repo https_jakub_fedorapeople_org_fe 122 kB/s | 84 kB 00:00 fedora 13 MB/s | 60 MB 00:04 Dependencies resolved. ========================================================================================================================== Package Arch Version Repository Size ========================================================================================================================== Installing group/module packages: bash ppc64le 5.2.9-3.fc38 copr_base 1.9 M bzip2 ppc64le 1.0.8-12.fc38 copr_base 54 k coreutils ppc64le 9.1-8.fc38 copr_base 1.3 M cpio ppc64le 2.13-13.fc38 copr_base 277 k diffutils ppc64le 3.8-3.fc38 copr_base 381 k fedora-release-common noarch 38-0.6 fedora 21 k findutils ppc64le 1:4.9.0-2.fc38 copr_base 530 k gawk ppc64le 5.1.1-4.fc38 copr_base 1.0 M glibc-minimal-langpack ppc64le 2.36.9000-19.fc38 fedora 30 k grep ppc64le 3.8-1.fc38 copr_base 293 k gzip ppc64le 1.12-2.fc38 copr_base 163 k info ppc64le 7.0.1-1.fc38 fedora 199 k patch ppc64le 2.7.6-17.fc38 copr_base 136 k redhat-rpm-config noarch 235-1.fc38 copr_base 74 k rpm-build ppc64le 4.18.0-8.fc38 copr_base 71 k sed ppc64le 4.8-11.fc37 fedora 313 k shadow-utils ppc64le 2:4.13-3.fc38 fedora 1.3 M tar ppc64le 2:1.34-5.fc38 fedora 914 k unzip ppc64le 6.0-58.fc38 fedora 188 k util-linux ppc64le 2.38.1-3.fc38 fedora 2.4 M which ppc64le 2.21-36.fc38 fedora 42 k xz ppc64le 5.2.9-1.fc38 fedora 310 k Installing dependencies: alternatives ppc64le 1.21-1.fc38 copr_base 41 k ansible-srpm-macros noarch 1-8.1.fc38 fedora 8.6 k audit-libs ppc64le 3.0.9-2.fc38 fedora 130 k authselect ppc64le 1.4.2-1.fc38 copr_base 141 k authselect-libs ppc64le 1.4.2-1.fc38 copr_base 241 k basesystem noarch 11-14.fc37 fedora 7.0 k binutils ppc64le 2.39-6.fc38 copr_base 6.2 M binutils-gold ppc64le 2.39-6.fc38 copr_base 1.1 M bzip2-libs ppc64le 1.0.8-12.fc38 copr_base 48 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils-common ppc64le 9.1-8.fc38 copr_base 2.0 M cracklib ppc64le 2.9.7-30.fc38 copr_base 84 k crypto-policies noarch 20221215-1.gita4c31a3.fc38 fedora 90 k curl ppc64le 7.87.0-1.fc38 copr_base 348 k cyrus-sasl-lib ppc64le 2.1.28-8.fc38 copr_base 882 k debugedit ppc64le 5.0-5.fc37 fedora 80 k dwz ppc64le 0.15-1.fc38 copr_base 143 k ed ppc64le 1.18-2.fc38 copr_base 82 k efi-srpm-macros noarch 5-6.fc37 fedora 22 k elfutils ppc64le 0.188-3.fc38 copr_base 555 k elfutils-debuginfod-client ppc64le 0.188-3.fc38 copr_base 42 k elfutils-default-yama-scope noarch 0.188-3.fc38 copr_base 16 k elfutils-libelf ppc64le 0.188-3.fc38 copr_base 205 k elfutils-libs ppc64le 0.188-3.fc38 copr_base 291 k fedora-gpg-keys noarch 38-0.3 fedora 125 k fedora-release noarch 38-0.6 fedora 11 k fedora-release-identity-basic noarch 38-0.6 fedora 11 k fedora-repos noarch 38-0.3 fedora 10 k fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k file ppc64le 5.42-4.fc38 copr_base 50 k file-libs ppc64le 5.42-4.fc38 copr_base 688 k filesystem ppc64le 3.18-2.fc37 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-10.fc38 fedora 26 k fpc-srpm-macros noarch 1.3-6.fc37 fedora 7.7 k gdb-minimal ppc64le 12.1-10.fc38 fedora 3.7 M gdbm-libs ppc64le 1:1.23-2.fc38 copr_base 62 k ghc-srpm-macros noarch 1.5.0-7.fc37 fedora 7.8 k glibc ppc64le 2.36.9000-19.fc38 fedora 2.2 M glibc-common ppc64le 2.36.9000-19.fc38 fedora 322 k glibc-gconv-extra ppc64le 2.36.9000-19.fc38 fedora 1.9 M gmp ppc64le 1:6.2.1-3.fc38 copr_base 304 k gnat-srpm-macros noarch 4-16.fc37 fedora 8.3 k go-srpm-macros noarch 3.2.0-1.fc38 fedora 27 k jansson ppc64le 2.13.1-5.fc38 copr_base 50 k kernel-srpm-macros noarch 1.0-15.fc37 fedora 9.4 k keyutils-libs ppc64le 1.6.1-5.fc38 copr_base 33 k krb5-libs ppc64le 1.20.1-3.fc38 copr_base 805 k libacl ppc64le 2.3.1-4.fc38 copr_base 26 k libarchive ppc64le 3.6.1-3.fc38 copr_base 464 k libattr ppc64le 2.5.1-5.fc38 copr_base 19 k libblkid ppc64le 2.38.1-3.fc38 fedora 122 k libbrotli ppc64le 1.0.9-9.fc38 copr_base 345 k libcap ppc64le 2.48-5.fc38 copr_base 73 k libcap-ng ppc64le 0.8.3-4.fc38 copr_base 34 k libcom_err ppc64le 1.46.5-3.fc38 copr_base 26 k libcurl ppc64le 7.87.0-1.fc38 copr_base 334 k libdb ppc64le 5.3.28-54.fc38 copr_base 842 k libeconf ppc64le 0.4.0-4.fc38 copr_base 31 k libevent ppc64le 2.1.12-7.fc38 copr_base 276 k libfdisk ppc64le 2.38.1-3.fc38 fedora 176 k libffi ppc64le 3.4.4-1.fc38 copr_base 39 k libgcc ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 88 k libgomp ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 314 k libidn2 ppc64le 2.3.4-1.fc38 copr_base 157 k libmount ppc64le 2.38.1-3.fc38 fedora 154 k libnghttp2 ppc64le 1.51.0-1.fc38 copr_base 85 k libnsl2 ppc64le 2.0.0-4.fc38 copr_base 33 k libpkgconf ppc64le 1.8.0-3.fc38 copr_base 40 k libpsl ppc64le 0.21.1-6.fc38 copr_base 67 k libpwquality ppc64le 1.4.5-1.fc38 fedora 122 k librtas ppc64le 2.0.3-1.fc38 copr_base 68 k libselinux ppc64le 3.5-0.rc1.1.fc38 fedora 99 k libsemanage ppc64le 3.5-0.rc1.1.fc38 fedora 131 k libsepol ppc64le 3.5-0.rc1.1.fc38 fedora 356 k libsigsegv ppc64le 2.14-3.fc38 copr_base 28 k libsmartcols ppc64le 2.38.1-3.fc38 fedora 70 k libssh ppc64le 0.10.4-2.fc38 copr_base 236 k libssh-config noarch 0.10.4-2.fc38 copr_base 9.2 k libstdc++ ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 932 k libtasn1 ppc64le 4.19.0-1.fc38 copr_base 81 k libtirpc ppc64le 1.3.3-0.fc38 copr_base 108 k libunistring ppc64le 1.0-2.fc38 copr_base 575 k libutempter ppc64le 1.2.1-7.fc38 copr_base 27 k libuuid ppc64le 2.38.1-3.fc38 fedora 29 k libverto ppc64le 0.3.2-4.fc38 copr_base 23 k libxcrypt ppc64le 4.4.33-5.fc38 copr_base 133 k libxml2 ppc64le 2.10.3-2.fc38 copr_base 780 k libzstd ppc64le 1.5.2-3.fc37 fedora 316 k lua-libs ppc64le 5.4.4-6.fc38 copr_base 149 k lua-srpm-macros noarch 1-7.fc37 fedora 8.8 k lz4-libs ppc64le 1.9.3-5.fc38 copr_base 90 k mpfr ppc64le 4.1.1-2.fc38 copr_base 609 k ncurses-base noarch 6.3-5.20221126.fc38 copr_base 62 k ncurses-libs ppc64le 6.3-5.20221126.fc38 copr_base 374 k nettle ppc64le 3.8-2.fc38 copr_base 443 k nim-srpm-macros noarch 3-7.fc37 fedora 8.4 k ocaml-srpm-macros noarch 7-2.fc37 fedora 13 k openblas-srpm-macros noarch 2-12.fc37 fedora 7.5 k openldap ppc64le 2.6.3-1.fc38 copr_base 288 k openssl-libs ppc64le 1:3.0.5-6.fc38 copr_base 2.2 M p11-kit ppc64le 0.24.1-5.fc38 copr_base 359 k p11-kit-trust ppc64le 0.24.1-5.fc38 copr_base 150 k package-notes-srpm-macros noarch 0.5-6.fc38 fedora 11 k pam ppc64le 1.5.2-15.fc38 copr_base 569 k pam-libs ppc64le 1.5.2-15.fc38 copr_base 64 k pcre2 ppc64le 10.40-1.fc38.1 copr_base 242 k pcre2-syntax noarch 10.40-1.fc38.1 copr_base 143 k perl-srpm-macros noarch 1-47.fc38 fedora 8.2 k pkgconf ppc64le 1.8.0-3.fc38 copr_base 43 k pkgconf-m4 noarch 1.8.0-3.fc38 copr_base 15 k pkgconf-pkg-config ppc64le 1.8.0-3.fc38 copr_base 11 k popt ppc64le 1.19-1.fc38 copr_base 64 k publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k python-srpm-macros noarch 3.11-6.fc38 fedora 25 k qt5-srpm-macros noarch 5.15.7-1.fc38 copr_base 8.4 k readline ppc64le 8.2-2.fc38 copr_base 229 k rpm ppc64le 4.18.0-8.fc38 copr_base 538 k rpm-build-libs ppc64le 4.18.0-8.fc38 copr_base 103 k rpm-libs ppc64le 4.18.0-8.fc38 copr_base 355 k rpm-sequoia ppc64le 1.2.0-1.fc38 copr_base 1.4 M rpmautospec-rpm-macros noarch 0.3.1-1.fc38 copr_base 9.3 k rust-srpm-macros noarch 23-1.fc38 fedora 9.4 k setup noarch 2.14.3-1.fc38 fedora 152 k sqlite-libs ppc64le 3.40.0-1.fc38 fedora 776 k systemd-libs ppc64le 252.4-598.fc38 fedora 666 k tzdata noarch 2022g-1.fc38 fedora 716 k util-linux-core ppc64le 2.38.1-3.fc38 fedora 515 k xxhash-libs ppc64le 0.8.1-3.fc37 fedora 38 k xz-libs ppc64le 5.2.9-1.fc38 fedora 104 k zip ppc64le 3.0-35.fc38 fedora 267 k zlib ppc64le 1.2.13-1.fc38 fedora 100 k zstd ppc64le 1.5.2-3.fc37 fedora 466 k Installing Groups: Buildsystem building group Transaction Summary ========================================================================================================================== Install 154 Packages Total download size: 57 M Installed size: 328 M Downloading Packages: (1/154): alternatives-1.21-1.fc38.ppc64le.rpm 125 kB/s | 41 kB 00:00 (2/154): authselect-1.4.2-1.fc38.ppc64le.rpm 410 kB/s | 141 kB 00:00 (3/154): authselect-libs-1.4.2-1.fc38.ppc64le.r 681 kB/s | 241 kB 00:00 (4/154): bash-5.2.9-3.fc38.ppc64le.rpm 21 MB/s | 1.9 MB 00:00 (5/154): binutils-gold-2.39-6.fc38.ppc64le.rpm 8.7 MB/s | 1.1 MB 00:00 (6/154): binutils-2.39-6.fc38.ppc64le.rpm 30 MB/s | 6.2 MB 00:00 (7/154): bzip2-1.0.8-12.fc38.ppc64le.rpm 388 kB/s | 54 kB 00:00 (8/154): bzip2-libs-1.0.8-12.fc38.ppc64le.rpm 691 kB/s | 48 kB 00:00 (9/154): coreutils-9.1-8.fc38.ppc64le.rpm 43 MB/s | 1.3 MB 00:00 (10/154): coreutils-common-9.1-8.fc38.ppc64le.r 33 MB/s | 2.0 MB 00:00 (11/154): cpio-2.13-13.fc38.ppc64le.rpm 3.2 MB/s | 277 kB 00:00 (12/154): cracklib-2.9.7-30.fc38.ppc64le.rpm 1.5 MB/s | 84 kB 00:00 (13/154): curl-7.87.0-1.fc38.ppc64le.rpm 13 MB/s | 348 kB 00:00 (14/154): cyrus-sasl-lib-2.1.28-8.fc38.ppc64le. 25 MB/s | 882 kB 00:00 (15/154): dwz-0.15-1.fc38.ppc64le.rpm 4.1 MB/s | 143 kB 00:00 (16/154): diffutils-3.8-3.fc38.ppc64le.rpm 9.5 MB/s | 381 kB 00:00 (17/154): ed-1.18-2.fc38.ppc64le.rpm 6.6 MB/s | 82 kB 00:00 (18/154): elfutils-0.188-3.fc38.ppc64le.rpm 29 MB/s | 555 kB 00:00 (19/154): elfutils-debuginfod-client-0.188-3.fc 2.5 MB/s | 42 kB 00:00 (20/154): elfutils-default-yama-scope-0.188-3.f 1.3 MB/s | 16 kB 00:00 (21/154): elfutils-libelf-0.188-3.fc38.ppc64le. 17 MB/s | 205 kB 00:00 (22/154): elfutils-libs-0.188-3.fc38.ppc64le.rp 19 MB/s | 291 kB 00:00 (23/154): file-5.42-4.fc38.ppc64le.rpm 3.4 MB/s | 50 kB 00:00 (24/154): file-libs-5.42-4.fc38.ppc64le.rpm 37 MB/s | 688 kB 00:00 (25/154): findutils-4.9.0-2.fc38.ppc64le.rpm 26 MB/s | 530 kB 00:00 (26/154): gawk-5.1.1-4.fc38.ppc64le.rpm 32 MB/s | 1.0 MB 00:00 (27/154): gdbm-libs-1.23-2.fc38.ppc64le.rpm 3.3 MB/s | 62 kB 00:00 (28/154): gmp-6.2.1-3.fc38.ppc64le.rpm 18 MB/s | 304 kB 00:00 (29/154): grep-3.8-1.fc38.ppc64le.rpm 22 MB/s | 293 kB 00:00 (30/154): jansson-2.13.1-5.fc38.ppc64le.rpm 4.6 MB/s | 50 kB 00:00 (31/154): gzip-1.12-2.fc38.ppc64le.rpm 13 MB/s | 163 kB 00:00 (32/154): keyutils-libs-1.6.1-5.fc38.ppc64le.rp 3.5 MB/s | 33 kB 00:00 (33/154): krb5-libs-1.20.1-3.fc38.ppc64le.rpm 25 MB/s | 805 kB 00:00 (34/154): libacl-2.3.1-4.fc38.ppc64le.rpm 818 kB/s | 26 kB 00:00 (35/154): libarchive-3.6.1-3.fc38.ppc64le.rpm 11 MB/s | 464 kB 00:00 (36/154): libattr-2.5.1-5.fc38.ppc64le.rpm 905 kB/s | 19 kB 00:00 (37/154): libbrotli-1.0.9-9.fc38.ppc64le.rpm 14 MB/s | 345 kB 00:00 (38/154): libcap-2.48-5.fc38.ppc64le.rpm 7.2 MB/s | 73 kB 00:00 (39/154): libcap-ng-0.8.3-4.fc38.ppc64le.rpm 3.7 MB/s | 34 kB 00:00 (40/154): libcom_err-1.46.5-3.fc38.ppc64le.rpm 3.0 MB/s | 26 kB 00:00 (41/154): libcurl-7.87.0-1.fc38.ppc64le.rpm 25 MB/s | 334 kB 00:00 (42/154): libdb-5.3.28-54.fc38.ppc64le.rpm 29 MB/s | 842 kB 00:00 (43/154): libeconf-0.4.0-4.fc38.ppc64le.rpm 1.2 MB/s | 31 kB 00:00 (44/154): libevent-2.1.12-7.fc38.ppc64le.rpm 13 MB/s | 276 kB 00:00 (45/154): libffi-3.4.4-1.fc38.ppc64le.rpm 2.5 MB/s | 39 kB 00:00 (46/154): libidn2-2.3.4-1.fc38.ppc64le.rpm 9.0 MB/s | 157 kB 00:00 (47/154): libnghttp2-1.51.0-1.fc38.ppc64le.rpm 5.2 MB/s | 85 kB 00:00 (48/154): libnsl2-2.0.0-4.fc38.ppc64le.rpm 3.5 MB/s | 33 kB 00:00 (49/154): libpsl-0.21.1-6.fc38.ppc64le.rpm 6.6 MB/s | 67 kB 00:00 (50/154): libpkgconf-1.8.0-3.fc38.ppc64le.rpm 3.2 MB/s | 40 kB 00:00 (51/154): librtas-2.0.3-1.fc38.ppc64le.rpm 6.2 MB/s | 68 kB 00:00 (52/154): libsigsegv-2.14-3.fc38.ppc64le.rpm 3.1 MB/s | 28 kB 00:00 (53/154): libssh-0.10.4-2.fc38.ppc64le.rpm 19 MB/s | 236 kB 00:00 (54/154): libssh-config-0.10.4-2.fc38.noarch.rp 1.1 MB/s | 9.2 kB 00:00 (55/154): libtasn1-4.19.0-1.fc38.ppc64le.rpm 8.4 MB/s | 81 kB 00:00 (56/154): libtirpc-1.3.3-0.fc38.ppc64le.rpm 11 MB/s | 108 kB 00:00 (57/154): libunistring-1.0-2.fc38.ppc64le.rpm 35 MB/s | 575 kB 00:00 (58/154): libutempter-1.2.1-7.fc38.ppc64le.rpm 1.9 MB/s | 27 kB 00:00 (59/154): libverto-0.3.2-4.fc38.ppc64le.rpm 2.1 MB/s | 23 kB 00:00 (60/154): libxcrypt-4.4.33-5.fc38.ppc64le.rpm 12 MB/s | 133 kB 00:00 (61/154): libxml2-2.10.3-2.fc38.ppc64le.rpm 37 MB/s | 780 kB 00:00 (62/154): lua-libs-5.4.4-6.fc38.ppc64le.rpm 6.6 MB/s | 149 kB 00:00 (63/154): lz4-libs-1.9.3-5.fc38.ppc64le.rpm 7.2 MB/s | 90 kB 00:00 (64/154): mpfr-4.1.1-2.fc38.ppc64le.rpm 32 MB/s | 609 kB 00:00 (65/154): ncurses-base-6.3-5.20221126.fc38.noar 3.2 MB/s | 62 kB 00:00 (66/154): ncurses-libs-6.3-5.20221126.fc38.ppc6 18 MB/s | 374 kB 00:00 (67/154): nettle-3.8-2.fc38.ppc64le.rpm 30 MB/s | 443 kB 00:00 (68/154): openldap-2.6.3-1.fc38.ppc64le.rpm 18 MB/s | 288 kB 00:00 (69/154): openssl-libs-3.0.5-6.fc38.ppc64le.rpm 48 MB/s | 2.2 MB 00:00 (70/154): p11-kit-0.24.1-5.fc38.ppc64le.rpm 9.4 MB/s | 359 kB 00:00 (71/154): p11-kit-trust-0.24.1-5.fc38.ppc64le.r 4.3 MB/s | 150 kB 00:00 (72/154): pam-libs-1.5.2-15.fc38.ppc64le.rpm 4.8 MB/s | 64 kB 00:00 (73/154): patch-2.7.6-17.fc38.ppc64le.rpm 8.7 MB/s | 136 kB 00:00 (74/154): pam-1.5.2-15.fc38.ppc64le.rpm 25 MB/s | 569 kB 00:00 (75/154): pcre2-10.40-1.fc38.1.ppc64le.rpm 20 MB/s | 242 kB 00:00 (76/154): pcre2-syntax-10.40-1.fc38.1.noarch.rp 13 MB/s | 143 kB 00:00 (77/154): pkgconf-1.8.0-3.fc38.ppc64le.rpm 4.4 MB/s | 43 kB 00:00 (78/154): pkgconf-m4-1.8.0-3.fc38.noarch.rpm 1.5 MB/s | 15 kB 00:00 (79/154): pkgconf-pkg-config-1.8.0-3.fc38.ppc64 1.1 MB/s | 11 kB 00:00 (80/154): popt-1.19-1.fc38.ppc64le.rpm 6.7 MB/s | 64 kB 00:00 (81/154): readline-8.2-2.fc38.ppc64le.rpm 18 MB/s | 229 kB 00:00 (82/154): qt5-srpm-macros-5.15.7-1.fc38.noarch. 596 kB/s | 8.4 kB 00:00 (83/154): redhat-rpm-config-235-1.fc38.noarch.r 6.0 MB/s | 74 kB 00:00 (84/154): rpm-4.18.0-8.fc38.ppc64le.rpm 30 MB/s | 538 kB 00:00 (85/154): rpm-build-libs-4.18.0-8.fc38.ppc64le. 5.7 MB/s | 103 kB 00:00 (86/154): rpm-build-4.18.0-8.fc38.ppc64le.rpm 3.7 MB/s | 71 kB 00:00 (87/154): rpm-libs-4.18.0-8.fc38.ppc64le.rpm 25 MB/s | 355 kB 00:00 (88/154): rpm-sequoia-1.2.0-1.fc38.ppc64le.rpm 47 MB/s | 1.4 MB 00:00 (89/154): rpmautospec-rpm-macros-0.3.1-1.fc38.n 320 kB/s | 9.3 kB 00:00 (90/154): libgcc-13.0.0-0.4.fc38.ppc64le.rpm 820 kB/s | 88 kB 00:00 (91/154): ansible-srpm-macros-1-8.1.fc38.noarch 116 kB/s | 8.6 kB 00:00 (92/154): libgomp-13.0.0-0.4.fc38.ppc64le.rpm 1.8 MB/s | 314 kB 00:00 (93/154): libstdc++-13.0.0-0.4.fc38.ppc64le.rpm 4.3 MB/s | 932 kB 00:00 (94/154): basesystem-11-14.fc37.noarch.rpm 99 kB/s | 7.0 kB 00:00 (95/154): audit-libs-3.0.9-2.fc38.ppc64le.rpm 937 kB/s | 130 kB 00:00 (96/154): debugedit-5.0-5.fc37.ppc64le.rpm 2.1 MB/s | 80 kB 00:00 (97/154): crypto-policies-20221215-1.gita4c31a3 862 kB/s | 90 kB 00:00 (98/154): efi-srpm-macros-5-6.fc37.noarch.rpm 623 kB/s | 22 kB 00:00 (99/154): fedora-release-38-0.6.noarch.rpm 301 kB/s | 11 kB 00:00 (100/154): fedora-gpg-keys-38-0.3.noarch.rpm 1.7 MB/s | 125 kB 00:00 (101/154): fedora-release-common-38-0.6.noarch. 590 kB/s | 21 kB 00:00 (102/154): fedora-release-identity-basic-38-0.6 324 kB/s | 11 kB 00:00 (103/154): ca-certificates-2022.2.54-5.fc37.noa 3.2 MB/s | 829 kB 00:00 (104/154): fedora-repos-38-0.3.noarch.rpm 288 kB/s | 10 kB 00:00 (105/154): fedora-repos-rawhide-38-0.3.noarch.r 275 kB/s | 9.7 kB 00:00 (106/154): fonts-srpm-macros-2.0.5-10.fc38.noar 737 kB/s | 26 kB 00:00 (107/154): fpc-srpm-macros-1.3-6.fc37.noarch.rp 220 kB/s | 7.7 kB 00:00 (108/154): filesystem-3.18-2.fc37.ppc64le.rpm 13 MB/s | 1.1 MB 00:00 (109/154): ghc-srpm-macros-1.5.0-7.fc37.noarch. 223 kB/s | 7.8 kB 00:00 (110/154): glibc-common-2.36.9000-19.fc38.ppc64 4.2 MB/s | 322 kB 00:00 (111/154): 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(154/154): zstd-1.5.2-3.fc37.ppc64le.rpm 11 MB/s | 466 kB 00:00 -------------------------------------------------------------------------------- Total 20 MB/s | 57 MB 00:02 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.ppc64le 1/1 Preparing : 1/1 Installing : libgcc-13.0.0-0.4.fc38.ppc64le 1/154 Running scriptlet: libgcc-13.0.0-0.4.fc38.ppc64le 1/154 Installing : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/154 Running scriptlet: crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/154 Installing : fedora-release-identity-basic-38-0.6.noarch 3/154 Installing : tzdata-2022g-1.fc38.noarch 4/154 Installing : rust-srpm-macros-23-1.fc38.noarch 5/154 Installing : publicsuffix-list-dafsa-20221208-1.fc38.noarch 6/154 Installing : perl-srpm-macros-1-47.fc38.noarch 7/154 Installing : package-notes-srpm-macros-0.5-6.fc38.noarch 8/154 Installing : openblas-srpm-macros-2-12.fc37.noarch 9/154 Installing : ocaml-srpm-macros-7-2.fc37.noarch 10/154 Installing : nim-srpm-macros-3-7.fc37.noarch 11/154 Installing : kernel-srpm-macros-1.0-15.fc37.noarch 12/154 Installing : gnat-srpm-macros-4-16.fc37.noarch 13/154 Installing : 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go-srpm-macros-3.2.0-1.fc38.noarch 148/154 Installing : python-srpm-macros-3.11-6.fc38.noarch 149/154 Installing : redhat-rpm-config-235-1.fc38.noarch 150/154 Installing : rpm-build-4.18.0-8.fc38.ppc64le 151/154 Installing : util-linux-2.38.1-3.fc38.ppc64le 152/154 Installing : which-2.21-36.fc38.ppc64le 153/154 Installing : info-7.0.1-1.fc38.ppc64le 154/154 Running scriptlet: filesystem-3.18-2.fc37.ppc64le 154/154 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 154/154 Running scriptlet: authselect-libs-1.4.2-1.fc38.ppc64le 154/154 Running scriptlet: rpm-4.18.0-8.fc38.ppc64le 154/154 Running scriptlet: info-7.0.1-1.fc38.ppc64le 154/154 Verifying : alternatives-1.21-1.fc38.ppc64le 1/154 Verifying : authselect-1.4.2-1.fc38.ppc64le 2/154 Verifying : authselect-libs-1.4.2-1.fc38.ppc64le 3/154 Verifying : bash-5.2.9-3.fc38.ppc64le 4/154 Verifying : binutils-2.39-6.fc38.ppc64le 5/154 Verifying : binutils-gold-2.39-6.fc38.ppc64le 6/154 Verifying : bzip2-1.0.8-12.fc38.ppc64le 7/154 Verifying : bzip2-libs-1.0.8-12.fc38.ppc64le 8/154 Verifying : coreutils-9.1-8.fc38.ppc64le 9/154 Verifying : coreutils-common-9.1-8.fc38.ppc64le 10/154 Verifying : cpio-2.13-13.fc38.ppc64le 11/154 Verifying : cracklib-2.9.7-30.fc38.ppc64le 12/154 Verifying : curl-7.87.0-1.fc38.ppc64le 13/154 Verifying : cyrus-sasl-lib-2.1.28-8.fc38.ppc64le 14/154 Verifying : diffutils-3.8-3.fc38.ppc64le 15/154 Verifying : dwz-0.15-1.fc38.ppc64le 16/154 Verifying : ed-1.18-2.fc38.ppc64le 17/154 Verifying : elfutils-0.188-3.fc38.ppc64le 18/154 Verifying : elfutils-debuginfod-client-0.188-3.fc38.ppc64le 19/154 Verifying : elfutils-default-yama-scope-0.188-3.fc38.noarch 20/154 Verifying : elfutils-libelf-0.188-3.fc38.ppc64le 21/154 Verifying : elfutils-libs-0.188-3.fc38.ppc64le 22/154 Verifying : file-5.42-4.fc38.ppc64le 23/154 Verifying : file-libs-5.42-4.fc38.ppc64le 24/154 Verifying : findutils-1:4.9.0-2.fc38.ppc64le 25/154 Verifying : gawk-5.1.1-4.fc38.ppc64le 26/154 Verifying : gdbm-libs-1:1.23-2.fc38.ppc64le 27/154 Verifying : gmp-1:6.2.1-3.fc38.ppc64le 28/154 Verifying : grep-3.8-1.fc38.ppc64le 29/154 Verifying : gzip-1.12-2.fc38.ppc64le 30/154 Verifying : jansson-2.13.1-5.fc38.ppc64le 31/154 Verifying : keyutils-libs-1.6.1-5.fc38.ppc64le 32/154 Verifying : krb5-libs-1.20.1-3.fc38.ppc64le 33/154 Verifying : libacl-2.3.1-4.fc38.ppc64le 34/154 Verifying : libarchive-3.6.1-3.fc38.ppc64le 35/154 Verifying : libattr-2.5.1-5.fc38.ppc64le 36/154 Verifying : libbrotli-1.0.9-9.fc38.ppc64le 37/154 Verifying : libcap-2.48-5.fc38.ppc64le 38/154 Verifying : libcap-ng-0.8.3-4.fc38.ppc64le 39/154 Verifying : libcom_err-1.46.5-3.fc38.ppc64le 40/154 Verifying : libcurl-7.87.0-1.fc38.ppc64le 41/154 Verifying : libdb-5.3.28-54.fc38.ppc64le 42/154 Verifying : libeconf-0.4.0-4.fc38.ppc64le 43/154 Verifying : libevent-2.1.12-7.fc38.ppc64le 44/154 Verifying : libffi-3.4.4-1.fc38.ppc64le 45/154 Verifying : libidn2-2.3.4-1.fc38.ppc64le 46/154 Verifying : libnghttp2-1.51.0-1.fc38.ppc64le 47/154 Verifying : libnsl2-2.0.0-4.fc38.ppc64le 48/154 Verifying : libpkgconf-1.8.0-3.fc38.ppc64le 49/154 Verifying : libpsl-0.21.1-6.fc38.ppc64le 50/154 Verifying : librtas-2.0.3-1.fc38.ppc64le 51/154 Verifying : libsigsegv-2.14-3.fc38.ppc64le 52/154 Verifying : libssh-0.10.4-2.fc38.ppc64le 53/154 Verifying : libssh-config-0.10.4-2.fc38.noarch 54/154 Verifying : libtasn1-4.19.0-1.fc38.ppc64le 55/154 Verifying : libtirpc-1.3.3-0.fc38.ppc64le 56/154 Verifying : libunistring-1.0-2.fc38.ppc64le 57/154 Verifying : libutempter-1.2.1-7.fc38.ppc64le 58/154 Verifying : libverto-0.3.2-4.fc38.ppc64le 59/154 Verifying : libxcrypt-4.4.33-5.fc38.ppc64le 60/154 Verifying : libxml2-2.10.3-2.fc38.ppc64le 61/154 Verifying : lua-libs-5.4.4-6.fc38.ppc64le 62/154 Verifying : lz4-libs-1.9.3-5.fc38.ppc64le 63/154 Verifying : mpfr-4.1.1-2.fc38.ppc64le 64/154 Verifying : ncurses-base-6.3-5.20221126.fc38.noarch 65/154 Verifying : ncurses-libs-6.3-5.20221126.fc38.ppc64le 66/154 Verifying : nettle-3.8-2.fc38.ppc64le 67/154 Verifying : openldap-2.6.3-1.fc38.ppc64le 68/154 Verifying : openssl-libs-1:3.0.5-6.fc38.ppc64le 69/154 Verifying : p11-kit-0.24.1-5.fc38.ppc64le 70/154 Verifying : p11-kit-trust-0.24.1-5.fc38.ppc64le 71/154 Verifying : pam-1.5.2-15.fc38.ppc64le 72/154 Verifying : pam-libs-1.5.2-15.fc38.ppc64le 73/154 Verifying : patch-2.7.6-17.fc38.ppc64le 74/154 Verifying : pcre2-10.40-1.fc38.1.ppc64le 75/154 Verifying : pcre2-syntax-10.40-1.fc38.1.noarch 76/154 Verifying : pkgconf-1.8.0-3.fc38.ppc64le 77/154 Verifying : pkgconf-m4-1.8.0-3.fc38.noarch 78/154 Verifying : pkgconf-pkg-config-1.8.0-3.fc38.ppc64le 79/154 Verifying : popt-1.19-1.fc38.ppc64le 80/154 Verifying : qt5-srpm-macros-5.15.7-1.fc38.noarch 81/154 Verifying : readline-8.2-2.fc38.ppc64le 82/154 Verifying : redhat-rpm-config-235-1.fc38.noarch 83/154 Verifying : rpm-4.18.0-8.fc38.ppc64le 84/154 Verifying : rpm-build-4.18.0-8.fc38.ppc64le 85/154 Verifying : rpm-build-libs-4.18.0-8.fc38.ppc64le 86/154 Verifying : rpm-libs-4.18.0-8.fc38.ppc64le 87/154 Verifying : rpm-sequoia-1.2.0-1.fc38.ppc64le 88/154 Verifying : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch 89/154 Verifying : libgcc-13.0.0-0.4.fc38.ppc64le 90/154 Verifying : libgomp-13.0.0-0.4.fc38.ppc64le 91/154 Verifying : libstdc++-13.0.0-0.4.fc38.ppc64le 92/154 Verifying : ansible-srpm-macros-1-8.1.fc38.noarch 93/154 Verifying : audit-libs-3.0.9-2.fc38.ppc64le 94/154 Verifying : basesystem-11-14.fc37.noarch 95/154 Verifying : ca-certificates-2022.2.54-5.fc37.noarch 96/154 Verifying : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 97/154 Verifying : debugedit-5.0-5.fc37.ppc64le 98/154 Verifying : efi-srpm-macros-5-6.fc37.noarch 99/154 Verifying : fedora-gpg-keys-38-0.3.noarch 100/154 Verifying : fedora-release-38-0.6.noarch 101/154 Verifying : fedora-release-common-38-0.6.noarch 102/154 Verifying : fedora-release-identity-basic-38-0.6.noarch 103/154 Verifying : fedora-repos-38-0.3.noarch 104/154 Verifying : fedora-repos-rawhide-38-0.3.noarch 105/154 Verifying : filesystem-3.18-2.fc37.ppc64le 106/154 Verifying : fonts-srpm-macros-1:2.0.5-10.fc38.noarch 107/154 Verifying : fpc-srpm-macros-1.3-6.fc37.noarch 108/154 Verifying : gdb-minimal-12.1-10.fc38.ppc64le 109/154 Verifying : ghc-srpm-macros-1.5.0-7.fc37.noarch 110/154 Verifying : glibc-2.36.9000-19.fc38.ppc64le 111/154 Verifying : glibc-common-2.36.9000-19.fc38.ppc64le 112/154 Verifying : glibc-gconv-extra-2.36.9000-19.fc38.ppc64le 113/154 Verifying : glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le 114/154 Verifying : gnat-srpm-macros-4-16.fc37.noarch 115/154 Verifying : go-srpm-macros-3.2.0-1.fc38.noarch 116/154 Verifying : info-7.0.1-1.fc38.ppc64le 117/154 Verifying : kernel-srpm-macros-1.0-15.fc37.noarch 118/154 Verifying : libblkid-2.38.1-3.fc38.ppc64le 119/154 Verifying : libfdisk-2.38.1-3.fc38.ppc64le 120/154 Verifying : libmount-2.38.1-3.fc38.ppc64le 121/154 Verifying : libpwquality-1.4.5-1.fc38.ppc64le 122/154 Verifying : libselinux-3.5-0.rc1.1.fc38.ppc64le 123/154 Verifying : libsemanage-3.5-0.rc1.1.fc38.ppc64le 124/154 Verifying : libsepol-3.5-0.rc1.1.fc38.ppc64le 125/154 Verifying : libsmartcols-2.38.1-3.fc38.ppc64le 126/154 Verifying : libuuid-2.38.1-3.fc38.ppc64le 127/154 Verifying : libzstd-1.5.2-3.fc37.ppc64le 128/154 Verifying : lua-srpm-macros-1-7.fc37.noarch 129/154 Verifying : nim-srpm-macros-3-7.fc37.noarch 130/154 Verifying : ocaml-srpm-macros-7-2.fc37.noarch 131/154 Verifying : openblas-srpm-macros-2-12.fc37.noarch 132/154 Verifying : package-notes-srpm-macros-0.5-6.fc38.noarch 133/154 Verifying : perl-srpm-macros-1-47.fc38.noarch 134/154 Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 135/154 Verifying : python-srpm-macros-3.11-6.fc38.noarch 136/154 Verifying : rust-srpm-macros-23-1.fc38.noarch 137/154 Verifying : sed-4.8-11.fc37.ppc64le 138/154 Verifying : setup-2.14.3-1.fc38.noarch 139/154 Verifying : shadow-utils-2:4.13-3.fc38.ppc64le 140/154 Verifying : sqlite-libs-3.40.0-1.fc38.ppc64le 141/154 Verifying : systemd-libs-252.4-598.fc38.ppc64le 142/154 Verifying : tar-2:1.34-5.fc38.ppc64le 143/154 Verifying : tzdata-2022g-1.fc38.noarch 144/154 Verifying : unzip-6.0-58.fc38.ppc64le 145/154 Verifying : util-linux-2.38.1-3.fc38.ppc64le 146/154 Verifying : util-linux-core-2.38.1-3.fc38.ppc64le 147/154 Verifying : which-2.21-36.fc38.ppc64le 148/154 Verifying : xxhash-libs-0.8.1-3.fc37.ppc64le 149/154 Verifying : xz-5.2.9-1.fc38.ppc64le 150/154 Verifying : xz-libs-5.2.9-1.fc38.ppc64le 151/154 Verifying : zip-3.0-35.fc38.ppc64le 152/154 Verifying : zlib-1.2.13-1.fc38.ppc64le 153/154 Verifying : zstd-1.5.2-3.fc37.ppc64le 154/154 Installed: alternatives-1.21-1.fc38.ppc64le ansible-srpm-macros-1-8.1.fc38.noarch audit-libs-3.0.9-2.fc38.ppc64le authselect-1.4.2-1.fc38.ppc64le authselect-libs-1.4.2-1.fc38.ppc64le basesystem-11-14.fc37.noarch bash-5.2.9-3.fc38.ppc64le binutils-2.39-6.fc38.ppc64le binutils-gold-2.39-6.fc38.ppc64le bzip2-1.0.8-12.fc38.ppc64le bzip2-libs-1.0.8-12.fc38.ppc64le ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-8.fc38.ppc64le coreutils-common-9.1-8.fc38.ppc64le cpio-2.13-13.fc38.ppc64le cracklib-2.9.7-30.fc38.ppc64le crypto-policies-20221215-1.gita4c31a3.fc38.noarch curl-7.87.0-1.fc38.ppc64le cyrus-sasl-lib-2.1.28-8.fc38.ppc64le debugedit-5.0-5.fc37.ppc64le diffutils-3.8-3.fc38.ppc64le dwz-0.15-1.fc38.ppc64le ed-1.18-2.fc38.ppc64le efi-srpm-macros-5-6.fc37.noarch elfutils-0.188-3.fc38.ppc64le elfutils-debuginfod-client-0.188-3.fc38.ppc64le elfutils-default-yama-scope-0.188-3.fc38.noarch elfutils-libelf-0.188-3.fc38.ppc64le elfutils-libs-0.188-3.fc38.ppc64le fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.6.noarch fedora-release-common-38-0.6.noarch fedora-release-identity-basic-38-0.6.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-5.42-4.fc38.ppc64le file-libs-5.42-4.fc38.ppc64le filesystem-3.18-2.fc37.ppc64le findutils-1:4.9.0-2.fc38.ppc64le fonts-srpm-macros-1:2.0.5-10.fc38.noarch fpc-srpm-macros-1.3-6.fc37.noarch gawk-5.1.1-4.fc38.ppc64le gdb-minimal-12.1-10.fc38.ppc64le gdbm-libs-1:1.23-2.fc38.ppc64le ghc-srpm-macros-1.5.0-7.fc37.noarch glibc-2.36.9000-19.fc38.ppc64le glibc-common-2.36.9000-19.fc38.ppc64le glibc-gconv-extra-2.36.9000-19.fc38.ppc64le glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le gmp-1:6.2.1-3.fc38.ppc64le gnat-srpm-macros-4-16.fc37.noarch go-srpm-macros-3.2.0-1.fc38.noarch grep-3.8-1.fc38.ppc64le gzip-1.12-2.fc38.ppc64le info-7.0.1-1.fc38.ppc64le jansson-2.13.1-5.fc38.ppc64le kernel-srpm-macros-1.0-15.fc37.noarch keyutils-libs-1.6.1-5.fc38.ppc64le krb5-libs-1.20.1-3.fc38.ppc64le libacl-2.3.1-4.fc38.ppc64le libarchive-3.6.1-3.fc38.ppc64le libattr-2.5.1-5.fc38.ppc64le libblkid-2.38.1-3.fc38.ppc64le libbrotli-1.0.9-9.fc38.ppc64le libcap-2.48-5.fc38.ppc64le libcap-ng-0.8.3-4.fc38.ppc64le libcom_err-1.46.5-3.fc38.ppc64le libcurl-7.87.0-1.fc38.ppc64le libdb-5.3.28-54.fc38.ppc64le libeconf-0.4.0-4.fc38.ppc64le libevent-2.1.12-7.fc38.ppc64le libfdisk-2.38.1-3.fc38.ppc64le libffi-3.4.4-1.fc38.ppc64le libgcc-13.0.0-0.4.fc38.ppc64le libgomp-13.0.0-0.4.fc38.ppc64le libidn2-2.3.4-1.fc38.ppc64le libmount-2.38.1-3.fc38.ppc64le libnghttp2-1.51.0-1.fc38.ppc64le libnsl2-2.0.0-4.fc38.ppc64le libpkgconf-1.8.0-3.fc38.ppc64le libpsl-0.21.1-6.fc38.ppc64le libpwquality-1.4.5-1.fc38.ppc64le librtas-2.0.3-1.fc38.ppc64le libselinux-3.5-0.rc1.1.fc38.ppc64le libsemanage-3.5-0.rc1.1.fc38.ppc64le libsepol-3.5-0.rc1.1.fc38.ppc64le libsigsegv-2.14-3.fc38.ppc64le libsmartcols-2.38.1-3.fc38.ppc64le libssh-0.10.4-2.fc38.ppc64le libssh-config-0.10.4-2.fc38.noarch libstdc++-13.0.0-0.4.fc38.ppc64le libtasn1-4.19.0-1.fc38.ppc64le libtirpc-1.3.3-0.fc38.ppc64le libunistring-1.0-2.fc38.ppc64le libutempter-1.2.1-7.fc38.ppc64le libuuid-2.38.1-3.fc38.ppc64le libverto-0.3.2-4.fc38.ppc64le libxcrypt-4.4.33-5.fc38.ppc64le libxml2-2.10.3-2.fc38.ppc64le libzstd-1.5.2-3.fc37.ppc64le lua-libs-5.4.4-6.fc38.ppc64le lua-srpm-macros-1-7.fc37.noarch lz4-libs-1.9.3-5.fc38.ppc64le mpfr-4.1.1-2.fc38.ppc64le ncurses-base-6.3-5.20221126.fc38.noarch ncurses-libs-6.3-5.20221126.fc38.ppc64le nettle-3.8-2.fc38.ppc64le nim-srpm-macros-3-7.fc37.noarch ocaml-srpm-macros-7-2.fc37.noarch openblas-srpm-macros-2-12.fc37.noarch openldap-2.6.3-1.fc38.ppc64le openssl-libs-1:3.0.5-6.fc38.ppc64le p11-kit-0.24.1-5.fc38.ppc64le p11-kit-trust-0.24.1-5.fc38.ppc64le package-notes-srpm-macros-0.5-6.fc38.noarch pam-1.5.2-15.fc38.ppc64le pam-libs-1.5.2-15.fc38.ppc64le patch-2.7.6-17.fc38.ppc64le pcre2-10.40-1.fc38.1.ppc64le pcre2-syntax-10.40-1.fc38.1.noarch perl-srpm-macros-1-47.fc38.noarch pkgconf-1.8.0-3.fc38.ppc64le pkgconf-m4-1.8.0-3.fc38.noarch pkgconf-pkg-config-1.8.0-3.fc38.ppc64le popt-1.19-1.fc38.ppc64le publicsuffix-list-dafsa-20221208-1.fc38.noarch python-srpm-macros-3.11-6.fc38.noarch qt5-srpm-macros-5.15.7-1.fc38.noarch readline-8.2-2.fc38.ppc64le redhat-rpm-config-235-1.fc38.noarch rpm-4.18.0-8.fc38.ppc64le rpm-build-4.18.0-8.fc38.ppc64le rpm-build-libs-4.18.0-8.fc38.ppc64le rpm-libs-4.18.0-8.fc38.ppc64le rpm-sequoia-1.2.0-1.fc38.ppc64le rpmautospec-rpm-macros-0.3.1-1.fc38.noarch rust-srpm-macros-23-1.fc38.noarch sed-4.8-11.fc37.ppc64le setup-2.14.3-1.fc38.noarch shadow-utils-2:4.13-3.fc38.ppc64le sqlite-libs-3.40.0-1.fc38.ppc64le systemd-libs-252.4-598.fc38.ppc64le tar-2:1.34-5.fc38.ppc64le tzdata-2022g-1.fc38.noarch unzip-6.0-58.fc38.ppc64le util-linux-2.38.1-3.fc38.ppc64le util-linux-core-2.38.1-3.fc38.ppc64le which-2.21-36.fc38.ppc64le xxhash-libs-0.8.1-3.fc37.ppc64le xz-5.2.9-1.fc38.ppc64le xz-libs-5.2.9-1.fc38.ppc64le zip-3.0-35.fc38.ppc64le zlib-1.2.13-1.fc38.ppc64le zstd-1.5.2-3.fc37.ppc64le Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: rust-srpm-macros-23-1.fc38.noarch util-linux-core-2.38.1-3.fc38.ppc64le openssl-libs-3.0.5-6.fc38.ppc64le libstdc++-13.0.0-0.4.fc38.ppc64le libbrotli-1.0.9-9.fc38.ppc64le tar-1.34-5.fc38.ppc64le libnsl2-2.0.0-4.fc38.ppc64le pkgconf-m4-1.8.0-3.fc38.noarch gnat-srpm-macros-4-16.fc37.noarch glibc-common-2.36.9000-19.fc38.ppc64le perl-srpm-macros-1-47.fc38.noarch cracklib-2.9.7-30.fc38.ppc64le sqlite-libs-3.40.0-1.fc38.ppc64le libcap-ng-0.8.3-4.fc38.ppc64le package-notes-srpm-macros-0.5-6.fc38.noarch fedora-gpg-keys-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch elfutils-0.188-3.fc38.ppc64le cyrus-sasl-lib-2.1.28-8.fc38.ppc64le libacl-2.3.1-4.fc38.ppc64le pam-libs-1.5.2-15.fc38.ppc64le libcurl-7.87.0-1.fc38.ppc64le kernel-srpm-macros-1.0-15.fc37.noarch diffutils-3.8-3.fc38.ppc64le go-srpm-macros-3.2.0-1.fc38.noarch libattr-2.5.1-5.fc38.ppc64le libssh-0.10.4-2.fc38.ppc64le binutils-2.39-6.fc38.ppc64le libselinux-3.5-0.rc1.1.fc38.ppc64le alternatives-1.21-1.fc38.ppc64le libeconf-0.4.0-4.fc38.ppc64le pkgconf-pkg-config-1.8.0-3.fc38.ppc64le libsepol-3.5-0.rc1.1.fc38.ppc64le efi-srpm-macros-5-6.fc37.noarch elfutils-debuginfod-client-0.188-3.fc38.ppc64le elfutils-libelf-0.188-3.fc38.ppc64le rpm-4.18.0-8.fc38.ppc64le libarchive-3.6.1-3.fc38.ppc64le mpfr-4.1.1-2.fc38.ppc64le libpwquality-1.4.5-1.fc38.ppc64le util-linux-2.38.1-3.fc38.ppc64le libssh-config-0.10.4-2.fc38.noarch libcap-2.48-5.fc38.ppc64le sed-4.8-11.fc37.ppc64le pam-1.5.2-15.fc38.ppc64le rpm-sequoia-1.2.0-1.fc38.ppc64le binutils-gold-2.39-6.fc38.ppc64le libsmartcols-2.38.1-3.fc38.ppc64le ghc-srpm-macros-1.5.0-7.fc37.noarch ncurses-libs-6.3-5.20221126.fc38.ppc64le glibc-gconv-extra-2.36.9000-19.fc38.ppc64le bash-5.2.9-3.fc38.ppc64le libtirpc-1.3.3-0.fc38.ppc64le elfutils-libs-0.188-3.fc38.ppc64le glibc-2.36.9000-19.fc38.ppc64le ca-certificates-2022.2.54-5.fc37.noarch xxhash-libs-0.8.1-3.fc37.ppc64le libgcc-13.0.0-0.4.fc38.ppc64le rpm-libs-4.18.0-8.fc38.ppc64le coreutils-common-9.1-8.fc38.ppc64le libutempter-1.2.1-7.fc38.ppc64le glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le file-libs-5.42-4.fc38.ppc64le coreutils-9.1-8.fc38.ppc64le lz4-libs-1.9.3-5.fc38.ppc64le zlib-1.2.13-1.fc38.ppc64le ocaml-srpm-macros-7-2.fc37.noarch basesystem-11-14.fc37.noarch lua-libs-5.4.4-6.fc38.ppc64le librtas-2.0.3-1.fc38.ppc64le p11-kit-trust-0.24.1-5.fc38.ppc64le grep-3.8-1.fc38.ppc64le popt-1.19-1.fc38.ppc64le pkgconf-1.8.0-3.fc38.ppc64le libverto-0.3.2-4.fc38.ppc64le libdb-5.3.28-54.fc38.ppc64le libpsl-0.21.1-6.fc38.ppc64le cpio-2.13-13.fc38.ppc64le nim-srpm-macros-3-7.fc37.noarch libgomp-13.0.0-0.4.fc38.ppc64le keyutils-libs-1.6.1-5.fc38.ppc64le authselect-1.4.2-1.fc38.ppc64le qt5-srpm-macros-5.15.7-1.fc38.noarch bzip2-1.0.8-12.fc38.ppc64le libsemanage-3.5-0.rc1.1.fc38.ppc64le python-srpm-macros-3.11-6.fc38.noarch file-5.42-4.fc38.ppc64le libffi-3.4.4-1.fc38.ppc64le which-2.21-36.fc38.ppc64le elfutils-default-yama-scope-0.188-3.fc38.noarch libsigsegv-2.14-3.fc38.ppc64le gawk-5.1.1-4.fc38.ppc64le setup-2.14.3-1.fc38.noarch filesystem-3.18-2.fc37.ppc64le readline-8.2-2.fc38.ppc64le audit-libs-3.0.9-2.fc38.ppc64le openldap-2.6.3-1.fc38.ppc64le zip-3.0-35.fc38.ppc64le libmount-2.38.1-3.fc38.ppc64le openblas-srpm-macros-2-12.fc37.noarch ncurses-base-6.3-5.20221126.fc38.noarch gdb-minimal-12.1-10.fc38.ppc64le fedora-repos-38-0.3.noarch pcre2-10.40-1.fc38.1.ppc64le dwz-0.15-1.fc38.ppc64le zstd-1.5.2-3.fc37.ppc64le authselect-libs-1.4.2-1.fc38.ppc64le libfdisk-2.38.1-3.fc38.ppc64le libtasn1-4.19.0-1.fc38.ppc64le gmp-6.2.1-3.fc38.ppc64le rpmautospec-rpm-macros-0.3.1-1.fc38.noarch libidn2-2.3.4-1.fc38.ppc64le krb5-libs-1.20.1-3.fc38.ppc64le shadow-utils-4.13-3.fc38.ppc64le bzip2-libs-1.0.8-12.fc38.ppc64le libblkid-2.38.1-3.fc38.ppc64le libuuid-2.38.1-3.fc38.ppc64le fedora-release-common-38-0.6.noarch p11-kit-0.24.1-5.fc38.ppc64le tzdata-2022g-1.fc38.noarch fonts-srpm-macros-2.0.5-10.fc38.noarch libzstd-1.5.2-3.fc37.ppc64le unzip-6.0-58.fc38.ppc64le pcre2-syntax-10.40-1.fc38.1.noarch patch-2.7.6-17.fc38.ppc64le jansson-2.13.1-5.fc38.ppc64le libpkgconf-1.8.0-3.fc38.ppc64le ansible-srpm-macros-1-8.1.fc38.noarch debugedit-5.0-5.fc37.ppc64le libunistring-1.0-2.fc38.ppc64le ed-1.18-2.fc38.ppc64le lua-srpm-macros-1-7.fc37.noarch curl-7.87.0-1.fc38.ppc64le xz-5.2.9-1.fc38.ppc64le crypto-policies-20221215-1.gita4c31a3.fc38.noarch libnghttp2-1.51.0-1.fc38.ppc64le publicsuffix-list-dafsa-20221208-1.fc38.noarch gzip-1.12-2.fc38.ppc64le rpm-build-4.18.0-8.fc38.ppc64le fedora-release-38-0.6.noarch rpm-build-libs-4.18.0-8.fc38.ppc64le redhat-rpm-config-235-1.fc38.noarch gpg-pubkey-5323552a-6112bcdc libevent-2.1.12-7.fc38.ppc64le libxcrypt-4.4.33-5.fc38.ppc64le gpg-pubkey-eb10b464-6202d9c6 libcom_err-1.46.5-3.fc38.ppc64le nettle-3.8-2.fc38.ppc64le gdbm-libs-1.23-2.fc38.ppc64le info-7.0.1-1.fc38.ppc64le fedora-release-identity-basic-38-0.6.noarch xz-libs-5.2.9-1.fc38.ppc64le systemd-libs-252.4-598.fc38.ppc64le libxml2-2.10.3-2.fc38.ppc64le fpc-srpm-macros-1.3-6.fc37.noarch findutils-4.9.0-2.fc38.ppc64le Start: buildsrpm Start: rpmbuild -bs Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1660521600 Wrote: /builddir/build/SRPMS/samtools-1.15.1-1.fc38.src.rpm Finish: rpmbuild -bs cp: ‘var/lib/mock/fedora-rawhide-ppc64le-1672293995.574551/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-ppc64le-1672293995.574551/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-ppc64le-1672293995.574551/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-ppc64le-1672293995.574551/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-j75lkvd0/samtools/samtools.spec) Config(child) 2 minutes 37 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=115200): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/samtools-1.15.1-1.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1672293995.574551 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/samtools-1.15.1-1.fc38.src.rpm) Config(fedora-rawhide-ppc64le) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1672293995.574551/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1672293995.574551/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1672293995.574551/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 11 kB/s | 3.0 kB 00:00 Additional repo https_jakub_fedorapeople_org_fe 9.7 kB/s | 3.0 kB 00:00 fedora 21 kB/s | 6.7 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for samtools-1.15.1-1.fc38.src.rpm Start: build setup for samtools-1.15.1-1.fc38.src.rpm Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1660521600 Wrote: /builddir/build/SRPMS/samtools-1.15.1-1.fc38.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 11 kB/s | 3.0 kB 00:00 Copr repository 29 MB/s | 38 MB 00:01 Additional repo https_jakub_fedorapeople_org_fe 9.9 kB/s | 3.0 kB 00:00 fedora 25 kB/s | 6.7 kB 00:00 Dependencies resolved. ============================================================================================================= Package Arch Version Repository Size ============================================================================================================= Installing: gcc ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 30 M htslib-devel ppc64le 1.15.1-1.fc38 copr_base 100 k htslib-tools ppc64le 1.15.1-1.fc38 copr_base 615 k make ppc64le 1:4.3-11.fc38 copr_base 549 k ncurses-devel ppc64le 6.3-5.20221126.fc38 copr_base 522 k perl-FindBin noarch 1.53-492.fc38 copr_base 17 k perl-Getopt-Long noarch 1:2.54-1.fc38 fedora 60 k perl-interpreter ppc64le 4:5.36.0-492.fc38 copr_base 76 k perl-lib ppc64le 0.65-492.fc38 copr_base 18 k zlib-devel ppc64le 1.2.13-1.fc38 fedora 45 k Installing dependencies: annobin-docs noarch 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 93 k annobin-plugin-gcc ppc64le 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 890 k cpp ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 9.8 M gc ppc64le 8.2.2-1.fc38 copr_base 122 k gcc-plugin-annobin ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 32 k glibc-devel ppc64le 2.36.9000-19.fc38 fedora 546 k groff-base ppc64le 1.22.4-10.fc38 copr_base 1.1 M guile22 ppc64le 2.2.7-6.fc38 copr_base 6.5 M htslib ppc64le 1.15.1-1.fc38 copr_base 558 k kernel-headers ppc64le 6.1.0-1.fc38 fedora 1.5 M libasan ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 477 k libatomic ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 19 k libmpc ppc64le 1.2.1-5.fc38 copr_base 85 k libtool-ltdl ppc64le 2.4.7-3.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 41 k libubsan ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 234 k libxcrypt-devel ppc64le 4.4.33-5.fc38 copr_base 31 k ncurses ppc64le 6.3-5.20221126.fc38 copr_base 416 k ncurses-c++-libs ppc64le 6.3-5.20221126.fc38 copr_base 39 k perl-Carp noarch 1.52-489.fc37 fedora 29 k perl-Class-Struct noarch 0.66-492.fc38 copr_base 26 k perl-DynaLoader ppc64le 1.52-492.fc38 copr_base 29 k perl-Encode ppc64le 4:3.19-492.fc38 copr_base 1.7 M perl-Errno ppc64le 1.36-492.fc38 copr_base 18 k perl-Exporter noarch 5.77-489.fc37 fedora 31 k perl-Fcntl ppc64le 1.15-492.fc38 copr_base 25 k perl-File-Basename noarch 2.85-492.fc38 copr_base 21 k perl-File-Path noarch 2.18-489.fc37 fedora 35 k perl-File-Temp noarch 1:0.231.100-489.fc37 fedora 59 k perl-File-stat noarch 1.12-492.fc38 copr_base 21 k perl-Getopt-Std noarch 1.13-492.fc38 copr_base 19 k perl-HTTP-Tiny noarch 0.082-1.fc37 fedora 55 k perl-IO ppc64le 1.50-492.fc38 copr_base 91 k perl-IPC-Open3 noarch 1.22-492.fc38 copr_base 26 k perl-MIME-Base64 ppc64le 3.16-489.fc38 copr_base 31 k perl-POSIX ppc64le 2.03-492.fc38 copr_base 123 k perl-PathTools ppc64le 3.84-489.fc38 copr_base 83 k perl-Pod-Escapes noarch 1:1.07-489.fc37 fedora 20 k perl-Pod-Perldoc noarch 3.28.01-490.fc37 fedora 90 k perl-Pod-Simple noarch 1:3.43-490.fc37 fedora 225 k perl-Pod-Usage noarch 4:2.03-3.fc37 fedora 40 k perl-Scalar-List-Utils ppc64le 5:1.63-489.fc38 copr_base 75 k perl-SelectSaver noarch 1.02-492.fc38 copr_base 15 k perl-Socket ppc64le 4:2.036-1.fc38 copr_base 57 k perl-Storable ppc64le 1:3.26-489.fc38 copr_base 101 k perl-Symbol noarch 1.09-492.fc38 copr_base 18 k perl-Term-ANSIColor noarch 5.01-490.fc37 fedora 48 k perl-Term-Cap noarch 1.17-489.fc37 fedora 22 k perl-Text-ParseWords noarch 3.31-489.fc37 fedora 16 k perl-Text-Tabs+Wrap noarch 2021.0814-489.fc37 fedora 22 k perl-Time-Local noarch 2:1.300-489.fc37 fedora 33 k perl-constant noarch 1.33-490.fc37 fedora 23 k perl-if noarch 0.61.000-492.fc38 copr_base 17 k perl-libs ppc64le 4:5.36.0-492.fc38 copr_base 2.2 M perl-mro ppc64le 1.26-492.fc38 copr_base 33 k perl-overload noarch 1.35-492.fc38 copr_base 49 k perl-overloading noarch 0.02-492.fc38 copr_base 16 k perl-parent noarch 1:0.239-1.fc38 fedora 14 k perl-podlators noarch 1:5.00-1.fc38 fedora 127 k perl-vars noarch 1.05-492.fc38 copr_base 16 k Transaction Summary ============================================================================================================= Install 69 Packages Total download size: 60 M Installed size: 216 M Downloading Packages: (1/69): gc-8.2.2-1.fc38.ppc64le.rpm 416 kB/s | 122 kB 00:00 (2/69): groff-base-1.22.4-10.fc38.ppc64le.rpm 3.2 MB/s | 1.1 MB 00:00 (3/69): htslib-1.15.1-1.fc38.ppc64le.rpm 7.5 MB/s | 558 kB 00:00 (4/69): htslib-devel-1.15.1-1.fc38.ppc64le.rpm 2.4 MB/s | 100 kB 00:00 (5/69): libmpc-1.2.1-5.fc38.ppc64le.rpm 8.1 MB/s | 85 kB 00:00 (6/69): libxcrypt-devel-4.4.33-5.fc38.ppc64le.r 3.3 MB/s | 31 kB 00:00 (7/69): guile22-2.2.7-6.fc38.ppc64le.rpm 15 MB/s | 6.5 MB 00:00 (8/69): make-4.3-11.fc38.ppc64le.rpm 13 MB/s | 549 kB 00:00 (9/69): ncurses-6.3-5.20221126.fc38.ppc64le.rpm 29 MB/s | 416 kB 00:00 (10/69): ncurses-c++-libs-6.3-5.20221126.fc38.p 3.1 MB/s | 39 kB 00:00 (11/69): perl-Class-Struct-0.66-492.fc38.noarch 2.4 MB/s | 26 kB 00:00 (12/69): ncurses-devel-6.3-5.20221126.fc38.ppc6 32 MB/s | 522 kB 00:00 (13/69): htslib-tools-1.15.1-1.fc38.ppc64le.rpm 6.0 MB/s | 615 kB 00:00 (14/69): perl-DynaLoader-1.52-492.fc38.ppc64le. 2.4 MB/s | 29 kB 00:00 (15/69): perl-Encode-3.19-492.fc38.ppc64le.rpm 55 MB/s | 1.7 MB 00:00 (16/69): perl-Errno-1.36-492.fc38.ppc64le.rpm 747 kB/s | 18 kB 00:00 (17/69): perl-Fcntl-1.15-492.fc38.ppc64le.rpm 997 kB/s | 25 kB 00:00 (18/69): perl-File-Basename-2.85-492.fc38.noarc 2.4 MB/s | 21 kB 00:00 (19/69): perl-File-stat-1.12-492.fc38.noarch.rp 2.3 MB/s | 21 kB 00:00 (20/69): perl-FindBin-1.53-492.fc38.noarch.rpm 1.8 MB/s | 17 kB 00:00 (21/69): perl-Getopt-Std-1.13-492.fc38.noarch.r 2.2 MB/s | 19 kB 00:00 (22/69): perl-IO-1.50-492.fc38.ppc64le.rpm 9.3 MB/s | 91 kB 00:00 (23/69): perl-IPC-Open3-1.22-492.fc38.noarch.rp 2.8 MB/s | 26 kB 00:00 (24/69): perl-MIME-Base64-3.16-489.fc38.ppc64le 3.5 MB/s | 31 kB 00:00 (25/69): perl-POSIX-2.03-492.fc38.ppc64le.rpm 12 MB/s | 123 kB 00:00 (26/69): perl-PathTools-3.84-489.fc38.ppc64le.r 7.3 MB/s | 83 kB 00:00 (27/69): perl-Scalar-List-Utils-1.63-489.fc38.p 7.9 MB/s | 75 kB 00:00 (28/69): perl-SelectSaver-1.02-492.fc38.noarch. 1.8 MB/s | 15 kB 00:00 (29/69): perl-Socket-2.036-1.fc38.ppc64le.rpm 6.2 MB/s | 57 kB 00:00 (30/69): perl-Storable-3.26-489.fc38.ppc64le.rp 10 MB/s | 101 kB 00:00 (31/69): perl-Symbol-1.09-492.fc38.noarch.rpm 2.1 MB/s | 18 kB 00:00 (32/69): perl-if-0.61.000-492.fc38.noarch.rpm 2.1 MB/s | 17 kB 00:00 (33/69): perl-interpreter-5.36.0-492.fc38.ppc64 8.0 MB/s | 76 kB 00:00 (34/69): perl-lib-0.65-492.fc38.ppc64le.rpm 2.0 MB/s | 18 kB 00:00 (35/69): perl-libs-5.36.0-492.fc38.ppc64le.rpm 44 MB/s | 2.2 MB 00:00 (36/69): perl-mro-1.26-492.fc38.ppc64le.rpm 737 kB/s | 33 kB 00:00 (37/69): perl-overload-1.35-492.fc38.noarch.rpm 1.1 MB/s | 49 kB 00:00 (38/69): perl-overloading-0.02-492.fc38.noarch. 1.6 MB/s | 16 kB 00:00 (39/69): perl-vars-1.05-492.fc38.noarch.rpm 1.6 MB/s | 16 kB 00:00 (40/69): annobin-docs-10.99-1.0.1.fc38.noarch.r 186 kB/s | 93 kB 00:00 (41/69): annobin-plugin-gcc-10.99-1.0.1.fc38.pp 1.5 MB/s | 890 kB 00:00 (42/69): gcc-plugin-annobin-13.0.0-0.4.fc38.ppc 1.0 MB/s | 32 kB 00:00 (43/69): libasan-13.0.0-0.4.fc38.ppc64le.rpm 12 MB/s | 477 kB 00:00 (44/69): libatomic-13.0.0-0.4.fc38.ppc64le.rpm 604 kB/s | 19 kB 00:00 (45/69): libtool-ltdl-2.4.7-3.0.1.fc38.ppc64le. 852 kB/s | 41 kB 00:00 (46/69): libubsan-13.0.0-0.4.fc38.ppc64le.rpm 7.0 MB/s | 234 kB 00:00 (47/69): glibc-devel-2.36.9000-19.fc38.ppc64le. 4.6 MB/s | 546 kB 00:00 (48/69): gcc-13.0.0-0.4.fc38.ppc64le.rpm 54 MB/s | 30 MB 00:00 (49/69): kernel-headers-6.1.0-1.fc38.ppc64le.rp 8.2 MB/s | 1.5 MB 00:00 (50/69): perl-Carp-1.52-489.fc37.noarch.rpm 1.1 MB/s | 29 kB 00:00 (51/69): perl-Exporter-5.77-489.fc37.noarch.rpm 1.4 MB/s | 31 kB 00:00 (52/69): perl-File-Path-2.18-489.fc37.noarch.rp 3.1 MB/s | 35 kB 00:00 (53/69): perl-Getopt-Long-2.54-1.fc38.noarch.rp 2.4 MB/s | 60 kB 00:00 (54/69): perl-File-Temp-0.231.100-489.fc37.noar 1.7 MB/s | 59 kB 00:00 (55/69): perl-HTTP-Tiny-0.082-1.fc37.noarch.rpm 2.3 MB/s | 55 kB 00:00 (56/69): perl-Pod-Escapes-1.07-489.fc37.noarch. 686 kB/s | 20 kB 00:00 (57/69): perl-Pod-Perldoc-3.28.01-490.fc37.noar 4.1 MB/s | 90 kB 00:00 (58/69): perl-Pod-Simple-3.43-490.fc37.noarch.r 10 MB/s | 225 kB 00:00 (59/69): perl-Pod-Usage-2.03-3.fc37.noarch.rpm 2.3 MB/s | 40 kB 00:00 (60/69): perl-Term-ANSIColor-5.01-490.fc37.noar 2.2 MB/s | 48 kB 00:00 (61/69): perl-Term-Cap-1.17-489.fc37.noarch.rpm 970 kB/s | 22 kB 00:00 (62/69): perl-Text-ParseWords-3.31-489.fc37.noa 910 kB/s | 16 kB 00:00 (63/69): cpp-13.0.0-0.4.fc38.ppc64le.rpm 7.8 MB/s | 9.8 MB 00:01 (64/69): perl-Text-Tabs+Wrap-2021.0814-489.fc37 369 kB/s | 22 kB 00:00 (65/69): perl-Time-Local-1.300-489.fc37.noarch. 613 kB/s | 33 kB 00:00 (66/69): perl-constant-1.33-490.fc37.noarch.rpm 1.1 MB/s | 23 kB 00:00 (67/69): perl-podlators-5.00-1.fc38.noarch.rpm 5.4 MB/s | 127 kB 00:00 (68/69): perl-parent-0.239-1.fc38.noarch.rpm 604 kB/s | 14 kB 00:00 (69/69): zlib-devel-1.2.13-1.fc38.ppc64le.rpm 3.2 MB/s | 45 kB 00:00 -------------------------------------------------------------------------------- Total 27 MB/s | 60 MB 00:02 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : libmpc-1.2.1-5.fc38.ppc64le 1/69 Installing : htslib-1.15.1-1.fc38.ppc64le 2/69 Installing : cpp-13.0.0-0.4.fc38.ppc64le 3/69 Installing : kernel-headers-6.1.0-1.fc38.ppc64le 4/69 Installing : glibc-devel-2.36.9000-19.fc38.ppc64le 5/69 Installing : libxcrypt-devel-4.4.33-5.fc38.ppc64le 6/69 Installing : libubsan-13.0.0-0.4.fc38.ppc64le 7/69 Installing : libtool-ltdl-2.4.7-3.0.1.fc38.ppc64le 8/69 Installing : libatomic-13.0.0-0.4.fc38.ppc64le 9/69 Installing : libasan-13.0.0-0.4.fc38.ppc64le 10/69 Installing : annobin-docs-10.99-1.0.1.fc38.noarch 11/69 Installing : ncurses-c++-libs-6.3-5.20221126.fc38.ppc64le 12/69 Installing : ncurses-6.3-5.20221126.fc38.ppc64le 13/69 Running scriptlet: groff-base-1.22.4-10.fc38.ppc64le 14/69 Installing : groff-base-1.22.4-10.fc38.ppc64le 14/69 Running scriptlet: groff-base-1.22.4-10.fc38.ppc64le 14/69 Installing : perl-if-0.61.000-492.fc38.noarch 15/69 Installing : perl-Pod-Escapes-1:1.07-489.fc37.noarch 16/69 Installing : perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch 17/69 Installing : perl-File-Path-2.18-489.fc37.noarch 18/69 Installing : perl-Time-Local-2:1.300-489.fc37.noarch 19/69 Installing : perl-Class-Struct-0.66-492.fc38.noarch 20/69 Installing : perl-POSIX-2.03-492.fc38.ppc64le 21/69 Installing : perl-Term-ANSIColor-5.01-490.fc37.noarch 22/69 Installing : perl-Term-Cap-1.17-489.fc37.noarch 23/69 Installing : perl-IPC-Open3-1.22-492.fc38.noarch 24/69 Installing : perl-File-Temp-1:0.231.100-489.fc37.noarch 25/69 Installing : perl-HTTP-Tiny-0.082-1.fc37.noarch 26/69 Installing : perl-Pod-Simple-1:3.43-490.fc37.noarch 27/69 Installing : perl-Symbol-1.09-492.fc38.noarch 28/69 Installing : perl-SelectSaver-1.02-492.fc38.noarch 29/69 Installing : perl-Socket-4:2.036-1.fc38.ppc64le 30/69 Installing : perl-File-stat-1.12-492.fc38.noarch 31/69 Installing : perl-podlators-1:5.00-1.fc38.noarch 32/69 Installing : perl-Pod-Perldoc-3.28.01-490.fc37.noarch 33/69 Installing : perl-mro-1.26-492.fc38.ppc64le 34/69 Installing : perl-Fcntl-1.15-492.fc38.ppc64le 35/69 Installing : perl-overloading-0.02-492.fc38.noarch 36/69 Installing : perl-Text-ParseWords-3.31-489.fc37.noarch 37/69 Installing : perl-IO-1.50-492.fc38.ppc64le 38/69 Installing : perl-Pod-Usage-4:2.03-3.fc37.noarch 39/69 Installing : perl-Getopt-Std-1.13-492.fc38.noarch 40/69 Installing : perl-MIME-Base64-3.16-489.fc38.ppc64le 41/69 Installing : perl-Errno-1.36-492.fc38.ppc64le 42/69 Installing : perl-File-Basename-2.85-492.fc38.noarch 43/69 Installing : perl-Scalar-List-Utils-5:1.63-489.fc38.ppc64le 44/69 Installing : perl-overload-1.35-492.fc38.noarch 45/69 Installing : perl-vars-1.05-492.fc38.noarch 46/69 Installing : perl-Storable-1:3.26-489.fc38.ppc64le 47/69 Installing : perl-constant-1.33-490.fc37.noarch 48/69 Installing : perl-parent-1:0.239-1.fc38.noarch 49/69 Installing : perl-Getopt-Long-1:2.54-1.fc38.noarch 50/69 Installing : perl-DynaLoader-1.52-492.fc38.ppc64le 51/69 Installing : perl-Carp-1.52-489.fc37.noarch 52/69 Installing : perl-Exporter-5.77-489.fc37.noarch 53/69 Installing : perl-PathTools-3.84-489.fc38.ppc64le 54/69 Installing : perl-Encode-4:3.19-492.fc38.ppc64le 55/69 Installing : perl-libs-4:5.36.0-492.fc38.ppc64le 56/69 Installing : perl-interpreter-4:5.36.0-492.fc38.ppc64le 57/69 Installing : gc-8.2.2-1.fc38.ppc64le 58/69 Installing : guile22-2.2.7-6.fc38.ppc64le 59/69 Installing : make-1:4.3-11.fc38.ppc64le 60/69 Installing : gcc-13.0.0-0.4.fc38.ppc64le 61/69 Running scriptlet: gcc-13.0.0-0.4.fc38.ppc64le 61/69 Installing : annobin-plugin-gcc-10.99-1.0.1.fc38.ppc64le 62/69 Running scriptlet: annobin-plugin-gcc-10.99-1.0.1.fc38.ppc64le 62/69 Installing : gcc-plugin-annobin-13.0.0-0.4.fc38.ppc64le 63/69 Installing : perl-FindBin-1.53-492.fc38.noarch 64/69 Installing : perl-lib-0.65-492.fc38.ppc64le 65/69 Installing : ncurses-devel-6.3-5.20221126.fc38.ppc64le 66/69 Installing : htslib-devel-1.15.1-1.fc38.ppc64le 67/69 Installing : htslib-tools-1.15.1-1.fc38.ppc64le 68/69 Installing : zlib-devel-1.2.13-1.fc38.ppc64le 69/69 Running scriptlet: zlib-devel-1.2.13-1.fc38.ppc64le 69/69 Verifying : gc-8.2.2-1.fc38.ppc64le 1/69 Verifying : groff-base-1.22.4-10.fc38.ppc64le 2/69 Verifying : guile22-2.2.7-6.fc38.ppc64le 3/69 Verifying : htslib-1.15.1-1.fc38.ppc64le 4/69 Verifying : htslib-devel-1.15.1-1.fc38.ppc64le 5/69 Verifying : htslib-tools-1.15.1-1.fc38.ppc64le 6/69 Verifying : libmpc-1.2.1-5.fc38.ppc64le 7/69 Verifying : libxcrypt-devel-4.4.33-5.fc38.ppc64le 8/69 Verifying : make-1:4.3-11.fc38.ppc64le 9/69 Verifying : ncurses-6.3-5.20221126.fc38.ppc64le 10/69 Verifying : ncurses-c++-libs-6.3-5.20221126.fc38.ppc64le 11/69 Verifying : ncurses-devel-6.3-5.20221126.fc38.ppc64le 12/69 Verifying : perl-Class-Struct-0.66-492.fc38.noarch 13/69 Verifying : perl-DynaLoader-1.52-492.fc38.ppc64le 14/69 Verifying : perl-Encode-4:3.19-492.fc38.ppc64le 15/69 Verifying : perl-Errno-1.36-492.fc38.ppc64le 16/69 Verifying : perl-Fcntl-1.15-492.fc38.ppc64le 17/69 Verifying : perl-File-Basename-2.85-492.fc38.noarch 18/69 Verifying : perl-File-stat-1.12-492.fc38.noarch 19/69 Verifying : perl-FindBin-1.53-492.fc38.noarch 20/69 Verifying : perl-Getopt-Std-1.13-492.fc38.noarch 21/69 Verifying : perl-IO-1.50-492.fc38.ppc64le 22/69 Verifying : perl-IPC-Open3-1.22-492.fc38.noarch 23/69 Verifying : perl-MIME-Base64-3.16-489.fc38.ppc64le 24/69 Verifying : perl-POSIX-2.03-492.fc38.ppc64le 25/69 Verifying : perl-PathTools-3.84-489.fc38.ppc64le 26/69 Verifying : perl-Scalar-List-Utils-5:1.63-489.fc38.ppc64le 27/69 Verifying : perl-SelectSaver-1.02-492.fc38.noarch 28/69 Verifying : perl-Socket-4:2.036-1.fc38.ppc64le 29/69 Verifying : perl-Storable-1:3.26-489.fc38.ppc64le 30/69 Verifying : perl-Symbol-1.09-492.fc38.noarch 31/69 Verifying : perl-if-0.61.000-492.fc38.noarch 32/69 Verifying : perl-interpreter-4:5.36.0-492.fc38.ppc64le 33/69 Verifying : perl-lib-0.65-492.fc38.ppc64le 34/69 Verifying : perl-libs-4:5.36.0-492.fc38.ppc64le 35/69 Verifying : perl-mro-1.26-492.fc38.ppc64le 36/69 Verifying : perl-overload-1.35-492.fc38.noarch 37/69 Verifying : perl-overloading-0.02-492.fc38.noarch 38/69 Verifying : perl-vars-1.05-492.fc38.noarch 39/69 Verifying : annobin-docs-10.99-1.0.1.fc38.noarch 40/69 Verifying : annobin-plugin-gcc-10.99-1.0.1.fc38.ppc64le 41/69 Verifying : cpp-13.0.0-0.4.fc38.ppc64le 42/69 Verifying : gcc-13.0.0-0.4.fc38.ppc64le 43/69 Verifying : gcc-plugin-annobin-13.0.0-0.4.fc38.ppc64le 44/69 Verifying : libasan-13.0.0-0.4.fc38.ppc64le 45/69 Verifying : libatomic-13.0.0-0.4.fc38.ppc64le 46/69 Verifying : libtool-ltdl-2.4.7-3.0.1.fc38.ppc64le 47/69 Verifying : libubsan-13.0.0-0.4.fc38.ppc64le 48/69 Verifying : glibc-devel-2.36.9000-19.fc38.ppc64le 49/69 Verifying : kernel-headers-6.1.0-1.fc38.ppc64le 50/69 Verifying : perl-Carp-1.52-489.fc37.noarch 51/69 Verifying : perl-Exporter-5.77-489.fc37.noarch 52/69 Verifying : perl-File-Path-2.18-489.fc37.noarch 53/69 Verifying : perl-File-Temp-1:0.231.100-489.fc37.noarch 54/69 Verifying : perl-Getopt-Long-1:2.54-1.fc38.noarch 55/69 Verifying : perl-HTTP-Tiny-0.082-1.fc37.noarch 56/69 Verifying : perl-Pod-Escapes-1:1.07-489.fc37.noarch 57/69 Verifying : perl-Pod-Perldoc-3.28.01-490.fc37.noarch 58/69 Verifying : perl-Pod-Simple-1:3.43-490.fc37.noarch 59/69 Verifying : perl-Pod-Usage-4:2.03-3.fc37.noarch 60/69 Verifying : perl-Term-ANSIColor-5.01-490.fc37.noarch 61/69 Verifying : perl-Term-Cap-1.17-489.fc37.noarch 62/69 Verifying : perl-Text-ParseWords-3.31-489.fc37.noarch 63/69 Verifying : perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch 64/69 Verifying : perl-Time-Local-2:1.300-489.fc37.noarch 65/69 Verifying : perl-constant-1.33-490.fc37.noarch 66/69 Verifying : perl-parent-1:0.239-1.fc38.noarch 67/69 Verifying : perl-podlators-1:5.00-1.fc38.noarch 68/69 Verifying : zlib-devel-1.2.13-1.fc38.ppc64le 69/69 Installed: annobin-docs-10.99-1.0.1.fc38.noarch annobin-plugin-gcc-10.99-1.0.1.fc38.ppc64le cpp-13.0.0-0.4.fc38.ppc64le gc-8.2.2-1.fc38.ppc64le gcc-13.0.0-0.4.fc38.ppc64le gcc-plugin-annobin-13.0.0-0.4.fc38.ppc64le glibc-devel-2.36.9000-19.fc38.ppc64le groff-base-1.22.4-10.fc38.ppc64le guile22-2.2.7-6.fc38.ppc64le htslib-1.15.1-1.fc38.ppc64le htslib-devel-1.15.1-1.fc38.ppc64le htslib-tools-1.15.1-1.fc38.ppc64le kernel-headers-6.1.0-1.fc38.ppc64le libasan-13.0.0-0.4.fc38.ppc64le libatomic-13.0.0-0.4.fc38.ppc64le libmpc-1.2.1-5.fc38.ppc64le libtool-ltdl-2.4.7-3.0.1.fc38.ppc64le libubsan-13.0.0-0.4.fc38.ppc64le libxcrypt-devel-4.4.33-5.fc38.ppc64le make-1:4.3-11.fc38.ppc64le ncurses-6.3-5.20221126.fc38.ppc64le ncurses-c++-libs-6.3-5.20221126.fc38.ppc64le ncurses-devel-6.3-5.20221126.fc38.ppc64le perl-Carp-1.52-489.fc37.noarch perl-Class-Struct-0.66-492.fc38.noarch perl-DynaLoader-1.52-492.fc38.ppc64le perl-Encode-4:3.19-492.fc38.ppc64le perl-Errno-1.36-492.fc38.ppc64le perl-Exporter-5.77-489.fc37.noarch perl-Fcntl-1.15-492.fc38.ppc64le perl-File-Basename-2.85-492.fc38.noarch perl-File-Path-2.18-489.fc37.noarch perl-File-Temp-1:0.231.100-489.fc37.noarch perl-File-stat-1.12-492.fc38.noarch perl-FindBin-1.53-492.fc38.noarch perl-Getopt-Long-1:2.54-1.fc38.noarch perl-Getopt-Std-1.13-492.fc38.noarch perl-HTTP-Tiny-0.082-1.fc37.noarch perl-IO-1.50-492.fc38.ppc64le perl-IPC-Open3-1.22-492.fc38.noarch perl-MIME-Base64-3.16-489.fc38.ppc64le perl-POSIX-2.03-492.fc38.ppc64le perl-PathTools-3.84-489.fc38.ppc64le perl-Pod-Escapes-1:1.07-489.fc37.noarch perl-Pod-Perldoc-3.28.01-490.fc37.noarch perl-Pod-Simple-1:3.43-490.fc37.noarch perl-Pod-Usage-4:2.03-3.fc37.noarch perl-Scalar-List-Utils-5:1.63-489.fc38.ppc64le perl-SelectSaver-1.02-492.fc38.noarch perl-Socket-4:2.036-1.fc38.ppc64le perl-Storable-1:3.26-489.fc38.ppc64le perl-Symbol-1.09-492.fc38.noarch perl-Term-ANSIColor-5.01-490.fc37.noarch perl-Term-Cap-1.17-489.fc37.noarch perl-Text-ParseWords-3.31-489.fc37.noarch perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch perl-Time-Local-2:1.300-489.fc37.noarch perl-constant-1.33-490.fc37.noarch perl-if-0.61.000-492.fc38.noarch perl-interpreter-4:5.36.0-492.fc38.ppc64le perl-lib-0.65-492.fc38.ppc64le perl-libs-4:5.36.0-492.fc38.ppc64le perl-mro-1.26-492.fc38.ppc64le perl-overload-1.35-492.fc38.noarch perl-overloading-0.02-492.fc38.noarch perl-parent-1:0.239-1.fc38.noarch perl-podlators-1:5.00-1.fc38.noarch perl-vars-1.05-492.fc38.noarch zlib-devel-1.2.13-1.fc38.ppc64le Complete! Finish: build setup for samtools-1.15.1-1.fc38.src.rpm Start: rpmbuild samtools-1.15.1-1.fc38.src.rpm Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1660521600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.VTwyC1 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf samtools-1.15.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/samtools-1.15.1.tar.bz2 + STATUS=0 + '[' 0 -ne 0 ']' + cd samtools-1.15.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + rm -f INSTALL + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.HjULYw + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd samtools-1.15.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./htslib-1.15.1/configure + diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure + mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./htslib-1.15.1/configure + diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure + mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./htslib-1.15.1/configure + diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure --- ./htslib-1.15.1/configure.backup 2022-04-07 15:42:52.000000000 +0000 +++ ./htslib-1.15.1/configure 2022-12-29 06:10:19.058240512 +0000 @@ -1697,7 +1697,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./htslib-1.15.1/configure + diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure + mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./htslib-1.15.1/configure + diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure + mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh ++ grep -q runstatedir=DIR ./configure ++ echo --runstatedir=/run + ./configure --build=powerpc64le-redhat-linux-gnu --host=powerpc64le-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' --prefix=/usr --with-htslib=system checking for gawk... gawk checking for powerpc64le-redhat-linux-gnu-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for htslib/sam.h... yes checking for hts_version in -lhts... yes checking for NcursesW wide-character library... yes checking for working ncursesw/curses.h... yes checking for library containing cbreak... none required checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating config.h + /usr/bin/make -O -j5 V=1 VERBOSE=1 gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_aux.o bam_aux.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam.o bam.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_index.o bam_index.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_cat.o bam_cat.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_plbuf.o bam_plbuf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_md.o bam_md.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_reheader.o bam_reheader.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_fastq.o bam_fastq.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_plcmd.o bam_plcmd.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o sam_view.o sam_view.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_rmdupse.o bam_rmdupse.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_color.o bam_color.c echo '#define SAMTOOLS_VERSION "1.15.1"' > version.h echo '#define SAMTOOLS_CC "gcc"' >> version.h echo '#define SAMTOOLS_CPPFLAGS ""' >> version.h echo '#define SAMTOOLS_CFLAGS "-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection"' >> version.h echo '#define SAMTOOLS_LDFLAGS "-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes"' >> version.h echo '#define SAMTOOLS_HTSDIR ""' >> version.h echo '#define SAMTOOLS_LIBS ""' >> version.h echo '#define SAMTOOLS_CURSES_LIB "-lncursesw"' >> version.h gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_rmdup.o bam_rmdup.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_stat.o bam_stat.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam2bcf.o bam2bcf.c bam2bcf.c: In function 'bcf_call_glfgen': bam2bcf.c:81:33: warning: argument 2 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 81 | bca->bases = (uint16_t*)realloc(bca->bases, 2 * bca->max_bases); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/htslib/kstring.h:30, from /usr/include/htslib/hts.h:37, from bam2bcf.c:30: /usr/include/stdlib.h:564:14: note: in a call to allocation function 'realloc' declared here 564 | extern void *realloc (void *__ptr, size_t __size) | ^~~~~~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_mate.o bam_mate.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o cut_target.o cut_target.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o sample.o sample.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o coverage.o coverage.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o padding.o padding.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bedcov.o bedcov.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam2depth.o bam2depth.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o faidx.o faidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o phase.o phase.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o dict.o dict.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_flags.o bam_flags.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o stats_isize.o stats_isize.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bamshuf.o bamshuf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_split.o bam_split.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_tview.o bam_tview.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_tview_curses.o bam_tview_curses.c bam_tview_curses.c: In function 'tv_win_help': bam_tview_curses.c:333:14: warning: 'base' is used uninitialized [-Wuninitialized] 333 | tview_t* base=(tview_t*)base; | ^~~~ bam_tview_curses.c:333:14: note: 'base' was declared here 333 | tview_t* base=(tview_t*)base; | ^~~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_tview_html.o bam_tview_html.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_quickcheck.o bam_quickcheck.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_lpileup.o bam_lpileup.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_addrprg.o bam_addrprg.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o tmp_file.o tmp_file.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_sort.o bam_sort.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_import.o bam_import.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o stats.o stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_ampliconclip.o bam_ampliconclip.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_samples.o bam_samples.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o consensus_pileup.o consensus_pileup.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o sam_opts.o sam_opts.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o sam_utils.o sam_utils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_consensus.o bam_consensus.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bam_markdup.o bam_markdup.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o amplicon_stats.o amplicon_stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DMAQ_LONGREADS -I. -I./lz4 -c -o misc/maq2sam-long.o misc/maq2sam.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o misc/maq2sam-short.o misc/maq2sam.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o misc/md5sum-lite.o misc/md5sum-lite.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o misc/md5fa.o misc/md5fa.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bedidx.o bedidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o misc/ace2sam.o misc/ace2sam.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o test/test.o test/test.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o misc/wgsim.o misc/wgsim.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o test/split/test_count_rg.o test/split/test_count_rg.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o test/split/test_expand_format_string.o test/split/test_expand_format_string.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o test/split/test_filter_header_rg.o test/split/test_filter_header_rg.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o lz4/lz4.o lz4/lz4.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o test/vcf-miniview.o test/vcf-miniview.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o bamtk.o bamtk.c ar -rcs libst.a sam_opts.o sam_utils.o bedidx.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o test/split/test_parse_args.o test/split/test_parse_args.c gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o misc/maq2sam-long misc/maq2sam-long.o -lz gcc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o misc/maq2sam-short misc/maq2sam-short.o -lz gcc -L./lz4 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o misc/ace2sam misc/ace2sam.o -lhts -lz gcc -L./lz4 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o misc/md5sum-lite misc/md5sum-lite.o -lhts -lz gcc -L./lz4 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o misc/md5fa misc/md5fa.o -lhts -lz gcc -L./lz4 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test/split/test_count_rg test/split/test_count_rg.o test/test.o libst.a -lhts -lz -lpthread gcc -L./lz4 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test/split/test_expand_format_string test/split/test_expand_format_string.o test/test.o libst.a -lhts -lz -lpthread gcc -L./lz4 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o misc/wgsim misc/wgsim.o -lm -lhts -lz gcc -L./lz4 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test/split/test_filter_header_rg test/split/test_filter_header_rg.o test/test.o libst.a -lhts -lz -lpthread gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o test/merge/test_bam_translate.o test/merge/test_bam_translate.c gcc -L./lz4 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test/vcf-miniview test/vcf-miniview.o -lhts -lz -lpthread gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o test/merge/test_rtrans_build.o test/merge/test_rtrans_build.c gcc -L./lz4 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test/split/test_parse_args test/split/test_parse_args.o test/test.o libst.a -lhts -lz -lpthread gcc -L./lz4 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test/merge/test_rtrans_build test/merge/test_rtrans_build.o test/test.o libst.a -lhts -lz -lpthread gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I. -I./lz4 -c -o test/merge/test_trans_tbl_init.o test/merge/test_trans_tbl_init.c gcc -L./lz4 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test/merge/test_bam_translate test/merge/test_bam_translate.o test/test.o libst.a -lhts -lz -lpthread gcc -L./lz4 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test/merge/test_trans_tbl_init test/merge/test_trans_tbl_init.o test/test.o libst.a -lhts -lz -lpthread gcc -L./lz4 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o samtools bam.o bam_aux.o bam_index.o bam_plcmd.o sam_view.o bam_fastq.o bam_cat.o bam_md.o bam_plbuf.o bam_reheader.o bam_sort.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o bam2bcf.o sample.o cut_target.o phase.o bam2depth.o coverage.o padding.o bedcov.o bamshuf.o faidx.o dict.o stats.o stats_isize.o bam_flags.o bam_split.o bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o bam_quickcheck.o bam_addrprg.o bam_markdup.o tmp_file.o bam_ampliconclip.o amplicon_stats.o bam_import.o bam_samples.o bam_consensus.o consensus_pileup.o ./lz4/lz4.o libst.a -lhts -lncursesw -lm -lz -lpthread In function 'bcf_call_glfgen', inlined from 'tv_pl_func' at bam_tview.c:196:9: bam2bcf.c:81:33: warning: argument 2 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 81 | bca->bases = (uint16_t*)realloc(bca->bases, 2 * bca->max_bases); | ^ /usr/include/stdlib.h: In function 'tv_pl_func': /usr/include/stdlib.h:564:14: note: in a call to allocation function 'realloc' declared here 564 | extern void *realloc (void *__ptr, size_t __size) | ^ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.iY5jHo + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le '!=' / ']' + rm -rf /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le ++ dirname /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd samtools-1.15.1 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le 'INSTALL=/usr/bin/install -p' mkdir -p -m 755 /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/share/man/man1 /usr/bin/install -p samtools /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin /usr/bin/install -p misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin /usr/bin/install -p misc/blast2sam.pl misc/bowtie2sam.pl misc/export2sam.pl misc/fasta-sanitize.pl misc/interpolate_sam.pl misc/novo2sam.pl misc/plot-ampliconstats misc/plot-bamstats misc/psl2sam.pl misc/sam2vcf.pl misc/samtools.pl misc/seq_cache_populate.pl misc/soap2sam.pl misc/wgsim_eval.pl misc/zoom2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin /usr/bin/install -p -m 644 doc/samtools*.1 misc/wgsim.1 /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/share/man/man1 ++ grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/ace2sam /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/blast2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/bowtie2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/export2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/fasta-sanitize.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/interpolate_sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/maq2sam-long /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/maq2sam-short /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/md5fa /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/md5sum-lite /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/novo2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/plot-ampliconstats /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/plot-bamstats /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/psl2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/sam2vcf.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/samtools /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/samtools.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/seq_cache_populate.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/soap2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/wgsim /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/wgsim_eval.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/zoom2sam.pl + for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/*) + sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/blast2sam.pl + for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/*) + sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/bowtie2sam.pl + for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/*) + sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/export2sam.pl + for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/*) + sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/fasta-sanitize.pl + for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/*) + sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/interpolate_sam.pl + for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/*) + sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/novo2sam.pl + for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/*) + sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/plot-ampliconstats + for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/*) + sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/plot-bamstats + for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/*) + sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/psl2sam.pl + for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/*) + sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/sam2vcf.pl + for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/*) + sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/samtools.pl + for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/*) + sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/seq_cache_populate.pl + for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/*) + sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/soap2sam.pl + for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/*) + sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/wgsim_eval.pl + for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/*) + sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/zoom2sam.pl + /usr/bin/find-debuginfo -j5 --strict-build-id -m -i --build-id-seed 1.15.1-1.fc38 --unique-debug-suffix -1.15.1-1.fc38.ppc64le --unique-debug-src-base samtools-1.15.1-1.fc38.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/samtools-1.15.1 extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/ace2sam extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/md5fa extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/md5sum-lite extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/maq2sam-long extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/maq2sam-short extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/samtools extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/bin/wgsim original debug info size: 2432kB, size after compression: 2240kB /usr/bin/sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match. 2442 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.w6RPgK + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd samtools-1.15.1 + ldd samtools + grep -E '/lib(64)?/libhts\.so\.' libhts.so.3 => /lib64/libhts.so.3 (0x00007fff81e40000) + make test test/split/test_count_rg test/split/test_expand_format_string test/split/test_filter_header_rg test/split/test_parse_args REF_PATH=: test/test.pl --exec bgzip= ${TEST_OPTS:-} bgzip -c -b 65272 -s 5 /tmp/r5Evz6CSKz/bgzip.dat.gz .. ok bgzip -c -b 979200 -s 6 /tmp/r5Evz6CSKz/bgzip.dat.gz .. ok bgzip -c -b 652804 -s 6 /tmp/r5Evz6CSKz/bgzip.dat.gz .. ok /builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/r5Evz6CSKz/faidx.fa 3:11-13 | grep -v '^>' .. ok /builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/r5Evz6CSKz/faidx.fa.gz 3:11-13 | grep -v '^>' .. ok /builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/r5Evz6CSKz/faidx.fa 2:998-1003 | grep -v '^>' .. ok /builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/r5Evz6CSKz/faidx.fa.gz 2:998-1003 | grep -v '^>' .. ok /builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/r5Evz6CSKz/faidx.fa 1:100-104 | grep -v '^>' .. ok /builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/r5Evz6CSKz/faidx.fa.gz 1:100-104 | grep -v '^>' .. ok /builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/r5Evz6CSKz/faidx.fa 1:99998-100007 | grep -v '^>' .. ok /builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/r5Evz6CSKz/faidx.fa.gz 1:99998-100007 | grep -v '^>' .. ok /builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/r5Evz6CSKz/fqidx.fq 3:11-13 .. ok .. ok /builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/r5Evz6CSKz/fqidx.fq.gz 3:11-13 .. ok .. ok /builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/r5Evz6CSKz/fqidx.fq 2:998-1003 .. ok .. ok /builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/r5Evz6CSKz/fqidx.fq.gz 2:998-1003 .. ok .. ok /builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/r5Evz6CSKz/fqidx.fq 1:100-104 .. ok .. ok /builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/r5Evz6CSKz/fqidx.fq.gz 1:100-104 .. ok .. ok /builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/r5Evz6CSKz/fqidx.fq 1:99998-100007 .. ok .. ok /builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/r5Evz6CSKz/fqidx.fq.gz 1:99998-100007 .. ok .. ok test_dict: /builddir/build/BUILD/samtools-1.15.1/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz /builddir/build/BUILD/samtools-1.15.1/test/dat/dict.fa .. ok test_dict: /builddir/build/BUILD/samtools-1.15.1/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz /tmp/r5Evz6CSKz/dict.fa.gz .. ok test_dict: cat /builddir/build/BUILD/samtools-1.15.1/test/dat/dict.fa | /builddir/build/BUILD/samtools-1.15.1/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz .. ok test_dict: /builddir/build/BUILD/samtools-1.15.1/samtools dict -AH < /builddir/build/BUILD/samtools-1.15.1/test/dat/dict.alias.fa .. ok test_index: /builddir/build/BUILD/samtools-1.15.1/samtools view /tmp/r5Evz6CSKz/large_chrom.bam ref2 .. ok test_index: /builddir/build/BUILD/samtools-1.15.1/samtools view /tmp/r5Evz6CSKz/large_chrom.bam ref2:1-541556283 .. ok test_index: /builddir/build/BUILD/samtools-1.15.1/samtools index /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam && cat /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai .. ok test_index: /builddir/build/BUILD/samtools-1.15.1/samtools view -X /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /tmp/r5Evz6CSKz/test_input_1_b.bam.bai ref2 .. ok test_index: /builddir/build/BUILD/samtools-1.15.1/samtools merge -O sam - -X -cp -R ref2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai /tmp/r5Evz6CSKz/test_input_1_b.bam.bai .. ok test_index: /builddir/build/BUILD/samtools-1.15.1/samtools index -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.bam /tmp/r5Evz6CSKz/auto_indexed.csi && cat /tmp/r5Evz6CSKz/auto_indexed.csi .. ok test_index: /builddir/build/BUILD/samtools-1.15.1/samtools index /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.cram /tmp/r5Evz6CSKz/auto_indexed.crai && cat /tmp/r5Evz6CSKz/auto_indexed.crai .. ok test_index: /builddir/build/BUILD/samtools-1.15.1/samtools index -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.sam /tmp/r5Evz6CSKz/auto_indexed.csi && cat /tmp/r5Evz6CSKz/auto_indexed.csi .. ok test_index: /builddir/build/BUILD/samtools-1.15.1/samtools view -@ 2 /tmp/r5Evz6CSKz/large_chrom.bam ref2 .. ok test_index: /builddir/build/BUILD/samtools-1.15.1/samtools view -@ 2 /tmp/r5Evz6CSKz/large_chrom.bam ref2:1-541556283 .. ok test_index: /builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam && cat /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai .. ok test_index: /builddir/build/BUILD/samtools-1.15.1/samtools view -@ 2 -X /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /tmp/r5Evz6CSKz/test_input_1_b.bam.bai ref2 .. ok test_index: /builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -O sam - -X -cp -R ref2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai /tmp/r5Evz6CSKz/test_input_1_b.bam.bai .. ok test_index: /builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.bam /tmp/r5Evz6CSKz/auto_indexed.csi && cat /tmp/r5Evz6CSKz/auto_indexed.csi .. ok test_index: /builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.cram /tmp/r5Evz6CSKz/auto_indexed.crai && cat /tmp/r5Evz6CSKz/auto_indexed.crai .. ok test_index: /builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.sam /tmp/r5Evz6CSKz/auto_indexed.csi && cat /tmp/r5Evz6CSKz/auto_indexed.csi .. ok test_mpileup: /builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/r5Evz6CSKz/mpileup.bam.list -f /tmp/r5Evz6CSKz/mpileup.ref.fa.gz -r17:100-150 .. ok test_mpileup: /builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/r5Evz6CSKz/mpileup.cram.list -f /tmp/r5Evz6CSKz/mpileup.ref.fa.gz -r17:100-150 .. ok test_mpileup: /builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/r5Evz6CSKz/mpileup.bam.urllist -f /tmp/r5Evz6CSKz/mpileup.ref.fa.gz -r17:100-150 .. ok test_mpileup: /builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/r5Evz6CSKz/mpileup.cram.urllist -f /tmp/r5Evz6CSKz/mpileup.ref.fa.gz -r17:100-150 .. ok test_mpileup: /builddir/build/BUILD/samtools-1.15.1/samtools mpileup -B --ff 0x14 -f /tmp/r5Evz6CSKz/mpileup.ref.fa.gz -r17:1050-1060 /tmp/r5Evz6CSKz/mpileup.1.bam | grep -v mpileup .. ok test_mpileup: /builddir/build/BUILD/samtools-1.15.1/samtools mpileup -B --ff 0x14 -f /tmp/r5Evz6CSKz/mpileup.ref.fa.gz -r17:1050-1060 /tmp/r5Evz6CSKz/mpileup.1.cram | grep -v mpileup .. ok test_mpileup: /builddir/build/BUILD/samtools-1.15.1/samtools mpileup /builddir/build/BUILD/samtools-1.15.1/test/mpileup/overlap.bam | grep 128814202 test/test.pl: no IO::Pty module or can't open pty; skipping usage tests .. ok test_usage: samtools test_view: Generating test data file .................. done 1: SAM -> BAM -> SAM .. ok 2: SAM -> uncompressed BAM .. ok 3: uncompressed BAM -> SAM and compare .. ok 4: SAM -> fast compressed BAM .. ok 5: fast compressed BAM -> SAM and compare .. ok 6: SAM -> CRAM -> SAM (UR header tags) .. ok 7: SAM -> CRAM -> SAM (M5 header tags) .. ok 8: BAM -> CRAM with UR -> SAM .. ok 9: SAM -> BAM (M5 header tags) .. ok 10: SAM -> BAM -> CRAM -> SAM (M5 header tags) .. ok 11: CRAM -> BAM with UR .. ok 12: CRAM -> BAM with M5 .. ok 13: SAM -> SAM via stdout .. ok 14: SAM -> BAM via stdout .. ok 15: SAM -> CRAM via stdout .. ok 16: SAM from stdin -> SAM .. ok 17: BAM from stdin -> SAM .. ok 18: CRAM from stdin -> SAM .. ok 19: samtools view -H (SAM input) .. ok 20: samtools view -H (BAM input) .. ok 21: samtools view -H (CRAM input) .. ok 22: No headers (SAM input) .. ok 23: No headers (BAM input) .. ok 24: No headers (CRAM input) .. ok 25: Filter -f 128 (SAM input) .. ok 26: Count -f 128 (SAM input) .. ok 27: Filter -f 128 (BAM input) .. ok 28: Count -f 128 (BAM input) .. ok 29: Filter -f 128 (CRAM input) .. ok 30: Count -f 128 (CRAM input) .. ok 31: Filter -F 128 (SAM input) .. ok 32: Count -F 128 (SAM input) .. ok 33: Filter -F 128 (BAM input) .. ok 34: Count -F 128 (BAM input) .. ok 35: Filter -F 128 (CRAM input) .. ok 36: Count -F 128 (CRAM input) .. ok 37: Filter -F 128 -f 2 (SAM input) .. ok 38: Count -F 128 -f 2 (SAM input) .. ok 39: Filter -F 128 -f 2 (BAM input) .. ok 40: Count -F 128 -f 2 (BAM input) .. ok 41: Filter -F 128 -f 2 (CRAM input) .. ok 42: Count -F 128 -f 2 (CRAM input) .. ok 43: Filter -r grp2 (SAM input) .. ok 44: Count -r grp2 (SAM input) .. ok 45: Filter -r grp2 (BAM input) .. ok 46: Count -r grp2 (BAM input) .. ok 47: Filter -r grp2 (CRAM input) .. ok 48: Count -r grp2 (CRAM input) .. ok 49: Filter -R /tmp/r5Evz6CSKz/view.001.fogn (SAM input) .. ok 50: Count -R /tmp/r5Evz6CSKz/view.001.fogn (SAM input) .. ok 51: Filter -R /tmp/r5Evz6CSKz/view.001.fogn (BAM input) .. ok 52: Count -R /tmp/r5Evz6CSKz/view.001.fogn (BAM input) .. ok 53: Filter -R /tmp/r5Evz6CSKz/view.001.fogn (CRAM input) .. ok 54: Count -R /tmp/r5Evz6CSKz/view.001.fogn (CRAM input) .. ok 55: Filter -R /tmp/r5Evz6CSKz/view.001.fogn -r grp2 (SAM input).. ok 56: Count -R /tmp/r5Evz6CSKz/view.001.fogn -r grp2 (SAM input).. ok 57: Filter -R /tmp/r5Evz6CSKz/view.001.fogn -r grp2 (BAM input).. ok 58: Count -R /tmp/r5Evz6CSKz/view.001.fogn -r grp2 (BAM input).. ok 59: Filter -R /tmp/r5Evz6CSKz/view.001.fogn -r grp2 (CRAM input).. ok 60: Count -R /tmp/r5Evz6CSKz/view.001.fogn -r grp2 (CRAM input).. ok 61: Filter -r grp2 -R /tmp/r5Evz6CSKz/view.001.fogn (SAM input).. ok 62: Count -r grp2 -R /tmp/r5Evz6CSKz/view.001.fogn (SAM input).. ok 63: Filter -r grp2 -R /tmp/r5Evz6CSKz/view.001.fogn (BAM input).. ok 64: Count -r grp2 -R /tmp/r5Evz6CSKz/view.001.fogn (BAM input).. ok 65: Filter -r grp2 -R /tmp/r5Evz6CSKz/view.001.fogn (CRAM input).. ok 66: Count -r grp2 -R /tmp/r5Evz6CSKz/view.001.fogn (CRAM input).. ok 67: Filter -N /tmp/r5Evz6CSKz/view.001.forn (SAM input) .. ok 68: Count -N /tmp/r5Evz6CSKz/view.001.forn (SAM input) .. ok 69: Filter -N /tmp/r5Evz6CSKz/view.001.forn (BAM input) .. ok 70: Count -N /tmp/r5Evz6CSKz/view.001.forn (BAM input) .. ok 71: Filter -N /tmp/r5Evz6CSKz/view.001.forn (CRAM input) .. ok 72: Count -N /tmp/r5Evz6CSKz/view.001.forn (CRAM input) .. ok 73: Filter -d BC (SAM input) .. ok 74: Count -d BC (SAM input) .. ok 75: Filter -d BC (BAM input) .. ok 76: Count -d BC (BAM input) .. ok 77: Filter -d BC (CRAM input) .. ok 78: Count -d BC (CRAM input) .. ok 79: Filter -d BC:TGCA (SAM input) .. ok 80: Count -d BC:TGCA (SAM input) .. ok 81: Filter -d BC:TGCA (BAM input) .. ok 82: Count -d BC:TGCA (BAM input) .. ok 83: Filter -d BC:TGCA (CRAM input) .. ok 84: Count -d BC:TGCA (CRAM input) .. ok 85: Filter -D BC:/tmp/r5Evz6CSKz/view.001.fobc (SAM input) .. ok 86: Count -D BC:/tmp/r5Evz6CSKz/view.001.fobc (SAM input) .. ok 87: Filter -D BC:/tmp/r5Evz6CSKz/view.001.fobc (BAM input) .. ok 88: Count -D BC:/tmp/r5Evz6CSKz/view.001.fobc (BAM input) .. ok 89: Filter -D BC:/tmp/r5Evz6CSKz/view.001.fobc (CRAM input) .. ok 90: Count -D BC:/tmp/r5Evz6CSKz/view.001.fobc (CRAM input) .. ok 91: Filter -D BC:/tmp/r5Evz6CSKz/view.001.fobc -d BC:TGCA (SAM input).. ok 92: Count -D BC:/tmp/r5Evz6CSKz/view.001.fobc -d BC:TGCA (SAM input).. ok 93: Filter -D BC:/tmp/r5Evz6CSKz/view.001.fobc -d BC:TGCA (BAM input).. ok 94: Count -D BC:/tmp/r5Evz6CSKz/view.001.fobc -d BC:TGCA (BAM input).. ok 95: Filter -D BC:/tmp/r5Evz6CSKz/view.001.fobc -d BC:TGCA (CRAM input).. ok 96: Count -D BC:/tmp/r5Evz6CSKz/view.001.fobc -d BC:TGCA (CRAM input).. ok 97: Filter -d BC:TGCA -D BC:/tmp/r5Evz6CSKz/view.001.fobc (SAM input).. ok 98: Count -d BC:TGCA -D BC:/tmp/r5Evz6CSKz/view.001.fobc (SAM input).. ok 99: Filter -d BC:TGCA -D BC:/tmp/r5Evz6CSKz/view.001.fobc (BAM input).. ok 100: Count -d BC:TGCA -D BC:/tmp/r5Evz6CSKz/view.001.fobc (BAM input).. ok 101: Filter -d BC:TGCA -D BC:/tmp/r5Evz6CSKz/view.001.fobc (CRAM input).. ok 102: Count -d BC:TGCA -D BC:/tmp/r5Evz6CSKz/view.001.fobc (CRAM input).. ok 103: Filter -D RG:/tmp/r5Evz6CSKz/view.001.fogn (SAM input) .. ok 104: Count -D RG:/tmp/r5Evz6CSKz/view.001.fogn (SAM input) .. ok 105: Filter -D RG:/tmp/r5Evz6CSKz/view.001.fogn (BAM input) .. ok 106: Count -D RG:/tmp/r5Evz6CSKz/view.001.fogn (BAM input) .. ok 107: Filter -D RG:/tmp/r5Evz6CSKz/view.001.fogn (CRAM input).. ok 108: Count -D RG:/tmp/r5Evz6CSKz/view.001.fogn (CRAM input) .. ok 109: Filter -d NE:TGCA (SAM input) .. ok 110: Count -d NE:TGCA (SAM input) .. ok 111: Filter -d NE:TGCA (BAM input) .. ok 112: Count -d NE:TGCA (BAM input) .. ok 113: Filter -d NE:TGCA (CRAM input) .. ok 114: Count -d NE:TGCA (CRAM input) .. ok 115: Filter -d TGCA (SAM input) samtools view: Invalid "tag:value" option: "TGCA" Failed command: /builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/r5Evz6CSKz/view.test115.sam -h -d TGCA /tmp/r5Evz6CSKz/view.001.sam --no-PG .. expected failure 116: Count -d TGCA (SAM input) samtools view: Invalid "tag:value" option: "TGCA" Failed command: /builddir/build/BUILD/samtools-1.15.1/samtools view -c -d TGCA /tmp/r5Evz6CSKz/view.001.sam --no-PG .. expected failure 117: Filter -d TGCA (BAM input) samtools view: Invalid "tag:value" option: "TGCA" Failed command: /builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/r5Evz6CSKz/view.test117.sam -h -d TGCA /tmp/r5Evz6CSKz/view.test001.bam --no-PG .. expected failure 118: Count -d TGCA (BAM input) samtools view: Invalid "tag:value" option: "TGCA" Failed command: /builddir/build/BUILD/samtools-1.15.1/samtools view -c -d TGCA /tmp/r5Evz6CSKz/view.test001.bam --no-PG .. expected failure 119: Filter -d TGCA (CRAM input) samtools view: Invalid "tag:value" option: "TGCA" Failed command: /builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/r5Evz6CSKz/view.test119.sam -h -d TGCA /tmp/r5Evz6CSKz/view.test006.cram --no-PG .. expected failure 120: Count -d TGCA (CRAM input) samtools view: Invalid "tag:value" option: "TGCA" Failed command: /builddir/build/BUILD/samtools-1.15.1/samtools view -c -d TGCA /tmp/r5Evz6CSKz/view.test006.cram --no-PG .. expected failure 121: Filter -D BClong:/tmp/r5Evz6CSKz/view.001.fobc (SAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/r5Evz6CSKz/view.001.fobc" Failed command: /builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/r5Evz6CSKz/view.test121.sam -h -D BClong:/tmp/r5Evz6CSKz/view.001.fobc /tmp/r5Evz6CSKz/view.001.sam --no-PG .. expected failure 122: Count -D BClong:/tmp/r5Evz6CSKz/view.001.fobc (SAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/r5Evz6CSKz/view.001.fobc" Failed command: /builddir/build/BUILD/samtools-1.15.1/samtools view -c -D BClong:/tmp/r5Evz6CSKz/view.001.fobc /tmp/r5Evz6CSKz/view.001.sam --no-PG .. expected failure 123: Filter -D BClong:/tmp/r5Evz6CSKz/view.001.fobc (BAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/r5Evz6CSKz/view.001.fobc" Failed command: /builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/r5Evz6CSKz/view.test123.sam -h -D BClong:/tmp/r5Evz6CSKz/view.001.fobc /tmp/r5Evz6CSKz/view.test001.bam --no-PG .. expected failure 124: Count -D BClong:/tmp/r5Evz6CSKz/view.001.fobc (BAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/r5Evz6CSKz/view.001.fobc" Failed command: /builddir/build/BUILD/samtools-1.15.1/samtools view -c -D BClong:/tmp/r5Evz6CSKz/view.001.fobc /tmp/r5Evz6CSKz/view.test001.bam --no-PG .. expected failure 125: Filter -D BClong:/tmp/r5Evz6CSKz/view.001.fobc (CRAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/r5Evz6CSKz/view.001.fobc" Failed command: /builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/r5Evz6CSKz/view.test125.sam -h -D BClong:/tmp/r5Evz6CSKz/view.001.fobc /tmp/r5Evz6CSKz/view.test006.cram --no-PG .. expected failure 126: Count -D BClong:/tmp/r5Evz6CSKz/view.001.fobc (CRAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/r5Evz6CSKz/view.001.fobc" Failed command: /builddir/build/BUILD/samtools-1.15.1/samtools view -c -D BClong:/tmp/r5Evz6CSKz/view.001.fobc /tmp/r5Evz6CSKz/view.test006.cram --no-PG .. expected failure 127: Filter -d BC:ACGT -d RG:grp2 (SAM input) samtools view: Different tag "BC" was specified before: "RG:grp2" Failed command: /builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/r5Evz6CSKz/view.test127.sam -h -d BC:ACGT -d RG:grp2 /tmp/r5Evz6CSKz/view.001.sam --no-PG .. expected failure 128: Count -d BC:ACGT -d RG:grp2 (SAM input) samtools view: Different tag "BC" was specified before: "RG:grp2" Failed command: /builddir/build/BUILD/samtools-1.15.1/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/r5Evz6CSKz/view.001.sam --no-PG .. expected failure 129: Filter -d BC:ACGT -d RG:grp2 (BAM input) samtools view: Different tag "BC" was specified before: "RG:grp2" Failed command: /builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/r5Evz6CSKz/view.test129.sam -h -d BC:ACGT -d RG:grp2 /tmp/r5Evz6CSKz/view.test001.bam --no-PG .. expected failure 130: Count -d BC:ACGT -d RG:grp2 (BAM input) samtools view: Different tag "BC" was specified before: "RG:grp2" Failed command: /builddir/build/BUILD/samtools-1.15.1/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/r5Evz6CSKz/view.test001.bam --no-PG .. expected failure 131: Filter -d BC:ACGT -d RG:grp2 (CRAM input) samtools view: Different tag "BC" was specified before: "RG:grp2" Failed command: /builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/r5Evz6CSKz/view.test131.sam -h -d BC:ACGT -d RG:grp2 /tmp/r5Evz6CSKz/view.test006.cram --no-PG .. expected failure 132: Count -d BC:ACGT -d RG:grp2 (CRAM input) samtools view: Different tag "BC" was specified before: "RG:grp2" Failed command: /builddir/build/BUILD/samtools-1.15.1/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/r5Evz6CSKz/view.test006.cram --no-PG .. expected failure 133: Filter -d NM:13 (SAM input) .. ok 134: Count -d NM:13 (SAM input) .. ok 135: Filter -d NM:13 (BAM input) .. ok 136: Count -d NM:13 (BAM input) .. ok 137: Filter -d NM:13 (CRAM input) .. ok 138: Count -d NM:13 (CRAM input) .. ok 139: Filter -d ab:z (SAM input) .. ok 140: Count -d ab:z (SAM input) .. ok 141: Filter -d ab:z (BAM input) .. ok 142: Count -d ab:z (BAM input) .. ok 143: Filter -d ab:z (CRAM input) .. ok 144: Count -d ab:z (CRAM input) .. ok 145: Filter -l Library 2 (SAM input) .. ok 146: Count -l Library 2 (SAM input) .. ok 147: Filter -l Library 2 (BAM input) .. ok 148: Count -l Library 2 (BAM input) .. ok 149: Filter -l Library 2 (CRAM input) .. ok 150: Count -l Library 2 (CRAM input) .. ok 151: Filter -l Library 3 (SAM input) .. ok 152: Count -l Library 3 (SAM input) .. ok 153: Filter -l Library 3 (BAM input) .. ok 154: Count -l Library 3 (BAM input) .. ok 155: Filter -l Library 3 (CRAM input) .. ok 156: Count -l Library 3 (CRAM input) .. ok 157: Filter -q 50 (SAM input) .. ok 158: Count -q 50 (SAM input) .. ok 159: Filter -q 50 (BAM input) .. ok 160: Count -q 50 (BAM input) .. ok 161: Filter -q 50 (CRAM input) .. ok 162: Count -q 50 (CRAM input) .. ok 163: Filter -q 99 (SAM input) .. ok 164: Count -q 99 (SAM input) .. ok 165: Filter -q 99 (BAM input) .. ok 166: Count -q 99 (BAM input) .. ok 167: Filter -q 99 (CRAM input) .. ok 168: Count -q 99 (CRAM input) .. ok 169: Filter -q 100 (SAM input) .. ok 170: Count -q 100 (SAM input) .. ok 171: Filter -q 100 (BAM input) .. ok 172: Count -q 100 (BAM input) .. ok 173: Filter -q 100 (CRAM input) .. ok 174: Count -q 100 (CRAM input) .. ok 175: Filter -x fa (SAM input) .. ok 176: Count -x fa (SAM input) .. ok 177: Filter -x fa (BAM input) .. ok 178: Count -x fa (BAM input) .. ok 179: Filter -x fa (CRAM input) .. ok 180: Count -x fa (CRAM input) .. ok 181: Filter -x fa -x ha (SAM input) .. ok 182: Count -x fa -x ha (SAM input) .. ok 183: Filter -x fa -x ha (BAM input) .. ok 184: Count -x fa -x ha (BAM input) .. ok 185: Filter -x fa -x ha (CRAM input) .. ok 186: Count -x fa -x ha (CRAM input) .. ok 187: Filter -x fa,ha (SAM input) .. ok 188: Count -x fa,ha (SAM input) .. ok 189: Filter -x fa,ha (BAM input) .. ok 190: Count -x fa,ha (BAM input) .. ok 191: Filter -x fa,ha (CRAM input) .. ok 192: Count -x fa,ha (CRAM input) .. ok 193: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok 194: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok 195: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok 196: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok 197: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok 198: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok 199: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok 200: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok 201: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok 202: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok 203: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok 204: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok 205: Filter -x fa -r grp2 (SAM input) .. ok 206: Count -x fa -r grp2 (SAM input) .. ok 207: Filter -x fa -r grp2 (BAM input) .. ok 208: Count -x fa -r grp2 (BAM input) .. ok 209: Filter -x fa -r grp2 (CRAM input) .. ok 210: Count -x fa -r grp2 (CRAM input) .. ok 211: Filter -x RG -r grp2 (SAM input) .. ok 212: Count -x RG -r grp2 (SAM input) .. ok 213: Filter -x RG -r grp2 (BAM input) .. ok 214: Count -x RG -r grp2 (BAM input) .. ok 215: Filter -x RG -r grp2 (CRAM input) .. ok 216: Count -x RG -r grp2 (CRAM input) .. ok 217: Filter -m 10 (SAM input) .. ok 218: Count -m 10 (SAM input) .. ok 219: Filter -m 10 (BAM input) .. ok 220: Count -m 10 (BAM input) .. ok 221: Filter -m 10 (CRAM input) .. ok 222: Count -m 10 (CRAM input) .. ok 223: Filter -m 11 (SAM input) .. ok 224: Count -m 11 (SAM input) .. ok 225: Filter -m 11 (BAM input) .. ok 226: Count -m 11 (BAM input) .. ok 227: Filter -m 11 (CRAM input) .. ok 228: Count -m 11 (CRAM input) .. ok 229: Filter -m 15 (SAM input) .. ok 230: Count -m 15 (SAM input) .. ok 231: Filter -m 15 (BAM input) .. ok 232: Count -m 15 (BAM input) .. ok 233: Filter -m 15 (CRAM input) .. ok 234: Count -m 15 (CRAM input) .. ok 235: Filter -m 16 (SAM input) .. ok 236: Count -m 16 (SAM input) .. ok 237: Filter -m 16 (BAM input) .. ok 238: Count -m 16 (BAM input) .. ok 239: Filter -m 16 (CRAM input) .. ok 240: Count -m 16 (CRAM input) .. ok 241: Filter -e !(flag & 128) && (flag & 2) (SAM input) .. ok 242: Count -e !(flag & 128) && (flag & 2) (SAM input) .. ok 243: Filter -e !(flag & 128) && (flag & 2) (BAM input) .. ok 244: Count -e !(flag & 128) && (flag & 2) (BAM input) .. ok 245: Filter -e !(flag & 128) && (flag & 2) (CRAM input) .. ok 246: Count -e !(flag & 128) && (flag & 2) (CRAM input) .. ok 247: Filter -e [BC] (SAM input) .. ok 248: Count -e [BC] (SAM input) .. ok 249: Filter -e [BC] (BAM input) .. ok 250: Count -e [BC] (BAM input) .. ok 251: Filter -e [BC] (CRAM input) .. ok 252: Count -e [BC] (CRAM input) .. ok 253: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (SAM input).. ok 254: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (SAM input).. ok 255: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (BAM input).. ok 256: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (BAM input).. ok 257: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (CRAM input).. ok 258: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (CRAM input).. ok 259: Filter -e mapq >= 50 (SAM input) .. ok 260: Count -e mapq >= 50 (SAM input) .. ok 261: Filter -e mapq >= 50 (BAM input) .. ok 262: Count -e mapq >= 50 (BAM input) .. ok 263: Filter -e mapq >= 50 (CRAM input) .. ok 264: Count -e mapq >= 50 (CRAM input) .. ok 265: Filter -e mapq >= 99 (SAM input) .. ok 266: Count -e mapq >= 99 (SAM input) .. ok 267: Filter -e mapq >= 99 (BAM input) .. ok 268: Count -e mapq >= 99 (BAM input) .. ok 269: Filter -e mapq >= 99 (CRAM input) .. ok 270: Count -e mapq >= 99 (CRAM input) .. ok 271: Filter -e mapq >= 100 (SAM input) .. ok 272: Count -e mapq >= 100 (SAM input) .. ok 273: Filter -e mapq >= 100 (BAM input) .. ok 274: Count -e mapq >= 100 (BAM input) .. ok 275: Filter -e mapq >= 100 (CRAM input) .. ok 276: Count -e mapq >= 100 (CRAM input) .. ok 277: 1bp reads file SAM -> BAM -> SAM .. ok 278: 1bp reads file SAM -> CRAM -> SAM .. ok 278: Region Z (BAM input) .. ok 279: Count Z (BAM input) .. ok 280: Region Z (CRAM input) .. ok 281: Count Z (CRAM input) .. ok 282: Region Z:30 (BAM input) .. ok 283: Count Z:30 (BAM input) .. ok 284: Region Z:30 (CRAM input) .. ok 285: Count Z:30 (CRAM input) .. ok 286: Region Z:20-40 (BAM input) .. ok 287: Count Z:20-40 (BAM input) .. ok 288: Region Z:20-40 (CRAM input) .. ok 289: Count Z:20-40 (CRAM input) .. ok 290: Region ref1 (BAM input) .. ok 291: Count ref1 (BAM input) .. ok 292: Region ref1 (CRAM input) .. ok 293: Count ref1 (CRAM input) .. ok 294: Region ref1:15 (BAM input) .. ok 295: Count ref1:15 (BAM input) .. ok 296: Region ref1:15 (CRAM input) .. ok 297: Count ref1:15 (CRAM input) .. ok 298: Region ref1:15-45 (BAM input) .. ok 299: Count ref1:15-45 (BAM input) .. ok 300: Region ref1:15-45 (CRAM input) .. ok 301: Count ref1:15-45 (CRAM input) .. ok 302: Region ref1:15-45 ref2 (BAM input) .. ok 303: Count ref1:15-45 ref2 (BAM input) .. ok 304: Region ref1:15-45 ref2 (CRAM input) .. ok 305: Count ref1:15-45 ref2 (CRAM input) .. ok 306: Region ref1:15-45 ref2:16 (BAM input) .. ok 307: Count ref1:15-45 ref2:16 (BAM input) .. ok 308: Region ref1:15-45 ref2:16 (CRAM input) .. ok 309: Count ref1:15-45 ref2:16 (CRAM input) .. ok 310: Region ref1:15-45 ref2:16-31 (BAM input) .. ok 311: Count ref1:15-45 ref2:16-31 (BAM input) .. ok 312: Region ref1:15-45 ref2:16-31 (CRAM input) .. ok 313: Count ref1:15-45 ref2:16-31 (CRAM input) .. ok 314: Region ref1:15-15 ref1:45-45 (BAM input) .. ok 315: Count ref1:15-15 ref1:45-45 (BAM input) .. ok 316: Region ref1:15-15 ref1:45-45 (CRAM input) .. ok 317: Count ref1:15-15 ref1:45-45 (CRAM input) .. ok 318: Region -f 128 ref1 (BAM input) .. ok 319: Count -f 128 ref1 (BAM input) .. ok 320: Region -f 128 ref1 (CRAM input) .. ok 321: Count -f 128 ref1 (CRAM input) .. ok 322: Region -q 50 ref1:15-45 (BAM input) .. ok 323: Count -q 50 ref1:15-45 (BAM input) .. ok 324: Region -q 50 ref1:15-45 (CRAM input) .. ok 325: Count -q 50 ref1:15-45 (CRAM input) .. ok 326: Region -r grp2 ref1:15-45 (BAM input) .. ok 327: Count -r grp2 ref1:15-45 (BAM input) .. ok 328: Region -r grp2 ref1:15-45 (CRAM input) .. ok 329: Count -r grp2 ref1:15-45 (CRAM input) .. ok 330: Region * (BAM input) .. ok 331: Count * (BAM input) .. ok 332: Region * (CRAM input) .. ok 333: Count * (CRAM input) .. ok 334: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed (BAM input).. ok 335: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed (BAM input).. ok 336: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed (CRAM input).. ok 337: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed (CRAM input).. ok 338: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed (BAM input).. ok 339: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed (BAM input).. ok 340: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed (CRAM input).. ok 341: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed (CRAM input).. ok 342: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed (BAM input).. ok 343: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed (BAM input).. ok 344: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed (CRAM input).. ok 345: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed (CRAM input).. ok 346: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed (BAM input).. ok 347: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed (BAM input).. ok 348: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed (CRAM input).. ok 349: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed (CRAM input).. ok 350: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (BAM input).. ok 351: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (BAM input).. ok 352: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (CRAM input).. ok 353: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (CRAM input).. ok 354: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (BAM input).. ok 355: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (BAM input).. ok 356: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (CRAM input).. ok 357: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (CRAM input).. ok 358: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (BAM input).. ok 359: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (BAM input).. ok 360: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (CRAM input).. ok 361: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (CRAM input).. ok 362: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (BAM input).. ok 363: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (BAM input).. ok 364: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (CRAM input).. ok 365: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (CRAM input).. ok 366: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (BAM input).. ok 367: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (BAM input).. ok 368: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (CRAM input).. ok 369: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (CRAM input).. ok 370: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (BAM input).. ok 371: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (BAM input).. ok 372: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (CRAM input).. ok 373: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (CRAM input).. ok 374: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (BAM input).. ok 375: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (BAM input).. ok 376: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (CRAM input).. ok 377: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (CRAM input).. ok 378: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 (BAM input).. ok 379: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 (BAM input).. ok 380: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 (CRAM input).. ok 381: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 (CRAM input).. ok 382: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128 (BAM input).. ok 383: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128 (BAM input).. ok 384: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128 (CRAM input).. ok 385: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128 (CRAM input).. ok 386: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5 (BAM input).. ok 387: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5 (BAM input).. ok 388: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5 (CRAM input).. ok 389: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5 (CRAM input).. ok 390: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (BAM input).. ok 391: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (BAM input).. ok 392: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (CRAM input).. ok 393: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (CRAM input).. ok 394: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap (BAM input).. ok 395: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap (BAM input).. ok 396: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap (CRAM input).. ok 397: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap (CRAM input).. ok 398: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (BAM input).. ok 399: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (BAM input).. ok 400: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (CRAM input).. ok 401: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (CRAM input).. ok 402: Make BAM with no M5/UR tags .. ok 403: Add @SQ with -t (SAM -> SAM) .. ok 404: Add @SQ with -T (SAM -> SAM) .. ok 405: Add @SQ with -t (BAM -> SAM) .. ok 406: Add @SQ with -T (BAM -> SAM) .. ok 407: Add @SQ with -t (SAM -> BAM) .. ok 408: Add @SQ with -T (SAM -> BAM) .. ok 409: Add @SQ with -t (BAM -> BAM) .. ok 410: Add @SQ with -T (BAM -> BAM) .. ok 411: Add @SQ with -t (SAM -> CRAM) .. ok 412: Add @SQ with -T (SAM -> CRAM) .. ok 413: Add @SQ with -t (BAM -> CRAM) .. ok 414: Add @SQ with -T (BAM -> CRAM) .. ok 415: Make CRAM with no UR field .. ok 416: Decoding CRAM with no UR field via -T .. ok 417: CIGAR B-operator removal .. ok 418: Big SAM -> BAM .. ok 419: Big SAM -> BAM (2 threads) .. ok 420: Big SAM -> BAM (4 threads) .. ok 421: Big SAM -> CRAM .. ok 422: Big SAM -> CRAM (2 threads) .. ok 423: Big SAM -> CRAM (4 threads) .. ok 424: Subsample 0.2 (SAM input) ............ ok 425: Subsample 0.5 (SAM input) ............ ok 426: Subsample 0.8 (SAM input) ............ ok 427: Subsample 0.2 (BAM input) ............ ok 428: Subsample 0.5 (BAM input) ............ ok 429: Subsample 0.8 (BAM input) ............ ok 430: Subsample 0.2 (CRAM input) ............ ok 431: Subsample 0.5 (CRAM input) ............ ok 432: Subsample 0.8 (CRAM input) ............ ok 433: SAM add PG .. ok 434: Unset dup flag, remove dt and do tags .. ok 435: Unmap dup flagged reads. .. ok 436: Unmap dup flagged reads. .. ok 437: fetch pairs .. ok 438: fetch pairs .. ok 439: fetch pairs .. ok test_head: /builddir/build/BUILD/samtools-1.15.1/samtools head /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam .. ok test_head: /builddir/build/BUILD/samtools-1.15.1/samtools head -h 0 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam .. ok test_head: /builddir/build/BUILD/samtools-1.15.1/samtools head -h 1 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam .. ok test_head: /builddir/build/BUILD/samtools-1.15.1/samtools head -h 5 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam .. ok test_head: /builddir/build/BUILD/samtools-1.15.1/samtools head -h 29 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam .. ok test_head: /builddir/build/BUILD/samtools-1.15.1/samtools head -h 30 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam .. ok test_head: /builddir/build/BUILD/samtools-1.15.1/samtools head -n 0 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam .. ok test_head: /builddir/build/BUILD/samtools-1.15.1/samtools head -n 1 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam .. ok test_head: /builddir/build/BUILD/samtools-1.15.1/samtools head -n 5 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam .. ok test_head: /builddir/build/BUILD/samtools-1.15.1/samtools head -h 5 -n 5 < /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam .. ok test_cat: Generating test data file .................. done Generate BAM file #1 .. ok Generate CRAM file #1 .. ok Generating test data file .................. done Generate BAM file #2 .. ok Generate CRAM file #2 .. ok Generating test data file .................. done Generate BAM file #3 .. ok Generate CRAM file #3 .. ok Generating test data file .................. done Generate BAM file #4 .. ok Generate CRAM file #4 .. ok 1: cat BAM files .. ok 2: cat recompressed BAM files .. ok 3: cat CRAM files .. ok 4: cat BAM files to stdout .. ok 5: cat recompressed BAM files to stdout .. ok 6: cat CRAM files to stdout .. ok 7: cat BAM files with new header .. ok 8: cat recompressed BAM files with new header .. ok 9: cat CRAM files with new header .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import -0 test/bam2fq/1.1.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import -s test/bam2fq/1.1.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import -s test/bam2fq/5.s.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/5.1.fq.expected test/bam2fq/5.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import -i -1 test/bam2fq/12.1.fq.expected -2 test/bam2fq/12.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -i --index-format 'i*i*' -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import --barcode-tag OX -i -1 test/bam2fq/12.1.fq.expected -2 test/bam2fq/12.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq --barcode-tag OX -i --index-format 'i*i*' -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import -T "" -1 test/bam2fq/6.1.fq.expected -2 test/bam2fq/6.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -T RG,BC,QT -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import -T "*" -1 test/bam2fq/7.1.fq.expected -2 test/bam2fq/7.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -T RG,BC,QT,MD,ia -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -R rgid .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -r ID:rgid .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -r '@RG ID:rgid' .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import test/import/2.interleaved.fq -T "" .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import test/import/3.interleaved.fq -i .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import test/import/4.aux.fq -T "*" .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import test/import/4.aux.fq -T "" .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import test/import/4.aux.fq -T XZ,XA,AA .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import --i1 test/import/5-i1.fq --i2 test/import/5-i2.fq --r1 test/import/5-r1.fq --r2 test/import/5-r2.fq .. ok test_import: /builddir/build/BUILD/samtools-1.15.1/samtools import --i1 test/import/5-i1.fq --i2 test/import/5-i2.fq --r1 test/import/5-r1.fq --r2 test/import/5-r2.fq --barcode-tag OX --quality-tag BZ .. ok test_bam2fq: Generate BAM file .. ok Generate CRAM file .. ok 1: fastq (SAM input) [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 36 reads .. ok 2: fastq -n (SAM input) [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 36 reads .. ok 3: fastq (BAM input) [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 36 reads .. ok 4: fastq -n (BAM input) [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 36 reads .. ok 5: fastq (CRAM input) [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 36 reads .. ok 6: fastq -n (CRAM input) [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 36 reads .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.002.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.003.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq --barcode-tag BC --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.010.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq --barcode-tag BC -N --index-format 'n*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc_split.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -t -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -t -T MD,ia -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq --barcode-tag BC -i --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq --barcode-tag BC -i --index-format 'i*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -i --index-format 'i*i*' -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.703.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fasta -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fa -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fa /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -o /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -s /tmp/r5Evz6CSKz/bam2fq.discard.s.fq -0 /tmp/r5Evz6CSKz/bam2fq.discard.0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -T ba,bb,bc,bd,be,bf,bg /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.013.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq --index-format 'i8n1i8' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i1.fq --i2 /builddir/build/BUILD/samtools-1.15.1/test/i2.fq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.014.sam .. ok test_bam2fq: Generate BAM file (2 threads) .. ok Generate CRAM file (2 threads) .. ok 1: fastq (SAM input) (2 threads) [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 36 reads .. ok 2: fastq -n (SAM input) (2 threads) [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 36 reads .. ok 3: fastq (BAM input) (2 threads) [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 36 reads .. ok 4: fastq -n (BAM input) (2 threads) [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 36 reads .. ok 5: fastq (CRAM input) (2 threads) [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 36 reads .. ok 6: fastq -n (CRAM input) (2 threads) [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 36 reads .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.002.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.003.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.010.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -N --index-format 'n*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc_split.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -t -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -t -T MD,ia -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -i --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -i --index-format 'i*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -i --index-format 'i*i*' -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.703.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fasta -@ 2 -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fa -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fa /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -o /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -s /tmp/r5Evz6CSKz/bam2fq.discard.s.fq -0 /tmp/r5Evz6CSKz/bam2fq.discard.0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -T ba,bb,bc,bd,be,bf,bg /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.013.sam .. ok test_bam2fq: /builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --index-format 'i8n1i8' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i1.fq --i2 /builddir/build/BUILD/samtools-1.15.1/test/i2.fq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.014.sam .. ok test_depad: Generate BAM file .. ok depad (SAM input) .. ok depad -s (SAM input) .. ok depad -u (SAM input) .. ok depad -1 (SAM input) .. ok depad (BAM input) .. ok depad -s (BAM input) .. ok depad -u (BAM input) .. ok depad -1 (BAM input) .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/1_map_cigar.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/1_map_cigar_large.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/2_equal_cigar_full_seq.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/2_equal_cigar_full_seq_large.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/3_map_cigar_equal_seq.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/3_map_cigar_equal_seq_large.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/4_X_cigar_full_seq.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/4_X_cigar_full_seq_large.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/5_insert_cigar.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/5_insert_cigar_large.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa -i 0 /builddir/build/BUILD/samtools-1.15.1/test/stat/5_insert_cigar.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/7_supp.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/7_supp_large.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/8_secondary.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/8_secondary_large.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats -S RG -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/1_map_cigar.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats -S RG -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/10_map_cigar.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats -t /builddir/build/BUILD/samtools-1.15.1/test/stat/11.stats.targets /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam ref1:10-24 ref1:30-46 ref1:39-56 | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats -g 4 -t /builddir/build/BUILD/samtools-1.15.1/test/stat/11.stats.targets /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats -g 4 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam ref1:10-24 ref1:30-46 ref1:39-56 | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_3reads.bed | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -p -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_3reads.bed | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_2reads.bed | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -p -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_2reads.bed | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_ok.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_ok_ox_bz.sam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_fail_bc_length.sam | tail -n+4 /builddir/build/BUILD/samtools-1.15.1/test/stat/13.barcodes.fail.expected: No such file or directory .. expected failure test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_fail_hyphen.sam | tail -n+4 /builddir/build/BUILD/samtools-1.15.1/test/stat/13.barcodes.fail.expected: No such file or directory .. expected failure test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_fail_qt_length.sam | tail -n+4 /builddir/build/BUILD/samtools-1.15.1/test/stat/13.barcodes.fail.expected: No such file or directory .. expected failure test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats -I s1 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats -I grp2 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats -I grp3 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4 .. ok test_stats: /builddir/build/BUILD/samtools-1.15.1/samtools stats -I Sample /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4 .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.bam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam -b /tmp/AF_mqbKrE7 - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -r -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -cp -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a_regex.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b_regex.sam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -o - -s 1 -O sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -p -c -t PG -O SAM - /tmp/r5Evz6CSKz/merge.tag.1.bam /tmp/r5Evz6CSKz/merge.tag.2.bam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -p -c -n -t PG -O SAM - /tmp/r5Evz6CSKz/merge.tag.3.bam /tmp/r5Evz6CSKz/merge.tag.4.bam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge --no-PG -O SAM - /builddir/build/BUILD/samtools-1.15.1/test/merge/test_no_pg_rg_co.sam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge --no-PG -O SAM -L /builddir/build/BUILD/samtools-1.15.1/test/merge/merge.bed - /tmp/r5Evz6CSKz/merge.bed.1.bam /tmp/r5Evz6CSKz/merge.bed.2.bam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.bam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam -b /tmp/V_RYNR28mj - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -r -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -cp -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a_regex.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b_regex.sam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -o - -s 1 -O sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -p -c -t PG -O SAM - /tmp/r5Evz6CSKz/merge.tag.1.bam /tmp/r5Evz6CSKz/merge.tag.2.bam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -p -c -n -t PG -O SAM - /tmp/r5Evz6CSKz/merge.tag.3.bam /tmp/r5Evz6CSKz/merge.tag.4.bam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 --no-PG -O SAM - /builddir/build/BUILD/samtools-1.15.1/test/merge/test_no_pg_rg_co.sam .. ok test_merge: /builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 --no-PG -O SAM -L /builddir/build/BUILD/samtools-1.15.1/test/merge/merge.bed - /tmp/r5Evz6CSKz/merge.bed.1.bam /tmp/r5Evz6CSKz/merge.bed.2.bam .. ok test_sort: /builddir/build/BUILD/samtools-1.15.1/samtools sort /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/r5Evz6CSKz/sortout .. ok test_sort: /builddir/build/BUILD/samtools-1.15.1/samtools sort -f /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/r5Evz6CSKz/sortout.bam .. ok test_sort: /builddir/build/BUILD/samtools-1.15.1/samtools sort -o /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/r5Evz6CSKz/sorttmp .. ok test_sort: /builddir/build/BUILD/samtools-1.15.1/samtools sort -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o - .. ok test_sort: /builddir/build/BUILD/samtools-1.15.1/samtools sort -n -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o - .. ok test_sort: /builddir/build/BUILD/samtools-1.15.1/samtools sort -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o - .. ok test_sort: /builddir/build/BUILD/samtools-1.15.1/samtools sort -n -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o - .. ok test_sort: /builddir/build/BUILD/samtools-1.15.1/samtools sort -t AS -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o - .. ok test_sort: /builddir/build/BUILD/samtools-1.15.1/samtools sort -t FI -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o - .. ok test_sort: /builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/r5Evz6CSKz/sortout .. ok test_sort: /builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -f /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/r5Evz6CSKz/sortout.bam .. ok test_sort: /builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -o /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/r5Evz6CSKz/sorttmp .. ok test_sort: /builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o - .. ok test_sort: /builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -n -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o - .. ok test_sort: /builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o - .. ok test_sort: /builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -n -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o - .. ok test_sort: /builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -t AS -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o - .. ok test_sort: /builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -t FI -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o - .. ok test_collate: /builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam -O /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam .. ok test_collate: /builddir/build/BUILD/samtools-1.15.1/samtools collate -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate1.tmp.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam .. ok test_collate: /builddir/build/BUILD/samtools-1.15.1/samtools collate -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp .. ok test_collate: /builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate3.tmp .. ok test_collate: /builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam -f /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/1_fast_collate.sam .. ok test_collate: /builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam -f -r 4 /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/2_fast_collate_with_tmp.sam .. ok test_collate: /builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam -O /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam .. ok test_collate: /builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate1.tmp.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam .. ok test_collate: /builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp .. ok test_collate: /builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate3.tmp .. ok test_collate: /builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam -f /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/1_fast_collate.sam .. ok test_collate: /builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam -f -r 4 /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/2_fast_collate_with_tmp.sam .. ok test_fixmate: /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/1_coord_sort.sam - ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname. .. expected failure test_fixmate: /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/2_isize_overflow.sam - .. ok test_fixmate: /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/3_reverse_read_pp_lt.sam - .. ok test_fixmate: /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/4_reverse_read_pp_equal.sam - .. ok test_fixmate: /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/5_ct.sam - .. ok test_fixmate: /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/6_ct_replace.sam - .. ok test_fixmate: /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/7_two_read_mapped.sam - .. ok test_fixmate: /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/8_isize_overflow_64bit.sam - .. ok test_fixmate: /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/1_coord_sort.sam - ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname. .. expected failure test_fixmate: /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/2_isize_overflow.sam - .. ok test_fixmate: /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/3_reverse_read_pp_lt.sam - .. ok test_fixmate: /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/4_reverse_read_pp_equal.sam - .. ok test_fixmate: /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/5_ct.sam - .. ok test_fixmate: /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/6_ct_replace.sam - .. ok test_fixmate: /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/7_two_read_mapped.sam - .. ok test_fixmate: /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/8_isize_overflow_64bit.sam - .. ok /builddir/build/BUILD/samtools-1.15.1/samtools calmd -uAr /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.1.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.ref.fa .. ok /builddir/build/BUILD/samtools-1.15.1/samtools calmd -@ 2 -uAr /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.1.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.ref.fa .. ok test_idxstat: /builddir/build/BUILD/samtools-1.15.1/samtools idxstats /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam .. ok test_idxstat: /builddir/build/BUILD/samtools-1.15.1/samtools idxstats /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.cram .. ok test_idxstat: /builddir/build/BUILD/samtools-1.15.1/samtools idxstats /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam .. ok test_quickcheck: /builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/1.quickcheck.badeof.bam .. ok test_quickcheck: /builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/2.quickcheck.badheader.bam .. ok test_quickcheck: /builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/3.quickcheck.ok.bam .. ok test_quickcheck: /builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/4.quickcheck.ok.bam .. ok test_quickcheck: /builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/5.quickcheck.scramble30.truncated.cram .. ok test_quickcheck: /builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/6.quickcheck.cram21.ok.cram .. ok test_quickcheck: /builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/7.quickcheck.cram30.ok.cram .. ok test_quickcheck: /builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/8.quickcheck.cram21.truncated.cram .. ok test_quickcheck: /builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/9.quickcheck.cram30.truncated.cram .. ok test_quickcheck: /builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam .. ok test_quickcheck: /builddir/build/BUILD/samtools-1.15.1/samtools quickcheck -v /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/1.quickcheck.badeof.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/2.quickcheck.badheader.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/3.quickcheck.ok.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/4.quickcheck.ok.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/5.quickcheck.scramble30.truncated.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/6.quickcheck.cram21.ok.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/7.quickcheck.cram30.ok.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/8.quickcheck.cram21.truncated.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/9.quickcheck.cram30.truncated.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam | sed 's,.*/quickcheck/,,' .. ok test_quickcheck: /builddir/build/BUILD/samtools-1.15.1/samtools quickcheck -uv /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam | sed 's,.*/quickcheck/,,' .. ok test_reheader: /builddir/build/BUILD/samtools-1.15.1/samtools reheader /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.bam | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/ VN:.*//' .. ok test_reheader: /builddir/build/BUILD/samtools-1.15.1/samtools reheader /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v21.cram | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/ VN:.*//' .. ok test_reheader: /builddir/build/BUILD/samtools-1.15.1/samtools reheader /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/ VN:.*//' .. ok test_reheader: /builddir/build/BUILD/samtools-1.15.1/samtools reheader --in-place /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v21.cram && /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v21.cram | perl -pe 's/ VN:.*//' .. ok test_reheader: /builddir/build/BUILD/samtools-1.15.1/samtools reheader --in-place /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram && /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram | perl -pe 's/ VN:.*//' .. ok test_reheader: /builddir/build/BUILD/samtools-1.15.1/samtools reheader -c "sed 's/2014 Genome/2019 Genome/g'" /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.bam | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/ VN:.*//' .. ok test_reheader: /builddir/build/BUILD/samtools-1.15.1/samtools reheader -c "sed 's/2014 Genome/2019 Genome/g'" /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/ VN:.*//' .. ok test_addrprg: /builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -m overwrite_all /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam .. ok test_addrprg: /builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -m orphan_only /builddir/build/BUILD/samtools-1.15.1/test/addrprg/2_fixup_orphan.sam .. ok test_addrprg: /builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -R '1#9' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam .. ok test_addrprg: /builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -r '@RG\tID:1#8\tCN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam .. ok test_addrprg: /builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -m overwrite_all -R '1#8' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam .. ok test_addrprg: /builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -r 'ID:1#8' -r 'CN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam .. ok test_addrprg: /builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -w -r '@RG\tID:1#8\tCN:Sanger\tDS:Testing the editing code.' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam .. ok test_addrprg: /builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -m overwrite_all /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam .. ok test_addrprg: /builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -m orphan_only /builddir/build/BUILD/samtools-1.15.1/test/addrprg/2_fixup_orphan.sam .. ok test_addrprg: /builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -R '1#9' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam .. ok test_addrprg: /builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -r '@RG\tID:1#8\tCN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam .. ok test_addrprg: /builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -m overwrite_all -R '1#8' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam .. ok test_addrprg: /builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -r 'ID:1#8' -r 'CN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam .. ok test_addrprg: /builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -w -r '@RG\tID:1#8\tCN:Sanger\tDS:Testing the editing code.' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/1_name_sort.sam - ERR: [markdup] error: queryname sorted, must be sorted by coordinate. .. expected failure test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/2_bad_order.sam - ERR: [markdup] error: not in coordinate sorted order. .. expected failure test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/3_missing_mc.sam - ERR: [markdup] error: no MC tag. Please run samtools fixmate on file first. [markdup] error: unable to assign pair hash key. .. expected failure test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/4_missing_ms.sam - ERR: [markdup] error: no ms score tag. Please run samtools fixmate on file first. [markdup] error: no ms score tag. Please run samtools fixmate on file first. .. expected failure test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/5_markdup.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam -r --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/6_remove_dups.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/7_mark_supp_dup.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 100 --mode s -t -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/8_optical_dup.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t --include-fails -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/9_optical_dup_qcfail.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t -O sam --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+):([[:digit:]]+)$' --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+):([[:print:]]+)' --coords-order xyt --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+)' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+)$' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/12_optical_chain_regex.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/1_name_sort.sam - ERR: [markdup] error: queryname sorted, must be sorted by coordinate. .. expected failure test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/2_bad_order.sam - ERR: [markdup] error: not in coordinate sorted order. .. expected failure test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/3_missing_mc.sam - ERR: [markdup] error: no MC tag. Please run samtools fixmate on file first. [markdup] error: unable to assign pair hash key. .. expected failure test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/4_missing_ms.sam - ERR: [markdup] error: no ms score tag. Please run samtools fixmate on file first. [markdup] error: no ms score tag. Please run samtools fixmate on file first. .. expected failure test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/5_markdup.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam -r --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/6_remove_dups.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/7_mark_supp_dup.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/8_optical_dup.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t --include-fails -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/9_optical_dup_qcfail.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+):([[:digit:]]+)$' --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+):([[:print:]]+)' --coords-order xyt --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+)' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam - .. ok test_markdup: /builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+)$' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/12_optical_chain_regex.sam - .. ok test_bedcov: /builddir/build/BUILD/samtools-1.15.1/samtools bedcov /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bed /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bam .. ok test_bedcov: /builddir/build/BUILD/samtools-1.15.1/samtools bedcov -j /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bed /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bam .. ok test_bedcov: /builddir/build/BUILD/samtools-1.15.1/samtools bedcov -g512 -G2048 /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov_gG.bed /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bam .. ok test_split: /builddir/build/BUILD/samtools-1.15.1/samtools split --output-fmt sam -u /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.15.1/test/split/split.sam .. ok test_split: /builddir/build/BUILD/samtools-1.15.1/samtools split -@ 2 --output-fmt sam -u /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.15.1/test/split/split.sam .. ok test_large_positions: /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /tmp/r5Evz6CSKz/longref.sam.gz .. ok test_large_positions: /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /tmp/r5Evz6CSKz/longref.sam.gz CHROMOSOME_I:10000000114-10000000168 .. ok test_large_positions: /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG -L /builddir/build/BUILD/samtools-1.15.1/test/large_pos/test.bed /tmp/r5Evz6CSKz/longref.sam.gz .. ok test_large_positions: /builddir/build/BUILD/samtools-1.15.1/samtools sort -O sam --no-PG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref_name.sam .. ok test_large_positions: /builddir/build/BUILD/samtools-1.15.1/samtools merge -O sam --no-PG - /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref.sam /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref2.sam .. ok test_large_positions: /builddir/build/BUILD/samtools-1.15.1/samtools depth /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref.sam .. ok test_large_positions: /builddir/build/BUILD/samtools-1.15.1/samtools depth -b /builddir/build/BUILD/samtools-1.15.1/test/large_pos/test.bed /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref.sam .. ok test_large_positions: /builddir/build/BUILD/samtools-1.15.1/samtools tview -d T -p CHROMOSOME_I:10000000000 /tmp/r5Evz6CSKz/longref.sam.gz .. ok test_large_positions: /builddir/build/BUILD/samtools-1.15.1/samtools sort -O sam --no-PG -n -m 10M test/large_pos/longref3.sam | /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam --no-PG - - | /builddir/build/BUILD/samtools-1.15.1/samtools sort -O sam --no-PG -m 10M .. ok test_ampliconclip: /builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam .. ok test_ampliconclip: /builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam .. ok test_ampliconclip: /builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam .. ok test_ampliconclip: /builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --filter-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam .. ok test_ampliconclip: /builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --fail-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam .. ok test_ampliconclip: /builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --original -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam .. ok test_ampliconclip: /builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam .. ok test_ampliconclip: /builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --both-ends -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/2_both_test_data.sam .. ok test_ampliconclip: /builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam .. ok test_ampliconclip: /builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam .. ok test_ampliconclip: /builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam .. ok test_ampliconclip: /builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --filter-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam .. ok test_ampliconclip: /builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --fail-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam .. ok test_ampliconclip: /builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --original -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam .. ok test_ampliconclip: /builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam .. ok test_ampliconclip: /builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --both-ends -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/2_both_test_data.sam .. ok test_ampliconstats: /builddir/build/BUILD/samtools-1.15.1/samtools ampliconstats -@ 2 -S -t 50 -d 1,20,100 /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_hard_clipped.expected.sam /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_soft_clipped.expected.sam /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_soft_clipped_strand.expected.sam /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/2_both_clipped.expected.sam | egrep -v 'Samtools version|Command line' .. ok test_ampliconstats: /builddir/build/BUILD/samtools-1.15.1/samtools ampliconstats -@ 2 -c 0 /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/multi_ref.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconstats/mixed_clipped.sam | egrep -v 'Samtools version|Command line' .. ok Number of tests: total .. 807 passed .. 776 failed .. 0 expected failure .. 31 unexpected pass .. 0 test/merge/test_bam_translate test/merge/test_bam_translate.tmp test/merge/test_rtrans_build test/merge/test_trans_tbl_init cd test/mpileup && AWK="gawk" ../regression.sh mpileup.reg === Testing mpileup.reg regressions === EXPECTED FAIL: Task failed, but expected to fail; when running $samtools mpileup -ABQ0 -a -l xx.bed3 xx#depth3.bam Expected passes: 118 Unexpected passes: 0 Expected failures: 1 Unexpected failures: 0 => PASS cd test/mpileup && AWK="gawk" ../regression.sh depth.reg === Testing depth.reg regressions === EXPECTED FAIL: Task failed, but expected to fail; when running $samtools depth -a -b xx.bed3 xx#depth3.bam Expected passes: 47 Unexpected passes: 0 Expected failures: 1 Unexpected failures: 0 => PASS cd test/consensus && AWK="gawk" ../regression.sh consensus.reg === Testing consensus.reg regressions === Expected passes: 62 Unexpected passes: 0 Expected failures: 0 Unexpected failures: 0 => PASS + RPM_EC=0 ++ jobs -p + exit 0 Processing files: samtools-1.15.1-1.fc38.ppc64le Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.4ONmYu + umask 022 + cd /builddir/build/BUILD + cd samtools-1.15.1 + DOCDIR=/builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/share/doc/samtools + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/share/doc/samtools + cp -pr AUTHORS /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/share/doc/samtools + cp -pr ChangeLog.old /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/share/doc/samtools + cp -pr NEWS /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/share/doc/samtools + cp -pr examples/ /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/share/doc/samtools + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.JxEm3A + umask 022 + cd /builddir/build/BUILD + cd samtools-1.15.1 + LICENSEDIR=/builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/share/licenses/samtools + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/share/licenses/samtools + cp -pr LICENSE /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le/usr/share/licenses/samtools + RPM_EC=0 ++ jobs -p + exit 0 Provides: samtools = 1.15.1-1.fc38 samtools(ppc-64) = 1.15.1-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/perl ld64.so.2()(64bit) ld64.so.2(GLIBC_2.23)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libncursesw.so.6()(64bit) libtinfo.so.6()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: samtools-debugsource-1.15.1-1.fc38.ppc64le Provides: samtools-debugsource = 1.15.1-1.fc38 samtools-debugsource(ppc-64) = 1.15.1-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: samtools-debuginfo-1.15.1-1.fc38.ppc64le Provides: debuginfo(build-id) = 17c7145200cd0f6b1e10f79bf9640533be9100ee debuginfo(build-id) = 1cbae4bf9cb9a273c243ad813baa65514d7c49b9 debuginfo(build-id) = 81a987f09864f201f2086f65506c1e8f2249baf3 debuginfo(build-id) = 865cad001f9b789b7a66cf2102be4ed759bcc325 debuginfo(build-id) = 88d4cc3647f0085612e3713650edbd26f8d18f26 debuginfo(build-id) = adae7fb87da379dcbbede34dc5c54e31f69370ae debuginfo(build-id) = bd1c20b024d17c0cc727d9c771004ae1cce5ed5e samtools-debuginfo = 1.15.1-1.fc38 samtools-debuginfo(ppc-64) = 1.15.1-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: samtools-debugsource(ppc-64) = 1.15.1-1.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le Wrote: /builddir/build/RPMS/samtools-1.15.1-1.fc38.ppc64le.rpm Wrote: /builddir/build/RPMS/samtools-debugsource-1.15.1-1.fc38.ppc64le.rpm Wrote: /builddir/build/RPMS/samtools-debuginfo-1.15.1-1.fc38.ppc64le.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.h6keM0 + umask 022 + cd /builddir/build/BUILD + cd samtools-1.15.1 + /usr/bin/rm -rf /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.ppc64le + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.LEXmtM + umask 022 + cd /builddir/build/BUILD + rm -rf samtools-1.15.1 samtools-1.15.1.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild samtools-1.15.1-1.fc38.src.rpm Finish: build phase for samtools-1.15.1-1.fc38.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-ppc64le-1672293995.574551/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-ppc64le-1672293995.574551/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-ppc64le-1672293995.574551/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/samtools-1.15.1-1.fc38.src.rpm) Config(child) 1 minutes 34 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool