Warning: Permanently added '100.26.101.221' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5168138 --chroot fedora-rawhide-i386 --detached
Version: 0.62
PID: 4928
Logging PID: 4929
Task:
{'appstream': False,
'background': True,
'build_id': 5168138,
'buildroot_pkgs': [],
'chroot': 'fedora-rawhide-i386',
'enable_net': False,
'fedora_review': False,
'git_hash': '33bdcab4226f5c2a02e7ec7b561e9397017feec6',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/bionetgen',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'bionetgen',
'package_version': '2.8.4-3',
'project_dirname': 'gcc-13-test',
'project_name': 'gcc-13-test',
'project_owner': 'jakub',
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jakub/gcc-13-test/fedora-rawhide-i386/',
'id': 'copr_base',
'name': 'Copr repository'},
{'baseurl': 'https://jakub.fedorapeople.org/fedora-gcc13-$arch/',
'id': 'https_jakub_fedorapeople_org_fedora_gcc13_arch',
'name': 'Additional repo https_jakub_fedorapeople_org_fedora_gcc13_arch'}],
'sandbox': 'jakub/gcc-13-test--jakub',
'source_json': {},
'source_type': None,
'submitter': 'jakub',
'tags': [],
'task_id': '5168138-fedora-rawhide-i386',
'timeout': 115200,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/bionetgen /var/lib/copr-rpmbuild/workspace/workdir-puici_4j/bionetgen --depth 500 --no-single-branch --recursive
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/bionetgen', '/var/lib/copr-rpmbuild/workspace/workdir-puici_4j/bionetgen', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-puici_4j/bionetgen'...
Running: git checkout 33bdcab4226f5c2a02e7ec7b561e9397017feec6
cmd: ['git', 'checkout', '33bdcab4226f5c2a02e7ec7b561e9397017feec6']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-puici_4j/bionetgen
rc: 0
stdout:
stderr: Note: switching to '33bdcab4226f5c2a02e7ec7b561e9397017feec6'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at 33bdcab automatic import of bionetgen
Running: copr-distgit-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-puici_4j/bionetgen
rc: 0
stdout:
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading bionetgen-BioNetGen-2.8.4.tar.gz
INFO: Calling: curl -H Pragma: -o bionetgen-BioNetGen-2.8.4.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jakub/gcc-13-test/bionetgen/bionetgen-BioNetGen-2.8.4.tar.gz/md5/e26ad465557b02afad362a856dc9135d/bionetgen-BioNetGen-2.8.4.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 40.0M 100 40.0M 0 0 117M 0 --:--:-- --:--:-- --:--:-- 117M
INFO: Reading stdout from command: md5sum bionetgen-BioNetGen-2.8.4.tar.gz
Running (timeout=115200): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-puici_4j/bionetgen/bionetgen.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-puici_4j/bionetgen --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1671798920.414241 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-puici_4j/bionetgen/bionetgen.spec) Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1671798920.414241/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start(bootstrap): dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity
This system is not registered with an entitlement server. You can use subscription-manager to register.
Copr repository 40 MB/s | 3.6 MB 00:00
Additional repo https_jakub_fedorapeople_org_fe 393 kB/s | 86 kB 00:00
local 75 MB/s | 60 MB 00:00
Dependencies resolved.
=========================================================================================================================
Package Arch Version Repository Size
=========================================================================================================================
Installing:
dnf noarch 4.14.0-1.fc38 local 469 k
dnf-plugins-core noarch 4.3.1-1.fc38 local 34 k
Installing dependencies:
alternatives i686 1.21-1.fc38 local 38 k
audit-libs i686 3.0.9-2.fc38 local 122 k
basesystem noarch 11-14.fc37 local 7.0 k
bash i686 5.2.9-3.fc38 copr_base 1.8 M
bzip2-libs i686 1.0.8-12.fc37 local 41 k
ca-certificates noarch 2022.2.54-5.fc37 local 829 k
coreutils i686 9.1-8.fc38 local 1.1 M
coreutils-common i686 9.1-8.fc38 local 2.0 M
crypto-policies noarch 20221215-1.gita4c31a3.fc38 local 63 k
curl i686 7.87.0-1.fc38 local 347 k
cyrus-sasl-lib i686 2.1.28-8.fc38 local 857 k
dbus-libs i686 1:1.14.4-1.fc38 local 167 k
dnf-data noarch 4.14.0-1.fc38 local 43 k
elfutils-default-yama-scope noarch 0.188-3.fc38 local 15 k
elfutils-libelf i686 0.188-3.fc38 local 203 k
elfutils-libs i686 0.188-3.fc38 local 286 k
expat i686 2.5.0-1.fc38 local 115 k
fedora-gpg-keys noarch 38-0.3 local 115 k
fedora-release noarch 38-0.6 local 11 k
fedora-release-common noarch 38-0.6 local 21 k
fedora-release-identity-basic noarch 38-0.6 local 11 k
fedora-repos noarch 38-0.3 local 10 k
fedora-repos-rawhide noarch 38-0.3 local 9.7 k
file-libs i686 5.42-4.fc37 local 684 k
filesystem i686 3.18-2.fc37 local 1.1 M
findutils i686 1:4.9.0-2.fc37 local 492 k
gawk i686 5.1.1-4.fc37 local 1.0 M
gdbm-libs i686 1:1.23-2.fc37 local 60 k
glib2 i686 2.74.1-2.fc38 local 2.8 M
glibc i686 2.36.9000-19.fc38 local 1.9 M
glibc-common i686 2.36.9000-19.fc38 local 315 k
glibc-minimal-langpack i686 2.36.9000-19.fc38 local 30 k
gmp i686 1:6.2.1-3.fc37 local 305 k
gnupg2 i686 2.3.8-1.fc38 local 2.6 M
gnutls i686 3.7.8-9.fc38 local 1.1 M
gpgme i686 1.17.1-3.fc38 local 218 k
grep i686 3.8-1.fc38 local 289 k
ima-evm-utils i686 1.4-6.fc37 local 63 k
json-c i686 0.16-3.fc38 local 44 k
keyutils-libs i686 1.6.1-5.fc37 local 32 k
krb5-libs i686 1.20.1-3.fc38 local 763 k
libacl i686 2.3.1-4.fc38 copr_base 25 k
libarchive i686 3.6.1-3.fc38 local 443 k
libassuan i686 2.5.5-5.fc37 local 69 k
libattr i686 2.5.1-5.fc38 copr_base 19 k
libb2 i686 0.98.1-7.fc37 local 35 k
libblkid i686 2.38.1-3.fc38 local 116 k
libbrotli i686 1.0.9-9.fc37 local 317 k
libcap i686 2.48-5.fc37 local 68 k
libcap-ng i686 0.8.3-4.fc38 local 33 k
libcom_err i686 1.46.5-3.fc37 local 26 k
libcomps i686 0.1.18-4.fc37 local 84 k
libcurl i686 7.87.0-1.fc38 local 327 k
libdnf i686 0.68.0-1.fc38 local 722 k
libevent i686 2.1.12-7.fc37 local 279 k
libffi i686 3.4.4-1.fc38 local 36 k
libfsverity i686 1.4-8.fc37 local 20 k
libgcc i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 101 k
libgcrypt i686 1.10.1-6.fc38 local 484 k
libgomp i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 304 k
libgpg-error i686 1.46-1.fc38 local 225 k
libidn2 i686 2.3.4-1.fc38 local 154 k
libksba i686 1.6.3-1.fc38 local 161 k
libmodulemd i686 2.14.0-4.fc37 local 241 k
libmount i686 2.38.1-3.fc38 local 141 k
libnghttp2 i686 1.51.0-1.fc38 local 80 k
libnsl2 i686 2.0.0-4.fc37 local 31 k
libpsl i686 0.21.1-6.fc37 local 64 k
librepo i686 1.15.1-1.fc38 local 102 k
libreport-filesystem noarch 2.17.6-1.fc38 local 14 k
libselinux i686 3.4-6.fc38 local 91 k
libsemanage i686 3.4-6.fc38 local 128 k
libsepol i686 3.4-4.fc38 local 336 k
libsigsegv i686 2.14-3.fc37 local 27 k
libsmartcols i686 2.38.1-3.fc38 local 65 k
libsolv i686 0.7.22-3.fc37 local 428 k
libssh i686 0.10.4-2.fc38 local 222 k
libssh-config noarch 0.10.4-2.fc38 local 8.8 k
libstdc++ i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 857 k
libtasn1 i686 4.19.0-1.fc38 local 76 k
libtirpc i686 1.3.3-0.fc37 local 101 k
libunistring i686 1.0-2.fc37 local 551 k
libuuid i686 2.38.1-3.fc38 local 28 k
libverto i686 0.3.2-4.fc37 local 21 k
libxcrypt i686 4.4.33-5.fc38 local 123 k
libxml2 i686 2.10.3-2.fc38 local 745 k
libyaml i686 0.2.5-8.fc37 local 62 k
libzstd i686 1.5.2-3.fc37 local 274 k
lua-libs i686 5.4.4-6.fc38 local 148 k
lz4-libs i686 1.9.3-5.fc37 local 72 k
mpdecimal i686 2.5.1-4.fc37 local 106 k
mpfr i686 4.1.1-2.fc38 local 637 k
ncurses-base noarch 6.3-5.20221126.fc38 local 61 k
ncurses-libs i686 6.3-5.20221126.fc38 local 348 k
nettle i686 3.8-2.fc37 local 430 k
npth i686 1.6-10.fc38 local 24 k
openldap i686 2.6.3-1.fc38 local 273 k
openssl-libs i686 1:3.0.5-6.fc38 local 2.1 M
p11-kit i686 0.24.1-5.fc38 local 335 k
p11-kit-trust i686 0.24.1-5.fc38 local 135 k
pcre2 i686 10.40-1.fc37.1 local 234 k
pcre2-syntax noarch 10.40-1.fc37.1 local 142 k
popt i686 1.19-1.fc38 local 61 k
publicsuffix-list-dafsa noarch 20221208-1.fc38 local 59 k
python-pip-wheel noarch 22.3.1-1.fc38 local 1.4 M
python-setuptools-wheel noarch 65.5.1-1.fc38 local 715 k
python3 i686 3.11.1-1.fc38 local 27 k
python3-dateutil noarch 1:2.8.2-4.fc37 local 350 k
python3-dbus i686 1.3.2-1.fc38 local 150 k
python3-distro noarch 1.8.0-1.fc38 local 45 k
python3-dnf noarch 4.14.0-1.fc38 local 567 k
python3-dnf-plugins-core noarch 4.3.1-1.fc38 local 263 k
python3-gpg i686 1.17.1-3.fc38 local 277 k
python3-hawkey i686 0.68.0-1.fc38 local 111 k
python3-libcomps i686 0.1.18-4.fc37 local 51 k
python3-libdnf i686 0.68.0-1.fc38 local 828 k
python3-libs i686 3.11.1-1.fc38 local 9.3 M
python3-rpm i686 4.18.0-8.fc38 local 95 k
python3-six noarch 1.16.0-8.fc37 local 42 k
readline i686 8.2-2.fc38 local 218 k
rpm i686 4.18.0-8.fc38 local 543 k
rpm-build-libs i686 4.18.0-8.fc38 local 102 k
rpm-libs i686 4.18.0-8.fc38 local 341 k
rpm-sequoia i686 1.2.0-1.fc38 local 924 k
rpm-sign-libs i686 4.18.0-8.fc38 local 27 k
sed i686 4.8-11.fc37 local 300 k
setup noarch 2.14.3-1.fc38 local 146 k
shadow-utils i686 2:4.13-3.fc38 local 1.2 M
sqlite-libs i686 3.40.0-1.fc38 local 705 k
systemd-libs i686 252.4-598.fc38 local 662 k
tpm2-tss i686 4.0.0-0.1.rc2.fc38 local 603 k
tzdata noarch 2022g-1.fc38 local 432 k
xz-libs i686 5.2.9-1.fc38 local 101 k
zchunk-libs i686 1.2.3-1.fc38 local 54 k
zlib i686 1.2.13-1.fc38 local 92 k
Transaction Summary
=========================================================================================================================
Install 137 Packages
Total download size: 57 M
Installed size: 199 M
Downloading Packages:
(1/137): libattr-2.5.1-5.fc38.i686.rpm 331 kB/s | 19 kB 00:00
(2/137): libacl-2.3.1-4.fc38.i686.rpm 425 kB/s | 25 kB 00:00
(3/137): bash-5.2.9-3.fc38.i686.rpm 26 MB/s | 1.8 MB 00:00
(4/137): libgcc-13.0.0-0.4.fc38.i686.rpm 874 kB/s | 101 kB 00:00
(5/137): alternatives-1.21-1.fc38.i686.rpm 1.2 MB/s | 38 kB 00:00
(6/137): audit-libs-3.0.9-2.fc38.i686.rpm 23 MB/s | 122 kB 00:00
(7/137): basesystem-11-14.fc37.noarch.rpm 2.7 MB/s | 7.0 kB 00:00
(8/137): bzip2-libs-1.0.8-12.fc37.i686.rpm 4.0 MB/s | 41 kB 00:00
(9/137): ca-certificates-2022.2.54-5.fc37.noarc 44 MB/s | 829 kB 00:00
(10/137): libgomp-13.0.0-0.4.fc38.i686.rpm 1.6 MB/s | 304 kB 00:00
(11/137): libstdc++-13.0.0-0.4.fc38.i686.rpm 5.1 MB/s | 857 kB 00:00
(12/137): coreutils-9.1-8.fc38.i686.rpm 21 MB/s | 1.1 MB 00:00
(13/137): crypto-policies-20221215-1.gita4c31a3 1.8 MB/s | 63 kB 00:00
(14/137): curl-7.87.0-1.fc38.i686.rpm 39 MB/s | 347 kB 00:00
(15/137): dbus-libs-1.14.4-1.fc38.i686.rpm 16 MB/s | 167 kB 00:00
(16/137): cyrus-sasl-lib-2.1.28-8.fc38.i686.rpm 35 MB/s | 857 kB 00:00
(17/137): dnf-4.14.0-1.fc38.noarch.rpm 38 MB/s | 469 kB 00:00
(18/137): dnf-data-4.14.0-1.fc38.noarch.rpm 9.7 MB/s | 43 kB 00:00
(19/137): dnf-plugins-core-4.3.1-1.fc38.noarch. 8.2 MB/s | 34 kB 00:00
(20/137): elfutils-default-yama-scope-0.188-3.f 4.3 MB/s | 15 kB 00:00
(21/137): coreutils-common-9.1-8.fc38.i686.rpm 22 MB/s | 2.0 MB 00:00
(22/137): elfutils-libelf-0.188-3.fc38.i686.rpm 27 MB/s | 203 kB 00:00
(23/137): elfutils-libs-0.188-3.fc38.i686.rpm 35 MB/s | 286 kB 00:00
(24/137): expat-2.5.0-1.fc38.i686.rpm 23 MB/s | 115 kB 00:00
(25/137): fedora-release-38-0.6.noarch.rpm 2.8 MB/s | 11 kB 00:00
(26/137): fedora-release-common-38-0.6.noarch.r 5.5 MB/s | 21 kB 00:00
(27/137): fedora-gpg-keys-38-0.3.noarch.rpm 16 MB/s | 115 kB 00:00
(28/137): fedora-release-identity-basic-38-0.6. 4.6 MB/s | 11 kB 00:00
(29/137): fedora-repos-38-0.3.noarch.rpm 3.1 MB/s | 10 kB 00:00
(30/137): fedora-repos-rawhide-38-0.3.noarch.rp 2.8 MB/s | 9.7 kB 00:00
(31/137): file-libs-5.42-4.fc37.i686.rpm 48 MB/s | 684 kB 00:00
(32/137): findutils-4.9.0-2.fc37.i686.rpm 38 MB/s | 492 kB 00:00
(33/137): gdbm-libs-1.23-2.fc37.i686.rpm 11 MB/s | 60 kB 00:00
(34/137): filesystem-3.18-2.fc37.i686.rpm 38 MB/s | 1.1 MB 00:00
(35/137): gawk-5.1.1-4.fc37.i686.rpm 46 MB/s | 1.0 MB 00:00
(36/137): glibc-common-2.36.9000-19.fc38.i686.r 32 MB/s | 315 kB 00:00
(37/137): glibc-minimal-langpack-2.36.9000-19.f 2.9 MB/s | 30 kB 00:00
(38/137): gmp-6.2.1-3.fc37.i686.rpm 20 MB/s | 305 kB 00:00
(39/137): glibc-2.36.9000-19.fc38.i686.rpm 39 MB/s | 1.9 MB 00:00
(40/137): glib2-2.74.1-2.fc38.i686.rpm 47 MB/s | 2.8 MB 00:00
(41/137): gpgme-1.17.1-3.fc38.i686.rpm 19 MB/s | 218 kB 00:00
(42/137): gnutls-3.7.8-9.fc38.i686.rpm 50 MB/s | 1.1 MB 00:00
(43/137): grep-3.8-1.fc38.i686.rpm 29 MB/s | 289 kB 00:00
(44/137): ima-evm-utils-1.4-6.fc37.i686.rpm 12 MB/s | 63 kB 00:00
(45/137): json-c-0.16-3.fc38.i686.rpm 10 MB/s | 44 kB 00:00
(46/137): keyutils-libs-1.6.1-5.fc37.i686.rpm 7.3 MB/s | 32 kB 00:00
(47/137): gnupg2-2.3.8-1.fc38.i686.rpm 54 MB/s | 2.6 MB 00:00
(48/137): libassuan-2.5.5-5.fc37.i686.rpm 15 MB/s | 69 kB 00:00
(49/137): libarchive-3.6.1-3.fc38.i686.rpm 26 MB/s | 443 kB 00:00
(50/137): libb2-0.98.1-7.fc37.i686.rpm 9.1 MB/s | 35 kB 00:00
(51/137): libblkid-2.38.1-3.fc38.i686.rpm 15 MB/s | 116 kB 00:00
(52/137): krb5-libs-1.20.1-3.fc38.i686.rpm 27 MB/s | 763 kB 00:00
(53/137): libbrotli-1.0.9-9.fc37.i686.rpm 35 MB/s | 317 kB 00:00
(54/137): libcap-2.48-5.fc37.i686.rpm 12 MB/s | 68 kB 00:00
(55/137): libcom_err-1.46.5-3.fc37.i686.rpm 5.8 MB/s | 26 kB 00:00
(56/137): libcap-ng-0.8.3-4.fc38.i686.rpm 5.2 MB/s | 33 kB 00:00
(57/137): libcomps-0.1.18-4.fc37.i686.rpm 17 MB/s | 84 kB 00:00
(58/137): libevent-2.1.12-7.fc37.i686.rpm 34 MB/s | 279 kB 00:00
(59/137): libcurl-7.87.0-1.fc38.i686.rpm 24 MB/s | 327 kB 00:00
(60/137): libffi-3.4.4-1.fc38.i686.rpm 8.0 MB/s | 36 kB 00:00
(61/137): libfsverity-1.4-8.fc37.i686.rpm 4.9 MB/s | 20 kB 00:00
(62/137): libdnf-0.68.0-1.fc38.i686.rpm 35 MB/s | 722 kB 00:00
(63/137): libgpg-error-1.46-1.fc38.i686.rpm 23 MB/s | 225 kB 00:00
(64/137): libidn2-2.3.4-1.fc38.i686.rpm 12 MB/s | 154 kB 00:00
(65/137): libksba-1.6.3-1.fc38.i686.rpm 17 MB/s | 161 kB 00:00
(66/137): libgcrypt-1.10.1-6.fc38.i686.rpm 18 MB/s | 484 kB 00:00
(67/137): libmount-2.38.1-3.fc38.i686.rpm 9.7 MB/s | 141 kB 00:00
(68/137): libnghttp2-1.51.0-1.fc38.i686.rpm 7.9 MB/s | 80 kB 00:00
(69/137): libnsl2-2.0.0-4.fc37.i686.rpm 5.9 MB/s | 31 kB 00:00
(70/137): libpsl-0.21.1-6.fc37.i686.rpm 11 MB/s | 64 kB 00:00
(71/137): libmodulemd-2.14.0-4.fc37.i686.rpm 9.5 MB/s | 241 kB 00:00
(72/137): libreport-filesystem-2.17.6-1.fc38.no 3.7 MB/s | 14 kB 00:00
(73/137): librepo-1.15.1-1.fc38.i686.rpm 17 MB/s | 102 kB 00:00
(74/137): libselinux-3.4-6.fc38.i686.rpm 19 MB/s | 91 kB 00:00
(75/137): libsemanage-3.4-6.fc38.i686.rpm 29 MB/s | 128 kB 00:00
(76/137): libsigsegv-2.14-3.fc37.i686.rpm 4.9 MB/s | 27 kB 00:00
(77/137): libsmartcols-2.38.1-3.fc38.i686.rpm 11 MB/s | 65 kB 00:00
(78/137): libsepol-3.4-4.fc38.i686.rpm 19 MB/s | 336 kB 00:00
(79/137): libssh-0.10.4-2.fc38.i686.rpm 27 MB/s | 222 kB 00:00
(80/137): libsolv-0.7.22-3.fc37.i686.rpm 29 MB/s | 428 kB 00:00
(81/137): libtasn1-4.19.0-1.fc38.i686.rpm 20 MB/s | 76 kB 00:00
(82/137): libssh-config-0.10.4-2.fc38.noarch.rp 1.6 MB/s | 8.8 kB 00:00
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(85/137): libuuid-2.38.1-3.fc38.i686.rpm 3.8 MB/s | 28 kB 00:00
(86/137): libxcrypt-4.4.33-5.fc38.i686.rpm 24 MB/s | 123 kB 00:00
(87/137): libunistring-1.0-2.fc37.i686.rpm 35 MB/s | 551 kB 00:00
(88/137): libyaml-0.2.5-8.fc37.i686.rpm 15 MB/s | 62 kB 00:00
(89/137): libxml2-2.10.3-2.fc38.i686.rpm 54 MB/s | 745 kB 00:00
(90/137): libzstd-1.5.2-3.fc37.i686.rpm 24 MB/s | 274 kB 00:00
(91/137): lz4-libs-1.9.3-5.fc37.i686.rpm 11 MB/s | 72 kB 00:00
(92/137): lua-libs-5.4.4-6.fc38.i686.rpm 9.9 MB/s | 148 kB 00:00
(93/137): mpdecimal-2.5.1-4.fc37.i686.rpm 20 MB/s | 106 kB 00:00
(94/137): ncurses-base-6.3-5.20221126.fc38.noar 15 MB/s | 61 kB 00:00
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(96/137): npth-1.6-10.fc38.i686.rpm 5.8 MB/s | 24 kB 00:00
(97/137): nettle-3.8-2.fc37.i686.rpm 39 MB/s | 430 kB 00:00
(98/137): openldap-2.6.3-1.fc38.i686.rpm 33 MB/s | 273 kB 00:00
(99/137): ncurses-libs-6.3-5.20221126.fc38.i686 16 MB/s | 348 kB 00:00
(100/137): p11-kit-0.24.1-5.fc38.i686.rpm 23 MB/s | 335 kB 00:00
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(103/137): pcre2-syntax-10.40-1.fc37.1.noarch.r 18 MB/s | 142 kB 00:00
(104/137): popt-1.19-1.fc38.i686.rpm 15 MB/s | 61 kB 00:00
(105/137): publicsuffix-list-dafsa-20221208-1.f 17 MB/s | 59 kB 00:00
(106/137): python-setuptools-wheel-65.5.1-1.fc3 38 MB/s | 715 kB 00:00
(107/137): python3-3.11.1-1.fc38.i686.rpm 6.3 MB/s | 27 kB 00:00
(108/137): openssl-libs-3.0.5-6.fc38.i686.rpm 30 MB/s | 2.1 MB 00:00
(109/137): python3-dateutil-2.8.2-4.fc37.noarch 31 MB/s | 350 kB 00:00
(110/137): python3-distro-1.8.0-1.fc38.noarch.r 7.9 MB/s | 45 kB 00:00
(111/137): python3-dbus-1.3.2-1.fc38.i686.rpm 14 MB/s | 150 kB 00:00
(112/137): python3-dnf-4.14.0-1.fc38.noarch.rpm 46 MB/s | 567 kB 00:00
(113/137): python3-dnf-plugins-core-4.3.1-1.fc3 17 MB/s | 263 kB 00:00
(114/137): python-pip-wheel-22.3.1-1.fc38.noarc 23 MB/s | 1.4 MB 00:00
(115/137): python3-gpg-1.17.1-3.fc38.i686.rpm 29 MB/s | 277 kB 00:00
(116/137): python3-hawkey-0.68.0-1.fc38.i686.rp 17 MB/s | 111 kB 00:00
(117/137): python3-libcomps-0.1.18-4.fc37.i686. 9.8 MB/s | 51 kB 00:00
(118/137): python3-rpm-4.18.0-8.fc38.i686.rpm 25 MB/s | 95 kB 00:00
(119/137): python3-six-1.16.0-8.fc37.noarch.rpm 14 MB/s | 42 kB 00:00
(120/137): readline-8.2-2.fc38.i686.rpm 34 MB/s | 218 kB 00:00
(121/137): rpm-4.18.0-8.fc38.i686.rpm 21 MB/s | 543 kB 00:00
(122/137): rpm-build-libs-4.18.0-8.fc38.i686.rp 15 MB/s | 102 kB 00:00
(123/137): rpm-libs-4.18.0-8.fc38.i686.rpm 26 MB/s | 341 kB 00:00
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(126/137): rpm-sequoia-1.2.0-1.fc38.i686.rpm 59 MB/s | 924 kB 00:00
(127/137): setup-2.14.3-1.fc38.noarch.rpm 25 MB/s | 146 kB 00:00
(128/137): sed-4.8-11.fc37.i686.rpm 13 MB/s | 300 kB 00:00
(129/137): shadow-utils-4.13-3.fc38.i686.rpm 47 MB/s | 1.2 MB 00:00
(130/137): sqlite-libs-3.40.0-1.fc38.i686.rpm 24 MB/s | 705 kB 00:00
(131/137): tpm2-tss-4.0.0-0.1.rc2.fc38.i686.rpm 53 MB/s | 603 kB 00:00
(132/137): tzdata-2022g-1.fc38.noarch.rpm 44 MB/s | 432 kB 00:00
(133/137): systemd-libs-252.4-598.fc38.i686.rpm 17 MB/s | 662 kB 00:00
(134/137): xz-libs-5.2.9-1.fc38.i686.rpm 17 MB/s | 101 kB 00:00
(135/137): zchunk-libs-1.2.3-1.fc38.i686.rpm 13 MB/s | 54 kB 00:00
(136/137): zlib-1.2.13-1.fc38.i686.rpm 19 MB/s | 92 kB 00:00
(137/137): python3-libs-3.11.1-1.fc38.i686.rpm 42 MB/s | 9.3 MB 00:00
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Total 58 MB/s | 57 MB 00:00
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Verifying : libsmartcols-2.38.1-3.fc38.i686 78/137
Verifying : libsolv-0.7.22-3.fc37.i686 79/137
Verifying : libssh-0.10.4-2.fc38.i686 80/137
Verifying : libssh-config-0.10.4-2.fc38.noarch 81/137
Verifying : libtasn1-4.19.0-1.fc38.i686 82/137
Verifying : libtirpc-1.3.3-0.fc37.i686 83/137
Verifying : libunistring-1.0-2.fc37.i686 84/137
Verifying : libuuid-2.38.1-3.fc38.i686 85/137
Verifying : libverto-0.3.2-4.fc37.i686 86/137
Verifying : libxcrypt-4.4.33-5.fc38.i686 87/137
Verifying : libxml2-2.10.3-2.fc38.i686 88/137
Verifying : libyaml-0.2.5-8.fc37.i686 89/137
Verifying : libzstd-1.5.2-3.fc37.i686 90/137
Verifying : lua-libs-5.4.4-6.fc38.i686 91/137
Verifying : lz4-libs-1.9.3-5.fc37.i686 92/137
Verifying : mpdecimal-2.5.1-4.fc37.i686 93/137
Verifying : mpfr-4.1.1-2.fc38.i686 94/137
Verifying : ncurses-base-6.3-5.20221126.fc38.noarch 95/137
Verifying : ncurses-libs-6.3-5.20221126.fc38.i686 96/137
Verifying : nettle-3.8-2.fc37.i686 97/137
Verifying : npth-1.6-10.fc38.i686 98/137
Verifying : openldap-2.6.3-1.fc38.i686 99/137
Verifying : openssl-libs-1:3.0.5-6.fc38.i686 100/137
Verifying : p11-kit-0.24.1-5.fc38.i686 101/137
Verifying : p11-kit-trust-0.24.1-5.fc38.i686 102/137
Verifying : pcre2-10.40-1.fc37.1.i686 103/137
Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 104/137
Verifying : popt-1.19-1.fc38.i686 105/137
Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 106/137
Verifying : python-pip-wheel-22.3.1-1.fc38.noarch 107/137
Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 108/137
Verifying : python3-3.11.1-1.fc38.i686 109/137
Verifying : python3-dateutil-1:2.8.2-4.fc37.noarch 110/137
Verifying : python3-dbus-1.3.2-1.fc38.i686 111/137
Verifying : python3-distro-1.8.0-1.fc38.noarch 112/137
Verifying : python3-dnf-4.14.0-1.fc38.noarch 113/137
Verifying : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 114/137
Verifying : python3-gpg-1.17.1-3.fc38.i686 115/137
Verifying : python3-hawkey-0.68.0-1.fc38.i686 116/137
Verifying : python3-libcomps-0.1.18-4.fc37.i686 117/137
Verifying : python3-libdnf-0.68.0-1.fc38.i686 118/137
Verifying : python3-libs-3.11.1-1.fc38.i686 119/137
Verifying : python3-rpm-4.18.0-8.fc38.i686 120/137
Verifying : python3-six-1.16.0-8.fc37.noarch 121/137
Verifying : readline-8.2-2.fc38.i686 122/137
Verifying : rpm-4.18.0-8.fc38.i686 123/137
Verifying : rpm-build-libs-4.18.0-8.fc38.i686 124/137
Verifying : rpm-libs-4.18.0-8.fc38.i686 125/137
Verifying : rpm-sequoia-1.2.0-1.fc38.i686 126/137
Verifying : rpm-sign-libs-4.18.0-8.fc38.i686 127/137
Verifying : sed-4.8-11.fc37.i686 128/137
Verifying : setup-2.14.3-1.fc38.noarch 129/137
Verifying : shadow-utils-2:4.13-3.fc38.i686 130/137
Verifying : sqlite-libs-3.40.0-1.fc38.i686 131/137
Verifying : systemd-libs-252.4-598.fc38.i686 132/137
Verifying : tpm2-tss-4.0.0-0.1.rc2.fc38.i686 133/137
Verifying : tzdata-2022g-1.fc38.noarch 134/137
Verifying : xz-libs-5.2.9-1.fc38.i686 135/137
Verifying : zchunk-libs-1.2.3-1.fc38.i686 136/137
Verifying : zlib-1.2.13-1.fc38.i686 137/137
Installed products updated.
Installed:
alternatives-1.21-1.fc38.i686
audit-libs-3.0.9-2.fc38.i686
basesystem-11-14.fc37.noarch
bash-5.2.9-3.fc38.i686
bzip2-libs-1.0.8-12.fc37.i686
ca-certificates-2022.2.54-5.fc37.noarch
coreutils-9.1-8.fc38.i686
coreutils-common-9.1-8.fc38.i686
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
curl-7.87.0-1.fc38.i686
cyrus-sasl-lib-2.1.28-8.fc38.i686
dbus-libs-1:1.14.4-1.fc38.i686
dnf-4.14.0-1.fc38.noarch
dnf-data-4.14.0-1.fc38.noarch
dnf-plugins-core-4.3.1-1.fc38.noarch
elfutils-default-yama-scope-0.188-3.fc38.noarch
elfutils-libelf-0.188-3.fc38.i686
elfutils-libs-0.188-3.fc38.i686
expat-2.5.0-1.fc38.i686
fedora-gpg-keys-38-0.3.noarch
fedora-release-38-0.6.noarch
fedora-release-common-38-0.6.noarch
fedora-release-identity-basic-38-0.6.noarch
fedora-repos-38-0.3.noarch
fedora-repos-rawhide-38-0.3.noarch
file-libs-5.42-4.fc37.i686
filesystem-3.18-2.fc37.i686
findutils-1:4.9.0-2.fc37.i686
gawk-5.1.1-4.fc37.i686
gdbm-libs-1:1.23-2.fc37.i686
glib2-2.74.1-2.fc38.i686
glibc-2.36.9000-19.fc38.i686
glibc-common-2.36.9000-19.fc38.i686
glibc-minimal-langpack-2.36.9000-19.fc38.i686
gmp-1:6.2.1-3.fc37.i686
gnupg2-2.3.8-1.fc38.i686
gnutls-3.7.8-9.fc38.i686
gpgme-1.17.1-3.fc38.i686
grep-3.8-1.fc38.i686
ima-evm-utils-1.4-6.fc37.i686
json-c-0.16-3.fc38.i686
keyutils-libs-1.6.1-5.fc37.i686
krb5-libs-1.20.1-3.fc38.i686
libacl-2.3.1-4.fc38.i686
libarchive-3.6.1-3.fc38.i686
libassuan-2.5.5-5.fc37.i686
libattr-2.5.1-5.fc38.i686
libb2-0.98.1-7.fc37.i686
libblkid-2.38.1-3.fc38.i686
libbrotli-1.0.9-9.fc37.i686
libcap-2.48-5.fc37.i686
libcap-ng-0.8.3-4.fc38.i686
libcom_err-1.46.5-3.fc37.i686
libcomps-0.1.18-4.fc37.i686
libcurl-7.87.0-1.fc38.i686
libdnf-0.68.0-1.fc38.i686
libevent-2.1.12-7.fc37.i686
libffi-3.4.4-1.fc38.i686
libfsverity-1.4-8.fc37.i686
libgcc-13.0.0-0.4.fc38.i686
libgcrypt-1.10.1-6.fc38.i686
libgomp-13.0.0-0.4.fc38.i686
libgpg-error-1.46-1.fc38.i686
libidn2-2.3.4-1.fc38.i686
libksba-1.6.3-1.fc38.i686
libmodulemd-2.14.0-4.fc37.i686
libmount-2.38.1-3.fc38.i686
libnghttp2-1.51.0-1.fc38.i686
libnsl2-2.0.0-4.fc37.i686
libpsl-0.21.1-6.fc37.i686
librepo-1.15.1-1.fc38.i686
libreport-filesystem-2.17.6-1.fc38.noarch
libselinux-3.4-6.fc38.i686
libsemanage-3.4-6.fc38.i686
libsepol-3.4-4.fc38.i686
libsigsegv-2.14-3.fc37.i686
libsmartcols-2.38.1-3.fc38.i686
libsolv-0.7.22-3.fc37.i686
libssh-0.10.4-2.fc38.i686
libssh-config-0.10.4-2.fc38.noarch
libstdc++-13.0.0-0.4.fc38.i686
libtasn1-4.19.0-1.fc38.i686
libtirpc-1.3.3-0.fc37.i686
libunistring-1.0-2.fc37.i686
libuuid-2.38.1-3.fc38.i686
libverto-0.3.2-4.fc37.i686
libxcrypt-4.4.33-5.fc38.i686
libxml2-2.10.3-2.fc38.i686
libyaml-0.2.5-8.fc37.i686
libzstd-1.5.2-3.fc37.i686
lua-libs-5.4.4-6.fc38.i686
lz4-libs-1.9.3-5.fc37.i686
mpdecimal-2.5.1-4.fc37.i686
mpfr-4.1.1-2.fc38.i686
ncurses-base-6.3-5.20221126.fc38.noarch
ncurses-libs-6.3-5.20221126.fc38.i686
nettle-3.8-2.fc37.i686
npth-1.6-10.fc38.i686
openldap-2.6.3-1.fc38.i686
openssl-libs-1:3.0.5-6.fc38.i686
p11-kit-0.24.1-5.fc38.i686
p11-kit-trust-0.24.1-5.fc38.i686
pcre2-10.40-1.fc37.1.i686
pcre2-syntax-10.40-1.fc37.1.noarch
popt-1.19-1.fc38.i686
publicsuffix-list-dafsa-20221208-1.fc38.noarch
python-pip-wheel-22.3.1-1.fc38.noarch
python-setuptools-wheel-65.5.1-1.fc38.noarch
python3-3.11.1-1.fc38.i686
python3-dateutil-1:2.8.2-4.fc37.noarch
python3-dbus-1.3.2-1.fc38.i686
python3-distro-1.8.0-1.fc38.noarch
python3-dnf-4.14.0-1.fc38.noarch
python3-dnf-plugins-core-4.3.1-1.fc38.noarch
python3-gpg-1.17.1-3.fc38.i686
python3-hawkey-0.68.0-1.fc38.i686
python3-libcomps-0.1.18-4.fc37.i686
python3-libdnf-0.68.0-1.fc38.i686
python3-libs-3.11.1-1.fc38.i686
python3-rpm-4.18.0-8.fc38.i686
python3-six-1.16.0-8.fc37.noarch
readline-8.2-2.fc38.i686
rpm-4.18.0-8.fc38.i686
rpm-build-libs-4.18.0-8.fc38.i686
rpm-libs-4.18.0-8.fc38.i686
rpm-sequoia-1.2.0-1.fc38.i686
rpm-sign-libs-4.18.0-8.fc38.i686
sed-4.8-11.fc37.i686
setup-2.14.3-1.fc38.noarch
shadow-utils-2:4.13-3.fc38.i686
sqlite-libs-3.40.0-1.fc38.i686
systemd-libs-252.4-598.fc38.i686
tpm2-tss-4.0.0-0.1.rc2.fc38.i686
tzdata-2022g-1.fc38.noarch
xz-libs-5.2.9-1.fc38.i686
zchunk-libs-1.2.3-1.fc38.i686
zlib-1.2.13-1.fc38.i686
Complete!
Finish(bootstrap): dnf install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1671798920.414241/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 13 MB/s | 3.6 MB 00:00
Additional repo https_jakub_fedorapeople_org_fe 41 kB/s | 86 kB 00:02
local 59 MB/s | 60 MB 00:01
Dependencies resolved.
=========================================================================================================================
Package Arch Version Repository Size
=========================================================================================================================
Installing group/module packages:
bash i686 5.2.9-3.fc38 copr_base 1.8 M
bzip2 i686 1.0.8-12.fc37 local 53 k
coreutils i686 9.1-8.fc38 local 1.1 M
cpio i686 2.13-13.fc38 local 275 k
diffutils i686 3.8-3.fc37 local 375 k
fedora-release noarch 38-0.6 local 11 k
findutils i686 1:4.9.0-2.fc37 local 492 k
gawk i686 5.1.1-4.fc37 local 1.0 M
glibc-minimal-langpack i686 2.36.9000-19.fc38 local 30 k
grep i686 3.8-1.fc38 local 289 k
gzip i686 1.12-2.fc37 local 157 k
info i686 7.0.1-1.fc38 local 183 k
patch i686 2.7.6-17.fc37 local 137 k
redhat-rpm-config noarch 235-1.fc38 local 74 k
rpm-build i686 4.18.0-8.fc38 local 69 k
sed i686 4.8-11.fc37 local 300 k
shadow-utils i686 2:4.13-3.fc38 local 1.2 M
tar i686 2:1.34-5.fc38 local 892 k
unzip i686 6.0-58.fc38 local 177 k
util-linux i686 2.38.1-3.fc38 local 2.3 M
which i686 2.21-36.fc38 local 42 k
xz i686 5.2.9-1.fc38 local 300 k
Installing dependencies:
alternatives i686 1.21-1.fc38 local 38 k
ansible-srpm-macros noarch 1-8.1.fc38 local 8.6 k
audit-libs i686 3.0.9-2.fc38 local 122 k
authselect i686 1.4.2-1.fc38 copr_base 141 k
authselect-libs i686 1.4.2-1.fc38 copr_base 239 k
basesystem noarch 11-14.fc37 local 7.0 k
binutils i686 2.39-6.fc38 local 5.6 M
binutils-gold i686 2.39-6.fc38 local 841 k
bzip2-libs i686 1.0.8-12.fc37 local 41 k
ca-certificates noarch 2022.2.54-5.fc37 local 829 k
coreutils-common i686 9.1-8.fc38 local 2.0 M
cracklib i686 2.9.7-30.fc38 local 81 k
crypto-policies noarch 20221215-1.gita4c31a3.fc38 local 63 k
curl i686 7.87.0-1.fc38 local 347 k
cyrus-sasl-lib i686 2.1.28-8.fc38 local 857 k
debugedit i686 5.0-5.fc37 local 78 k
dwz i686 0.15-1.fc38 local 144 k
ed i686 1.18-2.fc37 local 78 k
efi-srpm-macros noarch 5-6.fc37 local 22 k
elfutils i686 0.188-3.fc38 local 540 k
elfutils-debuginfod-client i686 0.188-3.fc38 local 41 k
elfutils-default-yama-scope noarch 0.188-3.fc38 local 15 k
elfutils-libelf i686 0.188-3.fc38 local 203 k
elfutils-libs i686 0.188-3.fc38 local 286 k
fedora-gpg-keys noarch 38-0.3 local 115 k
fedora-release-common noarch 38-0.6 local 21 k
fedora-release-identity-basic noarch 38-0.6 local 11 k
fedora-repos noarch 38-0.3 local 10 k
fedora-repos-rawhide noarch 38-0.3 local 9.7 k
file i686 5.42-4.fc37 local 49 k
file-libs i686 5.42-4.fc37 local 684 k
filesystem i686 3.18-2.fc37 local 1.1 M
fonts-srpm-macros noarch 1:2.0.5-10.fc38 local 26 k
fpc-srpm-macros noarch 1.3-6.fc37 local 7.7 k
gdb-minimal i686 12.1-10.fc38 local 3.9 M
gdbm-libs i686 1:1.23-2.fc37 local 60 k
ghc-srpm-macros noarch 1.5.0-7.fc37 local 7.8 k
glibc i686 2.36.9000-19.fc38 local 1.9 M
glibc-common i686 2.36.9000-19.fc38 local 315 k
glibc-gconv-extra i686 2.36.9000-19.fc38 local 1.6 M
gmp i686 1:6.2.1-3.fc37 local 305 k
gnat-srpm-macros noarch 4-16.fc37 local 8.3 k
go-srpm-macros noarch 3.2.0-1.fc38 local 27 k
jansson i686 2.13.1-5.fc37 local 46 k
kernel-srpm-macros noarch 1.0-15.fc37 local 9.4 k
keyutils-libs i686 1.6.1-5.fc37 local 32 k
krb5-libs i686 1.20.1-3.fc38 local 763 k
libacl i686 2.3.1-4.fc38 copr_base 25 k
libarchive i686 3.6.1-3.fc38 local 443 k
libattr i686 2.5.1-5.fc38 copr_base 19 k
libblkid i686 2.38.1-3.fc38 local 116 k
libbrotli i686 1.0.9-9.fc37 local 317 k
libcap i686 2.48-5.fc37 local 68 k
libcap-ng i686 0.8.3-4.fc38 local 33 k
libcom_err i686 1.46.5-3.fc37 local 26 k
libcurl i686 7.87.0-1.fc38 local 327 k
libdb i686 5.3.28-54.fc38 local 827 k
libeconf i686 0.4.0-4.fc37 local 29 k
libevent i686 2.1.12-7.fc37 local 279 k
libfdisk i686 2.38.1-3.fc38 local 173 k
libffi i686 3.4.4-1.fc38 local 36 k
libgcc i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 101 k
libgomp i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 304 k
libidn2 i686 2.3.4-1.fc38 local 154 k
libmount i686 2.38.1-3.fc38 local 141 k
libnghttp2 i686 1.51.0-1.fc38 local 80 k
libnsl2 i686 2.0.0-4.fc37 local 31 k
libpkgconf i686 1.8.0-3.fc37 local 38 k
libpsl i686 0.21.1-6.fc37 local 64 k
libpwquality i686 1.4.4-11.fc37 local 106 k
libselinux i686 3.4-6.fc38 local 91 k
libsemanage i686 3.4-6.fc38 local 128 k
libsepol i686 3.4-4.fc38 local 336 k
libsigsegv i686 2.14-3.fc37 local 27 k
libsmartcols i686 2.38.1-3.fc38 local 65 k
libssh i686 0.10.4-2.fc38 local 222 k
libssh-config noarch 0.10.4-2.fc38 local 8.8 k
libstdc++ i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 857 k
libtasn1 i686 4.19.0-1.fc38 local 76 k
libtirpc i686 1.3.3-0.fc37 local 101 k
libunistring i686 1.0-2.fc37 local 551 k
libutempter i686 1.2.1-7.fc37 local 26 k
libuuid i686 2.38.1-3.fc38 local 28 k
libverto i686 0.3.2-4.fc37 local 21 k
libxcrypt i686 4.4.33-5.fc38 local 123 k
libxml2 i686 2.10.3-2.fc38 local 745 k
libzstd i686 1.5.2-3.fc37 local 274 k
lua-libs i686 5.4.4-6.fc38 local 148 k
lua-srpm-macros noarch 1-7.fc37 local 8.8 k
lz4-libs i686 1.9.3-5.fc37 local 72 k
mpfr i686 4.1.1-2.fc38 local 637 k
ncurses-base noarch 6.3-5.20221126.fc38 local 61 k
ncurses-libs i686 6.3-5.20221126.fc38 local 348 k
nettle i686 3.8-2.fc37 local 430 k
nim-srpm-macros noarch 3-7.fc37 local 8.4 k
ocaml-srpm-macros noarch 7-2.fc37 local 13 k
openblas-srpm-macros noarch 2-12.fc37 local 7.5 k
openldap i686 2.6.3-1.fc38 local 273 k
openssl-libs i686 1:3.0.5-6.fc38 local 2.1 M
p11-kit i686 0.24.1-5.fc38 local 335 k
p11-kit-trust i686 0.24.1-5.fc38 local 135 k
package-notes-srpm-macros noarch 0.5-6.fc38 local 11 k
pam i686 1.5.2-15.fc38 local 535 k
pam-libs i686 1.5.2-15.fc38 local 60 k
pcre2 i686 10.40-1.fc37.1 local 234 k
pcre2-syntax noarch 10.40-1.fc37.1 local 142 k
perl-srpm-macros noarch 1-47.fc38 local 8.2 k
pkgconf i686 1.8.0-3.fc37 local 42 k
pkgconf-m4 noarch 1.8.0-3.fc37 local 14 k
pkgconf-pkg-config i686 1.8.0-3.fc37 local 10 k
popt i686 1.19-1.fc38 local 61 k
publicsuffix-list-dafsa noarch 20221208-1.fc38 local 59 k
python-srpm-macros noarch 3.11-6.fc38 local 25 k
qt5-srpm-macros noarch 5.15.7-1.fc38 local 7.9 k
readline i686 8.2-2.fc38 local 218 k
rpm i686 4.18.0-8.fc38 local 543 k
rpm-build-libs i686 4.18.0-8.fc38 local 102 k
rpm-libs i686 4.18.0-8.fc38 local 341 k
rpm-sequoia i686 1.2.0-1.fc38 local 924 k
rpmautospec-rpm-macros noarch 0.3.1-1.fc38 local 8.8 k
rust-srpm-macros noarch 23-1.fc38 local 9.4 k
setup noarch 2.14.3-1.fc38 local 146 k
sqlite-libs i686 3.40.0-1.fc38 local 705 k
systemd-libs i686 252.4-598.fc38 local 662 k
tzdata noarch 2022g-1.fc38 local 432 k
util-linux-core i686 2.38.1-3.fc38 local 467 k
xxhash-libs i686 0.8.1-3.fc37 local 59 k
xz-libs i686 5.2.9-1.fc38 local 101 k
zip i686 3.0-35.fc38 local 263 k
zlib i686 1.2.13-1.fc38 local 92 k
zstd i686 1.5.2-3.fc37 local 418 k
Installing Groups:
build
Transaction Summary
=========================================================================================================================
Install 153 Packages
Total download size: 53 M
Installed size: 179 M
Downloading Packages:
(1/153): authselect-libs-1.4.2-1.fc38.i686.rpm 988 kB/s | 239 kB 00:00
(2/153): bash-5.2.9-3.fc38.i686.rpm 7.4 MB/s | 1.8 MB 00:00
(3/153): authselect-1.4.2-1.fc38.i686.rpm 573 kB/s | 141 kB 00:00
(4/153): libattr-2.5.1-5.fc38.i686.rpm 13 MB/s | 19 kB 00:00
(5/153): libacl-2.3.1-4.fc38.i686.rpm 12 MB/s | 25 kB 00:00
(6/153): libgcc-13.0.0-0.4.fc38.i686.rpm 356 kB/s | 101 kB 00:00
(7/153): alternatives-1.21-1.fc38.i686.rpm 1.2 MB/s | 38 kB 00:00
(8/153): ansible-srpm-macros-1-8.1.fc38.noarch. 3.0 MB/s | 8.6 kB 00:00
(9/153): audit-libs-3.0.9-2.fc38.i686.rpm 19 MB/s | 122 kB 00:00
(10/153): basesystem-11-14.fc37.noarch.rpm 2.7 MB/s | 7.0 kB 00:00
(11/153): libgomp-13.0.0-0.4.fc38.i686.rpm 900 kB/s | 304 kB 00:00
(12/153): libstdc++-13.0.0-0.4.fc38.i686.rpm 2.2 MB/s | 857 kB 00:00
(13/153): binutils-gold-2.39-6.fc38.i686.rpm 19 MB/s | 841 kB 00:00
(14/153): bzip2-libs-1.0.8-12.fc37.i686.rpm 11 MB/s | 41 kB 00:00
(15/153): bzip2-1.0.8-12.fc37.i686.rpm 2.1 MB/s | 53 kB 00:00
(16/153): ca-certificates-2022.2.54-5.fc37.noar 28 MB/s | 829 kB 00:00
(17/153): binutils-2.39-6.fc38.i686.rpm 52 MB/s | 5.6 MB 00:00
(18/153): coreutils-9.1-8.fc38.i686.rpm 28 MB/s | 1.1 MB 00:00
(19/153): cpio-2.13-13.fc38.i686.rpm 26 MB/s | 275 kB 00:00
(20/153): cracklib-2.9.7-30.fc38.i686.rpm 16 MB/s | 81 kB 00:00
(21/153): crypto-policies-20221215-1.gita4c31a3 13 MB/s | 63 kB 00:00
(22/153): curl-7.87.0-1.fc38.i686.rpm 42 MB/s | 347 kB 00:00
(23/153): coreutils-common-9.1-8.fc38.i686.rpm 50 MB/s | 2.0 MB 00:00
(24/153): debugedit-5.0-5.fc37.i686.rpm 20 MB/s | 78 kB 00:00
(25/153): cyrus-sasl-lib-2.1.28-8.fc38.i686.rpm 43 MB/s | 857 kB 00:00
(26/153): diffutils-3.8-3.fc37.i686.rpm 41 MB/s | 375 kB 00:00
(27/153): dwz-0.15-1.fc38.i686.rpm 17 MB/s | 144 kB 00:00
(28/153): ed-1.18-2.fc37.i686.rpm 21 MB/s | 78 kB 00:00
(29/153): efi-srpm-macros-5-6.fc37.noarch.rpm 6.0 MB/s | 22 kB 00:00
(30/153): elfutils-default-yama-scope-0.188-3.f 4.8 MB/s | 15 kB 00:00
(31/153): elfutils-debuginfod-client-0.188-3.fc 8.7 MB/s | 41 kB 00:00
(32/153): elfutils-0.188-3.fc38.i686.rpm 47 MB/s | 540 kB 00:00
(33/153): elfutils-libs-0.188-3.fc38.i686.rpm 44 MB/s | 286 kB 00:00
(34/153): elfutils-libelf-0.188-3.fc38.i686.rpm 25 MB/s | 203 kB 00:00
(35/153): fedora-gpg-keys-38-0.3.noarch.rpm 26 MB/s | 115 kB 00:00
(36/153): fedora-release-38-0.6.noarch.rpm 4.5 MB/s | 11 kB 00:00
(37/153): fedora-release-common-38-0.6.noarch.r 7.4 MB/s | 21 kB 00:00
(38/153): fedora-release-identity-basic-38-0.6. 4.5 MB/s | 11 kB 00:00
(39/153): fedora-repos-38-0.3.noarch.rpm 4.4 MB/s | 10 kB 00:00
(40/153): fedora-repos-rawhide-38-0.3.noarch.rp 4.1 MB/s | 9.7 kB 00:00
(41/153): file-5.42-4.fc37.i686.rpm 15 MB/s | 49 kB 00:00
(42/153): findutils-4.9.0-2.fc37.i686.rpm 47 MB/s | 492 kB 00:00
(43/153): filesystem-3.18-2.fc37.i686.rpm 66 MB/s | 1.1 MB 00:00
(44/153): file-libs-5.42-4.fc37.i686.rpm 34 MB/s | 684 kB 00:00
(45/153): fonts-srpm-macros-2.0.5-10.fc38.noarc 4.2 MB/s | 26 kB 00:00
(46/153): fpc-srpm-macros-1.3-6.fc37.noarch.rpm 2.8 MB/s | 7.7 kB 00:00
(47/153): gdbm-libs-1.23-2.fc37.i686.rpm 15 MB/s | 60 kB 00:00
(48/153): ghc-srpm-macros-1.5.0-7.fc37.noarch.r 2.4 MB/s | 7.8 kB 00:00
(49/153): gawk-5.1.1-4.fc37.i686.rpm 70 MB/s | 1.0 MB 00:00
(50/153): glibc-common-2.36.9000-19.fc38.i686.r 29 MB/s | 315 kB 00:00
(51/153): glibc-2.36.9000-19.fc38.i686.rpm 56 MB/s | 1.9 MB 00:00
(52/153): glibc-minimal-langpack-2.36.9000-19.f 6.6 MB/s | 30 kB 00:00
(53/153): glibc-gconv-extra-2.36.9000-19.fc38.i 59 MB/s | 1.6 MB 00:00
(54/153): gdb-minimal-12.1-10.fc38.i686.rpm 63 MB/s | 3.9 MB 00:00
(55/153): gmp-6.2.1-3.fc37.i686.rpm 25 MB/s | 305 kB 00:00
(56/153): gnat-srpm-macros-4-16.fc37.noarch.rpm 999 kB/s | 8.3 kB 00:00
(57/153): go-srpm-macros-3.2.0-1.fc38.noarch.rp 5.0 MB/s | 27 kB 00:00
(58/153): gzip-1.12-2.fc37.i686.rpm 32 MB/s | 157 kB 00:00
(59/153): grep-3.8-1.fc38.i686.rpm 39 MB/s | 289 kB 00:00
(60/153): jansson-2.13.1-5.fc37.i686.rpm 14 MB/s | 46 kB 00:00
(61/153): kernel-srpm-macros-1.0-15.fc37.noarch 3.5 MB/s | 9.4 kB 00:00
(62/153): info-7.0.1-1.fc38.i686.rpm 33 MB/s | 183 kB 00:00
(63/153): keyutils-libs-1.6.1-5.fc37.i686.rpm 12 MB/s | 32 kB 00:00
(64/153): libblkid-2.38.1-3.fc38.i686.rpm 20 MB/s | 116 kB 00:00
(65/153): libarchive-3.6.1-3.fc38.i686.rpm 43 MB/s | 443 kB 00:00
(66/153): libbrotli-1.0.9-9.fc37.i686.rpm 46 MB/s | 317 kB 00:00
(67/153): krb5-libs-1.20.1-3.fc38.i686.rpm 43 MB/s | 763 kB 00:00
(68/153): libcap-2.48-5.fc37.i686.rpm 9.8 MB/s | 68 kB 00:00
(69/153): libcap-ng-0.8.3-4.fc38.i686.rpm 10 MB/s | 33 kB 00:00
(70/153): libcom_err-1.46.5-3.fc37.i686.rpm 8.7 MB/s | 26 kB 00:00
(71/153): libcurl-7.87.0-1.fc38.i686.rpm 48 MB/s | 327 kB 00:00
(72/153): libeconf-0.4.0-4.fc37.i686.rpm 6.0 MB/s | 29 kB 00:00
(73/153): libevent-2.1.12-7.fc37.i686.rpm 44 MB/s | 279 kB 00:00
(74/153): libfdisk-2.38.1-3.fc38.i686.rpm 26 MB/s | 173 kB 00:00
(75/153): libdb-5.3.28-54.fc38.i686.rpm 52 MB/s | 827 kB 00:00
(76/153): libffi-3.4.4-1.fc38.i686.rpm 8.9 MB/s | 36 kB 00:00
(77/153): libnghttp2-1.51.0-1.fc38.i686.rpm 20 MB/s | 80 kB 00:00
(78/153): libmount-2.38.1-3.fc38.i686.rpm 24 MB/s | 141 kB 00:00
(79/153): libidn2-2.3.4-1.fc38.i686.rpm 17 MB/s | 154 kB 00:00
(80/153): libpkgconf-1.8.0-3.fc37.i686.rpm 13 MB/s | 38 kB 00:00
(81/153): libnsl2-2.0.0-4.fc37.i686.rpm 6.7 MB/s | 31 kB 00:00
(82/153): libpsl-0.21.1-6.fc37.i686.rpm 16 MB/s | 64 kB 00:00
(83/153): libpwquality-1.4.4-11.fc37.i686.rpm 19 MB/s | 106 kB 00:00
(84/153): libselinux-3.4-6.fc38.i686.rpm 18 MB/s | 91 kB 00:00
(85/153): libsemanage-3.4-6.fc38.i686.rpm 26 MB/s | 128 kB 00:00
(86/153): libsigsegv-2.14-3.fc37.i686.rpm 9.8 MB/s | 27 kB 00:00
(87/153): libsmartcols-2.38.1-3.fc38.i686.rpm 14 MB/s | 65 kB 00:00
(88/153): libsepol-3.4-4.fc38.i686.rpm 36 MB/s | 336 kB 00:00
(89/153): libssh-0.10.4-2.fc38.i686.rpm 36 MB/s | 222 kB 00:00
(90/153): libssh-config-0.10.4-2.fc38.noarch.rp 2.1 MB/s | 8.8 kB 00:00
(91/153): libtasn1-4.19.0-1.fc38.i686.rpm 17 MB/s | 76 kB 00:00
(92/153): libtirpc-1.3.3-0.fc37.i686.rpm 19 MB/s | 101 kB 00:00
(93/153): libutempter-1.2.1-7.fc37.i686.rpm 7.3 MB/s | 26 kB 00:00
(94/153): libuuid-2.38.1-3.fc38.i686.rpm 8.1 MB/s | 28 kB 00:00
(95/153): libunistring-1.0-2.fc37.i686.rpm 53 MB/s | 551 kB 00:00
(96/153): libverto-0.3.2-4.fc37.i686.rpm 8.4 MB/s | 21 kB 00:00
(97/153): libxcrypt-4.4.33-5.fc38.i686.rpm 28 MB/s | 123 kB 00:00
(98/153): lua-libs-5.4.4-6.fc38.i686.rpm 24 MB/s | 148 kB 00:00
(99/153): libxml2-2.10.3-2.fc38.i686.rpm 50 MB/s | 745 kB 00:00
(100/153): lua-srpm-macros-1-7.fc37.noarch.rpm 1.7 MB/s | 8.8 kB 00:00
(101/153): libzstd-1.5.2-3.fc37.i686.rpm 16 MB/s | 274 kB 00:00
(102/153): lz4-libs-1.9.3-5.fc37.i686.rpm 17 MB/s | 72 kB 00:00
(103/153): ncurses-base-6.3-5.20221126.fc38.noa 15 MB/s | 61 kB 00:00
(104/153): mpfr-4.1.1-2.fc38.i686.rpm 49 MB/s | 637 kB 00:00
(105/153): ncurses-libs-6.3-5.20221126.fc38.i68 33 MB/s | 348 kB 00:00
(106/153): nim-srpm-macros-3-7.fc37.noarch.rpm 2.7 MB/s | 8.4 kB 00:00
(107/153): nettle-3.8-2.fc37.i686.rpm 45 MB/s | 430 kB 00:00
(108/153): ocaml-srpm-macros-7-2.fc37.noarch.rp 4.3 MB/s | 13 kB 00:00
(109/153): openblas-srpm-macros-2-12.fc37.noarc 2.9 MB/s | 7.5 kB 00:00
(110/153): openldap-2.6.3-1.fc38.i686.rpm 39 MB/s | 273 kB 00:00
(111/153): p11-kit-0.24.1-5.fc38.i686.rpm 37 MB/s | 335 kB 00:00
(112/153): package-notes-srpm-macros-0.5-6.fc38 3.5 MB/s | 11 kB 00:00
(113/153): p11-kit-trust-0.24.1-5.fc38.i686.rpm 16 MB/s | 135 kB 00:00
(114/153): openssl-libs-3.0.5-6.fc38.i686.rpm 74 MB/s | 2.1 MB 00:00
(115/153): pam-libs-1.5.2-15.fc38.i686.rpm 5.8 MB/s | 60 kB 00:00
(116/153): pam-1.5.2-15.fc38.i686.rpm 37 MB/s | 535 kB 00:00
(117/153): patch-2.7.6-17.fc37.i686.rpm 29 MB/s | 137 kB 00:00
(118/153): pcre2-10.40-1.fc37.1.i686.rpm 40 MB/s | 234 kB 00:00
(119/153): perl-srpm-macros-1-47.fc38.noarch.rp 2.8 MB/s | 8.2 kB 00:00
(120/153): pkgconf-1.8.0-3.fc37.i686.rpm 13 MB/s | 42 kB 00:00
(121/153): pcre2-syntax-10.40-1.fc37.1.noarch.r 22 MB/s | 142 kB 00:00
(122/153): pkgconf-m4-1.8.0-3.fc37.noarch.rpm 5.6 MB/s | 14 kB 00:00
(123/153): pkgconf-pkg-config-1.8.0-3.fc37.i686 3.6 MB/s | 10 kB 00:00
(124/153): popt-1.19-1.fc38.i686.rpm 17 MB/s | 61 kB 00:00
(125/153): publicsuffix-list-dafsa-20221208-1.f 16 MB/s | 59 kB 00:00
(126/153): python-srpm-macros-3.11-6.fc38.noarc 8.7 MB/s | 25 kB 00:00
(127/153): qt5-srpm-macros-5.15.7-1.fc38.noarch 2.9 MB/s | 7.9 kB 00:00
(128/153): redhat-rpm-config-235-1.fc38.noarch. 21 MB/s | 74 kB 00:00
(129/153): readline-8.2-2.fc38.i686.rpm 35 MB/s | 218 kB 00:00
(130/153): rpm-build-4.18.0-8.fc38.i686.rpm 20 MB/s | 69 kB 00:00
(131/153): rpm-build-libs-4.18.0-8.fc38.i686.rp 24 MB/s | 102 kB 00:00
(132/153): rpm-4.18.0-8.fc38.i686.rpm 53 MB/s | 543 kB 00:00
(133/153): rpm-libs-4.18.0-8.fc38.i686.rpm 45 MB/s | 341 kB 00:00
(134/153): rpmautospec-rpm-macros-0.3.1-1.fc38. 2.1 MB/s | 8.8 kB 00:00
(135/153): rust-srpm-macros-23-1.fc38.noarch.rp 2.6 MB/s | 9.4 kB 00:00
(136/153): setup-2.14.3-1.fc38.noarch.rpm 26 MB/s | 146 kB 00:00
(137/153): rpm-sequoia-1.2.0-1.fc38.i686.rpm 54 MB/s | 924 kB 00:00
(138/153): sed-4.8-11.fc37.i686.rpm 26 MB/s | 300 kB 00:00
(139/153): sqlite-libs-3.40.0-1.fc38.i686.rpm 59 MB/s | 705 kB 00:00
(140/153): systemd-libs-252.4-598.fc38.i686.rpm 50 MB/s | 662 kB 00:00
(141/153): tzdata-2022g-1.fc38.noarch.rpm 37 MB/s | 432 kB 00:00
(142/153): tar-1.34-5.fc38.i686.rpm 51 MB/s | 892 kB 00:00
(143/153): shadow-utils-4.13-3.fc38.i686.rpm 36 MB/s | 1.2 MB 00:00
(144/153): unzip-6.0-58.fc38.i686.rpm 34 MB/s | 177 kB 00:00
(145/153): which-2.21-36.fc38.i686.rpm 11 MB/s | 42 kB 00:00
(146/153): util-linux-core-2.38.1-3.fc38.i686.r 52 MB/s | 467 kB 00:00
(147/153): xxhash-libs-0.8.1-3.fc37.i686.rpm 13 MB/s | 59 kB 00:00
(148/153): xz-5.2.9-1.fc38.i686.rpm 41 MB/s | 300 kB 00:00
(149/153): xz-libs-5.2.9-1.fc38.i686.rpm 14 MB/s | 101 kB 00:00
(150/153): zlib-1.2.13-1.fc38.i686.rpm 21 MB/s | 92 kB 00:00
(151/153): util-linux-2.38.1-3.fc38.i686.rpm 70 MB/s | 2.3 MB 00:00
(152/153): zip-3.0-35.fc38.i686.rpm 26 MB/s | 263 kB 00:00
(153/153): zstd-1.5.2-3.fc37.i686.rpm 32 MB/s | 418 kB 00:00
--------------------------------------------------------------------------------
Total 48 MB/s | 53 MB 00:01
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Running scriptlet: filesystem-3.18-2.fc37.i686 1/1
Preparing : 1/1
Installing : libgcc-13.0.0-0.4.fc38.i686 1/153
Running scriptlet: libgcc-13.0.0-0.4.fc38.i686 1/153
Installing : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/153
Running scriptlet: crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/153
Installing : fedora-release-identity-basic-38-0.6.noarch 3/153
Installing : tzdata-2022g-1.fc38.noarch 4/153
Installing : rust-srpm-macros-23-1.fc38.noarch 5/153
Installing : qt5-srpm-macros-5.15.7-1.fc38.noarch 6/153
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Installing : openblas-srpm-macros-2-12.fc37.noarch 12/153
Installing : ocaml-srpm-macros-7-2.fc37.noarch 13/153
Installing : nim-srpm-macros-3-7.fc37.noarch 14/153
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Installing : libssh-config-0.10.4-2.fc38.noarch 16/153
Installing : kernel-srpm-macros-1.0-15.fc37.noarch 17/153
Installing : gnat-srpm-macros-4-16.fc37.noarch 18/153
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Installing : fpc-srpm-macros-1.3-6.fc37.noarch 20/153
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Installing : setup-2.14.3-1.fc38.noarch 26/153
warning: /etc/hosts created as /etc/hosts.rpmnew
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Installing : filesystem-3.18-2.fc37.i686 27/153
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Installing : ansible-srpm-macros-1-8.1.fc38.noarch 30/153
Installing : glibc-gconv-extra-2.36.9000-19.fc38.i686 31/153
Running scriptlet: glibc-gconv-extra-2.36.9000-19.fc38.i686 31/153
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Running scriptlet: glibc-2.36.9000-19.fc38.i686 33/153
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Running scriptlet: glibc-2.36.9000-19.fc38.i686 33/153
Installing : bash-5.2.9-3.fc38.i686 34/153
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Installing : glibc-common-2.36.9000-19.fc38.i686 35/153
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Installing : xz-libs-5.2.9-1.fc38.i686 38/153
Installing : bzip2-libs-1.0.8-12.fc37.i686 39/153
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Installing : gmp-1:6.2.1-3.fc37.i686 41/153
Installing : libstdc++-13.0.0-0.4.fc38.i686 42/153
Installing : libuuid-2.38.1-3.fc38.i686 43/153
Installing : libzstd-1.5.2-3.fc37.i686 44/153
Installing : popt-1.19-1.fc38.i686 45/153
Installing : libblkid-2.38.1-3.fc38.i686 46/153
Installing : libattr-2.5.1-5.fc38.i686 47/153
Installing : libacl-2.3.1-4.fc38.i686 48/153
Installing : libcap-2.48-5.fc37.i686 49/153
Installing : libxcrypt-4.4.33-5.fc38.i686 50/153
Installing : readline-8.2-2.fc38.i686 51/153
Installing : lz4-libs-1.9.3-5.fc37.i686 52/153
Installing : systemd-libs-252.4-598.fc38.i686 53/153
Installing : mpfr-4.1.1-2.fc38.i686 54/153
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Installing : unzip-6.0-58.fc38.i686 56/153
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Installing : libcom_err-1.46.5-3.fc37.i686 63/153
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Installing : lua-libs-5.4.4-6.fc38.i686 70/153
Installing : pcre2-10.40-1.fc37.1.i686 71/153
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Installing : libselinux-3.4-6.fc38.i686 73/153
Installing : sed-4.8-11.fc37.i686 74/153
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Installing : util-linux-core-2.38.1-3.fc38.i686 79/153
Installing : libsemanage-3.4-6.fc38.i686 80/153
Installing : shadow-utils-2:4.13-3.fc38.i686 81/153
Running scriptlet: libutempter-1.2.1-7.fc37.i686 82/153
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Installing : tar-2:1.34-5.fc38.i686 83/153
Installing : libpsl-0.21.1-6.fc37.i686 84/153
Installing : zip-3.0-35.fc38.i686 85/153
Installing : zstd-1.5.2-3.fc37.i686 86/153
Installing : libfdisk-2.38.1-3.fc38.i686 87/153
Installing : nettle-3.8-2.fc37.i686 88/153
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Installing : ed-1.18-2.fc37.i686 93/153
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Installing : libgomp-13.0.0-0.4.fc38.i686 95/153
Installing : cpio-2.13-13.fc38.i686 96/153
Installing : diffutils-3.8-3.fc37.i686 97/153
Installing : gdbm-libs-1:1.23-2.fc37.i686 98/153
Installing : cyrus-sasl-lib-2.1.28-8.fc38.i686 99/153
Installing : jansson-2.13.1-5.fc37.i686 100/153
Installing : keyutils-libs-1.6.1-5.fc37.i686 101/153
Installing : libbrotli-1.0.9-9.fc37.i686 102/153
Installing : libdb-5.3.28-54.fc38.i686 103/153
Installing : libffi-3.4.4-1.fc38.i686 104/153
Installing : p11-kit-0.24.1-5.fc38.i686 105/153
Installing : libnghttp2-1.51.0-1.fc38.i686 106/153
Installing : libpkgconf-1.8.0-3.fc37.i686 107/153
Installing : pkgconf-1.8.0-3.fc37.i686 108/153
Installing : pkgconf-pkg-config-1.8.0-3.fc37.i686 109/153
Installing : libsigsegv-2.14-3.fc37.i686 110/153
Installing : gawk-5.1.1-4.fc37.i686 111/153
Installing : libtasn1-4.19.0-1.fc38.i686 112/153
Installing : p11-kit-trust-0.24.1-5.fc38.i686 113/153
Running scriptlet: p11-kit-trust-0.24.1-5.fc38.i686 113/153
Installing : openssl-libs-1:3.0.5-6.fc38.i686 114/153
Installing : coreutils-9.1-8.fc38.i686 115/153
Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 116/153
Installing : ca-certificates-2022.2.54-5.fc37.noarch 116/153
Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 116/153
Running scriptlet: authselect-libs-1.4.2-1.fc38.i686 117/153
Installing : authselect-libs-1.4.2-1.fc38.i686 117/153
Installing : gzip-1.12-2.fc37.i686 118/153
Installing : cracklib-2.9.7-30.fc38.i686 119/153
Installing : libpwquality-1.4.4-11.fc37.i686 120/153
Installing : authselect-1.4.2-1.fc38.i686 121/153
Installing : libarchive-3.6.1-3.fc38.i686 122/153
Installing : libevent-2.1.12-7.fc37.i686 123/153
Installing : openldap-2.6.3-1.fc38.i686 124/153
Installing : libverto-0.3.2-4.fc37.i686 125/153
Installing : krb5-libs-1.20.1-3.fc38.i686 126/153
Installing : libtirpc-1.3.3-0.fc37.i686 127/153
Installing : libnsl2-2.0.0-4.fc37.i686 128/153
Installing : pam-1.5.2-15.fc38.i686 129/153
Installing : libssh-0.10.4-2.fc38.i686 130/153
Installing : libcurl-7.87.0-1.fc38.i686 131/153
Installing : elfutils-libs-0.188-3.fc38.i686 132/153
Installing : elfutils-debuginfod-client-0.188-3.fc38.i686 133/153
Installing : binutils-gold-2.39-6.fc38.i686 134/153
Installing : binutils-2.39-6.fc38.i686 135/153
Running scriptlet: binutils-2.39-6.fc38.i686 135/153
Installing : elfutils-0.188-3.fc38.i686 136/153
Installing : rpm-build-libs-4.18.0-8.fc38.i686 137/153
Installing : curl-7.87.0-1.fc38.i686 138/153
Running scriptlet: rpm-4.18.0-8.fc38.i686 139/153
Installing : rpm-4.18.0-8.fc38.i686 139/153
Installing : efi-srpm-macros-5-6.fc37.noarch 140/153
Installing : lua-srpm-macros-1-7.fc37.noarch 141/153
Installing : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch 142/153
Installing : fonts-srpm-macros-1:2.0.5-10.fc38.noarch 143/153
Installing : go-srpm-macros-3.2.0-1.fc38.noarch 144/153
Installing : python-srpm-macros-3.11-6.fc38.noarch 145/153
Installing : redhat-rpm-config-235-1.fc38.noarch 146/153
Installing : xxhash-libs-0.8.1-3.fc37.i686 147/153
Installing : gdb-minimal-12.1-10.fc38.i686 148/153
Installing : debugedit-5.0-5.fc37.i686 149/153
Installing : rpm-build-4.18.0-8.fc38.i686 150/153
Installing : util-linux-2.38.1-3.fc38.i686 151/153
Installing : which-2.21-36.fc38.i686 152/153
Installing : info-7.0.1-1.fc38.i686 153/153
Running scriptlet: filesystem-3.18-2.fc37.i686 153/153
Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 153/153
Running scriptlet: authselect-libs-1.4.2-1.fc38.i686 153/153
Running scriptlet: rpm-4.18.0-8.fc38.i686 153/153
Running scriptlet: info-7.0.1-1.fc38.i686 153/153
Verifying : authselect-1.4.2-1.fc38.i686 1/153
Verifying : authselect-libs-1.4.2-1.fc38.i686 2/153
Verifying : bash-5.2.9-3.fc38.i686 3/153
Verifying : libacl-2.3.1-4.fc38.i686 4/153
Verifying : libattr-2.5.1-5.fc38.i686 5/153
Verifying : libgcc-13.0.0-0.4.fc38.i686 6/153
Verifying : libgomp-13.0.0-0.4.fc38.i686 7/153
Verifying : libstdc++-13.0.0-0.4.fc38.i686 8/153
Verifying : alternatives-1.21-1.fc38.i686 9/153
Verifying : ansible-srpm-macros-1-8.1.fc38.noarch 10/153
Verifying : audit-libs-3.0.9-2.fc38.i686 11/153
Verifying : basesystem-11-14.fc37.noarch 12/153
Verifying : binutils-2.39-6.fc38.i686 13/153
Verifying : binutils-gold-2.39-6.fc38.i686 14/153
Verifying : bzip2-1.0.8-12.fc37.i686 15/153
Verifying : bzip2-libs-1.0.8-12.fc37.i686 16/153
Verifying : ca-certificates-2022.2.54-5.fc37.noarch 17/153
Verifying : coreutils-9.1-8.fc38.i686 18/153
Verifying : coreutils-common-9.1-8.fc38.i686 19/153
Verifying : cpio-2.13-13.fc38.i686 20/153
Verifying : cracklib-2.9.7-30.fc38.i686 21/153
Verifying : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 22/153
Verifying : curl-7.87.0-1.fc38.i686 23/153
Verifying : cyrus-sasl-lib-2.1.28-8.fc38.i686 24/153
Verifying : debugedit-5.0-5.fc37.i686 25/153
Verifying : diffutils-3.8-3.fc37.i686 26/153
Verifying : dwz-0.15-1.fc38.i686 27/153
Verifying : ed-1.18-2.fc37.i686 28/153
Verifying : efi-srpm-macros-5-6.fc37.noarch 29/153
Verifying : elfutils-0.188-3.fc38.i686 30/153
Verifying : elfutils-debuginfod-client-0.188-3.fc38.i686 31/153
Verifying : elfutils-default-yama-scope-0.188-3.fc38.noarch 32/153
Verifying : elfutils-libelf-0.188-3.fc38.i686 33/153
Verifying : elfutils-libs-0.188-3.fc38.i686 34/153
Verifying : fedora-gpg-keys-38-0.3.noarch 35/153
Verifying : fedora-release-38-0.6.noarch 36/153
Verifying : fedora-release-common-38-0.6.noarch 37/153
Verifying : fedora-release-identity-basic-38-0.6.noarch 38/153
Verifying : fedora-repos-38-0.3.noarch 39/153
Verifying : fedora-repos-rawhide-38-0.3.noarch 40/153
Verifying : file-5.42-4.fc37.i686 41/153
Verifying : file-libs-5.42-4.fc37.i686 42/153
Verifying : filesystem-3.18-2.fc37.i686 43/153
Verifying : findutils-1:4.9.0-2.fc37.i686 44/153
Verifying : fonts-srpm-macros-1:2.0.5-10.fc38.noarch 45/153
Verifying : fpc-srpm-macros-1.3-6.fc37.noarch 46/153
Verifying : gawk-5.1.1-4.fc37.i686 47/153
Verifying : gdb-minimal-12.1-10.fc38.i686 48/153
Verifying : gdbm-libs-1:1.23-2.fc37.i686 49/153
Verifying : ghc-srpm-macros-1.5.0-7.fc37.noarch 50/153
Verifying : glibc-2.36.9000-19.fc38.i686 51/153
Verifying : glibc-common-2.36.9000-19.fc38.i686 52/153
Verifying : glibc-gconv-extra-2.36.9000-19.fc38.i686 53/153
Verifying : glibc-minimal-langpack-2.36.9000-19.fc38.i686 54/153
Verifying : gmp-1:6.2.1-3.fc37.i686 55/153
Verifying : gnat-srpm-macros-4-16.fc37.noarch 56/153
Verifying : go-srpm-macros-3.2.0-1.fc38.noarch 57/153
Verifying : grep-3.8-1.fc38.i686 58/153
Verifying : gzip-1.12-2.fc37.i686 59/153
Verifying : info-7.0.1-1.fc38.i686 60/153
Verifying : jansson-2.13.1-5.fc37.i686 61/153
Verifying : kernel-srpm-macros-1.0-15.fc37.noarch 62/153
Verifying : keyutils-libs-1.6.1-5.fc37.i686 63/153
Verifying : krb5-libs-1.20.1-3.fc38.i686 64/153
Verifying : libarchive-3.6.1-3.fc38.i686 65/153
Verifying : libblkid-2.38.1-3.fc38.i686 66/153
Verifying : libbrotli-1.0.9-9.fc37.i686 67/153
Verifying : libcap-2.48-5.fc37.i686 68/153
Verifying : libcap-ng-0.8.3-4.fc38.i686 69/153
Verifying : libcom_err-1.46.5-3.fc37.i686 70/153
Verifying : libcurl-7.87.0-1.fc38.i686 71/153
Verifying : libdb-5.3.28-54.fc38.i686 72/153
Verifying : libeconf-0.4.0-4.fc37.i686 73/153
Verifying : libevent-2.1.12-7.fc37.i686 74/153
Verifying : libfdisk-2.38.1-3.fc38.i686 75/153
Verifying : libffi-3.4.4-1.fc38.i686 76/153
Verifying : libidn2-2.3.4-1.fc38.i686 77/153
Verifying : libmount-2.38.1-3.fc38.i686 78/153
Verifying : libnghttp2-1.51.0-1.fc38.i686 79/153
Verifying : libnsl2-2.0.0-4.fc37.i686 80/153
Verifying : libpkgconf-1.8.0-3.fc37.i686 81/153
Verifying : libpsl-0.21.1-6.fc37.i686 82/153
Verifying : libpwquality-1.4.4-11.fc37.i686 83/153
Verifying : libselinux-3.4-6.fc38.i686 84/153
Verifying : libsemanage-3.4-6.fc38.i686 85/153
Verifying : libsepol-3.4-4.fc38.i686 86/153
Verifying : libsigsegv-2.14-3.fc37.i686 87/153
Verifying : libsmartcols-2.38.1-3.fc38.i686 88/153
Verifying : libssh-0.10.4-2.fc38.i686 89/153
Verifying : libssh-config-0.10.4-2.fc38.noarch 90/153
Verifying : libtasn1-4.19.0-1.fc38.i686 91/153
Verifying : libtirpc-1.3.3-0.fc37.i686 92/153
Verifying : libunistring-1.0-2.fc37.i686 93/153
Verifying : libutempter-1.2.1-7.fc37.i686 94/153
Verifying : libuuid-2.38.1-3.fc38.i686 95/153
Verifying : libverto-0.3.2-4.fc37.i686 96/153
Verifying : libxcrypt-4.4.33-5.fc38.i686 97/153
Verifying : libxml2-2.10.3-2.fc38.i686 98/153
Verifying : libzstd-1.5.2-3.fc37.i686 99/153
Verifying : lua-libs-5.4.4-6.fc38.i686 100/153
Verifying : lua-srpm-macros-1-7.fc37.noarch 101/153
Verifying : lz4-libs-1.9.3-5.fc37.i686 102/153
Verifying : mpfr-4.1.1-2.fc38.i686 103/153
Verifying : ncurses-base-6.3-5.20221126.fc38.noarch 104/153
Verifying : ncurses-libs-6.3-5.20221126.fc38.i686 105/153
Verifying : nettle-3.8-2.fc37.i686 106/153
Verifying : nim-srpm-macros-3-7.fc37.noarch 107/153
Verifying : ocaml-srpm-macros-7-2.fc37.noarch 108/153
Verifying : openblas-srpm-macros-2-12.fc37.noarch 109/153
Verifying : openldap-2.6.3-1.fc38.i686 110/153
Verifying : openssl-libs-1:3.0.5-6.fc38.i686 111/153
Verifying : p11-kit-0.24.1-5.fc38.i686 112/153
Verifying : p11-kit-trust-0.24.1-5.fc38.i686 113/153
Verifying : package-notes-srpm-macros-0.5-6.fc38.noarch 114/153
Verifying : pam-1.5.2-15.fc38.i686 115/153
Verifying : pam-libs-1.5.2-15.fc38.i686 116/153
Verifying : patch-2.7.6-17.fc37.i686 117/153
Verifying : pcre2-10.40-1.fc37.1.i686 118/153
Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 119/153
Verifying : perl-srpm-macros-1-47.fc38.noarch 120/153
Verifying : pkgconf-1.8.0-3.fc37.i686 121/153
Verifying : pkgconf-m4-1.8.0-3.fc37.noarch 122/153
Verifying : pkgconf-pkg-config-1.8.0-3.fc37.i686 123/153
Verifying : popt-1.19-1.fc38.i686 124/153
Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 125/153
Verifying : python-srpm-macros-3.11-6.fc38.noarch 126/153
Verifying : qt5-srpm-macros-5.15.7-1.fc38.noarch 127/153
Verifying : readline-8.2-2.fc38.i686 128/153
Verifying : redhat-rpm-config-235-1.fc38.noarch 129/153
Verifying : rpm-4.18.0-8.fc38.i686 130/153
Verifying : rpm-build-4.18.0-8.fc38.i686 131/153
Verifying : rpm-build-libs-4.18.0-8.fc38.i686 132/153
Verifying : rpm-libs-4.18.0-8.fc38.i686 133/153
Verifying : rpm-sequoia-1.2.0-1.fc38.i686 134/153
Verifying : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch 135/153
Verifying : rust-srpm-macros-23-1.fc38.noarch 136/153
Verifying : sed-4.8-11.fc37.i686 137/153
Verifying : setup-2.14.3-1.fc38.noarch 138/153
Verifying : shadow-utils-2:4.13-3.fc38.i686 139/153
Verifying : sqlite-libs-3.40.0-1.fc38.i686 140/153
Verifying : systemd-libs-252.4-598.fc38.i686 141/153
Verifying : tar-2:1.34-5.fc38.i686 142/153
Verifying : tzdata-2022g-1.fc38.noarch 143/153
Verifying : unzip-6.0-58.fc38.i686 144/153
Verifying : util-linux-2.38.1-3.fc38.i686 145/153
Verifying : util-linux-core-2.38.1-3.fc38.i686 146/153
Verifying : which-2.21-36.fc38.i686 147/153
Verifying : xxhash-libs-0.8.1-3.fc37.i686 148/153
Verifying : xz-5.2.9-1.fc38.i686 149/153
Verifying : xz-libs-5.2.9-1.fc38.i686 150/153
Verifying : zip-3.0-35.fc38.i686 151/153
Verifying : zlib-1.2.13-1.fc38.i686 152/153
Verifying : zstd-1.5.2-3.fc37.i686 153/153
Installed:
alternatives-1.21-1.fc38.i686
ansible-srpm-macros-1-8.1.fc38.noarch
audit-libs-3.0.9-2.fc38.i686
authselect-1.4.2-1.fc38.i686
authselect-libs-1.4.2-1.fc38.i686
basesystem-11-14.fc37.noarch
bash-5.2.9-3.fc38.i686
binutils-2.39-6.fc38.i686
binutils-gold-2.39-6.fc38.i686
bzip2-1.0.8-12.fc37.i686
bzip2-libs-1.0.8-12.fc37.i686
ca-certificates-2022.2.54-5.fc37.noarch
coreutils-9.1-8.fc38.i686
coreutils-common-9.1-8.fc38.i686
cpio-2.13-13.fc38.i686
cracklib-2.9.7-30.fc38.i686
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
curl-7.87.0-1.fc38.i686
cyrus-sasl-lib-2.1.28-8.fc38.i686
debugedit-5.0-5.fc37.i686
diffutils-3.8-3.fc37.i686
dwz-0.15-1.fc38.i686
ed-1.18-2.fc37.i686
efi-srpm-macros-5-6.fc37.noarch
elfutils-0.188-3.fc38.i686
elfutils-debuginfod-client-0.188-3.fc38.i686
elfutils-default-yama-scope-0.188-3.fc38.noarch
elfutils-libelf-0.188-3.fc38.i686
elfutils-libs-0.188-3.fc38.i686
fedora-gpg-keys-38-0.3.noarch
fedora-release-38-0.6.noarch
fedora-release-common-38-0.6.noarch
fedora-release-identity-basic-38-0.6.noarch
fedora-repos-38-0.3.noarch
fedora-repos-rawhide-38-0.3.noarch
file-5.42-4.fc37.i686
file-libs-5.42-4.fc37.i686
filesystem-3.18-2.fc37.i686
findutils-1:4.9.0-2.fc37.i686
fonts-srpm-macros-1:2.0.5-10.fc38.noarch
fpc-srpm-macros-1.3-6.fc37.noarch
gawk-5.1.1-4.fc37.i686
gdb-minimal-12.1-10.fc38.i686
gdbm-libs-1:1.23-2.fc37.i686
ghc-srpm-macros-1.5.0-7.fc37.noarch
glibc-2.36.9000-19.fc38.i686
glibc-common-2.36.9000-19.fc38.i686
glibc-gconv-extra-2.36.9000-19.fc38.i686
glibc-minimal-langpack-2.36.9000-19.fc38.i686
gmp-1:6.2.1-3.fc37.i686
gnat-srpm-macros-4-16.fc37.noarch
go-srpm-macros-3.2.0-1.fc38.noarch
grep-3.8-1.fc38.i686
gzip-1.12-2.fc37.i686
info-7.0.1-1.fc38.i686
jansson-2.13.1-5.fc37.i686
kernel-srpm-macros-1.0-15.fc37.noarch
keyutils-libs-1.6.1-5.fc37.i686
krb5-libs-1.20.1-3.fc38.i686
libacl-2.3.1-4.fc38.i686
libarchive-3.6.1-3.fc38.i686
libattr-2.5.1-5.fc38.i686
libblkid-2.38.1-3.fc38.i686
libbrotli-1.0.9-9.fc37.i686
libcap-2.48-5.fc37.i686
libcap-ng-0.8.3-4.fc38.i686
libcom_err-1.46.5-3.fc37.i686
libcurl-7.87.0-1.fc38.i686
libdb-5.3.28-54.fc38.i686
libeconf-0.4.0-4.fc37.i686
libevent-2.1.12-7.fc37.i686
libfdisk-2.38.1-3.fc38.i686
libffi-3.4.4-1.fc38.i686
libgcc-13.0.0-0.4.fc38.i686
libgomp-13.0.0-0.4.fc38.i686
libidn2-2.3.4-1.fc38.i686
libmount-2.38.1-3.fc38.i686
libnghttp2-1.51.0-1.fc38.i686
libnsl2-2.0.0-4.fc37.i686
libpkgconf-1.8.0-3.fc37.i686
libpsl-0.21.1-6.fc37.i686
libpwquality-1.4.4-11.fc37.i686
libselinux-3.4-6.fc38.i686
libsemanage-3.4-6.fc38.i686
libsepol-3.4-4.fc38.i686
libsigsegv-2.14-3.fc37.i686
libsmartcols-2.38.1-3.fc38.i686
libssh-0.10.4-2.fc38.i686
libssh-config-0.10.4-2.fc38.noarch
libstdc++-13.0.0-0.4.fc38.i686
libtasn1-4.19.0-1.fc38.i686
libtirpc-1.3.3-0.fc37.i686
libunistring-1.0-2.fc37.i686
libutempter-1.2.1-7.fc37.i686
libuuid-2.38.1-3.fc38.i686
libverto-0.3.2-4.fc37.i686
libxcrypt-4.4.33-5.fc38.i686
libxml2-2.10.3-2.fc38.i686
libzstd-1.5.2-3.fc37.i686
lua-libs-5.4.4-6.fc38.i686
lua-srpm-macros-1-7.fc37.noarch
lz4-libs-1.9.3-5.fc37.i686
mpfr-4.1.1-2.fc38.i686
ncurses-base-6.3-5.20221126.fc38.noarch
ncurses-libs-6.3-5.20221126.fc38.i686
nettle-3.8-2.fc37.i686
nim-srpm-macros-3-7.fc37.noarch
ocaml-srpm-macros-7-2.fc37.noarch
openblas-srpm-macros-2-12.fc37.noarch
openldap-2.6.3-1.fc38.i686
openssl-libs-1:3.0.5-6.fc38.i686
p11-kit-0.24.1-5.fc38.i686
p11-kit-trust-0.24.1-5.fc38.i686
package-notes-srpm-macros-0.5-6.fc38.noarch
pam-1.5.2-15.fc38.i686
pam-libs-1.5.2-15.fc38.i686
patch-2.7.6-17.fc37.i686
pcre2-10.40-1.fc37.1.i686
pcre2-syntax-10.40-1.fc37.1.noarch
perl-srpm-macros-1-47.fc38.noarch
pkgconf-1.8.0-3.fc37.i686
pkgconf-m4-1.8.0-3.fc37.noarch
pkgconf-pkg-config-1.8.0-3.fc37.i686
popt-1.19-1.fc38.i686
publicsuffix-list-dafsa-20221208-1.fc38.noarch
python-srpm-macros-3.11-6.fc38.noarch
qt5-srpm-macros-5.15.7-1.fc38.noarch
readline-8.2-2.fc38.i686
redhat-rpm-config-235-1.fc38.noarch
rpm-4.18.0-8.fc38.i686
rpm-build-4.18.0-8.fc38.i686
rpm-build-libs-4.18.0-8.fc38.i686
rpm-libs-4.18.0-8.fc38.i686
rpm-sequoia-1.2.0-1.fc38.i686
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
rust-srpm-macros-23-1.fc38.noarch
sed-4.8-11.fc37.i686
setup-2.14.3-1.fc38.noarch
shadow-utils-2:4.13-3.fc38.i686
sqlite-libs-3.40.0-1.fc38.i686
systemd-libs-252.4-598.fc38.i686
tar-2:1.34-5.fc38.i686
tzdata-2022g-1.fc38.noarch
unzip-6.0-58.fc38.i686
util-linux-2.38.1-3.fc38.i686
util-linux-core-2.38.1-3.fc38.i686
which-2.21-36.fc38.i686
xxhash-libs-0.8.1-3.fc37.i686
xz-5.2.9-1.fc38.i686
xz-libs-5.2.9-1.fc38.i686
zip-3.0-35.fc38.i686
zlib-1.2.13-1.fc38.i686
zstd-1.5.2-3.fc37.i686
Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: elfutils-libelf-0.188-3.fc38.i686
pcre2-10.40-1.fc37.1.i686
keyutils-libs-1.6.1-5.fc37.i686
libnghttp2-1.51.0-1.fc38.i686
sqlite-libs-3.40.0-1.fc38.i686
p11-kit-trust-0.24.1-5.fc38.i686
coreutils-common-9.1-8.fc38.i686
fedora-gpg-keys-38-0.3.noarch
libsemanage-3.4-6.fc38.i686
libpsl-0.21.1-6.fc37.i686
libssh-0.10.4-2.fc38.i686
libeconf-0.4.0-4.fc37.i686
tar-1.34-5.fc38.i686
fedora-release-38-0.6.noarch
setup-2.14.3-1.fc38.noarch
gdbm-libs-1.23-2.fc37.i686
p11-kit-0.24.1-5.fc38.i686
lua-libs-5.4.4-6.fc38.i686
systemd-libs-252.4-598.fc38.i686
libcom_err-1.46.5-3.fc37.i686
libgcc-13.0.0-0.4.fc38.i686
xz-libs-5.2.9-1.fc38.i686
libtirpc-1.3.3-0.fc37.i686
bzip2-libs-1.0.8-12.fc37.i686
libuuid-2.38.1-3.fc38.i686
qt5-srpm-macros-5.15.7-1.fc38.noarch
gmp-6.2.1-3.fc37.i686
glibc-common-2.36.9000-19.fc38.i686
lua-srpm-macros-1-7.fc37.noarch
fedora-release-identity-basic-38-0.6.noarch
shadow-utils-4.13-3.fc38.i686
libpkgconf-1.8.0-3.fc37.i686
bzip2-1.0.8-12.fc37.i686
elfutils-0.188-3.fc38.i686
efi-srpm-macros-5-6.fc37.noarch
filesystem-3.18-2.fc37.i686
dwz-0.15-1.fc38.i686
libnsl2-2.0.0-4.fc37.i686
ocaml-srpm-macros-7-2.fc37.noarch
rpm-build-libs-4.18.0-8.fc38.i686
libgomp-13.0.0-0.4.fc38.i686
go-srpm-macros-3.2.0-1.fc38.noarch
libdb-5.3.28-54.fc38.i686
libutempter-1.2.1-7.fc37.i686
coreutils-9.1-8.fc38.i686
util-linux-core-2.38.1-3.fc38.i686
mpfr-4.1.1-2.fc38.i686
gdb-minimal-12.1-10.fc38.i686
debugedit-5.0-5.fc37.i686
which-2.21-36.fc38.i686
libfdisk-2.38.1-3.fc38.i686
rpm-sequoia-1.2.0-1.fc38.i686
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
jansson-2.13.1-5.fc37.i686
nettle-3.8-2.fc37.i686
cpio-2.13-13.fc38.i686
elfutils-libs-0.188-3.fc38.i686
sed-4.8-11.fc37.i686
pkgconf-pkg-config-1.8.0-3.fc37.i686
libpwquality-1.4.4-11.fc37.i686
ncurses-libs-6.3-5.20221126.fc38.i686
libverto-0.3.2-4.fc37.i686
rust-srpm-macros-23-1.fc38.noarch
glibc-gconv-extra-2.36.9000-19.fc38.i686
file-5.42-4.fc37.i686
libcap-2.48-5.fc37.i686
libcurl-7.87.0-1.fc38.i686
findutils-4.9.0-2.fc37.i686
curl-7.87.0-1.fc38.i686
ghc-srpm-macros-1.5.0-7.fc37.noarch
authselect-libs-1.4.2-1.fc38.i686
libarchive-3.6.1-3.fc38.i686
patch-2.7.6-17.fc37.i686
elfutils-debuginfod-client-0.188-3.fc38.i686
diffutils-3.8-3.fc37.i686
binutils-gold-2.39-6.fc38.i686
libacl-2.3.1-4.fc38.i686
glibc-minimal-langpack-2.36.9000-19.fc38.i686
openblas-srpm-macros-2-12.fc37.noarch
bash-5.2.9-3.fc38.i686
popt-1.19-1.fc38.i686
cracklib-2.9.7-30.fc38.i686
libblkid-2.38.1-3.fc38.i686
util-linux-2.38.1-3.fc38.i686
libselinux-3.4-6.fc38.i686
ncurses-base-6.3-5.20221126.fc38.noarch
libzstd-1.5.2-3.fc37.i686
basesystem-11-14.fc37.noarch
libidn2-2.3.4-1.fc38.i686
cyrus-sasl-lib-2.1.28-8.fc38.i686
publicsuffix-list-dafsa-20221208-1.fc38.noarch
krb5-libs-1.20.1-3.fc38.i686
fpc-srpm-macros-1.3-6.fc37.noarch
rpm-build-4.18.0-8.fc38.i686
openldap-2.6.3-1.fc38.i686
elfutils-default-yama-scope-0.188-3.fc38.noarch
nim-srpm-macros-3-7.fc37.noarch
libffi-3.4.4-1.fc38.i686
gawk-5.1.1-4.fc37.i686
rpm-libs-4.18.0-8.fc38.i686
audit-libs-3.0.9-2.fc38.i686
glibc-2.36.9000-19.fc38.i686
redhat-rpm-config-235-1.fc38.noarch
xz-5.2.9-1.fc38.i686
libunistring-1.0-2.fc37.i686
libevent-2.1.12-7.fc37.i686
gnat-srpm-macros-4-16.fc37.noarch
ed-1.18-2.fc37.i686
package-notes-srpm-macros-0.5-6.fc38.noarch
python-srpm-macros-3.11-6.fc38.noarch
libxml2-2.10.3-2.fc38.i686
alternatives-1.21-1.fc38.i686
file-libs-5.42-4.fc37.i686
zlib-1.2.13-1.fc38.i686
gzip-1.12-2.fc37.i686
libtasn1-4.19.0-1.fc38.i686
libstdc++-13.0.0-0.4.fc38.i686
fedora-repos-38-0.3.noarch
pkgconf-m4-1.8.0-3.fc37.noarch
libmount-2.38.1-3.fc38.i686
perl-srpm-macros-1-47.fc38.noarch
pcre2-syntax-10.40-1.fc37.1.noarch
unzip-6.0-58.fc38.i686
rpm-4.18.0-8.fc38.i686
info-7.0.1-1.fc38.i686
xxhash-libs-0.8.1-3.fc37.i686
libattr-2.5.1-5.fc38.i686
libsmartcols-2.38.1-3.fc38.i686
tzdata-2022g-1.fc38.noarch
pam-1.5.2-15.fc38.i686
zstd-1.5.2-3.fc37.i686
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
kernel-srpm-macros-1.0-15.fc37.noarch
binutils-2.39-6.fc38.i686
libssh-config-0.10.4-2.fc38.noarch
grep-3.8-1.fc38.i686
fonts-srpm-macros-2.0.5-10.fc38.noarch
libsepol-3.4-4.fc38.i686
libbrotli-1.0.9-9.fc37.i686
pkgconf-1.8.0-3.fc37.i686
authselect-1.4.2-1.fc38.i686
pam-libs-1.5.2-15.fc38.i686
ansible-srpm-macros-1-8.1.fc38.noarch
zip-3.0-35.fc38.i686
libxcrypt-4.4.33-5.fc38.i686
fedora-release-common-38-0.6.noarch
ca-certificates-2022.2.54-5.fc37.noarch
readline-8.2-2.fc38.i686
lz4-libs-1.9.3-5.fc37.i686
libcap-ng-0.8.3-4.fc38.i686
libsigsegv-2.14-3.fc37.i686
openssl-libs-3.0.5-6.fc38.i686
fedora-repos-rawhide-38-0.3.noarch
Start: buildsrpm
Start: rpmbuild -bs
sh: line 1: /usr/bin/perl: No such file or directory
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1670716800
Wrote: /builddir/build/SRPMS/bionetgen-2.8.4-3.fc38.src.rpm
Finish: rpmbuild -bs
cp: ‘var/lib/mock/fedora-rawhide-i686-1671798920.414241/root/var/log’: No such file or directory
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1671798920.414241/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-i686-1671798920.414241/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-i686-1671798920.414241/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-puici_4j/bionetgen/bionetgen.spec) Config(child) 1 minutes 7 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=115200): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/bionetgen-2.8.4-3.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1671798920.414241 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/bionetgen-2.8.4-3.fc38.src.rpm) Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1671798920.414241/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1671798920.414241/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1671798920.414241/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 71 kB/s | 3.0 kB 00:00
Copr repository 12 MB/s | 3.6 MB 00:00
Additional repo https_jakub_fedorapeople_org_fe 11 kB/s | 3.0 kB 00:00
local 16 kB/s | 3.8 kB 00:00
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for bionetgen-2.8.4-3.fc38.src.rpm
Start: build setup for bionetgen-2.8.4-3.fc38.src.rpm
sh: line 1: /usr/bin/perl: No such file or directory
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1670716800
Wrote: /builddir/build/SRPMS/bionetgen-2.8.4-3.fc38.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 13 kB/s | 3.0 kB 00:00
Additional repo https_jakub_fedorapeople_org_fe 2.4 kB/s | 3.0 kB 00:01
local 16 kB/s | 3.8 kB 00:00
Dependencies resolved.
=============================================================================================================
Package Arch Version Repository Size
=============================================================================================================
Installing:
cmake i686 3.25.1-1.fc38 local 7.2 M
gcc i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 34 M
gcc-c++ i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 13 M
gcc-gfortran i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 12 M
make i686 1:4.3-11.fc37 local 540 k
perl-Carp noarch 1.52-489.fc37 local 29 k
perl-Class-Struct noarch 0.66-492.fc38 local 25 k
perl-Data-Dumper i686 2.184-490.fc37 local 58 k
perl-Exporter noarch 5.77-489.fc37 local 31 k
perl-File-Basename noarch 2.85-492.fc38 local 20 k
perl-FindBin noarch 1.53-492.fc38 local 17 k
perl-Getopt-Long noarch 1:2.54-1.fc38 local 60 k
perl-IO i686 1.50-492.fc38 local 91 k
perl-IPC-Open3 noarch 1.22-492.fc38 local 26 k
perl-Math-Complex noarch 1.59-492.fc38 local 50 k
perl-POSIX i686 2.03-492.fc38 local 104 k
perl-PathTools i686 3.84-489.fc37 local 85 k
perl-Scalar-List-Utils i686 5:1.63-489.fc38 local 76 k
perl-Symbol noarch 1.09-492.fc38 local 17 k
perl-constant noarch 1.33-490.fc37 local 23 k
perl-generators noarch 1.15-1.fc38 local 16 k
perl-interpreter i686 4:5.36.0-492.fc38 local 75 k
perl-lib i686 0.65-492.fc38 local 18 k
perl-libs i686 4:5.36.0-492.fc38 local 2.2 M
perl-vars noarch 1.05-492.fc38 local 16 k
Installing dependencies:
annobin-docs noarch 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 93 k
annobin-plugin-gcc i686 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 889 k
cmake-data noarch 3.25.1-1.fc38 local 1.7 M
cmake-filesystem i686 3.25.1-1.fc38 local 16 k
cmake-rpm-macros noarch 3.25.1-1.fc38 local 16 k
cpp i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 11 M
emacs-filesystem noarch 1:28.1-3.fc37 local 9.5 k
expat i686 2.5.0-1.fc38 local 115 k
gc i686 8.2.2-1.fc38 local 112 k
gcc-plugin-annobin i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 30 k
glibc-devel i686 2.36.9000-19.fc38 local 43 k
glibc-headers-x86 noarch 2.36.9000-19.fc38 local 450 k
groff-base i686 1.22.4-10.fc37 local 1.0 M
guile22 i686 2.2.7-6.fc37 local 6.5 M
jsoncpp i686 1.9.5-3.fc37 local 108 k
kernel-headers i686 6.1.0-1.fc38 local 1.4 M
libasan i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 491 k
libatomic i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 17 k
libb2 i686 0.98.1-7.fc37 local 35 k
libgfortran i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 825 k
libmpc i686 1.2.1-5.fc37 local 65 k
libquadmath i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 225 k
libquadmath-devel i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 20 k
libstdc++-devel i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 2.4 M
libtool-ltdl i686 2.4.7-3.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 39 k
libubsan i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 219 k
libuv i686 1:1.44.2-2.fc37 local 159 k
libxcrypt-devel i686 4.4.33-5.fc38 local 30 k
mpdecimal i686 2.5.1-4.fc37 local 106 k
ncurses i686 6.3-5.20221126.fc38 local 409 k
perl-B i686 1.83-492.fc38 local 189 k
perl-DynaLoader i686 1.52-492.fc38 local 29 k
perl-Encode i686 4:3.19-492.fc38 local 1.2 M
perl-Errno i686 1.36-492.fc38 local 18 k
perl-Fcntl i686 1.15-492.fc38 local 24 k
perl-Fedora-VSP noarch 0.001-30.fc38 local 23 k
perl-File-Path noarch 2.18-489.fc37 local 35 k
perl-File-Temp noarch 1:0.231.100-489.fc37 local 59 k
perl-File-stat noarch 1.12-492.fc38 local 20 k
perl-Getopt-Std noarch 1.13-492.fc38 local 19 k
perl-HTTP-Tiny noarch 0.082-1.fc37 local 55 k
perl-MIME-Base64 i686 3.16-489.fc37 local 31 k
perl-Pod-Escapes noarch 1:1.07-489.fc37 local 20 k
perl-Pod-Perldoc noarch 3.28.01-490.fc37 local 84 k
perl-Pod-Simple noarch 1:3.43-490.fc37 local 215 k
perl-Pod-Usage noarch 4:2.03-3.fc37 local 40 k
perl-SelectSaver noarch 1.02-492.fc38 local 15 k
perl-Socket i686 4:2.036-1.fc38 local 56 k
perl-Storable i686 1:3.26-489.fc37 local 99 k
perl-Term-ANSIColor noarch 5.01-490.fc37 local 48 k
perl-Term-Cap noarch 1.17-489.fc37 local 22 k
perl-Text-ParseWords noarch 3.31-489.fc37 local 16 k
perl-Text-Tabs+Wrap noarch 2021.0814-489.fc37 local 22 k
perl-Time-Local noarch 2:1.300-489.fc37 local 33 k
perl-if noarch 0.61.000-492.fc38 local 17 k
perl-macros noarch 4:5.36.0-492.fc38 local 14 k
perl-mro i686 1.26-492.fc38 local 32 k
perl-overload noarch 1.35-492.fc38 local 49 k
perl-overloading noarch 0.02-492.fc38 local 16 k
perl-parent noarch 1:0.239-1.fc38 local 14 k
perl-podlators noarch 1:5.00-1.fc38 local 122 k
python-pip-wheel noarch 22.3.1-1.fc38 local 1.4 M
python-setuptools-wheel noarch 65.5.1-1.fc38 local 715 k
python3 i686 3.11.1-1.fc38 local 27 k
python3-libs i686 3.11.1-1.fc38 local 9.3 M
rhash i686 1.4.3-1.fc38 local 210 k
vim-filesystem noarch 2:9.0.1054-1.fc38 local 19 k
Transaction Summary
=============================================================================================================
Install 92 Packages
Total download size: 113 M
Installed size: 364 M
Downloading Packages:
(1/92): annobin-docs-10.99-1.0.1.fc38.noarch.rp 287 kB/s | 93 kB 00:00
(2/92): annobin-plugin-gcc-10.99-1.0.1.fc38.i68 2.1 MB/s | 889 kB 00:00
(3/92): cpp-13.0.0-0.4.fc38.i686.rpm 24 MB/s | 11 MB 00:00
(4/92): gcc-c++-13.0.0-0.4.fc38.i686.rpm 83 MB/s | 13 MB 00:00
(5/92): gcc-plugin-annobin-13.0.0-0.4.fc38.i686 2.1 MB/s | 30 kB 00:00
(6/92): gcc-gfortran-13.0.0-0.4.fc38.i686.rpm 75 MB/s | 12 MB 00:00
(7/92): libasan-13.0.0-0.4.fc38.i686.rpm 20 MB/s | 491 kB 00:00
(8/92): libatomic-13.0.0-0.4.fc38.i686.rpm 1.0 MB/s | 17 kB 00:00
(9/92): libgfortran-13.0.0-0.4.fc38.i686.rpm 28 MB/s | 825 kB 00:00
(10/92): libquadmath-13.0.0-0.4.fc38.i686.rpm 11 MB/s | 225 kB 00:00
(11/92): libquadmath-devel-13.0.0-0.4.fc38.i686 1.1 MB/s | 20 kB 00:00
(12/92): libtool-ltdl-2.4.7-3.0.1.fc38.i686.rpm 3.4 MB/s | 39 kB 00:00
(13/92): libstdc++-devel-13.0.0-0.4.fc38.i686.r 75 MB/s | 2.4 MB 00:00
(14/92): libubsan-13.0.0-0.4.fc38.i686.rpm 18 MB/s | 219 kB 00:00
(15/92): gcc-13.0.0-0.4.fc38.i686.rpm 75 MB/s | 34 MB 00:00
(16/92): cmake-data-3.25.1-1.fc38.noarch.rpm 20 MB/s | 1.7 MB 00:00
(17/92): cmake-rpm-macros-3.25.1-1.fc38.noarch. 5.0 MB/s | 16 kB 00:00
(18/92): cmake-filesystem-3.25.1-1.fc38.i686.rp 967 kB/s | 16 kB 00:00
(19/92): emacs-filesystem-28.1-3.fc37.noarch.rp 3.7 MB/s | 9.5 kB 00:00
(20/92): expat-2.5.0-1.fc38.i686.rpm 22 MB/s | 115 kB 00:00
(21/92): gc-8.2.2-1.fc38.i686.rpm 26 MB/s | 112 kB 00:00
(22/92): glibc-devel-2.36.9000-19.fc38.i686.rpm 11 MB/s | 43 kB 00:00
(23/92): glibc-headers-x86-2.36.9000-19.fc38.no 43 MB/s | 450 kB 00:00
(24/92): groff-base-1.22.4-10.fc37.i686.rpm 57 MB/s | 1.0 MB 00:00
(25/92): jsoncpp-1.9.5-3.fc37.i686.rpm 20 MB/s | 108 kB 00:00
(26/92): kernel-headers-6.1.0-1.fc38.i686.rpm 65 MB/s | 1.4 MB 00:00
(27/92): libb2-0.98.1-7.fc37.i686.rpm 3.2 MB/s | 35 kB 00:00
(28/92): libmpc-1.2.1-5.fc37.i686.rpm 16 MB/s | 65 kB 00:00
(29/92): libuv-1.44.2-2.fc37.i686.rpm 28 MB/s | 159 kB 00:00
(30/92): libxcrypt-devel-4.4.33-5.fc38.i686.rpm 5.5 MB/s | 30 kB 00:00
(31/92): make-4.3-11.fc37.i686.rpm 45 MB/s | 540 kB 00:00
(32/92): guile22-2.2.7-6.fc37.i686.rpm 73 MB/s | 6.5 MB 00:00
(33/92): mpdecimal-2.5.1-4.fc37.i686.rpm 11 MB/s | 106 kB 00:00
(34/92): cmake-3.25.1-1.fc38.i686.rpm 34 MB/s | 7.2 MB 00:00
(35/92): perl-B-1.83-492.fc38.i686.rpm 13 MB/s | 189 kB 00:00
(36/92): ncurses-6.3-5.20221126.fc38.i686.rpm 26 MB/s | 409 kB 00:00
(37/92): perl-Class-Struct-0.66-492.fc38.noarch 9.0 MB/s | 25 kB 00:00
(38/92): perl-Carp-1.52-489.fc37.noarch.rpm 6.7 MB/s | 29 kB 00:00
(39/92): perl-Data-Dumper-2.184-490.fc37.i686.r 12 MB/s | 58 kB 00:00
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(41/92): perl-Errno-1.36-492.fc38.i686.rpm 5.3 MB/s | 18 kB 00:00
(42/92): perl-Exporter-5.77-489.fc37.noarch.rpm 7.9 MB/s | 31 kB 00:00
(43/92): perl-Fcntl-1.15-492.fc38.i686.rpm 7.2 MB/s | 24 kB 00:00
(44/92): perl-File-Basename-2.85-492.fc38.noarc 5.7 MB/s | 20 kB 00:00
(45/92): perl-Fedora-VSP-0.001-30.fc38.noarch.r 3.8 MB/s | 23 kB 00:00
(46/92): perl-Encode-3.19-492.fc38.i686.rpm 61 MB/s | 1.2 MB 00:00
(47/92): perl-File-Path-2.18-489.fc37.noarch.rp 5.2 MB/s | 35 kB 00:00
(48/92): perl-File-Temp-0.231.100-489.fc37.noar 11 MB/s | 59 kB 00:00
(49/92): perl-File-stat-1.12-492.fc38.noarch.rp 6.7 MB/s | 20 kB 00:00
(50/92): perl-FindBin-1.53-492.fc38.noarch.rpm 5.1 MB/s | 17 kB 00:00
(51/92): perl-Getopt-Long-2.54-1.fc38.noarch.rp 14 MB/s | 60 kB 00:00
(52/92): perl-Getopt-Std-1.13-492.fc38.noarch.r 6.1 MB/s | 19 kB 00:00
(53/92): perl-HTTP-Tiny-0.082-1.fc37.noarch.rpm 12 MB/s | 55 kB 00:00
(54/92): perl-IO-1.50-492.fc38.i686.rpm 23 MB/s | 91 kB 00:00
(55/92): perl-IPC-Open3-1.22-492.fc38.noarch.rp 7.1 MB/s | 26 kB 00:00
(56/92): perl-MIME-Base64-3.16-489.fc37.i686.rp 11 MB/s | 31 kB 00:00
(57/92): perl-POSIX-2.03-492.fc38.i686.rpm 20 MB/s | 104 kB 00:00
(58/92): perl-Math-Complex-1.59-492.fc38.noarch 7.7 MB/s | 50 kB 00:00
(59/92): perl-PathTools-3.84-489.fc37.i686.rpm 20 MB/s | 85 kB 00:00
(60/92): perl-Pod-Escapes-1.07-489.fc37.noarch. 6.7 MB/s | 20 kB 00:00
(61/92): perl-Pod-Perldoc-3.28.01-490.fc37.noar 22 MB/s | 84 kB 00:00
(62/92): perl-Pod-Simple-3.43-490.fc37.noarch.r 36 MB/s | 215 kB 00:00
(63/92): perl-Pod-Usage-2.03-3.fc37.noarch.rpm 11 MB/s | 40 kB 00:00
(64/92): perl-Socket-2.036-1.fc38.i686.rpm 16 MB/s | 56 kB 00:00
(65/92): perl-SelectSaver-1.02-492.fc38.noarch. 1.5 MB/s | 15 kB 00:00
(66/92): perl-Symbol-1.09-492.fc38.noarch.rpm 7.1 MB/s | 17 kB 00:00
(67/92): perl-Term-ANSIColor-5.01-490.fc37.noar 15 MB/s | 48 kB 00:00
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(69/92): perl-Scalar-List-Utils-1.63-489.fc38.i 3.0 MB/s | 76 kB 00:00
(70/92): perl-Text-ParseWords-3.31-489.fc37.noa 3.3 MB/s | 16 kB 00:00
(71/92): perl-Text-Tabs+Wrap-2021.0814-489.fc37 7.3 MB/s | 22 kB 00:00
(72/92): perl-Time-Local-1.300-489.fc37.noarch. 12 MB/s | 33 kB 00:00
(73/92): perl-constant-1.33-490.fc37.noarch.rpm 7.1 MB/s | 23 kB 00:00
(74/92): perl-if-0.61.000-492.fc38.noarch.rpm 5.2 MB/s | 17 kB 00:00
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(76/92): perl-interpreter-5.36.0-492.fc38.i686. 17 MB/s | 75 kB 00:00
(77/92): perl-lib-0.65-492.fc38.i686.rpm 6.5 MB/s | 18 kB 00:00
(78/92): perl-macros-5.36.0-492.fc38.noarch.rpm 4.8 MB/s | 14 kB 00:00
(79/92): perl-mro-1.26-492.fc38.i686.rpm 10 MB/s | 32 kB 00:00
(80/92): perl-overload-1.35-492.fc38.noarch.rpm 12 MB/s | 49 kB 00:00
(81/92): perl-overloading-0.02-492.fc38.noarch. 5.2 MB/s | 16 kB 00:00
(82/92): perl-parent-0.239-1.fc38.noarch.rpm 4.2 MB/s | 14 kB 00:00
(83/92): perl-podlators-5.00-1.fc38.noarch.rpm 23 MB/s | 122 kB 00:00
(84/92): perl-libs-5.36.0-492.fc38.i686.rpm 73 MB/s | 2.2 MB 00:00
(85/92): perl-vars-1.05-492.fc38.noarch.rpm 2.7 MB/s | 16 kB 00:00
(86/92): python-setuptools-wheel-65.5.1-1.fc38. 41 MB/s | 715 kB 00:00
(87/92): python-pip-wheel-22.3.1-1.fc38.noarch. 62 MB/s | 1.4 MB 00:00
(88/92): python3-3.11.1-1.fc38.i686.rpm 6.4 MB/s | 27 kB 00:00
(89/92): rhash-1.4.3-1.fc38.i686.rpm 9.9 MB/s | 210 kB 00:00
(90/92): vim-filesystem-9.0.1054-1.fc38.noarch. 6.2 MB/s | 19 kB 00:00
(91/92): python3-libs-3.11.1-1.fc38.i686.rpm 85 MB/s | 9.3 MB 00:00
(92/92): perl-Storable-3.26-489.fc37.i686.rpm 466 kB/s | 99 kB 00:00
--------------------------------------------------------------------------------
Total 95 MB/s | 113 MB 00:01
Running transaction check
Transaction check succeeded.
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Running transaction
Preparing : 1/1
Installing : cmake-filesystem-3.25.1-1.fc38.i686 1/92
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Installing : emacs-filesystem-1:28.1-3.fc37.noarch 9/92
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Verifying : perl-Math-Complex-1.59-492.fc38.noarch 57/92
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Verifying : perl-Pod-Simple-1:3.43-490.fc37.noarch 62/92
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Installed:
annobin-docs-10.99-1.0.1.fc38.noarch
annobin-plugin-gcc-10.99-1.0.1.fc38.i686
cmake-3.25.1-1.fc38.i686
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cmake-rpm-macros-3.25.1-1.fc38.noarch
cpp-13.0.0-0.4.fc38.i686
emacs-filesystem-1:28.1-3.fc37.noarch
expat-2.5.0-1.fc38.i686
gc-8.2.2-1.fc38.i686
gcc-13.0.0-0.4.fc38.i686
gcc-c++-13.0.0-0.4.fc38.i686
gcc-gfortran-13.0.0-0.4.fc38.i686
gcc-plugin-annobin-13.0.0-0.4.fc38.i686
glibc-devel-2.36.9000-19.fc38.i686
glibc-headers-x86-2.36.9000-19.fc38.noarch
groff-base-1.22.4-10.fc37.i686
guile22-2.2.7-6.fc37.i686
jsoncpp-1.9.5-3.fc37.i686
kernel-headers-6.1.0-1.fc38.i686
libasan-13.0.0-0.4.fc38.i686
libatomic-13.0.0-0.4.fc38.i686
libb2-0.98.1-7.fc37.i686
libgfortran-13.0.0-0.4.fc38.i686
libmpc-1.2.1-5.fc37.i686
libquadmath-13.0.0-0.4.fc38.i686
libquadmath-devel-13.0.0-0.4.fc38.i686
libstdc++-devel-13.0.0-0.4.fc38.i686
libtool-ltdl-2.4.7-3.0.1.fc38.i686
libubsan-13.0.0-0.4.fc38.i686
libuv-1:1.44.2-2.fc37.i686
libxcrypt-devel-4.4.33-5.fc38.i686
make-1:4.3-11.fc37.i686
mpdecimal-2.5.1-4.fc37.i686
ncurses-6.3-5.20221126.fc38.i686
perl-B-1.83-492.fc38.i686
perl-Carp-1.52-489.fc37.noarch
perl-Class-Struct-0.66-492.fc38.noarch
perl-Data-Dumper-2.184-490.fc37.i686
perl-DynaLoader-1.52-492.fc38.i686
perl-Encode-4:3.19-492.fc38.i686
perl-Errno-1.36-492.fc38.i686
perl-Exporter-5.77-489.fc37.noarch
perl-Fcntl-1.15-492.fc38.i686
perl-Fedora-VSP-0.001-30.fc38.noarch
perl-File-Basename-2.85-492.fc38.noarch
perl-File-Path-2.18-489.fc37.noarch
perl-File-Temp-1:0.231.100-489.fc37.noarch
perl-File-stat-1.12-492.fc38.noarch
perl-FindBin-1.53-492.fc38.noarch
perl-Getopt-Long-1:2.54-1.fc38.noarch
perl-Getopt-Std-1.13-492.fc38.noarch
perl-HTTP-Tiny-0.082-1.fc37.noarch
perl-IO-1.50-492.fc38.i686
perl-IPC-Open3-1.22-492.fc38.noarch
perl-MIME-Base64-3.16-489.fc37.i686
perl-Math-Complex-1.59-492.fc38.noarch
perl-POSIX-2.03-492.fc38.i686
perl-PathTools-3.84-489.fc37.i686
perl-Pod-Escapes-1:1.07-489.fc37.noarch
perl-Pod-Perldoc-3.28.01-490.fc37.noarch
perl-Pod-Simple-1:3.43-490.fc37.noarch
perl-Pod-Usage-4:2.03-3.fc37.noarch
perl-Scalar-List-Utils-5:1.63-489.fc38.i686
perl-SelectSaver-1.02-492.fc38.noarch
perl-Socket-4:2.036-1.fc38.i686
perl-Storable-1:3.26-489.fc37.i686
perl-Symbol-1.09-492.fc38.noarch
perl-Term-ANSIColor-5.01-490.fc37.noarch
perl-Term-Cap-1.17-489.fc37.noarch
perl-Text-ParseWords-3.31-489.fc37.noarch
perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch
perl-Time-Local-2:1.300-489.fc37.noarch
perl-constant-1.33-490.fc37.noarch
perl-generators-1.15-1.fc38.noarch
perl-if-0.61.000-492.fc38.noarch
perl-interpreter-4:5.36.0-492.fc38.i686
perl-lib-0.65-492.fc38.i686
perl-libs-4:5.36.0-492.fc38.i686
perl-macros-4:5.36.0-492.fc38.noarch
perl-mro-1.26-492.fc38.i686
perl-overload-1.35-492.fc38.noarch
perl-overloading-0.02-492.fc38.noarch
perl-parent-1:0.239-1.fc38.noarch
perl-podlators-1:5.00-1.fc38.noarch
perl-vars-1.05-492.fc38.noarch
python-pip-wheel-22.3.1-1.fc38.noarch
python-setuptools-wheel-65.5.1-1.fc38.noarch
python3-3.11.1-1.fc38.i686
python3-libs-3.11.1-1.fc38.i686
rhash-1.4.3-1.fc38.i686
vim-filesystem-2:9.0.1054-1.fc38.noarch
Complete!
Finish: build setup for bionetgen-2.8.4-3.fc38.src.rpm
Start: rpmbuild bionetgen-2.8.4-3.fc38.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1670716800
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.aL9iZW
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf bionetgen-2.8.4
+ /usr/bin/mkdir -p bionetgen-2.8.4
+ cd bionetgen-2.8.4
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bionetgen-BioNetGen-2.8.4.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ pushd bionetgen-BioNetGen-2.8.4
~/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4 ~/build/BUILD/bionetgen-2.8.4
+ rm -f bng2/libsource/gsl-1.9.tar.gz bng2/libsource/Mathutils.tar.gz bng2/libsource/muparser_v2_2_4.zip
+ tar -xvf bng2/libsource/cvode-2.6.0.tar.gz -C bng2/Network3
cvode-2.6.0/README
cvode-2.6.0/INSTALL_NOTES
cvode-2.6.0/LICENSE
cvode-2.6.0/Makefile.in
cvode-2.6.0/configure.ac
cvode-2.6.0/acinclude.m4
cvode-2.6.0/config.hin
cvode-2.6.0/configure
cvode-2.6.0/CMakeLists.txt
cvode-2.6.0/config/config.guess
cvode-2.6.0/config/config.sub
cvode-2.6.0/config/install-sh
cvode-2.6.0/config/mkinstalldirs
cvode-2.6.0/config/rminstalldirs
cvode-2.6.0/config/ltmain.sh
cvode-2.6.0/config/mod_c.m4
cvode-2.6.0/config/mod_fortran.m4
cvode-2.6.0/config/cust_general.m4
cvode-2.6.0/config/CheckFortranFunctionExists.cmake
cvode-2.6.0/config/SundialsFortran.cmake
cvode-2.6.0/config/SundialsLapack.cmake
cvode-2.6.0/config/SundialsMPIC.cmake
cvode-2.6.0/config/SundialsMPIF.cmake
cvode-2.6.0/config/FindLAPACK.cmake
cvode-2.6.0/config/FindBLAS.cmake
cvode-2.6.0/config/FindMPI.cmake
cvode-2.6.0/bin/sundials-config.in
cvode-2.6.0/bin/fortran-update.in
cvode-2.6.0/bin/makefile-update.in
cvode-2.6.0/include/sundials/sundials_config.in
cvode-2.6.0/include/sundials/sundials_types.h
cvode-2.6.0/include/sundials/sundials_math.h
cvode-2.6.0/include/sundials/sundials_nvector.h
cvode-2.6.0/include/sundials/sundials_fnvector.h
cvode-2.6.0/include/sundials/sundials_dense.h
cvode-2.6.0/include/sundials/sundials_direct.h
cvode-2.6.0/include/sundials/sundials_band.h
cvode-2.6.0/include/sundials/sundials_lapack.h
cvode-2.6.0/include/sundials/sundials_spgmr.h
cvode-2.6.0/include/sundials/sundials_spbcgs.h
cvode-2.6.0/include/sundials/sundials_sptfqmr.h
cvode-2.6.0/include/sundials/sundials_iterative.h
cvode-2.6.0/include/nvector/nvector_serial.h
cvode-2.6.0/include/nvector/nvector_parallel.h
cvode-2.6.0/src/sundials/README
cvode-2.6.0/src/sundials/Makefile.in
cvode-2.6.0/src/sundials/CMakeLists.txt
cvode-2.6.0/src/sundials/sundials_math.c
cvode-2.6.0/src/sundials/sundials_nvector.c
cvode-2.6.0/src/sundials/sundials_dense.c
cvode-2.6.0/src/sundials/sundials_direct.c
cvode-2.6.0/src/sundials/sundials_band.c
cvode-2.6.0/src/sundials/sundials_spgmr.c
cvode-2.6.0/src/sundials/sundials_spbcgs.c
cvode-2.6.0/src/sundials/sundials_sptfqmr.c
cvode-2.6.0/src/sundials/sundials_iterative.c
cvode-2.6.0/src/nvec_ser/README
cvode-2.6.0/src/nvec_ser/Makefile.in
cvode-2.6.0/src/nvec_ser/CMakeLists.txt
cvode-2.6.0/src/nvec_ser/fnvector_serial.h
cvode-2.6.0/src/nvec_ser/nvector_serial.c
cvode-2.6.0/src/nvec_ser/fnvector_serial.c
cvode-2.6.0/src/nvec_par/README
cvode-2.6.0/src/nvec_par/Makefile.in
cvode-2.6.0/src/nvec_par/CMakeLists.txt
cvode-2.6.0/src/nvec_par/fnvector_parallel.h
cvode-2.6.0/src/nvec_par/nvector_parallel.c
cvode-2.6.0/src/nvec_par/fnvector_parallel.c
cvode-2.6.0/examples/templates/cmakelists_parallel_C_ex.in
cvode-2.6.0/examples/templates/cmakelists_parallel_F77_ex.in
cvode-2.6.0/examples/templates/cmakelists_serial_C_ex.in
cvode-2.6.0/examples/templates/cmakelists_serial_F77_ex.in
cvode-2.6.0/examples/templates/makefile_parallel_C_ex.in
cvode-2.6.0/examples/templates/makefile_parallel_F77_ex.in
cvode-2.6.0/examples/templates/makefile_serial_C_ex.in
cvode-2.6.0/examples/templates/makefile_serial_F77_ex.in
cvode-2.6.0/doc/cvode/cv_guide.pdf
cvode-2.6.0/doc/cvode/cv_examples.pdf
cvode-2.6.0/include/cvode/cvode.h
cvode-2.6.0/include/cvode/cvode_direct.h
cvode-2.6.0/include/cvode/cvode_dense.h
cvode-2.6.0/include/cvode/cvode_band.h
cvode-2.6.0/include/cvode/cvode_lapack.h
cvode-2.6.0/include/cvode/cvode_diag.h
cvode-2.6.0/include/cvode/cvode_spgmr.h
cvode-2.6.0/include/cvode/cvode_spbcgs.h
cvode-2.6.0/include/cvode/cvode_sptfqmr.h
cvode-2.6.0/include/cvode/cvode_spils.h
cvode-2.6.0/include/cvode/cvode_bandpre.h
cvode-2.6.0/include/cvode/cvode_bbdpre.h
cvode-2.6.0/src/cvode/LICENSE
cvode-2.6.0/src/cvode/README
cvode-2.6.0/src/cvode/Makefile.in
cvode-2.6.0/src/cvode/CMakeLists.txt
cvode-2.6.0/src/cvode/cvode.c
cvode-2.6.0/src/cvode/cvode_io.c
cvode-2.6.0/src/cvode/cvode_direct.c
cvode-2.6.0/src/cvode/cvode_dense.c
cvode-2.6.0/src/cvode/cvode_band.c
cvode-2.6.0/src/cvode/cvode_lapack.c
cvode-2.6.0/src/cvode/cvode_diag.c
cvode-2.6.0/src/cvode/cvode_spils.c
cvode-2.6.0/src/cvode/cvode_spgmr.c
cvode-2.6.0/src/cvode/cvode_spbcgs.c
cvode-2.6.0/src/cvode/cvode_sptfqmr.c
cvode-2.6.0/src/cvode/cvode_bandpre.c
cvode-2.6.0/src/cvode/cvode_bbdpre.c
cvode-2.6.0/src/cvode/cvode_impl.h
cvode-2.6.0/src/cvode/cvode_direct_impl.h
cvode-2.6.0/src/cvode/cvode_diag_impl.h
cvode-2.6.0/src/cvode/cvode_spils_impl.h
cvode-2.6.0/src/cvode/cvode_bandpre_impl.h
cvode-2.6.0/src/cvode/cvode_bbdpre_impl.h
cvode-2.6.0/src/cvode/fcmix/Makefile.in
cvode-2.6.0/src/cvode/fcmix/CMakeLists.txt
cvode-2.6.0/src/cvode/fcmix/fcvode.c
cvode-2.6.0/src/cvode/fcmix/fcvewt.c
cvode-2.6.0/src/cvode/fcmix/fcvpreco.c
cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c
cvode-2.6.0/src/cvode/fcmix/fcvband.c
cvode-2.6.0/src/cvode/fcmix/fcvdense.c
cvode-2.6.0/src/cvode/fcmix/fcvlapack.c
cvode-2.6.0/src/cvode/fcmix/fcvlapband.c
cvode-2.6.0/src/cvode/fcmix/fcvlapdense.c
cvode-2.6.0/src/cvode/fcmix/fcvbp.c
cvode-2.6.0/src/cvode/fcmix/fcvbbd.c
cvode-2.6.0/src/cvode/fcmix/fcvroot.c
cvode-2.6.0/src/cvode/fcmix/fcvode.h
cvode-2.6.0/src/cvode/fcmix/fcvbp.h
cvode-2.6.0/src/cvode/fcmix/fcvbbd.h
cvode-2.6.0/src/cvode/fcmix/fcvroot.h
cvode-2.6.0/examples/cvode/serial/README
cvode-2.6.0/examples/cvode/serial/Makefile.in
cvode-2.6.0/examples/cvode/serial/CMakeLists.txt
cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.c
cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.c
cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.out
cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.out
cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.c
cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.out
cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.c
cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.out
cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.c
cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.out
cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.c
cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.out
cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.c
cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.out
cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.c
cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.c
cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.out
cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.out
cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.c
cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.out
cvode-2.6.0/examples/cvode/fcmix_serial/README
cvode-2.6.0/examples/cvode/fcmix_serial/Makefile.in
cvode-2.6.0/examples/cvode/fcmix_serial/CMakeLists.txt
cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.out
cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.out
cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.out
cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.out
cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.out
cvode-2.6.0/examples/cvode/parallel/README
cvode-2.6.0/examples/cvode/parallel/Makefile.in
cvode-2.6.0/examples/cvode/parallel/CMakeLists.txt
cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.c
cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.out
cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.c
cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.out
cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.c
cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.out
cvode-2.6.0/examples/cvode/fcmix_parallel/README
cvode-2.6.0/examples/cvode/fcmix_parallel/Makefile.in
cvode-2.6.0/examples/cvode/fcmix_parallel/CMakeLists.txt
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.f
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.out
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.f
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.out
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.f
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.out
+ tar -xvf bng2/libsource/muparser_v2_2_4.tar.gz -C bng2/Network3
muparser_v2_2_4/._Changes.txt
muparser_v2_2_4/Changes.txt
muparser_v2_2_4/._Install.txt
muparser_v2_2_4/Install.txt
muparser_v2_2_4/._License.txt
muparser_v2_2_4/License.txt
muparser_v2_2_4/._Makefile.in
muparser_v2_2_4/Makefile.in
muparser_v2_2_4/._build
muparser_v2_2_4/build/
muparser_v2_2_4/build/._autoconf
muparser_v2_2_4/build/autoconf/
muparser_v2_2_4/build/._bakefiles
muparser_v2_2_4/build/bakefiles/
muparser_v2_2_4/build/._makefile.mingw
muparser_v2_2_4/build/makefile.mingw
muparser_v2_2_4/build/._makefile.vc
muparser_v2_2_4/build/makefile.vc
muparser_v2_2_4/build/._msvc2013
muparser_v2_2_4/build/msvc2013/
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muparser_v2_2_4/build/obj/
muparser_v2_2_4/build/msvc2013/._muparser.sln
muparser_v2_2_4/build/msvc2013/muparser.sln
muparser_v2_2_4/build/msvc2013/._muparser_example1.vcxproj
muparser_v2_2_4/build/msvc2013/muparser_example1.vcxproj
muparser_v2_2_4/build/msvc2013/._muparser_example1.vcxproj.filters
muparser_v2_2_4/build/msvc2013/muparser_example1.vcxproj.filters
muparser_v2_2_4/build/msvc2013/._muparser_example2.vcxproj
muparser_v2_2_4/build/msvc2013/muparser_example2.vcxproj
muparser_v2_2_4/build/msvc2013/._muparser_example2.vcxproj.filters
muparser_v2_2_4/build/msvc2013/muparser_example2.vcxproj.filters
muparser_v2_2_4/build/msvc2013/._muparser_muParser.vcxproj
muparser_v2_2_4/build/msvc2013/muparser_muParser.vcxproj
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muparser_v2_2_4/build/bakefiles/Bakefiles.bkgen
muparser_v2_2_4/build/bakefiles/._howto.txt
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muparser_v2_2_4/build/autoconf/acregen.sh
muparser_v2_2_4/build/autoconf/._autoconf_inc.m4
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muparser_v2_2_4/build/autoconf/._bakefile-presets.m4
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muparser_v2_2_4/._docs
muparser_v2_2_4/docs/
muparser_v2_2_4/docs/._Doxyfile
muparser_v2_2_4/docs/Doxyfile
muparser_v2_2_4/docs/._muparser_doc.html
muparser_v2_2_4/docs/muparser_doc.html
muparser_v2_2_4/._include
muparser_v2_2_4/include/
muparser_v2_2_4/include/._muParser.h
muparser_v2_2_4/include/muParser.h
muparser_v2_2_4/include/._muParserBase.h
muparser_v2_2_4/include/muParserBase.h
muparser_v2_2_4/include/._muParserBytecode.h
muparser_v2_2_4/include/muParserBytecode.h
muparser_v2_2_4/include/._muParserCallback.h
muparser_v2_2_4/include/muParserCallback.h
muparser_v2_2_4/include/._muParserDef.h
muparser_v2_2_4/include/muParserDef.h
muparser_v2_2_4/include/._muParserDLL.h
muparser_v2_2_4/include/muParserDLL.h
muparser_v2_2_4/include/._muParserError.h
muparser_v2_2_4/include/muParserError.h
muparser_v2_2_4/include/._muParserFixes.h
muparser_v2_2_4/include/muParserFixes.h
muparser_v2_2_4/include/._muParserInt.h
muparser_v2_2_4/include/muParserInt.h
muparser_v2_2_4/include/._muParserStack.h
muparser_v2_2_4/include/muParserStack.h
muparser_v2_2_4/include/._muParserTemplateMagic.h
muparser_v2_2_4/include/muParserTemplateMagic.h
muparser_v2_2_4/include/._muParserTest.h
muparser_v2_2_4/include/muParserTest.h
muparser_v2_2_4/include/._muParserToken.h
muparser_v2_2_4/include/muParserToken.h
muparser_v2_2_4/include/._muParserTokenReader.h
muparser_v2_2_4/include/muParserTokenReader.h
muparser_v2_2_4/._lib
muparser_v2_2_4/lib/
muparser_v2_2_4/lib/._Readme.txt
muparser_v2_2_4/lib/Readme.txt
muparser_v2_2_4/._samples
muparser_v2_2_4/samples/
muparser_v2_2_4/samples/._example1
muparser_v2_2_4/samples/example1/
muparser_v2_2_4/samples/._example2
muparser_v2_2_4/samples/example2/
muparser_v2_2_4/samples/example2/._example2.c
muparser_v2_2_4/samples/example2/example2.c
muparser_v2_2_4/samples/example2/._muparser32.dll
muparser_v2_2_4/samples/example2/muparser32.dll
muparser_v2_2_4/samples/example2/._muparser32.lib
muparser_v2_2_4/samples/example2/muparser32.lib
muparser_v2_2_4/samples/example2/._muparser64.dll
muparser_v2_2_4/samples/example2/muparser64.dll
muparser_v2_2_4/samples/example2/._muparser64.lib
muparser_v2_2_4/samples/example2/muparser64.lib
muparser_v2_2_4/samples/example2/._muparserd32.dll
muparser_v2_2_4/samples/example2/muparserd32.dll
muparser_v2_2_4/samples/example2/._muparserd32.lib
muparser_v2_2_4/samples/example2/muparserd32.lib
muparser_v2_2_4/samples/example2/._muparserd64.dll
muparser_v2_2_4/samples/example2/muparserd64.dll
muparser_v2_2_4/samples/example2/._muparserd64.lib
muparser_v2_2_4/samples/example2/muparserd64.lib
muparser_v2_2_4/samples/example2/._Readme.txt
muparser_v2_2_4/samples/example2/Readme.txt
muparser_v2_2_4/samples/example1/._example1.cpp
muparser_v2_2_4/samples/example1/example1.cpp
muparser_v2_2_4/._src
muparser_v2_2_4/src/
muparser_v2_2_4/src/._muParser.cpp
muparser_v2_2_4/src/muParser.cpp
muparser_v2_2_4/src/._muParserBase.cpp
muparser_v2_2_4/src/muParserBase.cpp
muparser_v2_2_4/src/._muParserBytecode.cpp
muparser_v2_2_4/src/muParserBytecode.cpp
muparser_v2_2_4/src/._muParserCallback.cpp
muparser_v2_2_4/src/muParserCallback.cpp
muparser_v2_2_4/src/._muParserDLL.cpp
muparser_v2_2_4/src/muParserDLL.cpp
muparser_v2_2_4/src/._muParserError.cpp
muparser_v2_2_4/src/muParserError.cpp
muparser_v2_2_4/src/._muParserInt.cpp
muparser_v2_2_4/src/muParserInt.cpp
muparser_v2_2_4/src/._muParserTest.cpp
muparser_v2_2_4/src/muParserTest.cpp
muparser_v2_2_4/src/._muParserTokenReader.cpp
muparser_v2_2_4/src/muParserTokenReader.cpp
Patch #0 (bionetgen-fix_linker.patch):
+ echo 'Patch #0 (bionetgen-fix_linker.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0
patching file bng2/Network3/CMakeLists.txt
Patch #1 (bionetgen-fix_cmake_minimum.patch):
+ echo 'Patch #1 (bionetgen-fix_cmake_minimum.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0
patching file bng2/Network3/CMakeLists.txt
patching file bng2/Network3/cvode-2.6.0/CMakeLists.txt
Patch #2 (bionetgen-cmake-c99.patch):
+ echo 'Patch #2 (bionetgen-cmake-c99.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .c99 --fuzz=0
patching file bng2/Network3/cvode-2.6.0/config/SundialsFortran.cmake
+ rm -f bng2/libsource/cvode-2.6.0.tar.gz bng2/libsource/muparser_v2_2_4.tar.gz
+ popd
~/build/BUILD/bionetgen-2.8.4
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.b5X3wS
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
~/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 ~/build/BUILD/bionetgen-2.8.4
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bionetgen-2.8.4
+ pushd bionetgen-BioNetGen-2.8.4/bng2/Network3
+ cd muparser_v2_2_4
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./build/autoconf/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./build/autoconf/config.sub
++ basename ./build/autoconf/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./build/autoconf/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './build/autoconf/config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./build/autoconf/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./build/autoconf/config.guess
++ basename ./build/autoconf/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./build/autoconf/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './build/autoconf/config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
+ ./configure --build=i686-redhat-linux-gnu --host=i686-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared=no --enable-static=yes --enable-samples=no
configure: WARNING: unrecognized options: --enable-static
checking build system type... i686-redhat-linux-gnu
checking host system type... i686-redhat-linux-gnu
checking target system type... i686-redhat-linux-gnu
checking for gawk... gawk
checking for a BSD-compatible install... /usr/bin/install -c
checking whether ln -s works... yes
checking for i686-redhat-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking for i686-redhat-linux-gnu-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking for the --enable-debug option... no
checking for the --enable-shared option... no
checking for the --enable-samples option... no
checking whether we are using the Intel C compiler... no
checking whether we are using the Intel C++ compiler... no
checking whether we are using the Sun C++ compiler... no
checking for i686-redhat-linux-gnu-ranlib... ranlib
checking whether ln -s works... yes
checking whether make sets $(MAKE)... yes
checking for i686-redhat-linux-gnu-ar... no
checking for ar... ar
checking for i686-redhat-linux-gnu-strip... no
checking for strip... strip
checking for i686-redhat-linux-gnu-nm... no
checking for nm... nm
checking for command to install directories... /usr/bin/install -c -d
checking if make is GNU make... egrep: warning: egrep is obsolescent; using grep -E
yes
checking for dependency tracking method... disabled
configure: creating ./config.status
config.status: creating Makefile
config.status: creating build/autoconf/muparser.pc
configure: WARNING: unrecognized options: --enable-static
----------------------------------------------------------------
Configuration for muparser 2.2.4 successfully completed.
Summary of main configuration settings for muparser:
- STATIC mode
- RELEASE build
- SAMPLES disabled
Now, just run make.
----------------------------------------------------------------
+ /usr/bin/make -O -j2 V=1 VERBOSE=1
g++ -c -o muParser_lib_muParser.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ./src/muParser.cpp
In file included from ./include/muParserStack.h:35,
from ./include/muParserBase.h:39,
from ./include/muParser.h:32,
from ./src/muParser.cpp:26:
./include/muParserToken.h:72:12: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | std::auto_ptr<ParserCallback> m_pCallback;
| ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
from ./include/muParserBase.h:33:
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
./include/muParserBase.h:291:10: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
291 | std::auto_ptr<token_reader_type> m_pTokenReader; ///< Managed pointer to the token reader object.
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -c -o muParser_lib_muParserBytecode.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ./src/muParserBytecode.cpp
In file included from ./include/muParserBytecode.h:35,
from ./src/muParserBytecode.cpp:26:
./include/muParserToken.h:72:12: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | std::auto_ptr<ParserCallback> m_pCallback;
| ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
from ./include/muParserError.h:34,
from ./include/muParserBytecode.h:34:
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
./src/muParserBytecode.cpp: In member function 'void mu::ParserByteCode::AddOp(mu::ECmdCode)':
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmLE' not handled in switch [-Wswitch]
213 | switch(a_Oprt)
| ^
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmGE' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmNEQ' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmEQ' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmLT' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmGT' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmLAND' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmLOR' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmASSIGN' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmBO' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmBC' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmIF' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmELSE' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmENDIF' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmARG_SEP' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmVAR' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmVAL' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmVARPOW2' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmVARPOW3' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmVARPOW4' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmVARMUL' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmPOW2' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmFUNC' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmFUNC_STR' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmFUNC_BULK' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmSTRING' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmOPRT_BIN' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmOPRT_POSTFIX' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmOPRT_INFIX' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmEND' not handled in switch [-Wswitch]
./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmUNKNOWN' not handled in switch [-Wswitch]
g++ -c -o muParser_lib_muParserCallback.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ./src/muParserCallback.cpp
g++ -c -o muParser_lib_muParserDLL.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ./src/muParserDLL.cpp
g++ -c -o muParser_lib_muParserError.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ./src/muParserError.cpp
g++ -c -o muParser_lib_muParserBase.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ./src/muParserBase.cpp
In file included from ./include/muParserStack.h:35,
from ./include/muParserBase.h:39,
from ./src/muParserBase.cpp:26:
./include/muParserToken.h:72:12: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | std::auto_ptr<ParserCallback> m_pCallback;
| ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
from ./include/muParserBase.h:33:
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
./include/muParserBase.h:291:10: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
291 | std::auto_ptr<token_reader_type> m_pTokenReader; ///< Managed pointer to the token reader object.
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
./src/muParserBase.cpp: In member function 'void mu::ParserBase::ApplyFunc(mu::ParserStack<mu::ParserToken<double, std::__cxx11::basic_string<char> > >&, mu::ParserStack<mu::ParserToken<double, std::__cxx11::basic_string<char> > >&, int) const':
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmLE' not handled in switch [-Wswitch]
838 | switch(funTok.GetCode())
| ^
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmGE' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmNEQ' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmEQ' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmLT' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmGT' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmADD' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmSUB' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmMUL' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmDIV' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmPOW' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmLAND' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmLOR' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmASSIGN' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmBO' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmBC' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmIF' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmELSE' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmENDIF' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmARG_SEP' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmVAR' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmVAL' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmVARPOW2' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmVARPOW3' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmVARPOW4' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmVARMUL' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmPOW2' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmSTRING' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmEND' not handled in switch [-Wswitch]
./src/muParserBase.cpp:838:11: warning: enumeration value 'cmUNKNOWN' not handled in switch [-Wswitch]
g++ -c -o muParser_lib_muParserInt.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ./src/muParserInt.cpp
In file included from ./include/muParserStack.h:35,
from ./include/muParserBase.h:39,
from ./include/muParserInt.h:29,
from ./src/muParserInt.cpp:26:
./include/muParserToken.h:72:12: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | std::auto_ptr<ParserCallback> m_pCallback;
| ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
from ./include/muParserBase.h:33:
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
./include/muParserBase.h:291:10: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
291 | std::auto_ptr<token_reader_type> m_pTokenReader; ///< Managed pointer to the token reader object.
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -c -o muParser_lib_muParserTokenReader.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ./src/muParserTokenReader.cpp
In file included from ./include/muParserTokenReader.h:39,
from ./src/muParserTokenReader.cpp:32:
./include/muParserToken.h:72:12: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | std::auto_ptr<ParserCallback> m_pCallback;
| ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
from ./include/muParserTokenReader.h:34:
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from ./src/muParserTokenReader.cpp:33:
./include/muParserBase.h:291:10: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
291 | std::auto_ptr<token_reader_type> m_pTokenReader; ///< Managed pointer to the token reader object.
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
./src/muParserTokenReader.cpp: In member function 'mu::ParserTokenReader* mu::ParserTokenReader::Clone(mu::ParserBase*) const':
./src/muParserTokenReader.cpp:150:10: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
150 | std::auto_ptr<ParserTokenReader> ptr(new ParserTokenReader(*this));
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -c -o muParser_lib_muParserTest.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ./src/muParserTest.cpp
./src/muParserTest.cpp:1387: warning: ignoring '#pragma warning ' [-Wunknown-pragmas]
1387 | #pragma warning(push)
|
./src/muParserTest.cpp:1388: warning: ignoring '#pragma warning ' [-Wunknown-pragmas]
1388 | #pragma warning(disable:4127)
|
./src/muParserTest.cpp:1390: warning: ignoring '#pragma warning ' [-Wunknown-pragmas]
1390 | #pragma warning(pop)
|
In file included from ./include/muParserStack.h:35,
from ./include/muParserBase.h:39,
from ./include/muParser.h:32,
from ./include/muParserTest.h:32,
from ./src/muParserTest.cpp:26:
./include/muParserToken.h:72:12: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | std::auto_ptr<ParserCallback> m_pCallback;
| ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
from ./include/muParserBase.h:33:
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
./include/muParserBase.h:291:10: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
291 | std::auto_ptr<token_reader_type> m_pTokenReader; ///< Managed pointer to the token reader object.
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
./src/muParserTest.cpp: In member function 'int mu::Test::ParserTester::EqnTest(const mu::string_type&, double, bool)':
./src/muParserTest.cpp:1261:14: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
1261 | std::auto_ptr<Parser> p1;
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
rm -f lib/libmuparser.a
ar rcu lib/libmuparser.a muParser_lib_muParser.o muParser_lib_muParserBase.o muParser_lib_muParserBytecode.o muParser_lib_muParserCallback.o muParser_lib_muParserDLL.o muParser_lib_muParserError.o muParser_lib_muParserInt.o muParser_lib_muParserTest.o muParser_lib_muParserTokenReader.o
ranlib lib/libmuparser.a
+ cd ../
+ make -j1 -C src/util/mathutils
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/mathutils'
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o allocate.o allocate.c
allocate.c: In function 'ALLOC_MATRIX':
allocate.c:9:20: warning: unused variable 'j' [-Wunused-variable]
9 | register int i,j;
| ^
allocate.c: In function 'IALLOC_MATRIX':
allocate.c:100:20: warning: unused variable 'j' [-Wunused-variable]
100 | register int i,j;
| ^
allocate.c: In function 'ZALLOC_MATRIX':
allocate.c:191:20: warning: unused variable 'j' [-Wunused-variable]
191 | register int i,j;
| ^
In file included from allocate.c:1:
mathutils.h: At top level:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a allocate.o
ar: creating libmathutils.a
a - allocate.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o cabs.o cabs.c
In file included from cabs.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a cabs.o
a - cabs.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o cadd.o cadd.c
In file included from cadd.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a cadd.o
a - cadd.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o cconj.o cconj.c
In file included from cconj.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a cconj.o
a - cconj.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o cmult.o cmult.c
In file included from cmult.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a cmult.o
a - cmult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o complex_zero.o complex_zero.c
In file included from complex_zero.c:2:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a complex_zero.o
a - complex_zero.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o copy_vector.o copy_vector.c
In file included from copy_vector.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a copy_vector.o
a - copy_vector.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o cprob.o cprob.c
In file included from cprob.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a cprob.o
a - cprob.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o csub.o csub.c
In file included from csub.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a csub.o
a - csub.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o dotp.o dotp.c
In file included from dotp.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a dotp.o
a - dotp.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o eigensystem.o eigensystem.c
In file included from eigensystem.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a eigensystem.o
a - eigensystem.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o expi.o expi.c
In file included from expi.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a expi.o
a - expi.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o gram_schmidt.o gram_schmidt.c
In file included from gram_schmidt.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a gram_schmidt.o
a - gram_schmidt.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o herm_matrix_mult.o herm_matrix_mult.c
In file included from herm_matrix_mult.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a herm_matrix_mult.o
a - herm_matrix_mult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o herm_matrix_vector_mult.o herm_matrix_vector_mult.c
In file included from herm_matrix_vector_mult.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a herm_matrix_vector_mult.o
a - herm_matrix_vector_mult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o icmult.o icmult.c
In file included from icmult.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a icmult.o
a - icmult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o init.o init.c
In file included from init.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a init.o
a - init.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o integration.o integration.c
In file included from integration.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a integration.o
a - integration.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o linsolve.o linsolve.c
linsolve.c: In function 'LINSOLVE':
linsolve.c:16:20: warning: unused variable 'j' [-Wunused-variable]
16 | register int i,j;
| ^
linsolve.c:16:18: warning: unused variable 'i' [-Wunused-variable]
16 | register int i,j;
| ^
In file included from linsolve.c:1:
mathutils.h: At top level:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a linsolve.o
a - linsolve.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o matherr.o matherr.c
In file included from matherr.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a matherr.o
a - matherr.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o matrix_add.o matrix_add.c
In file included from matrix_add.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a matrix_add.o
a - matrix_add.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o matrix_elt.o matrix_elt.c
In file included from matrix_elt.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a matrix_elt.o
a - matrix_elt.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o matrix_mult.o matrix_mult.c
In file included from matrix_mult.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a matrix_mult.o
a - matrix_mult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o matrix_sub.o matrix_sub.c
In file included from matrix_sub.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a matrix_sub.o
a - matrix_sub.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o matrix_transpose.o matrix_transpose.c
In file included from matrix_transpose.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a matrix_transpose.o
a - matrix_transpose.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o matrix_vector_mult.o matrix_vector_mult.c
In file included from matrix_vector_mult.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a matrix_vector_mult.o
a - matrix_vector_mult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o matrixexp.o matrixexp.c
In file included from matrixexp.c:5:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a matrixexp.o
a - matrixexp.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o minimum.o minimum.c
minimum.c: In function 'MIN_BRACKET':
minimum.c:17:26: warning: unused variable 'dum' [-Wunused-variable]
17 | double ulim,u,r,q,fu,dum;
| ^~~
In file included from minimum.c:3:
mathutils.h: At top level:
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a minimum.o
a - minimum.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o norm.o norm.c
norm.c: In function 'NORM':
norm.c:14:12: warning: unused variable 'norm' [-Wunused-variable]
14 | double norm;
| ^~~~
In file included from norm.c:1:
mathutils.h: At top level:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a norm.o
a - norm.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o normsq.o normsq.c
normsq.c: In function 'NORMSQ':
normsq.c:13:12: warning: unused variable 'norm' [-Wunused-variable]
13 | double norm;
| ^~~~
In file included from normsq.c:1:
mathutils.h: At top level:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a normsq.o
a - normsq.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o project.o project.c
In file included from project.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a project.o
a - project.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o random.o random.c
In file included from random.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a random.o
a - random.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o rcmult.o rcmult.c
In file included from rcmult.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a rcmult.o
a - rcmult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o rect_transpose.o rect_transpose.c
rect_transpose.c: In function 'RECT_TRANSPOSE':
rect_transpose.c:5:26: warning: unused variable 'Atptr' [-Wunused-variable]
5 | double **At, *Aptr, *Atptr;
| ^~~~~
rect_transpose.c:5:19: warning: unused variable 'Aptr' [-Wunused-variable]
5 | double **At, *Aptr, *Atptr;
| ^~~~
In file included from rect_transpose.c:1:
mathutils.h: At top level:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a rect_transpose.o
a - rect_transpose.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o roots.o roots.c
In file included from roots.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
roots.c: In function 'ROOT_FIND':
roots.c:55:13: warning: 'e' may be used uninitialized [-Wmaybe-uninitialized]
55 | if (fabs(e) >= tol1 && fabs(fa) > fabs(fb)) {
| ^~~~~~~
roots.c:32:29: note: 'e' was declared here
32 | double a=x1,b=x2,c=x2,d,e,min1,min2;
| ^
ar rv libmathutils.a roots.o
a - roots.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o runge-kutta.o runge-kutta.c
In file included from runge-kutta.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a runge-kutta.o
a - runge-kutta.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o scale_vector.o scale_vector.c
In file included from scale_vector.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a scale_vector.o
a - scale_vector.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o splines.o splines.c
In file included from splines.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a splines.o
a - splines.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o sum_vector.o sum_vector.c
In file included from sum_vector.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a sum_vector.o
a - sum_vector.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o svd.o svd.c
In file included from svd.c:2:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
ar rv libmathutils.a svd.o
a - svd.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o sym_linsolve.o sym_linsolve.c
In file included from sym_linsolve.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a sym_linsolve.o
a - sym_linsolve.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o sym_matrix_mult.o sym_matrix_mult.c
In file included from sym_matrix_mult.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a sym_matrix_mult.o
a - sym_matrix_mult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o sym_matrix_vector_mult.o sym_matrix_vector_mult.c
In file included from sym_matrix_vector_mult.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a sym_matrix_vector_mult.o
a - sym_matrix_vector_mult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o sympos_linsolve.o sympos_linsolve.c
In file included from sympos_linsolve.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a sympos_linsolve.o
a - sympos_linsolve.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o vector_add.o vector_add.c
In file included from vector_add.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a vector_add.o
a - vector_add.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o vector_dist.o vector_dist.c
In file included from vector_dist.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a vector_dist.o
a - vector_dist.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o zcopy_vector.o zcopy_vector.c
In file included from zcopy_vector.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a zcopy_vector.o
a - zcopy_vector.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o zdotc.o zdotc.c
In file included from zdotc.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a zdotc.o
a - zdotc.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o zdotu.o zdotu.c
In file included from zdotu.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a zdotu.o
a - zdotu.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o zmatrix_mult.o zmatrix_mult.c
In file included from zmatrix_mult.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a zmatrix_mult.o
a - zmatrix_mult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o zmatrix_transpose.o zmatrix_transpose.c
In file included from zmatrix_transpose.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a zmatrix_transpose.o
a - zmatrix_transpose.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o zmatrix_vector_mult.o zmatrix_vector_mult.c
In file included from zmatrix_vector_mult.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a zmatrix_vector_mult.o
a - zmatrix_vector_mult.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o znorm.o znorm.c
In file included from znorm.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a znorm.o
a - znorm.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o znormsq.o znormsq.c
In file included from znormsq.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a znormsq.o
a - znormsq.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o zrscale_vector.o zrscale_vector.c
In file included from zrscale_vector.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a zrscale_vector.o
a - zrscale_vector.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o zscale_vector.o zscale_vector.c
In file included from zscale_vector.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a zscale_vector.o
a - zscale_vector.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o zsum_vector.o zsum_vector.c
In file included from zsum_vector.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a zsum_vector.o
a - zsum_vector.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o zsym_linsolve.o zsym_linsolve.c
In file included from zsym_linsolve.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a zsym_linsolve.o
a - zsym_linsolve.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o zmatrix_add.o zmatrix_add.c
In file included from zmatrix_add.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a zmatrix_add.o
a - zmatrix_add.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o zmatrix_sub.o zmatrix_sub.c
In file included from zmatrix_sub.c:1:
mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
ar rv libmathutils.a zmatrix_sub.o
a - zmatrix_sub.o
ranlib ./libmathutils.a
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/mathutils'
++ echo '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
++ sed -e s/-Werror=format-security/-Wno-error=format-security/g
+ SETOPT_FLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ mkdir -p cvode-2.6.0/build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -S . -B cvode-2.6.0/build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -S cvode-2.6.0 -B cvode-2.6.0/build '-DCMAKE_MODULE_LINKER_FLAGS:STRING=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' -DCMAKE_INSTALL_PREFIX=/usr -DEXAMPLES_ENABLE=OFF -DEXAMPLES_INSTALL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DBUILD_STATIC_LIBS:BOOL=ON -DMPI_ENABLE:BOOL=OFF -DFCMIX_ENABLE:BOOL=ON
CMake Warning:
Ignoring extra path from command line:
"/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3"
-- The C compiler identification is GNU 13.0.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- The Fortran compiler identification is GNU 13.0.0
-- Searching for a Fortran compiler... /usr/bin/gfortran
-- Trying to compile and link a simple Fortran program... OK
CMake Warning (dev) in /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt:
No cmake_minimum_required command is present. A line of code such as
cmake_minimum_required(VERSION 3.25)
should be added at the top of the file. The version specified may be lower
if you wish to support older CMake versions for this project. For more
information run "cmake --help-policy CMP0000".
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) in /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt:
No cmake_minimum_required command is present. A line of code such as
cmake_minimum_required(VERSION 3.25)
should be added at the top of the file. The version specified may be lower
if you wish to support older CMake versions for this project. For more
information run "cmake --help-policy CMP0000".
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) in /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt:
No cmake_minimum_required command is present. A line of code such as
cmake_minimum_required(VERSION 3.25)
should be added at the top of the file. The version specified may be lower
if you wish to support older CMake versions for this project. For more
information run "cmake --help-policy CMP0000".
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) in /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt:
No cmake_minimum_required command is present. A line of code such as
cmake_minimum_required(VERSION 3.25)
should be added at the top of the file. The version specified may be lower
if you wish to support older CMake versions for this project. For more
information run "cmake --help-policy CMP0000".
This warning is for project developers. Use -Wno-dev to suppress it.
-- Determining Fortran name-mangling scheme... OK
-- Added NVECTOR_SERIAL module
-- Added CVODE module
-- Added CVODE FCMIX module
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_CXX_FLAGS_RELEASE
CMAKE_INSTALL_DO_STRIP
CMAKE_MODULE_LINKER_FLAGS
INCLUDE_INSTALL_DIR
LIB_INSTALL_DIR
SHARE_INSTALL_PREFIX
SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build
+ /usr/bin/cmake --build cvode-2.6.0/build -j2 --verbose
/usr/bin/cmake -S/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0 -B/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/CMakeFiles /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build//CMakeFiles/progress.marks
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cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0 /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser/. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/nvector_serial.c.o -MF CMakeFiles/sundials_nvecserial_static.dir/nvector_serial.c.o.d -o CMakeFiles/sundials_nvecserial_static.dir/nvector_serial.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser/nvector_serial.c
[ 5%] Building C object src/nvec_ser/CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser/. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/nvec_ser/CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o -MF CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o.d -o CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser/fnvector_serial.c
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cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/cmake -P CMakeFiles/sundials_fnvecserial_static.dir/cmake_clean_target.cmake
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/usr/bin/ar qc libsundials_fnvecserial.a CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o
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cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0 /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/CMakeFiles/sundials_cvode_static.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode.c
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cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser/. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/__/sundials/sundials_math.c.o -MF CMakeFiles/sundials_nvecserial_static.dir/__/sundials/sundials_math.c.o.d -o CMakeFiles/sundials_nvecserial_static.dir/__/sundials/sundials_math.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_math.c
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cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/cmake -P CMakeFiles/sundials_nvecserial_static.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/cmake -E cmake_link_script CMakeFiles/sundials_nvecserial_static.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0 /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvband.c
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvband.c: In function 'fcvbandsetjac_':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvband.c:48:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable]
48 | CVodeMem cv_mem;
| ^~~~~~
[ 21%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvbbd.c
[ 24%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvbp.c
[ 27%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvdense.c
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvdense.c: In function 'fcvdensesetjac_':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvdense.c:48:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable]
48 | CVodeMem cv_mem;
| ^~~~~~
[ 29%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvewt.c
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvewt.c: In function 'fcvewtset_':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvewt.c:46:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable]
46 | CVodeMem cv_mem;
| ^~~~~~
[ 32%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c: In function 'fcvspilssetjac_':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c:52:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable]
52 | CVodeMem cv_mem;
| ^~~~~~
[ 35%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvode.c
[ 37%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvpreco.c
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvpreco.c: In function 'fcvspilssetprec_':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvpreco.c:59:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable]
59 | CVodeMem cv_mem;
| ^~~~~~
[ 40%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvroot.c
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvroot.c: In function 'fcvrootinit_':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvroot.c:44:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable]
44 | CVodeMem cv_mem;
| ^~~~~~
[ 43%] Linking C static library libsundials_fcvode.a
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/cmake -P CMakeFiles/sundials_fcvode_static.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sundials_fcvode_static.dir/link.txt --verbose=1
/usr/bin/ar qc libsundials_fcvode.a CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o
/usr/bin/ranlib libsundials_fcvode.a
gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build'
[ 43%] Built target sundials_fcvode_static
[ 45%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_io.c
[ 48%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_direct.c
[ 51%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_band.c
[ 54%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_dense.c
[ 56%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_diag.c
[ 59%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_spils.c
[ 62%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_spbcgs.c
[ 64%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spgmr.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spgmr.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_spgmr.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_spgmr.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_spgmr.c
[ 67%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_sptfqmr.c
[ 70%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_bandpre.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_bandpre.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_bandpre.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_bandpre.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_bandpre.c
[ 72%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_bbdpre.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_bbdpre.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_bbdpre.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_bbdpre.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_bbdpre.c
[ 75%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_nvector.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_nvector.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_nvector.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_nvector.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_nvector.c
[ 78%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_math.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_math.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_math.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_math.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_math.c
[ 81%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_direct.c
[ 83%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_band.c
[ 86%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_dense.c
[ 89%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_iterative.c
[ 91%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_spbcgs.c
[ 94%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_spgmr.c
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_spgmr.c: In function 'SpgmrFree':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_spgmr.c:439:29: warning: variable 'yg' set but not used [-Wunused-but-set-variable]
439 | realtype **Hes, *givens, *yg;
| ^~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_spgmr.c:439:20: warning: variable 'givens' set but not used [-Wunused-but-set-variable]
439 | realtype **Hes, *givens, *yg;
| ^~~~~~
[ 97%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_sptfqmr.c
[100%] Linking C static library libsundials_cvode.a
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/cmake -P CMakeFiles/sundials_cvode_static.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/cmake -E cmake_link_script CMakeFiles/sundials_cvode_static.dir/link.txt --verbose=1
/usr/bin/ar qc libsundials_cvode.a CMakeFiles/sundials_cvode_static.dir/cvode.c.o CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o CMakeFiles/sundials_cvode_static.dir/cvode_spgmr.c.o CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o CMakeFiles/sundials_cvode_static.dir/cvode_bandpre.c.o CMakeFiles/sundials_cvode_static.dir/cvode_bbdpre.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_nvector.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_math.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o
/usr/bin/ranlib libsundials_cvode.a
gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build'
[100%] Built target sundials_cvode_static
gmake[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/CMakeFiles 0
++ echo '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
++ sed -e s/-Werror=format-security/-Wno-error=format-security/g
+ SETOPT_FLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../muparser_v2_2_4/include'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../muparser_v2_2_4/include'
+ export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser'
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser'
+ mkdir -p build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../muparser_v2_2_4/include'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -S . -B build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DBUILD_SHARED_LIBS:BOOL=OFF -DBUILD_STATIC_LIBS:BOOL=ON
-- The C compiler identification is GNU 13.0.0
-- The CXX compiler identification is GNU 13.0.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
BUILD_SHARED_LIBS
BUILD_STATIC_LIBS
CMAKE_CXX_FLAGS_RELEASE
CMAKE_C_FLAGS_RELEASE
CMAKE_Fortran_FLAGS_RELEASE
CMAKE_INSTALL_DO_STRIP
CMAKE_SKIP_INSTALL_RPATH
INCLUDE_INSTALL_DIR
LIB_INSTALL_DIR
SHARE_INSTALL_PREFIX
SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build
+ /usr/bin/cmake --build build -j2 --verbose
/usr/bin/cmake -S/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -B/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build/CMakeFiles /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build//CMakeFiles/progress.marks
/usr/bin/gmake -f CMakeFiles/Makefile2 all
gmake[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build'
/usr/bin/gmake -f CMakeFiles/run_network.dir/build.make CMakeFiles/run_network.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build'
cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build/CMakeFiles/run_network.dir/DependInfo.cmake --color=
gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build'
/usr/bin/gmake -f CMakeFiles/run_network.dir/build.make CMakeFiles/run_network.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build'
[ 3%] Building CXX object CMakeFiles/run_network.dir/src/network3.cpp.o
[ 3%] Building CXX object CMakeFiles/run_network.dir/src/network.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/network3.cpp.o -MF CMakeFiles/run_network.dir/src/network3.cpp.o.d -o CMakeFiles/run_network.dir/src/network3.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network3.cpp
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/network.cpp.o -MF CMakeFiles/run_network.dir/src/network.cpp.o.d -o CMakeFiles/run_network.dir/src/network.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp
In file included from ../muparser_v2_2_4/include/muParserStack.h:35,
from ../muparser_v2_2_4/include/muParserBase.h:39,
from ../muparser_v2_2_4/include/muParser.h:32,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:36,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network3.hh:12,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network3.cpp:8:
../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | std::auto_ptr<ParserCallback> m_pCallback;
| ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
from ../muparser_v2_2_4/include/muParserBase.h:33:
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from ../muparser_v2_2_4/include/muParserStack.h:35,
from ../muparser_v2_2_4/include/muParserBase.h:39,
from ../muparser_v2_2_4/include/muParser.h:32,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:36,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:54:
../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | std::auto_ptr<ParserCallback> m_pCallback;
| ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
from ../muparser_v2_2_4/include/muParserBase.h:33:
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
291 | std::auto_ptr<token_reader_type> m_pTokenReader; ///< Managed pointer to the token reader object.
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
291 | std::auto_ptr<token_reader_type> m_pTokenReader; ///< Managed pointer to the token reader object.
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void read_functions_array(const char*, Elt_array*&, std::map<std::__cxx11::basic_string<char>, double*>&, std::map<std::__cxx11::basic_string<char>, int>, std::map<std::__cxx11::basic_string<char>, int>, double*)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:440:13: warning: variable 'index' set but not used [-Wunused-but-set-variable]
440 | int index;
| ^~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'Rxn* new_Rxn(int, int, int, int*, int*, int, int, int*, double, Elt_array*)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:1132:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
1132 | register int i;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int* read_indices_Rxn(char*, int*, Elt_array*, int)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:1543:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
1543 | register int i;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void print_Rxn_array(FILE*, Rxn_array*, Elt_array*, Elt_array*)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:1925:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
1925 | register int i;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:1927:15: warning: variable 'sarr' set but not used [-Wunused-but-set-variable]
1927 | Elt **sarr, **rarr;
| ^~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int n_species_active()':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2068:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
2068 | register int i;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int get_conc_network(double*)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2088:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
2088 | register int i;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int set_conc_network(double*)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2110:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
2110 | register int i, n_species;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2110:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
2110 | register int i, n_species;
| ^~~~~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int rxn_rates_network(double*, int)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2729:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
2729 | register int i;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void derivs_network(double, double*, double*)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2782:15: warning: unused variable 'rarray' [-Wunused-variable]
2782 | Rxn **rarray, *rxn;
| ^~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2783:15: warning: variable 'rates' set but not used [-Wunused-but-set-variable]
2783 | Elt** rates;
| ^~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int print_derivs_network(FILE*)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2957:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
2957 | register int i/*,j*/;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int print_derivs_species_network(FILE*)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2990:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
2990 | register int i/*,j*/;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int print_rates_network(FILE*, int)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3019:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3019 | register int i;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void sparse_jac_matlab(FILE*)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3198:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3198 | register int i, j, r, n;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3198:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3198 | register int i, j, r, n;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3198:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3198 | register int i, j, r, n;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3198:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3198 | register int i, j, r, n;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3204:15: warning: variable 'rates' set but not used [-Wunused-but-set-variable]
3204 | Elt** rates;
| ^~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void CVjac_network(long int, DlsMat, realtype, N_Vector, N_Vector, void*, N_Vector, N_Vector, N_Vector)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3272:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3272 | register int i, j, r, n;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3272:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3272 | register int i, j, r, n;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3272:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3272 | register int i, j, r, n;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3272:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3272 | register int i, j, r, n;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3277:15: warning: variable 'rates' set but not used [-Wunused-but-set-variable]
3277 | Elt** rates;
| ^~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int CVjtimes(N_Vector, N_Vector, realtype, N_Vector, N_Vector, void*, N_Vector)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3333:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3333 | register int i, j, r, n;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3333:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3333 | register int i, j, r, n;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3333:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3333 | register int i, j, r, n;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3333:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3333 | register int i, j, r, n;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3338:15: warning: variable 'rates' set but not used [-Wunused-but-set-variable]
3338 | Elt** rates;
| ^~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int print_flux_network(FILE*, double, int)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4037:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
4037 | register int i;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void print_rxn_update_list(FILE*)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4376:29: warning: variable 'rxn' set but not used [-Wunused-but-set-variable]
4376 | Rxn /* **rarray,*/ *rxn;
| ^~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void print_as_reactant_list(FILE*)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4410:13: warning: variable 'offset' set but not used [-Wunused-but-set-variable]
4410 | int offset;
| ^~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int create_update_lists()':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4757:37: warning: unused variable 'pp' [-Wunused-variable]
4757 | int pp = GSP.func_param_affect.at(ff)-1;
| ^~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int init_gillespie_direct_network(int, int)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4837:15: warning: unused variable 'rarray' [-Wunused-variable]
4837 | Rxn** rarray;
| ^~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int init_adaptive_scaling_network(int, int, double, bool)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4905:15: warning: unused variable 'rarray' [-Wunused-variable]
4905 | Rxn** rarray;
| ^~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int update_gillespie_direct_network(int, int)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4978:13: warning: unused variable 'ip' [-Wunused-variable]
4978 | int ip, ir, is, irxn;
| ^~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4978:17: warning: unused variable 'ir' [-Wunused-variable]
4978 | int ip, ir, is, irxn;
| ^~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4978:21: warning: unused variable 'is' [-Wunused-variable]
4978 | int ip, ir, is, irxn;
| ^~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4978:25: warning: unused variable 'irxn' [-Wunused-variable]
4978 | int ip, ir, is, irxn;
| ^~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4980:14: warning: unused variable 'rxn_dep' [-Wunused-variable]
4980 | int *rxn_dep/*, *rxn_dep2, *rxn_dep3*/; /* boolean arrays to keep track of dependent
| ^~~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4983:17: warning: unused variable 'arl' [-Wunused-variable]
4983 | iarray *arl, *apl, *rul; /* species and reaction update lists */
| ^~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4983:23: warning: unused variable 'apl' [-Wunused-variable]
4983 | iarray *arl, *apl, *rul; /* species and reaction update lists */
| ^~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4983:29: warning: unused variable 'rul' [-Wunused-variable]
4983 | iarray *arl, *apl, *rul; /* species and reaction update lists */
| ^~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4984:13: warning: unused variable 'offset' [-Wunused-variable]
4984 | int offset, r_index, p_index;
| ^~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4984:21: warning: unused variable 'r_index' [-Wunused-variable]
4984 | int offset, r_index, p_index;
| ^~~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4984:30: warning: unused variable 'p_index' [-Wunused-variable]
4984 | int offset, r_index, p_index;
| ^~~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4985:15: warning: unused variable 'rarray' [-Wunused-variable]
4985 | Rxn **rarray, *rxn;
| ^~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4985:24: warning: unused variable 'rxn' [-Wunused-variable]
4985 | Rxn **rarray, *rxn;
| ^~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int update_adaptive_scaling_network(int, int)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5160:13: warning: unused variable 'ip' [-Wunused-variable]
5160 | int ip, ir, is, irxn;
| ^~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5160:17: warning: unused variable 'ir' [-Wunused-variable]
5160 | int ip, ir, is, irxn;
| ^~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5160:21: warning: unused variable 'is' [-Wunused-variable]
5160 | int ip, ir, is, irxn;
| ^~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5160:25: warning: unused variable 'irxn' [-Wunused-variable]
5160 | int ip, ir, is, irxn;
| ^~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5162:14: warning: unused variable 'rxn_dep' [-Wunused-variable]
5162 | int *rxn_dep/*, *rxn_dep2, *rxn_dep3*/; /* boolean arrays to keep track of dependent
| ^~~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5165:17: warning: unused variable 'arl' [-Wunused-variable]
5165 | iarray *arl, *apl, *rul; /* species and reaction update lists */
| ^~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5165:23: warning: unused variable 'apl' [-Wunused-variable]
5165 | iarray *arl, *apl, *rul; /* species and reaction update lists */
| ^~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5165:29: warning: unused variable 'rul' [-Wunused-variable]
5165 | iarray *arl, *apl, *rul; /* species and reaction update lists */
| ^~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5166:13: warning: unused variable 'offset' [-Wunused-variable]
5166 | int offset, r_index, p_index;
| ^~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5166:21: warning: unused variable 'r_index' [-Wunused-variable]
5166 | int offset, r_index, p_index;
| ^~~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5166:30: warning: unused variable 'p_index' [-Wunused-variable]
5166 | int offset, r_index, p_index;
| ^~~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5167:15: warning: unused variable 'rarray' [-Wunused-variable]
5167 | Rxn **rarray, *rxn;
| ^~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5167:24: warning: unused variable 'rxn' [-Wunused-variable]
5167 | Rxn **rarray, *rxn;
| ^~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void update_rxn_rates(int)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5683:27: warning: variable 'c' set but not used [-Wunused-but-set-variable]
5683 | double *a, anew, *c;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void update_rxn_rates_has(int, double, bool)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5747:27: warning: variable 'c' set but not used [-Wunused-but-set-variable]
5747 | double *a, anew, *c;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:262:23: warning: 'mu::value_type Mratio(mu::value_type, mu::value_type, mu::value_type)' defined but not used [-Wunused-function]
262 | static mu::value_type Mratio(mu::value_type a, mu::value_type b, mu::value_type z){
| ^~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:258:23: warning: 'mu::value_type If(mu::value_type, mu::value_type, mu::value_type)' defined but not used [-Wunused-function]
258 | static mu::value_type If(mu::value_type v1, mu::value_type v2, mu::value_type v3){
| ^~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: At global scope:
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3332:12: warning: 'int CVjtimes(N_Vector, N_Vector, realtype, N_Vector, N_Vector, void*, N_Vector)' defined but not used [-Wunused-function]
3332 | static int CVjtimes(N_Vector v, N_Vector Jv, realtype t, N_Vector y, N_Vector fy, void* jac_data, N_Vector tmp) {
| ^~~~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3270:13: warning: 'void CVjac_network(long int, DlsMat, realtype, N_Vector, N_Vector, void*, N_Vector, N_Vector, N_Vector)' defined but not used [-Wunused-function]
3270 | static void CVjac_network(long int N, DlsMat J, realtype t, N_Vector y, N_Vector fy, void* jac_data, N_Vector tmp1, N_Vector tmp2,
| ^~~~~~~~~~~~~
In file included from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:38:
../src/util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
../src/util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
../src/util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
../src/util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
../src/util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'rxn_rate_scaled(RXN*, double*, int, double&, double, bool) [clone .constprop.0]':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2703:22: warning: 'rate' may be used uninitialized [-Wmaybe-uninitialized]
2703 | if (discrete && rate < 0.0){
| ~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2328:16: note: 'rate' was declared here
2328 | double rate;
| ^~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'rxn_rate(RXN*, double*, int)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2303:22: warning: 'rate' may be used uninitialized [-Wmaybe-uninitialized]
2303 | if (discrete && rate < 0.0){
| ~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2126:16: note: 'rate' was declared here
2126 | double rate;
| ^~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'create_update_lists()':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4474:27: warning: 'rarray' may be used uninitialized [-Wmaybe-uninitialized]
4474 | if (!(rxn = rarray[i]))
| ~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4459:15: note: 'rarray' was declared here
4459 | Rxn **rarray, *rxn;
| ^~~~~~
[ 5%] Building CXX object CMakeFiles/run_network.dir/src/run_network.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/run_network.cpp.o -MF CMakeFiles/run_network.dir/src/run_network.cpp.o.d -o CMakeFiles/run_network.dir/src/run_network.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp
In file included from ../muparser_v2_2_4/include/muParserStack.h:35,
from ../muparser_v2_2_4/include/muParserBase.h:39,
from ../muparser_v2_2_4/include/muParser.h:32,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:36,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network3.hh:12,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:46:
../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | std::auto_ptr<ParserCallback> m_pCallback;
| ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
from ../muparser_v2_2_4/include/muParserBase.h:33:
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
291 | std::auto_ptr<token_reader_type> m_pTokenReader; ///< Managed pointer to the token reader object.
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp: In function 'int main(int, char**)':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:95:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
95 | register int i/*, j*/;
| ^
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:735:84: warning: variable 'n_deriv_calls_last' set but not used [-Wunused-but-set-variable]
735 | long int /*n_steps = 0, n_steps_last = 0,*/ n_rate_calls_last = 0, n_deriv_calls_last = 0;
| ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h: At global scope:
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:262:23: warning: 'mu::value_type Mratio(mu::value_type, mu::value_type, mu::value_type)' defined but not used [-Wunused-function]
262 | static mu::value_type Mratio(mu::value_type a, mu::value_type b, mu::value_type z){
| ^~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:258:23: warning: 'mu::value_type If(mu::value_type, mu::value_type, mu::value_type)' defined but not used [-Wunused-function]
258 | static mu::value_type If(mu::value_type v1, mu::value_type v2, mu::value_type v3){
| ^~
In file included from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:39:
../src/util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
../src/util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
../src/util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
../src/util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
../src/util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
../src/util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
../src/util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
[ 7%] Building CXX object CMakeFiles/run_network.dir/src/model/function.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/function.cpp.o -MF CMakeFiles/run_network.dir/src/model/function.cpp.o.d -o CMakeFiles/run_network.dir/src/model/function.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/function.cpp
In file included from ../muparser_v2_2_4/include/muParserStack.h:35,
from ../muparser_v2_2_4/include/muParserBase.h:39,
from ../muparser_v2_2_4/include/muParser.h:32,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/function.hh:12,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/function.cpp:8:
../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | std::auto_ptr<ParserCallback> m_pCallback;
| ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
from ../muparser_v2_2_4/include/muParserBase.h:33:
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
291 | std::auto_ptr<token_reader_type> m_pTokenReader; ///< Managed pointer to the token reader object.
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
[ 9%] Building CXX object CMakeFiles/run_network.dir/src/model/observable.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/observable.cpp.o -MF CMakeFiles/run_network.dir/src/model/observable.cpp.o.d -o CMakeFiles/run_network.dir/src/model/observable.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/observable.cpp
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp: In function 'main':
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:588:48: warning: 'sample_time' may be used uninitialized [-Wmaybe-uninitialized]
588 | else t_end = t_start + (double)n_sample*sample_time;
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:106:12: note: 'sample_time' was declared here
106 | double sample_time, *sample_times = 0x0/*, *st, t1*/;
| ^~~~~~~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:1014:47: warning: 'derivs' may be used uninitialized [-Wmaybe-uninitialized]
1014 | derivs_network(t, conc, derivs);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:117:32: note: 'derivs' was declared here
117 | double *conc, *conc_last, *derivs;
| ^~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:1009:49: warning: 'conc' may be used uninitialized [-Wmaybe-uninitialized]
1009 | get_conc_network(conc);
| ~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:117:13: note: 'conc' was declared here
117 | double *conc, *conc_last, *derivs;
| ^~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:1010:45: warning: 'conc_last' may be used uninitialized [-Wmaybe-uninitialized]
1010 | delta = sqrt(VECTOR_DIST(conc, conc_last, n_species_network())) / n_species_network();
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:117:20: note: 'conc_last' was declared here
117 | double *conc, *conc_last, *derivs;
| ^~~~~~~~~
[ 10%] Building CXX object CMakeFiles/run_network.dir/src/model/rateExpression.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/rateExpression.cpp.o -MF CMakeFiles/run_network.dir/src/model/rateExpression.cpp.o.d -o CMakeFiles/run_network.dir/src/model/rateExpression.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpression.cpp
[ 12%] Building CXX object CMakeFiles/run_network.dir/src/model/reaction.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reaction.cpp.o -MF CMakeFiles/run_network.dir/src/model/reaction.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reaction.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reaction.cpp
[ 14%] Building CXX object CMakeFiles/run_network.dir/src/model/simpleSpecies.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/simpleSpecies.cpp.o -MF CMakeFiles/run_network.dir/src/model/simpleSpecies.cpp.o.d -o CMakeFiles/run_network.dir/src/model/simpleSpecies.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/simpleSpecies.cpp
[ 16%] Building CXX object CMakeFiles/run_network.dir/src/pla/PLA.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/pla/PLA.cpp.o -MF CMakeFiles/run_network.dir/src/pla/PLA.cpp.o.d -o CMakeFiles/run_network.dir/src/pla/PLA.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/PLA.cpp
[ 18%] Building CXX object CMakeFiles/run_network.dir/src/util/conversion.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/util/conversion.cpp.o -MF CMakeFiles/run_network.dir/src/util/conversion.cpp.o.d -o CMakeFiles/run_network.dir/src/util/conversion.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/conversion.cpp
[ 20%] Building CXX object CMakeFiles/run_network.dir/src/util/misc.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/util/misc.cpp.o -MF CMakeFiles/run_network.dir/src/util/misc.cpp.o.d -o CMakeFiles/run_network.dir/src/util/misc.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/misc.cpp
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[ 23%] Building CXX object CMakeFiles/run_network.dir/src/model/rateExpressions/rateElementary.cpp.o
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/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/rateExpressions/rateHill.cpp.o -MF CMakeFiles/run_network.dir/src/model/rateExpressions/rateHill.cpp.o.d -o CMakeFiles/run_network.dir/src/model/rateExpressions/rateHill.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions/rateHill.cpp
[ 27%] Building CXX object CMakeFiles/run_network.dir/src/model/rateExpressions/rateMM.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/rateExpressions/rateMM.cpp.o -MF CMakeFiles/run_network.dir/src/model/rateExpressions/rateMM.cpp.o.d -o CMakeFiles/run_network.dir/src/model/rateExpressions/rateMM.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions/rateMM.cpp
[ 29%] Building CXX object CMakeFiles/run_network.dir/src/model/rateExpressions/rateMuParser.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/rateExpressions/rateMuParser.cpp.o -MF CMakeFiles/run_network.dir/src/model/rateExpressions/rateMuParser.cpp.o.d -o CMakeFiles/run_network.dir/src/model/rateExpressions/rateMuParser.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions/rateMuParser.cpp
In file included from ../muparser_v2_2_4/include/../include/muParserStack.h:35,
from ../muparser_v2_2_4/include/../include/muParserBase.h:39,
from ../muparser_v2_2_4/include/../include/muParser.h:32,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions/rateMuParser.hh:12,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions/rateMuParser.cpp:8:
../muparser_v2_2_4/include/../include/muParserToken.h:72:12: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | std::auto_ptr<ParserCallback> m_pCallback;
| ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
from ../muparser_v2_2_4/include/../include/muParserBase.h:33:
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
../muparser_v2_2_4/include/../include/muParserBase.h:291:10: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
291 | std::auto_ptr<token_reader_type> m_pTokenReader; ///< Managed pointer to the token reader object.
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
[ 30%] Building CXX object CMakeFiles/run_network.dir/src/model/rateExpressions/rateSaturation.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/rateExpressions/rateSaturation.cpp.o -MF CMakeFiles/run_network.dir/src/model/rateExpressions/rateSaturation.cpp.o.d -o CMakeFiles/run_network.dir/src/model/rateExpressions/rateSaturation.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions/rateSaturation.cpp
[ 32%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/bioNetGenRxn.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reactions/bioNetGenRxn.cpp.o -MF CMakeFiles/run_network.dir/src/model/reactions/bioNetGenRxn.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reactions/bioNetGenRxn.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.cpp
In file included from ../muparser_v2_2_4/include/muParserStack.h:35,
from ../muparser_v2_2_4/include/muParserBase.h:39,
from ../muparser_v2_2_4/include/muParser.h:32,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/../function.hh:12,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.hh:12,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.cpp:8:
../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | std::auto_ptr<ParserCallback> m_pCallback;
| ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
from ../muparser_v2_2_4/include/muParserBase.h:33:
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
291 | std::auto_ptr<token_reader_type> m_pTokenReader; ///< Managed pointer to the token reader object.
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
[ 34%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/elementaryRxn.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reactions/elementaryRxn.cpp.o -MF CMakeFiles/run_network.dir/src/model/reactions/elementaryRxn.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reactions/elementaryRxn.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/elementaryRxn.cpp
In file included from ../muparser_v2_2_4/include/muParserStack.h:35,
from ../muparser_v2_2_4/include/muParserBase.h:39,
from ../muparser_v2_2_4/include/muParser.h:32,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/../function.hh:12,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.hh:12,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/elementaryRxn.cpp:8:
../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | std::auto_ptr<ParserCallback> m_pCallback;
| ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
from ../muparser_v2_2_4/include/muParserBase.h:33:
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
291 | std::auto_ptr<token_reader_type> m_pTokenReader; ///< Managed pointer to the token reader object.
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
[ 36%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/functionalRxn.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reactions/functionalRxn.cpp.o -MF CMakeFiles/run_network.dir/src/model/reactions/functionalRxn.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reactions/functionalRxn.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/functionalRxn.cpp
[ 38%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/hillRxn.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reactions/hillRxn.cpp.o -MF CMakeFiles/run_network.dir/src/model/reactions/hillRxn.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reactions/hillRxn.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/hillRxn.cpp
In file included from ../muparser_v2_2_4/include/muParserStack.h:35,
from ../muparser_v2_2_4/include/muParserBase.h:39,
from ../muparser_v2_2_4/include/muParser.h:32,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/../function.hh:12,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.hh:12,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/functionalRxn.cpp:8:
../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | std::auto_ptr<ParserCallback> m_pCallback;
| ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
from ../muparser_v2_2_4/include/muParserBase.h:33:
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
291 | std::auto_ptr<token_reader_type> m_pTokenReader; ///< Managed pointer to the token reader object.
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from ../muparser_v2_2_4/include/muParserStack.h:35,
from ../muparser_v2_2_4/include/muParserBase.h:39,
from ../muparser_v2_2_4/include/muParser.h:32,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/../function.hh:12,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.hh:12,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/hillRxn.cpp:8:
../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | std::auto_ptr<ParserCallback> m_pCallback;
| ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
from ../muparser_v2_2_4/include/muParserBase.h:33:
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
291 | std::auto_ptr<token_reader_type> m_pTokenReader; ///< Managed pointer to the token reader object.
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
[ 40%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/michaelisMentenRxn.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reactions/michaelisMentenRxn.cpp.o -MF CMakeFiles/run_network.dir/src/model/reactions/michaelisMentenRxn.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reactions/michaelisMentenRxn.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/michaelisMentenRxn.cpp
[ 41%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/saturationRxn.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reactions/saturationRxn.cpp.o -MF CMakeFiles/run_network.dir/src/model/reactions/saturationRxn.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reactions/saturationRxn.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/saturationRxn.cpp
In file included from ../muparser_v2_2_4/include/muParserStack.h:35,
from ../muparser_v2_2_4/include/muParserBase.h:39,
from ../muparser_v2_2_4/include/muParser.h:32,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/../function.hh:12,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.hh:12,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/michaelisMentenRxn.cpp:8:
../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | std::auto_ptr<ParserCallback> m_pCallback;
| ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
from ../muparser_v2_2_4/include/muParserBase.h:33:
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
291 | std::auto_ptr<token_reader_type> m_pTokenReader; ///< Managed pointer to the token reader object.
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from ../muparser_v2_2_4/include/muParserStack.h:35,
from ../muparser_v2_2_4/include/muParserBase.h:39,
from ../muparser_v2_2_4/include/muParser.h:32,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/../function.hh:12,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.hh:12,
from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/saturationRxn.cpp:8:
../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
72 | std::auto_ptr<ParserCallback> m_pCallback;
| ^~~~~~~~
In file included from /usr/include/c++/13/memory:78,
from ../muparser_v2_2_4/include/muParserBase.h:33:
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
291 | std::auto_ptr<token_reader_type> m_pTokenReader; ///< Managed pointer to the token reader object.
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here
66 | template<typename> class auto_ptr;
| ^~~~~~~~
[ 43%] Building CXX object CMakeFiles/run_network.dir/src/pla/base/firingGenerator.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/pla/base/firingGenerator.cpp.o -MF CMakeFiles/run_network.dir/src/pla/base/firingGenerator.cpp.o.d -o CMakeFiles/run_network.dir/src/pla/base/firingGenerator.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base/firingGenerator.cpp
[ 45%] Building CXX object CMakeFiles/run_network.dir/src/pla/base/postleapChecker.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/pla/base/postleapChecker.cpp.o -MF CMakeFiles/run_network.dir/src/pla/base/postleapChecker.cpp.o.d -o CMakeFiles/run_network.dir/src/pla/base/postleapChecker.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base/postleapChecker.cpp
[ 47%] Building CXX object CMakeFiles/run_network.dir/src/pla/base/rxnClassifier.cpp.o
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[ 49%] Building CXX object CMakeFiles/run_network.dir/src/pla/base/tauCalculator.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/pla/base/tauCalculator.cpp.o -MF CMakeFiles/run_network.dir/src/pla/base/tauCalculator.cpp.o.d -o CMakeFiles/run_network.dir/src/pla/base/tauCalculator.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base/tauCalculator.cpp
[ 50%] Building CXX object CMakeFiles/run_network.dir/src/pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp.o
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[ 52%] Building CXX object CMakeFiles/run_network.dir/src/pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp.o
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[ 54%] Building CXX object CMakeFiles/run_network.dir/src/pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp.o -MF CMakeFiles/run_network.dir/src/pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp.o.d -o CMakeFiles/run_network.dir/src/pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp
[ 56%] Building CXX object CMakeFiles/run_network.dir/src/pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp.o
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[ 58%] Building CXX object CMakeFiles/run_network.dir/src/pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp.o
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[ 60%] Building CXX object CMakeFiles/run_network.dir/src/pla/fEuler/fEulerPreleapRB_TC.cpp.o
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[ 76%] Building CXX object CMakeFiles/run_network.dir/src/pla/util/g_Getter.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/pla/util/g_Getter.cpp.o -MF CMakeFiles/run_network.dir/src/pla/util/g_Getter.cpp.o.d -o CMakeFiles/run_network.dir/src/pla/util/g_Getter.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util/g_Getter.cpp
[ 78%] Building CXX object CMakeFiles/run_network.dir/src/pla/util/negPopChecker.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/pla/util/negPopChecker.cpp.o -MF CMakeFiles/run_network.dir/src/pla/util/negPopChecker.cpp.o.d -o CMakeFiles/run_network.dir/src/pla/util/negPopChecker.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util/negPopChecker.cpp
[ 80%] Building CXX object CMakeFiles/run_network.dir/src/pla/util/preleap_TC.cpp.o
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[ 81%] Building CXX object CMakeFiles/run_network.dir/src/pla/util/rbChecker.cpp.o
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[ 83%] Building CXX object CMakeFiles/run_network.dir/src/pla/util/sbChecker.cpp.o
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[ 85%] Building CXX object CMakeFiles/run_network.dir/src/pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp.o
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[ 87%] Building CXX object CMakeFiles/run_network.dir/src/pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp.o
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[ 92%] Building CXX object CMakeFiles/run_network.dir/src/pla/eRungeKutta/util/binomialCorrector_RK.cpp.o
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[ 94%] Building CXX object CMakeFiles/run_network.dir/src/pla/eRungeKutta/util/butcherTableau.cpp.o
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[ 96%] Building CXX object CMakeFiles/run_network.dir/src/util/MTrand/mtrand.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/util/MTrand/mtrand.cpp.o -MF CMakeFiles/run_network.dir/src/util/MTrand/mtrand.cpp.o.d -o CMakeFiles/run_network.dir/src/util/MTrand/mtrand.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand/mtrand.cpp
[ 98%] Building CXX object CMakeFiles/run_network.dir/src/util/rand2/rand2.cpp.o
/usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/util/rand2/rand2.cpp.o -MF CMakeFiles/run_network.dir/src/util/rand2/rand2.cpp.o.d -o CMakeFiles/run_network.dir/src/util/rand2/rand2.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2/rand2.cpp
[100%] Linking CXX executable run_network
/usr/bin/cmake -E cmake_link_script CMakeFiles/run_network.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/run_network.dir/src/network.cpp.o CMakeFiles/run_network.dir/src/network3.cpp.o CMakeFiles/run_network.dir/src/run_network.cpp.o CMakeFiles/run_network.dir/src/model/function.cpp.o CMakeFiles/run_network.dir/src/model/observable.cpp.o CMakeFiles/run_network.dir/src/model/rateExpression.cpp.o CMakeFiles/run_network.dir/src/model/reaction.cpp.o CMakeFiles/run_network.dir/src/model/simpleSpecies.cpp.o CMakeFiles/run_network.dir/src/pla/PLA.cpp.o CMakeFiles/run_network.dir/src/util/conversion.cpp.o CMakeFiles/run_network.dir/src/util/misc.cpp.o CMakeFiles/run_network.dir/src/util/rand.cpp.o CMakeFiles/run_network.dir/src/model/rateExpressions/rateElementary.cpp.o CMakeFiles/run_network.dir/src/model/rateExpressions/rateHill.cpp.o CMakeFiles/run_network.dir/src/model/rateExpressions/rateMM.cpp.o CMakeFiles/run_network.dir/src/model/rateExpressions/rateMuParser.cpp.o CMakeFiles/run_network.dir/src/model/rateExpressions/rateSaturation.cpp.o CMakeFiles/run_network.dir/src/model/reactions/bioNetGenRxn.cpp.o CMakeFiles/run_network.dir/src/model/reactions/elementaryRxn.cpp.o CMakeFiles/run_network.dir/src/model/reactions/functionalRxn.cpp.o CMakeFiles/run_network.dir/src/model/reactions/hillRxn.cpp.o CMakeFiles/run_network.dir/src/model/reactions/michaelisMentenRxn.cpp.o CMakeFiles/run_network.dir/src/model/reactions/saturationRxn.cpp.o CMakeFiles/run_network.dir/src/pla/base/firingGenerator.cpp.o CMakeFiles/run_network.dir/src/pla/base/postleapChecker.cpp.o CMakeFiles/run_network.dir/src/pla/base/rxnClassifier.cpp.o CMakeFiles/run_network.dir/src/pla/base/tauCalculator.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp.o CMakeFiles/run_network.dir/src/pla/fEuler/fEulerPreleapRB_TC.cpp.o CMakeFiles/run_network.dir/src/pla/fEuler/fEulerPreleapSB_TC.cpp.o CMakeFiles/run_network.dir/src/pla/fEuler/fEulerRB_PL.cpp.o CMakeFiles/run_network.dir/src/pla/fEuler/fEulerRB_TC_PL.cpp.o CMakeFiles/run_network.dir/src/pla/fEuler/fEulerSB_PL.cpp.o CMakeFiles/run_network.dir/src/pla/fEuler/fEulerSB_TC_PL.cpp.o CMakeFiles/run_network.dir/src/pla/fEuler/fEuler_FG.cpp.o CMakeFiles/run_network.dir/src/pla/fEuler/fEuler_RC.cpp.o CMakeFiles/run_network.dir/src/pla/util/fixed_TC.cpp.o CMakeFiles/run_network.dir/src/pla/util/g_Getter.cpp.o CMakeFiles/run_network.dir/src/pla/util/negPopChecker.cpp.o CMakeFiles/run_network.dir/src/pla/util/preleap_TC.cpp.o CMakeFiles/run_network.dir/src/pla/util/rbChecker.cpp.o CMakeFiles/run_network.dir/src/pla/util/sbChecker.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/util/aEff_Calculator.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/util/binomialCorrector_RK.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/util/butcherTableau.cpp.o CMakeFiles/run_network.dir/src/util/MTrand/mtrand.cpp.o CMakeFiles/run_network.dir/src/util/rand2/rand2.cpp.o -o run_network -L/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/lib -Wl,-Bstatic -lmathutils -lmuparser -lsundials_cvode -lsundials_fcvode -lsundials_nvecserial -Wl,-Bdynamic
gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build'
[100%] Built target run_network
gmake[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build/CMakeFiles 0
+ popd
~/build/BUILD/bionetgen-2.8.4
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.OBWELr
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386
++ dirname /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
~/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build ~/build/BUILD/bionetgen-2.8.4
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bionetgen-2.8.4
+ pushd bionetgen-BioNetGen-2.8.4/bng2/Network3/build
+ mkdir -vp /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/bin
mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr'
mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/bin'
+ install -pm 755 run_network /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/bin/
+ popd
~/build/BUILD/bionetgen-2.8.4
+ mkdir -vp /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share/perl5/vendor_perl/BioNetGen
mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share'
mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share/perl5'
mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share/perl5/vendor_perl'
mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share/perl5/vendor_perl/BioNetGen'
+ cp -r bionetgen-BioNetGen-2.8.4/bng2/Perl2 /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share/perl5/vendor_perl/BioNetGen/
+ cp -r bionetgen-BioNetGen-2.8.4/bng2/BNG2.pl /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share/perl5/vendor_perl/BioNetGen/
+ cp -a bionetgen-BioNetGen-2.8.4/bng2/Models2 /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share/perl5/vendor_perl/BioNetGen/
+ rm -f /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share/perl5/vendor_perl/BioNetGen/Models2/bin/run_network_i386-linux
+ rm -f /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share/perl5/vendor_perl/BioNetGen/Models2/run_network
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.8.4-3.fc38 --unique-debug-suffix -2.8.4-3.fc38.i386 --unique-debug-src-base bionetgen-2.8.4-3.fc38.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/bionetgen-2.8.4
extracting debug info from /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/bin/run_network
original debug info size: 8456kB, size after compression: 6452kB
/usr/bin/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
2296 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.RI7NUa
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
~/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Models2 ~/build/BUILD/bionetgen-2.8.4
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bionetgen-2.8.4
+ pushd bionetgen-BioNetGen-2.8.4/bng2/Models2
+ install -pm 755 ../Network3/build/run_network -D ./bin/run_network_i686-linux
+ install -pm 755 ../Network3/build/run_network -D ../bin/run_network_i686-linux
Running some tests ...
+ echo 'Running some tests ...'
+ ../BNG2.pl CaOscillate_Func.bngl CaOscillate_Sat.bngl catalysis.bngl egfr_net.bngl egfr_net_red.bngl egfr_path.bngl energy_example1.bngl fceri_ji.bngl test_continue.bngl
BioNetGen version 2.8.4
Reading from file CaOscillate_Func.bngl (level 0)
Read 17 parameters.
Read 4 molecule types.
Read 4 species.
Read 4 observable(s).
Read 8 reaction rule(s).
ACTION: generate_network( CaOscillate_Func )
Iteration 0: 4 species 0 rxns 0.00e+00 CPU s
Iteration 1: 4 species 8 rxns 0.00e+00 CPU s
Cumulative CPU time for each rule
Rule 1: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 2: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 3: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 4: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 5: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 8: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total : 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Wrote network in net format to ./CaOscillate_Func.net.
CPU TIME: generate_network 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./CaOscillate_Func.net.
Wrote network in net format to ./CaOscillate_Func.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_i686-linux -o ./CaOscillate_Func -p cvode -a 1e-12 -r 1e-12 --cdat 1 --fdat 0 -v -g ./CaOscillate_Func.net ./CaOscillate_Func.net 0.1 200
[simulation PID is: 3071]
run_network 3.0
Read 17 parameters from ./CaOscillate_Func.net
Read 4 species from ./CaOscillate_Func.net
Read 4 group(s) from ./CaOscillate_Func.net
Read 4 function(s) from ./CaOscillate_Func.net
Read 8 reaction(s) from ./CaOscillate_Func.net
8 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
time n_steps n_deriv_calls
0.00 0 0
0.10 717 850
0.20 741 879
0.30 765 904
0.40 790 930
0.50 814 960
0.60 838 985
0.70 863 1015
0.80 887 1040
0.90 912 1067
1.00 936 1099
1.10 961 1129
1.20 993 1171
1.30 1025 1207
1.40 1063 1260
1.50 1105 1310
1.60 1152 1368
1.70 1208 1436
1.80 1281 1523
1.90 1354 1611
2.00 1434 1704
2.10 1509 1792
2.20 1584 1871
2.30 1638 1932
2.40 1688 1984
2.50 1741 2047
2.60 1880 2222
2.70 2351 2772
2.80 2453 2892
2.90 2501 2946
3.00 2552 3007
3.10 2616 3078
3.20 2672 3143
3.30 2730 3208
3.40 2789 3271
3.50 2847 3333
3.60 2903 3395
3.70 2956 3464
3.80 3084 3620
3.90 3240 3799
4.00 3350 3920
4.10 3415 3990
4.20 3465 4046
4.30 3516 4103
4.40 3563 4151
4.50 3599 4196
4.60 3644 4249
4.70 3690 4304
4.80 3746 4371
4.90 3802 4441
5.00 3856 4498
5.10 3895 4545
5.20 3929 4585
5.30 3961 4618
5.40 3984 4642
5.50 4007 4671
5.60 4031 4697
5.70 4054 4722
5.80 4075 4750
5.90 4095 4773
6.00 4115 4795
6.10 4136 4821
6.20 4155 4841
6.30 4168 4854
6.40 4181 4872
6.50 4194 4885
6.60 4207 4898
6.70 4220 4911
6.80 4231 4927
6.90 4239 4935
7.00 4248 4945
7.10 4257 4954
7.20 4265 4963
7.30 4274 4972
7.40 4283 4982
7.50 4292 4996
7.60 4300 5004
7.70 4309 5015
7.80 4318 5024
7.90 4329 5044
8.00 4341 5059
8.10 4352 5077
8.20 4364 5090
8.30 4377 5108
8.40 4396 5135
8.50 4423 5174
8.60 4453 5207
8.70 4492 5256
8.80 4549 5327
8.90 4658 5465
9.00 4979 5847
9.10 5283 6181
9.20 5392 6300
9.30 5431 6345
9.40 5447 6363
9.50 5460 6376
9.60 5473 6389
9.70 5485 6405
9.80 5498 6418
9.90 5511 6431
10.00 5524 6445
10.10 5537 6458
10.20 5549 6475
10.30 5562 6489
10.40 5575 6502
10.50 5588 6516
10.60 5601 6534
10.70 5613 6547
10.80 5626 6562
10.90 5639 6575
11.00 5652 6590
11.10 5664 6608
11.20 5677 6621
11.30 5690 6638
11.40 5708 6656
11.50 5725 6674
11.60 5742 6696
11.70 5759 6714
11.80 5777 6733
11.90 5794 6755
12.00 5811 6773
12.10 5829 6791
12.20 5846 6809
12.30 5863 6832
12.40 5880 6851
12.50 5898 6871
12.60 5915 6894
12.70 5934 6915
12.80 5958 6940
12.90 5981 6969
13.00 6004 6994
13.10 6031 7026
13.20 6063 7065
13.30 6095 7100
13.40 6129 7145
13.50 6172 7196
13.60 6218 7252
13.70 6272 7316
13.80 6345 7398
13.90 6417 7485
14.00 6498 7583
14.10 6573 7669
14.20 6648 7748
14.30 6704 7810
14.40 6754 7867
14.50 6806 7929
14.60 6933 8086
14.70 7384 8613
14.80 7501 8742
14.90 7554 8801
15.00 7603 8864
15.10 7665 8933
15.20 7720 8999
15.30 7776 9062
15.40 7833 9124
15.50 7889 9184
15.60 7946 9241
15.70 8003 9314
15.80 8128 9466
15.90 8283 9646
16.00 8394 9768
16.10 8459 9838
16.20 8509 9895
16.30 8559 9951
16.40 8606 10003
16.50 8642 10044
16.60 8687 10097
16.70 8732 10151
16.80 8787 10212
16.90 8843 10286
17.00 8897 10344
17.10 8937 10391
17.20 8973 10433
17.30 9007 10468
17.40 9030 10495
17.50 9054 10522
17.60 9077 10547
17.70 9101 10577
17.80 9123 10602
17.90 9142 10625
18.00 9162 10651
18.10 9183 10673
18.20 9202 10697
18.30 9212 10712
18.40 9223 10723
18.50 9233 10734
18.60 9243 10744
18.70 9253 10754
18.80 9263 10764
18.90 9274 10779
19.00 9284 10789
19.10 9294 10799
19.20 9304 10809
19.30 9315 10820
19.40 9325 10830
19.50 9335 10845
19.60 9345 10855
19.70 9355 10866
19.80 9366 10877
19.90 9376 10889
20.00 9386 10908
Time course of concentrations written to file ./CaOscillate_Func.cdat.
Time course of groups written to file ./CaOscillate_Func.gdat.
Propagation took 1.00e-02 CPU seconds
Program times: 0.01 CPU s 0.00 clock s
Updating species concentrations from ./CaOscillate_Func.cdat
CPU TIME: simulate 0.01 s.
Finished processing file CaOscillate_Func.bngl.
CPU TIME: total 0.02 s.
BioNetGen version 2.8.4
Reading from file CaOscillate_Sat.bngl (level 0)
Read 17 parameters.
Read 4 molecule types.
Read 4 species.
Read 4 observable(s).
Read 8 reaction rule(s).
ACTION: generate_network( CaOscillate_Sat )
Iteration 0: 4 species 0 rxns 0.00e+00 CPU s
Iteration 1: 4 species 8 rxns 0.00e+00 CPU s
Cumulative CPU time for each rule
Rule 1: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 2: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 3: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 4: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 5: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 8: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total : 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Wrote network in net format to ./CaOscillate_Sat.net.
CPU TIME: generate_network 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./CaOscillate_Sat.net.
Wrote network in net format to ./CaOscillate_Sat.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_i686-linux -o ./CaOscillate_Sat -p cvode -a 1e-12 -r 1e-12 --cdat 1 --fdat 0 -v -g ./CaOscillate_Sat.net ./CaOscillate_Sat.net 0.1 200
[simulation PID is: 3073]
run_network 3.0
Read 17 parameters from ./CaOscillate_Sat.net
Read 4 species from ./CaOscillate_Sat.net
Read 4 group(s) from ./CaOscillate_Sat.net
Read 0 function(s) from ./CaOscillate_Sat.net
Read 8 reaction(s) from ./CaOscillate_Sat.net
8 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
time n_steps n_deriv_calls
0.00 0 0
0.10 719 851
0.20 753 889
0.30 788 924
0.40 819 960
0.50 842 984
0.60 865 1008
0.70 888 1036
0.80 911 1060
0.90 934 1091
1.00 957 1116
1.10 983 1146
1.20 1014 1184
1.30 1046 1218
1.40 1079 1259
1.50 1122 1310
1.60 1169 1362
1.70 1226 1428
1.80 1296 1512
1.90 1370 1605
2.00 1450 1698
2.10 1526 1787
2.20 1601 1866
2.30 1655 1927
2.40 1705 1979
2.50 1759 2043
2.60 1897 2217
2.70 2371 2794
2.80 2470 2900
2.90 2528 2962
3.00 2575 3020
3.10 2628 3083
3.20 2680 3143
3.30 2732 3204
3.40 2784 3261
3.50 2836 3315
3.60 2888 3373
3.70 2941 3438
3.80 3067 3595
3.90 3224 3777
4.00 3337 3901
4.10 3402 3971
4.20 3456 4029
4.30 3510 4087
4.40 3558 4140
4.50 3594 4180
4.60 3640 4236
4.70 3688 4292
4.80 3746 4359
4.90 3805 4430
5.00 3862 4493
5.10 3903 4540
5.20 3941 4580
5.30 3975 4619
5.40 4000 4645
5.50 4025 4675
5.60 4051 4705
5.70 4076 4735
5.80 4099 4760
5.90 4119 4782
6.00 4140 4808
6.10 4162 4831
6.20 4181 4855
6.30 4192 4871
6.40 4204 4883
6.50 4216 4896
6.60 4228 4908
6.70 4240 4920
6.80 4252 4936
6.90 4264 4948
7.00 4276 4960
7.10 4288 4972
7.20 4299 4983
7.30 4311 4999
7.40 4323 5011
7.50 4335 5023
7.60 4347 5035
7.70 4359 5047
7.80 4371 5063
7.90 4383 5075
8.00 4395 5087
8.10 4407 5099
8.20 4419 5113
8.30 4434 5143
8.40 4450 5161
8.50 4471 5189
8.60 4498 5230
8.70 4533 5272
8.80 4592 5345
8.90 4696 5473
9.00 5025 5862
9.10 5314 6183
9.20 5422 6298
9.30 5462 6344
9.40 5475 6364
9.50 5485 6378
9.60 5494 6387
9.70 5503 6402
9.80 5513 6412
9.90 5522 6423
10.00 5532 6433
10.10 5541 6444
10.20 5551 6454
10.30 5562 6471
10.40 5575 6485
10.50 5588 6498
10.60 5600 6511
10.70 5613 6525
10.80 5626 6544
10.90 5638 6558
11.00 5651 6571
11.10 5664 6586
11.20 5677 6605
11.30 5691 6621
11.40 5708 6639
11.50 5725 6661
11.60 5742 6678
11.70 5760 6697
11.80 5777 6715
11.90 5794 6737
12.00 5811 6755
12.10 5828 6773
12.20 5845 6795
12.30 5862 6813
12.40 5880 6833
12.50 5897 6852
12.60 5914 6875
12.70 5934 6897
12.80 5957 6921
12.90 5980 6950
13.00 6003 6975
13.10 6031 7008
13.20 6063 7047
13.30 6094 7086
13.40 6128 7126
13.50 6171 7177
13.60 6218 7234
13.70 6273 7301
13.80 6345 7381
13.90 6417 7472
14.00 6501 7568
14.10 6578 7655
14.20 6655 7740
14.30 6708 7800
14.40 6759 7858
14.50 6813 7917
14.60 6940 8079
14.70 7388 8611
14.80 7506 8741
14.90 7559 8800
15.00 7608 8861
15.10 7668 8930
15.20 7728 8997
15.30 7788 9063
15.40 7848 9127
15.50 7908 9191
15.60 7965 9253
15.70 8017 9318
15.80 8141 9471
15.90 8281 9636
16.00 8398 9764
16.10 8466 9837
16.20 8522 9897
16.30 8578 9957
16.40 8626 10010
16.50 8664 10052
16.60 8708 10105
16.70 8758 10161
16.80 8816 10230
16.90 8876 10295
17.00 8934 10360
17.10 8976 10408
17.20 9014 10452
17.30 9048 10487
17.40 9073 10516
17.50 9099 10543
17.60 9124 10576
17.70 9149 10602
17.80 9172 10627
17.90 9192 10653
18.00 9213 10675
18.10 9234 10697
18.20 9253 10721
18.30 9265 10738
18.40 9275 10748
18.50 9285 10759
18.60 9295 10769
18.70 9305 10783
18.80 9315 10793
18.90 9325 10803
19.00 9335 10813
19.10 9345 10823
19.20 9354 10832
19.30 9364 10846
19.40 9374 10856
19.50 9384 10868
19.60 9394 10878
19.70 9404 10889
19.80 9414 10901
19.90 9424 10919
20.00 9434 10929
Time course of concentrations written to file ./CaOscillate_Sat.cdat.
Time course of groups written to file ./CaOscillate_Sat.gdat.
Propagation took 1.00e-02 CPU seconds
Program times: 0.01 CPU s 0.00 clock s
Updating species concentrations from ./CaOscillate_Sat.cdat
CPU TIME: simulate 0.03 s.
Finished processing file CaOscillate_Sat.bngl.
CPU TIME: total 0.05 s.
BioNetGen version 2.8.4
Reading from file catalysis.bngl (level 0)
CPU TIME: version 0.00 s.
Warning: Parameter Gf_S_kinase is set to a negative value: -41.5
Warning: Parameter Gf_S_pptase is set to a negative value: -41.5
Warning: Parameter Ea0_S_kinase is set to a negative value: -7.7
Warning: Parameter Ea0_S_pptase is set to a negative value: -7.7
Warning: Parameter Ea0_cat_kinase is set to a negative value: -11.9
Read 17 parameters.
Read 1 compartments.
Read 5 molecule types.
Read 5 species.
Read 4 reaction rule(s).
Read 4 energy patterns(s).
Read 6 observable(s).
ACTION: generate_network( catalysis )
Iteration 0: 5 species 0 rxns 0.00e+00 CPU s
Iteration 1: 7 species 2 rxns 1.00e-02 CPU s
Iteration 2: 9 species 6 rxns 0.00e+00 CPU s
Iteration 3: 10 species 10 rxns 1.00e-02 CPU s
Iteration 4: 10 species 12 rxns 0.00e+00 CPU s
Cumulative CPU time for each rule
Rule 1: 4 reactions 1.00e-02 CPU s 2.50e-03 CPU s/rxn
Rule 2: 4 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 3: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 4: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Total : 12 reactions 2.00e-02 CPU s 1.67e-03 CPU s/rxn
Wrote network in net format to ./catalysis.net.
CPU TIME: generate_network 0.02 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./catalysis.net.
Wrote network in net format to ./catalysis.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_i686-linux -o ./catalysis -p cvode -a 0.001 -r 1e-07 --cdat 1 --fdat 0 -g ./catalysis.net ./catalysis.net 30 120
[simulation PID is: 3075]
run_network 3.0
Read 30 parameters from ./catalysis.net
@C::$ATP() is a fixed (boundaryCondition) variable
@C::$ADP() is a fixed (boundaryCondition) variable
Read 10 species from ./catalysis.net
Read 6 group(s) from ./catalysis.net
Read 0 function(s) from ./catalysis.net
Read 12 reaction(s) from ./catalysis.net
12 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./catalysis.cdat.
Time course of groups written to file ./catalysis.gdat.
Propagation took 0.00e+00 CPU seconds
Program times: 0.00 CPU s 0.00 clock s
Updating species concentrations from ./catalysis.cdat
CPU TIME: simulate 0.01 s.
Finished processing file catalysis.bngl.
CPU TIME: total 0.04 s.
BioNetGen version 2.8.4
Reading from file egfr_net.bngl (level 0)
Read 48 parameters.
Read 5 molecule types.
Read 6 species.
Read 23 reaction rule(s).
Read 15 observable(s).
ACTION: generate_network( egfr_net )
Iteration 0: 6 species 0 rxns 0.00e+00 CPU s
Iteration 1: 7 species 3 rxns 0.00e+00 CPU s
Iteration 2: 8 species 5 rxns 0.00e+00 CPU s
Iteration 3: 10 species 8 rxns 1.00e-02 CPU s
Iteration 4: 19 species 21 rxns 2.00e-02 CPU s
Iteration 5: 37 species 76 rxns 7.00e-02 CPU s
Iteration 6: 69 species 213 rxns 1.60e-01 CPU s
Iteration 7: 131 species 494 rxns 3.70e-01 CPU s
Iteration 8: 295 species 1260 rxns 1.15e+00 CPU s
Iteration 9: 356 species 3088 rxns 3.00e+00 CPU s
Iteration 10: 356 species 3749 rxns 1.38e+00 CPU s
Cumulative CPU time for each rule
Rule 1: 48 reactions 6.00e-02 CPU s 1.25e-03 CPU s/rxn
Rule 2: 600 reactions 1.51e+00 CPU s 2.52e-03 CPU s/rxn
Rule 3: 144 reactions 1.70e-01 CPU s 1.18e-03 CPU s/rxn
Rule 4: 96 reactions 1.30e-01 CPU s 1.35e-03 CPU s/rxn
Rule 5: 156 reactions 1.50e-01 CPU s 9.62e-04 CPU s/rxn
Rule 6: 104 reactions 9.00e-02 CPU s 8.65e-04 CPU s/rxn
Rule 7: 96 reactions 1.30e-01 CPU s 1.35e-03 CPU s/rxn
Rule 8: 104 reactions 1.10e-01 CPU s 1.06e-03 CPU s/rxn
Rule 9: 312 reactions 4.30e-01 CPU s 1.38e-03 CPU s/rxn
Rule 10: 312 reactions 4.50e-01 CPU s 1.44e-03 CPU s/rxn
Rule 11: 312 reactions 4.80e-01 CPU s 1.54e-03 CPU s/rxn
Rule 12: 208 reactions 2.60e-01 CPU s 1.25e-03 CPU s/rxn
Rule 13: 208 reactions 2.80e-01 CPU s 1.35e-03 CPU s/rxn
Rule 14: 208 reactions 3.60e-01 CPU s 1.73e-03 CPU s/rxn
Rule 15: 208 reactions 3.80e-01 CPU s 1.83e-03 CPU s/rxn
Rule 16: 208 reactions 3.30e-01 CPU s 1.59e-03 CPU s/rxn
Rule 17: 208 reactions 3.80e-01 CPU s 1.83e-03 CPU s/rxn
Rule 18: 208 reactions 3.40e-01 CPU s 1.63e-03 CPU s/rxn
Rule 19: 2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn
Rule 20: 2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn
Rule 21: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 22: 2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn
Rule 23: 2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn
Total : 3749 reactions 6.16e+00 CPU s 1.64e-03 CPU s/rxn
Wrote network in net format to ./egfr_net.net.
CPU TIME: generate_network 6.27 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_net.net.
Wrote network in net format to ./egfr_net.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_i686-linux -o ./egfr_net -p cvode -a 1e-08 -r 1e-08 -b --cdat 1 --fdat 0 -g ./egfr_net.net ./egfr_net.net 0.8 50
[simulation PID is: 3077]
run_network 3.0
Read 48 parameters from ./egfr_net.net
Read 356 species from ./egfr_net.net
Read 15 group(s) from ./egfr_net.net
Read 0 function(s) from ./egfr_net.net
Read 3749 reaction(s) from ./egfr_net.net
3749 reaction(s) have nonzero rate
Initialization took 0.02 CPU seconds
Propagating with cvode using GMRES
Time course of concentrations written to file ./egfr_net.cdat.
Time course of groups written to file ./egfr_net.gdat.
Propagation took 6.00e-02 CPU seconds
Program times: 0.08 CPU s 0.00 clock s
Updating species concentrations from ./egfr_net.cdat
CPU TIME: simulate 0.18 s.
Finished processing file egfr_net.bngl.
CPU TIME: total 6.49 s.
BioNetGen version 2.8.4
Reading from file egfr_net_red.bngl (level 0)
Read 48 parameters.
Read 7 molecule types.
Read 7 species.
Read 14 observable(s).
Read 26 reaction rule(s).
ACTION: generate_network( egfr_net_red )
Iteration 0: 7 species 0 rxns 0.00e+00 CPU s
Iteration 1: 11 species 4 rxns 0.00e+00 CPU s
Iteration 2: 13 species 10 rxns 1.00e-02 CPU s
Iteration 3: 15 species 14 rxns 1.00e-02 CPU s
Iteration 4: 20 species 21 rxns 1.00e-02 CPU s
Iteration 5: 26 species 39 rxns 2.00e-02 CPU s
Iteration 6: 33 species 62 rxns 2.00e-02 CPU s
Iteration 7: 38 species 90 rxns 2.00e-02 CPU s
Iteration 8: 40 species 115 rxns 3.00e-02 CPU s
Iteration 9: 40 species 123 rxns 0.00e+00 CPU s
Cumulative CPU time for each rule
Rule 1: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 2: 8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn
Rule 3: 12 reactions 1.00e-02 CPU s 8.33e-04 CPU s/rxn
Rule 4: 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 5: 12 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 7: 1 reactions 1.00e-02 CPU s 1.00e-02 CPU s/rxn
Rule 8: 3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 9: 3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 10: 1 reactions 1.00e-02 CPU s 1.00e-02 CPU s/rxn
Rule 11: 3 reactions 1.00e-02 CPU s 3.33e-03 CPU s/rxn
Rule 12: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule 13: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 14: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 15: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule 16: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 17: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 18: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule 19: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule 20: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule 21: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 22: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 23: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 24: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 25: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 26: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Total : 123 reactions 1.10e-01 CPU s 8.94e-04 CPU s/rxn
Wrote network in net format to ./egfr_net_red.net.
CPU TIME: generate_network 0.13 s.
Set concentration of species egf(r) to value 0
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_net_red.net.
Wrote network in net format to ./egfr_net_red.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_i686-linux -o ./egfr_net_red -p cvode -a 1e-08 -r 1e-08 -b -c --cdat 1 --fdat 0 -g ./egfr_net_red.net ./egfr_net_red.net 10000 10
[simulation PID is: 3079]
run_network 3.0
Read 48 parameters from ./egfr_net_red.net
Read 40 species from ./egfr_net_red.net
Read 14 group(s) from ./egfr_net_red.net
Read 3 function(s) from ./egfr_net_red.net
Read 123 reaction(s) from ./egfr_net_red.net
123 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using GMRES
Time course of concentrations written to file ./egfr_net_red.cdat.
Time course of groups written to file ./egfr_net_red.gdat.
Propagation took 0.00e+00 CPU seconds
Program times: 0.00 CPU s 0.00 clock s
Simulation reached steady state by t_end=100000
Updating species concentrations from ./egfr_net_red.cdat
CPU TIME: simulate 0.02 s.
Set concentration of species egf(r) to value egf_tot
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_net_red.net.
Wrote network in net format to ./egfr_net_red.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_i686-linux -o ./egfr_net_red -p cvode -a 1e-08 -r 1e-08 -b --cdat 1 --fdat 0 -g ./egfr_net_red.net ./egfr_net_red.net 1 120
[simulation PID is: 3081]
run_network 3.0
Read 48 parameters from ./egfr_net_red.net
Read 40 species from ./egfr_net_red.net
Read 14 group(s) from ./egfr_net_red.net
Read 3 function(s) from ./egfr_net_red.net
Read 123 reaction(s) from ./egfr_net_red.net
123 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using GMRES
Time course of concentrations written to file ./egfr_net_red.cdat.
Time course of groups written to file ./egfr_net_red.gdat.
Propagation took 1.00e-02 CPU seconds
Program times: 0.01 CPU s 0.00 clock s
Updating species concentrations from ./egfr_net_red.cdat
CPU TIME: simulate 0.01 s.
Finished processing file egfr_net_red.bngl.
CPU TIME: total 0.21 s.
BioNetGen version 2.8.4
Reading from file egfr_path.bngl (level 0)
Read 48 parameters.
Read 18 species.
Read 19 reaction rule(s).
Read 11 observable(s).
ACTION: generate_network( egfr_path )
Iteration 0: 18 species 0 rxns 0.00e+00 CPU s
Iteration 1: 18 species 37 rxns 2.00e-02 CPU s
Cumulative CPU time for each rule
Rule 1: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 2: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 3: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 4: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 5: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 6: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 7: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 8: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Rule 9: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 10: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 11: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 12: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 13: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 14: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 15: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 16: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 17: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 18: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 19: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Total : 37 reactions 2.00e-02 CPU s 5.41e-04 CPU s/rxn
Wrote network in net format to ./egfr_path.net.
CPU TIME: generate_network 0.03 s.
Set concentration of species EGF() to value 0
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_path.net.
Wrote network in net format to ./egfr_path.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_i686-linux -o ./egfr_path -p cvode -a 1e-08 -r 1e-08 -c --cdat 1 --fdat 0 -g ./egfr_path.net ./egfr_path.net 10000 10
[simulation PID is: 3083]
run_network 3.0
Read 48 parameters from ./egfr_path.net
Read 18 species from ./egfr_path.net
Read 11 group(s) from ./egfr_path.net
Read 0 function(s) from ./egfr_path.net
Read 37 reaction(s) from ./egfr_path.net
37 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./egfr_path.cdat.
Time course of groups written to file ./egfr_path.gdat.
Propagation took 0.00e+00 CPU seconds
Program times: 0.00 CPU s 0.00 clock s
Simulation reached steady state by t_end=100000
Updating species concentrations from ./egfr_path.cdat
CPU TIME: simulate 0.01 s.
Set concentration of species EGF() to value EGF_tot
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_path.net.
Wrote network in net format to ./egfr_path.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_i686-linux -o ./egfr_path -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./egfr_path.net ./egfr_path.net 1 120
[simulation PID is: 3085]
run_network 3.0
Read 48 parameters from ./egfr_path.net
Read 18 species from ./egfr_path.net
Read 11 group(s) from ./egfr_path.net
Read 0 function(s) from ./egfr_path.net
Read 37 reaction(s) from ./egfr_path.net
37 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./egfr_path.cdat.
Time course of groups written to file ./egfr_path.gdat.
Propagation took 0.00e+00 CPU seconds
Program times: 0.00 CPU s 0.00 clock s
Updating species concentrations from ./egfr_path.cdat
CPU TIME: simulate 0.01 s.
Finished processing file egfr_path.bngl.
CPU TIME: total 0.08 s.
BioNetGen version 2.8.4
Reading from file energy_example1.bngl (level 0)
CPU TIME: version 0.00 s.
Warning: Parameter Gf_SA is set to a negative value: -47.5
Warning: Parameter Gf_SB is set to a negative value: -47.5
Warning: Parameter Gf_SC is set to a negative value: -47.5
Warning: Parameter Gf_SBC is set to a negative value: -5.9
Warning: Parameter Gf_SABC is set to a negative value: -1.8
Warning: Parameter Ea0_SA is set to a negative value: -17.8
Warning: Parameter Ea0_SB is set to a negative value: -17.8
Warning: Parameter Ea0_SC is set to a negative value: -17.8
Read 19 parameters.
Read 1 compartments.
Read 4 molecule types.
Read 4 species.
Read 6 energy patterns(s).
Read 11 observable(s).
Read 3 reaction rule(s).
ACTION: generate_network( energy_example1 )
Iteration 0: 4 species 0 rxns 0.00e+00 CPU s
Iteration 1: 7 species 3 rxns 0.00e+00 CPU s
Iteration 2: 10 species 12 rxns 1.00e-02 CPU s
Iteration 3: 11 species 21 rxns 1.00e-02 CPU s
Iteration 4: 11 species 24 rxns 1.00e-02 CPU s
Cumulative CPU time for each rule
Rule 1: 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 2: 8 reactions 2.00e-02 CPU s 2.50e-03 CPU s/rxn
Rule 3: 8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn
Total : 24 reactions 3.00e-02 CPU s 1.25e-03 CPU s/rxn
Wrote network in net format to ./energy_example1.net.
CPU TIME: generate_network 0.03 s.
Wrote SBML to ./energy_example1_sbml.xml.
CPU TIME: writeSBML 0.01 s.
Finished processing file energy_example1.bngl.
CPU TIME: total 0.06 s.
BioNetGen version 2.8.4
Reading from file fceri_ji.bngl (level 0)
Read 26 parameters.
Read 4 species.
Adding pY as allowed state of component b of molecule Rec
Adding pY as allowed state of component g of molecule Rec
Adding pY as allowed state of component l of molecule Syk
Adding pY as allowed state of component a of molecule Syk
Read 19 reaction rule(s).
Read 10 observable(s).
ACTION: generate_network( fceri_ji )
Iteration 0: 4 species 0 rxns 0.00e+00 CPU s
Iteration 1: 6 species 2 rxns 0.00e+00 CPU s
Iteration 2: 9 species 8 rxns 1.00e-02 CPU s
Iteration 3: 12 species 20 rxns 1.00e-02 CPU s
Iteration 4: 22 species 36 rxns 2.00e-02 CPU s
Iteration 5: 43 species 100 rxns 6.00e-02 CPU s
Iteration 6: 78 species 255 rxns 1.40e-01 CPU s
Iteration 7: 139 species 586 rxns 3.00e-01 CPU s
Iteration 8: 199 species 1190 rxns 6.20e-01 CPU s
Iteration 9: 303 species 1841 rxns 7.60e-01 CPU s
Iteration 10: 354 species 3143 rxns 1.33e+00 CPU s
Iteration 11: 354 species 3680 rxns 5.70e-01 CPU s
Cumulative CPU time for each rule
Rule 1: 48 reactions 8.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule 2: 1152 reactions 1.05e+00 CPU s 9.11e-04 CPU s/rxn
Rule 3: 312 reactions 3.30e-01 CPU s 1.06e-03 CPU s/rxn
Rule 4: 36 reactions 9.00e-02 CPU s 2.50e-03 CPU s/rxn
Rule 5: 24 reactions 3.00e-02 CPU s 1.25e-03 CPU s/rxn
Rule 6: 312 reactions 3.20e-01 CPU s 1.03e-03 CPU s/rxn
Rule 7: 36 reactions 7.00e-02 CPU s 1.94e-03 CPU s/rxn
Rule 8: 24 reactions 4.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule 9: 832 reactions 8.00e-01 CPU s 9.62e-04 CPU s/rxn
Rule 10: 48 reactions 9.00e-02 CPU s 1.87e-03 CPU s/rxn
Rule 11: 48 reactions 8.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule 12: 64 reactions 1.50e-01 CPU s 2.34e-03 CPU s/rxn
Rule 13: 64 reactions 1.00e-01 CPU s 1.56e-03 CPU s/rxn
Rule 14: 156 reactions 1.30e-01 CPU s 8.33e-04 CPU s/rxn
Rule 15: 104 reactions 8.00e-02 CPU s 7.69e-04 CPU s/rxn
Rule 16: 208 reactions 1.90e-01 CPU s 9.13e-04 CPU s/rxn
Rule 17: 208 reactions 1.80e-01 CPU s 8.65e-04 CPU s/rxn
Rule 18: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Rule 19: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total : 3680 reactions 3.82e+00 CPU s 1.04e-03 CPU s/rxn
Wrote network in net format to ./fceri_ji.net.
CPU TIME: generate_network 3.91 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./fceri_ji.net.
Wrote network in net format to ./fceri_ji.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_i686-linux -o ./fceri_ji -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./fceri_ji.net ./fceri_ji.net 60 10
[simulation PID is: 3087]
run_network 3.0
Read 26 parameters from ./fceri_ji.net
Read 354 species from ./fceri_ji.net
Read 10 group(s) from ./fceri_ji.net
Read 0 function(s) from ./fceri_ji.net
Read 3680 reaction(s) from ./fceri_ji.net
Removed 600 reactions with zero rate
3080 reaction(s) have nonzero rate
Initialization took 0.02 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./fceri_ji.cdat.
Time course of groups written to file ./fceri_ji.gdat.
Propagation took 5.60e-01 CPU seconds
Program times: 0.58 CPU s 1.00 clock s
Updating species concentrations from ./fceri_ji.cdat
CPU TIME: simulate 0.68 s.
Finished processing file fceri_ji.bngl.
CPU TIME: total 4.62 s.
BioNetGen version 2.8.4
Reading from file test_continue.bngl (level 0)
Read 19 parameters.
Read 5 molecule types.
Read 4 species.
Read 6 observable(s).
Read 6 reaction rule(s).
ACTION: generate_network( test_continue )
Iteration 0: 4 species 0 rxns 0.00e+00 CPU s
Iteration 1: 6 species 2 rxns 1.00e-02 CPU s
Iteration 2: 7 species 5 rxns 0.00e+00 CPU s
Iteration 3: 8 species 7 rxns 0.00e+00 CPU s
Iteration 4: 12 species 12 rxns 1.00e-02 CPU s
Iteration 5: 17 species 30 rxns 2.00e-02 CPU s
Iteration 6: 22 species 59 rxns 2.00e-02 CPU s
Iteration 7: 22 species 76 rxns 3.00e-02 CPU s
Cumulative CPU time for each rule
Rule 1: 8 reactions 2.00e-02 CPU s 2.50e-03 CPU s/rxn
Rule 2: 20 reactions 2.00e-02 CPU s 1.00e-03 CPU s/rxn
Rule 3: 4 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 4: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule 5: 24 reactions 2.00e-02 CPU s 8.33e-04 CPU s/rxn
Rule 6: 14 reactions 2.00e-02 CPU s 1.43e-03 CPU s/rxn
Total : 76 reactions 9.00e-02 CPU s 1.18e-03 CPU s/rxn
Wrote network in net format to ./test_continue.net.
CPU TIME: generate_network 0.09 s.
Set concentration of species EGF(R) to value EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./test_continue.net.
Wrote network in net format to ./test_continue.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_i686-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./test_continue.net ./test_continue.net 2.5 40
[simulation PID is: 3089]
run_network 3.0
Read 19 parameters from ./test_continue.net
Read 22 species from ./test_continue.net
Read 6 group(s) from ./test_continue.net
Read 0 function(s) from ./test_continue.net
Read 76 reaction(s) from ./test_continue.net
76 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./test_continue.cdat.
Time course of groups written to file ./test_continue.gdat.
Propagation took 0.00e+00 CPU seconds
Program times: 0.00 CPU s 0.00 clock s
Updating species concentrations from ./test_continue.cdat
CPU TIME: simulate 0.01 s.
Set concentration of species EGF(R) to value 10*EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./test_continue.net.
Wrote network in net format to ./test_continue.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_i686-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -x -i 1.000000000000e+02 -g ./test_continue.net ./test_continue.net 2.5 40
[simulation PID is: 3091]
run_network 3.0
Read 20 parameters from ./test_continue.net
Read 22 species from ./test_continue.net
Read 6 group(s) from ./test_continue.net
Read 0 function(s) from ./test_continue.net
Read 76 reaction(s) from ./test_continue.net
76 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./test_continue.cdat.
Time course of groups written to file ./test_continue.gdat.
Propagation took 0.00e+00 CPU seconds
Program times: 0.00 CPU s 0.00 clock s
Updating species concentrations from ./test_continue.cdat
CPU TIME: simulate 0.01 s.
Set concentration of species EGF(R) to value 0.1*EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./test_continue.net.
Wrote network in net format to ./test_continue.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_i686-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -x -i 2.000000000000e+02 -g ./test_continue.net ./test_continue.net 2.5 40
[simulation PID is: 3093]
run_network 3.0
Read 21 parameters from ./test_continue.net
Read 22 species from ./test_continue.net
Read 6 group(s) from ./test_continue.net
Read 0 function(s) from ./test_continue.net
Read 76 reaction(s) from ./test_continue.net
76 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./test_continue.cdat.
Time course of groups written to file ./test_continue.gdat.
Propagation took 0.00e+00 CPU seconds
Program times: 0.00 CPU s 0.00 clock s
Updating species concentrations from ./test_continue.cdat
CPU TIME: simulate 0.02 s.
Reset species concentrations to "DEFAULT" saved values.
CPU TIME: resetConcentrations 0.00 s.
Set concentration of species EGF(R) to value EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"ssa" )
Network simulation using ssa
Wrote network in net format to ./test_continue_ssa.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_i686-linux -o ./test_continue_ssa -p ssa -h 1180777668 --cdat 1 --fdat 0 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40
[simulation PID is: 3095]
run_network 3.0
Read 21 parameters from ./test_continue_ssa.net
Read 22 species from ./test_continue_ssa.net
Read 6 group(s) from ./test_continue_ssa.net
Read 0 function(s) from ./test_continue_ssa.net
Read 76 reaction(s) from ./test_continue_ssa.net
76 reaction(s) have nonzero rate
rxn_rate_update_interval=1
Average number of update rxns is 14.17
Initialization took 0.00 CPU seconds
Stochastic simulation using direct Gillespie algorithm
TOTAL STEPS: 71887
Time course of concentrations written to file ./test_continue_ssa.cdat.
Time course of groups written to file ./test_continue_ssa.gdat.
Propagation took 1.00e-02 CPU seconds
Program times: 0.01 CPU s 0.00 clock s
Updating species concentrations from ./test_continue_ssa.cdat
CPU TIME: simulate 0.02 s.
Set concentration of species EGF(R) to value 10*EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"ssa" )
Network simulation using ssa
WARNING: writeFile(): Overwriting existing file ./test_continue_ssa.net.
Wrote network in net format to ./test_continue_ssa.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_i686-linux -o ./test_continue_ssa -p ssa -h 553312545 --cdat 1 --fdat 0 -x -i 1.000000000000e+02 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40
[simulation PID is: 3097]
run_network 3.0
Read 22 parameters from ./test_continue_ssa.net
Read 22 species from ./test_continue_ssa.net
Read 6 group(s) from ./test_continue_ssa.net
Read 0 function(s) from ./test_continue_ssa.net
Read 76 reaction(s) from ./test_continue_ssa.net
76 reaction(s) have nonzero rate
rxn_rate_update_interval=1
Average number of update rxns is 14.17
Initialization took 0.00 CPU seconds
Stochastic simulation using direct Gillespie algorithm
TOTAL STEPS: 130468
Time course of concentrations written to file ./test_continue_ssa.cdat.
Time course of groups written to file ./test_continue_ssa.gdat.
Propagation took 2.00e-02 CPU seconds
Program times: 0.02 CPU s 0.00 clock s
Updating species concentrations from ./test_continue_ssa.cdat
CPU TIME: simulate 0.03 s.
Set concentration of species EGF(R) to value 0.1*EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"ssa" )
Network simulation using ssa
WARNING: writeFile(): Overwriting existing file ./test_continue_ssa.net.
Wrote network in net format to ./test_continue_ssa.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_i686-linux -o ./test_continue_ssa -p ssa -h 553715147 --cdat 1 --fdat 0 -x -i 2.000000000000e+02 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40
[simulation PID is: 3099]
run_network 3.0
Read 23 parameters from ./test_continue_ssa.net
Read 22 species from ./test_continue_ssa.net
Read 6 group(s) from ./test_continue_ssa.net
Read 0 function(s) from ./test_continue_ssa.net
Read 76 reaction(s) from ./test_continue_ssa.net
76 reaction(s) have nonzero rate
rxn_rate_update_interval=1
Average number of update rxns is 14.17
Initialization took 0.00 CPU seconds
Stochastic simulation using direct Gillespie algorithm
TOTAL STEPS: 106916
Time course of concentrations written to file ./test_continue_ssa.cdat.
Time course of groups written to file ./test_continue_ssa.gdat.
Propagation took 2.00e-02 CPU seconds
Program times: 0.02 CPU s 0.00 clock s
Updating species concentrations from ./test_continue_ssa.cdat
CPU TIME: simulate 0.03 s.
Finished processing file test_continue.bngl.
CPU TIME: total 0.22 s.
Tests finished.
Processing files: bionetgen-2.8.4-3.fc38.i686
+ echo 'Tests finished.'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.uZgJSn
+ umask 022
+ cd /builddir/build/BUILD
+ cd bionetgen-2.8.4
+ DOCDIR=/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share/doc/bionetgen
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share/doc/bionetgen
+ cp -pr bionetgen-BioNetGen-2.8.4/README.md /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share/doc/bionetgen
+ cp -pr bionetgen-BioNetGen-2.8.4/bng2/CREDITS.txt /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share/doc/bionetgen
+ cp -pr bionetgen-BioNetGen-2.8.4/bng2/CHANGES.txt /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share/doc/bionetgen
+ cp -pr bionetgen-BioNetGen-2.8.4/bng2/VERSION /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share/doc/bionetgen
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Ym0pY4
+ umask 022
+ cd /builddir/build/BUILD
+ cd bionetgen-2.8.4
+ LICENSEDIR=/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share/licenses/bionetgen
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share/licenses/bionetgen
+ cp -pr bionetgen-BioNetGen-2.8.4/LICENSE /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386/usr/share/licenses/bionetgen
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bionetgen = 2.8.4-3.fc38 bionetgen(x86-32) = 2.8.4-3.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.32) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_3.3.1) libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.29) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.26) libstdc++.so.6(GLIBCXX_3.4.29) libstdc++.so.6(GLIBCXX_3.4.30) libstdc++.so.6(GLIBCXX_3.4.9) rtld(GNU_HASH)
Processing files: bionetgen-perl-2.8.4-3.fc38.noarch
Provides: bionetgen-perl = 2.8.4-3.fc38 bundled(XML-TreePP) = 0.41 perl(Viz)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl perl(Carp) perl(Class::Struct) perl(Config) perl(Cwd) perl(Data::Dumper) perl(Exporter) perl(File::Basename) perl(File::Path) perl(File::Spec) perl(File::Spec::Win32) perl(FindBin) perl(Getopt::Long) perl(IO::Handle) perl(IO::Select) perl(IPC::Open3) perl(List::Util) perl(Math::Trig) perl(POSIX) perl(Scalar::Util) perl(Storable) perl(Symbol) perl(constant) perl(lib) perl(strict) perl(vars) perl(warnings)
Processing files: bionetgen-debugsource-2.8.4-3.fc38.i686
Provides: bionetgen-debugsource = 2.8.4-3.fc38 bionetgen-debugsource(x86-32) = 2.8.4-3.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: bionetgen-debuginfo-2.8.4-3.fc38.i686
Provides: bionetgen-debuginfo = 2.8.4-3.fc38 bionetgen-debuginfo(x86-32) = 2.8.4-3.fc38 debuginfo(build-id) = dfc9e335b7a3e58129d2f84306f08d174f4ef533
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bionetgen-debugsource(x86-32) = 2.8.4-3.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386
Wrote: /builddir/build/RPMS/bionetgen-perl-2.8.4-3.fc38.noarch.rpm
Wrote: /builddir/build/RPMS/bionetgen-debugsource-2.8.4-3.fc38.i686.rpm
Wrote: /builddir/build/RPMS/bionetgen-2.8.4-3.fc38.i686.rpm
Wrote: /builddir/build/RPMS/bionetgen-debuginfo-2.8.4-3.fc38.i686.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.O93MeJ
+ umask 022
+ cd /builddir/build/BUILD
+ cd bionetgen-2.8.4
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.i386
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Tqyvrw
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf bionetgen-2.8.4 bionetgen-2.8.4.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild bionetgen-2.8.4-3.fc38.src.rpm
Finish: build phase for bionetgen-2.8.4-3.fc38.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1671798920.414241/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-i686-1671798920.414241/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-i686-1671798920.414241/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/bionetgen-2.8.4-3.fc38.src.rpm) Config(child) 1 minutes 46 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool