Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c155' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5186146 --chroot fedora-rawhide-i386 --detached
Version: 0.62
PID: 20884
Logging PID: 20885
Task:
{'appstream': False,
 'background': True,
 'build_id': 5186146,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-i386',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '056da70e5f337d47b3d83e864e61d924863e654a',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/samtools',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'samtools',
 'package_version': '1.15.1-1',
 'project_dirname': 'gcc-13-test',
 'project_name': 'gcc-13-test',
 'project_owner': 'jakub',
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jakub/gcc-13-test/fedora-rawhide-i386/',
            'id': 'copr_base',
            'name': 'Copr repository'},
           {'baseurl': 'https://jakub.fedorapeople.org/fedora-gcc13-$arch/',
            'id': 'https_jakub_fedorapeople_org_fedora_gcc13_arch',
            'name': 'Additional repo https_jakub_fedorapeople_org_fedora_gcc13_arch'}],
 'sandbox': 'jakub/gcc-13-test--jakub',
 'source_json': {},
 'source_type': None,
 'submitter': 'jakub',
 'tags': [],
 'task_id': '5186146-fedora-rawhide-i386',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/samtools /var/lib/copr-rpmbuild/workspace/workdir-o77d_z3o/samtools --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/samtools', '/var/lib/copr-rpmbuild/workspace/workdir-o77d_z3o/samtools', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-o77d_z3o/samtools'...

Running: git checkout 056da70e5f337d47b3d83e864e61d924863e654a

cmd: ['git', 'checkout', '056da70e5f337d47b3d83e864e61d924863e654a']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-o77d_z3o/samtools
rc: 0
stdout: 
stderr: Note: switching to '056da70e5f337d47b3d83e864e61d924863e654a'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 056da70 automatic import of samtools

Running: copr-distgit-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-o77d_z3o/samtools
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading samtools-1.15.1.tar.bz2
INFO: Calling: curl -H Pragma: -o samtools-1.15.1.tar.bz2 --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jakub/gcc-13-test/samtools/samtools-1.15.1.tar.bz2/md5/b71d1aa1de9749773b1a04bf54281ca0/samtools-1.15.1.tar.bz2
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 7648k  100 7648k    0     0  30.1M      0 --:--:-- --:--:-- --:--:-- 30.2M
INFO: Reading stdout from command: md5sum samtools-1.15.1.tar.bz2

Running (timeout=115200): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-o77d_z3o/samtools/samtools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-o77d_z3o/samtools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1672304886.477783 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-o77d_z3o/samtools/samtools.spec)  Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1672304886.477783/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start(bootstrap): dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  38 MB/s |  36 MB     00:00    
Additional repo https_jakub_fedorapeople_org_fe 326 kB/s |  86 kB     00:00    
local                                            70 MB/s |  60 MB     00:00    
Last metadata expiration check: 0:00:01 ago on Thu Dec 29 09:08:17 2022.
Dependencies resolved.
=========================================================================================================================
 Package                         Arch    Version                    Repository                                       Size
=========================================================================================================================
Installing:
 dnf                             noarch  4.14.0-1.fc38              local                                           469 k
 dnf-plugins-core                noarch  4.3.1-1.fc38               local                                            34 k
Installing dependencies:
 alternatives                    i686    1.21-1.fc38                copr_base                                        39 k
 audit-libs                      i686    3.0.9-2.fc38               local                                           122 k
 basesystem                      noarch  11-14.fc37                 local                                           7.0 k
 bash                            i686    5.2.9-3.fc38               copr_base                                       1.8 M
 bzip2-libs                      i686    1.0.8-12.fc38              copr_base                                        42 k
 ca-certificates                 noarch  2022.2.54-5.fc37           local                                           829 k
 coreutils                       i686    9.1-8.fc38                 copr_base                                       1.1 M
 coreutils-common                i686    9.1-8.fc38                 copr_base                                       2.0 M
 crypto-policies                 noarch  20221215-1.gita4c31a3.fc38 local                                            63 k
 curl                            i686    7.87.0-1.fc38              copr_base                                       347 k
 cyrus-sasl-lib                  i686    2.1.28-8.fc38              copr_base                                       858 k
 dbus-libs                       i686    1:1.14.4-1.fc38            copr_base                                       167 k
 dnf-data                        noarch  4.14.0-1.fc38              local                                            43 k
 elfutils-default-yama-scope     noarch  0.188-3.fc38               copr_base                                        16 k
 elfutils-libelf                 i686    0.188-3.fc38               copr_base                                       204 k
 elfutils-libs                   i686    0.188-3.fc38               copr_base                                       287 k
 expat                           i686    2.5.0-1.fc38               copr_base                                       115 k
 fedora-gpg-keys                 noarch  38-0.3                     local                                           115 k
 fedora-release                  noarch  38-0.6                     local                                            11 k
 fedora-release-common           noarch  38-0.6                     local                                            21 k
 fedora-release-identity-basic   noarch  38-0.6                     local                                            11 k
 fedora-repos                    noarch  38-0.3                     local                                            10 k
 fedora-repos-rawhide            noarch  38-0.3                     local                                           9.7 k
 file-libs                       i686    5.42-4.fc38                copr_base                                       684 k
 filesystem                      i686    3.18-2.fc37                local                                           1.1 M
 findutils                       i686    1:4.9.0-2.fc38             copr_base                                       494 k
 gawk                            i686    5.1.1-4.fc38               copr_base                                       1.0 M
 gdbm-libs                       i686    1:1.23-2.fc38              copr_base                                        60 k
 glib2                           i686    2.74.1-2.fc38              copr_base                                       2.8 M
 glibc                           i686    2.36.9000-19.fc38          local                                           1.9 M
 glibc-common                    i686    2.36.9000-19.fc38          local                                           315 k
 glibc-minimal-langpack          i686    2.36.9000-19.fc38          local                                            30 k
 gmp                             i686    1:6.2.1-3.fc38             copr_base                                       306 k
 gnupg2                          i686    2.3.8-1.fc38               copr_base                                       2.6 M
 gnutls                          i686    3.7.8-9.fc38               copr_base                                       1.1 M
 gpgme                           i686    1.17.1-3.fc38              copr_base                                       219 k
 grep                            i686    3.8-1.fc38                 copr_base                                       289 k
 ima-evm-utils                   i686    1.4-6.fc38                 copr_base                                        63 k
 json-c                          i686    0.16-3.fc38                copr_base                                        44 k
 keyutils-libs                   i686    1.6.1-5.fc38               copr_base                                        32 k
 krb5-libs                       i686    1.20.1-3.fc38              copr_base                                       764 k
 libacl                          i686    2.3.1-4.fc38               copr_base                                        25 k
 libarchive                      i686    3.6.1-3.fc38               copr_base                                       442 k
 libassuan                       i686    2.5.5-5.fc38               copr_base                                        69 k
 libattr                         i686    2.5.1-5.fc38               copr_base                                        19 k
 libb2                           i686    0.98.1-7.fc38              copr_base                                        29 k
 libblkid                        i686    2.38.1-3.fc38              local                                           116 k
 libbrotli                       i686    1.0.9-9.fc38               copr_base                                       318 k
 libcap                          i686    2.48-5.fc38                copr_base                                        69 k
 libcap-ng                       i686    0.8.3-4.fc38               copr_base                                        33 k
 libcom_err                      i686    1.46.5-3.fc37              local                                            26 k
 libcomps                        i686    0.1.18-4.fc38              copr_base                                        84 k
 libcurl                         i686    7.87.0-1.fc38              copr_base                                       327 k
 libdnf                          i686    0.68.0-1.fc38              copr_base                                       713 k
 libevent                        i686    2.1.12-7.fc38              copr_base                                       277 k
 libffi                          i686    3.4.4-1.fc38               copr_base                                        36 k
 libfsverity                     i686    1.4-8.fc38                 copr_base                                        21 k
 libgcc                          i686    13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  101 k
 libgcrypt                       i686    1.10.1-6.fc38              copr_base                                       479 k
 libgomp                         i686    13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  304 k
 libgpg-error                    i686    1.46-1.fc38                copr_base                                       226 k
 libidn2                         i686    2.3.4-1.fc38               copr_base                                       155 k
 libksba                         i686    1.6.3-1.fc38               copr_base                                       161 k
 libmodulemd                     i686    2.14.0-4.fc38              copr_base                                       242 k
 libmount                        i686    2.38.1-3.fc38              local                                           141 k
 libnghttp2                      i686    1.51.0-1.fc38              copr_base                                        81 k
 libnsl2                         i686    2.0.0-4.fc38               copr_base                                        32 k
 libpsl                          i686    0.21.2-1.fc38              local                                            66 k
 librepo                         i686    1.15.1-1.fc38              copr_base                                       102 k
 libreport-filesystem            noarch  2.17.6-1.fc38              copr_base                                        14 k
 libselinux                      i686    3.5-0.rc1.1.fc38           local                                            91 k
 libsemanage                     i686    3.5-0.rc1.1.fc38           local                                           128 k
 libsepol                        i686    3.5-0.rc1.1.fc38           local                                           336 k
 libsigsegv                      i686    2.14-3.fc38                copr_base                                        28 k
 libsmartcols                    i686    2.38.1-3.fc38              local                                            65 k
 libsolv                         i686    0.7.22-3.fc38              copr_base                                       426 k
 libssh                          i686    0.10.4-2.fc38              copr_base                                       223 k
 libssh-config                   noarch  0.10.4-2.fc38              copr_base                                       9.3 k
 libstdc++                       i686    13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  857 k
 libtasn1                        i686    4.19.0-1.fc38              copr_base                                        77 k
 libtirpc                        i686    1.3.3-0.fc38               copr_base                                       101 k
 libunistring                    i686    1.0-2.fc38                 copr_base                                       549 k
 libuuid                         i686    2.38.1-3.fc38              local                                            28 k
 libverto                        i686    0.3.2-4.fc38               copr_base                                        22 k
 libxcrypt                       i686    4.4.33-5.fc38              copr_base                                       124 k
 libxml2                         i686    2.10.3-2.fc38              copr_base                                       744 k
 libyaml                         i686    0.2.5-8.fc38               copr_base                                        62 k
 libzstd                         i686    1.5.2-3.fc37               local                                           274 k
 lua-libs                        i686    5.4.4-6.fc38               copr_base                                       149 k
 lz4-libs                        i686    1.9.3-5.fc38               copr_base                                        72 k
 mpdecimal                       i686    2.5.1-4.fc38               copr_base                                       107 k
 mpfr                            i686    4.1.1-2.fc38               copr_base                                       637 k
 ncurses-base                    noarch  6.3-5.20221126.fc38        copr_base                                        62 k
 ncurses-libs                    i686    6.3-5.20221126.fc38        copr_base                                       351 k
 nettle                          i686    3.8-2.fc38                 copr_base                                       426 k
 npth                            i686    1.6-10.fc38                copr_base                                        25 k
 openldap                        i686    2.6.3-1.fc38               copr_base                                       274 k
 openssl-libs                    i686    1:3.0.5-6.fc38             copr_base                                       2.1 M
 p11-kit                         i686    0.24.1-5.fc38              copr_base                                       335 k
 p11-kit-trust                   i686    0.24.1-5.fc38              copr_base                                       136 k
 pcre2                           i686    10.40-1.fc38.1             copr_base                                       235 k
 pcre2-syntax                    noarch  10.40-1.fc38.1             copr_base                                       143 k
 popt                            i686    1.19-1.fc38                copr_base                                        62 k
 publicsuffix-list-dafsa         noarch  20221208-1.fc38            local                                            59 k
 python-pip-wheel                noarch  22.3.1-1.fc38              local                                           1.4 M
 python-setuptools-wheel         noarch  65.5.1-1.fc38              local                                           715 k
 python3                         i686    3.11.1-1.fc38              copr_base                                        28 k
 python3-dateutil                noarch  1:2.8.2-4.fc37             local                                           350 k
 python3-dbus                    i686    1.3.2-1.fc38               copr_base                                       151 k
 python3-distro                  noarch  1.8.0-1.fc38               local                                            45 k
 python3-dnf                     noarch  4.14.0-1.fc38              local                                           567 k
 python3-dnf-plugins-core        noarch  4.3.1-1.fc38               local                                           263 k
 python3-gpg                     i686    1.17.1-3.fc38              copr_base                                       277 k
 python3-hawkey                  i686    0.68.0-1.fc38              copr_base                                       113 k
 python3-libcomps                i686    0.1.18-4.fc38              copr_base                                        52 k
 python3-libdnf                  i686    0.68.0-1.fc38              copr_base                                       838 k
 python3-libs                    i686    3.11.1-1.fc38              copr_base                                       9.3 M
 python3-rpm                     i686    4.18.0-8.fc38              copr_base                                        96 k
 python3-six                     noarch  1.16.0-8.fc37              local                                            42 k
 readline                        i686    8.2-2.fc38                 copr_base                                       219 k
 rpm                             i686    4.18.0-8.fc38              copr_base                                       541 k
 rpm-build-libs                  i686    4.18.0-8.fc38              copr_base                                       102 k
 rpm-libs                        i686    4.18.0-8.fc38              copr_base                                       342 k
 rpm-sequoia                     i686    1.2.0-1.fc38               copr_base                                       914 k
 rpm-sign-libs                   i686    4.18.0-8.fc38              copr_base                                        28 k
 sed                             i686    4.8-11.fc37                local                                           300 k
 setup                           noarch  2.14.3-1.fc38              local                                           146 k
 shadow-utils                    i686    2:4.13-3.fc38              local                                           1.2 M
 sqlite-libs                     i686    3.40.0-1.fc38              local                                           705 k
 systemd-libs                    i686    252.4-598.fc38             local                                           662 k
 tpm2-tss                        i686    4.0.0-0.1.rc2.fc38         local                                           603 k
 tzdata                          noarch  2022g-1.fc38               local                                           432 k
 xz-libs                         i686    5.2.9-1.fc38               local                                           101 k
 zchunk-libs                     i686    1.2.3-1.fc38               local                                            54 k
 zlib                            i686    1.2.13-1.fc38              local                                            92 k

Transaction Summary
=========================================================================================================================
Install  137 Packages

Total download size: 57 M
Installed size: 198 M
Downloading Packages:
(1/137): bzip2-libs-1.0.8-12.fc38.i686.rpm      450 kB/s |  42 kB     00:00    
(2/137): alternatives-1.21-1.fc38.i686.rpm      396 kB/s |  39 kB     00:00    
(3/137): coreutils-9.1-8.fc38.i686.rpm           13 MB/s | 1.1 MB     00:00    
(4/137): coreutils-common-9.1-8.fc38.i686.rpm    13 MB/s | 2.0 MB     00:00    
(5/137): curl-7.87.0-1.fc38.i686.rpm            4.3 MB/s | 347 kB     00:00    
(6/137): bash-5.2.9-3.fc38.i686.rpm             6.6 MB/s | 1.8 MB     00:00    
(7/137): dbus-libs-1.14.4-1.fc38.i686.rpm       4.7 MB/s | 167 kB     00:00    
(8/137): cyrus-sasl-lib-2.1.28-8.fc38.i686.rpm   15 MB/s | 858 kB     00:00    
(9/137): elfutils-default-yama-scope-0.188-3.fc 381 kB/s |  16 kB     00:00    
(10/137): elfutils-libelf-0.188-3.fc38.i686.rpm 6.8 MB/s | 204 kB     00:00    
(11/137): elfutils-libs-0.188-3.fc38.i686.rpm    10 MB/s | 287 kB     00:00    
(12/137): expat-2.5.0-1.fc38.i686.rpm           3.7 MB/s | 115 kB     00:00    
(13/137): file-libs-5.42-4.fc38.i686.rpm         14 MB/s | 684 kB     00:00    
(14/137): findutils-4.9.0-2.fc38.i686.rpm        11 MB/s | 494 kB     00:00    
(15/137): gawk-5.1.1-4.fc38.i686.rpm             14 MB/s | 1.0 MB     00:00    
(16/137): gdbm-libs-1.23-2.fc38.i686.rpm        1.2 MB/s |  60 kB     00:00    
(17/137): gmp-6.2.1-3.fc38.i686.rpm             4.0 MB/s | 306 kB     00:00    
(18/137): glib2-2.74.1-2.fc38.i686.rpm           16 MB/s | 2.8 MB     00:00    
(19/137): gnutls-3.7.8-9.fc38.i686.rpm          7.7 MB/s | 1.1 MB     00:00    
(20/137): gnupg2-2.3.8-1.fc38.i686.rpm           12 MB/s | 2.6 MB     00:00    
(21/137): gpgme-1.17.1-3.fc38.i686.rpm          2.8 MB/s | 219 kB     00:00    
(22/137): grep-3.8-1.fc38.i686.rpm              8.6 MB/s | 289 kB     00:00    
(23/137): ima-evm-utils-1.4-6.fc38.i686.rpm     2.2 MB/s |  63 kB     00:00    
(24/137): json-c-0.16-3.fc38.i686.rpm           1.6 MB/s |  44 kB     00:00    
(25/137): keyutils-libs-1.6.1-5.fc38.i686.rpm   1.3 MB/s |  32 kB     00:00    
(26/137): krb5-libs-1.20.1-3.fc38.i686.rpm       15 MB/s | 764 kB     00:00    
(27/137): libacl-2.3.1-4.fc38.i686.rpm          545 kB/s |  25 kB     00:00    
(28/137): libarchive-3.6.1-3.fc38.i686.rpm       11 MB/s | 442 kB     00:00    
(29/137): libassuan-2.5.5-5.fc38.i686.rpm       2.4 MB/s |  69 kB     00:00    
(30/137): libattr-2.5.1-5.fc38.i686.rpm         653 kB/s |  19 kB     00:00    
(31/137): libb2-0.98.1-7.fc38.i686.rpm          1.2 MB/s |  29 kB     00:00    
(32/137): libcap-2.48-5.fc38.i686.rpm           2.6 MB/s |  69 kB     00:00    
(33/137): libbrotli-1.0.9-9.fc38.i686.rpm       8.8 MB/s | 318 kB     00:00    
(34/137): libcap-ng-0.8.3-4.fc38.i686.rpm       1.2 MB/s |  33 kB     00:00    
(35/137): libcomps-0.1.18-4.fc38.i686.rpm       3.1 MB/s |  84 kB     00:00    
(36/137): libdnf-0.68.0-1.fc38.i686.rpm          15 MB/s | 713 kB     00:00    
(37/137): libcurl-7.87.0-1.fc38.i686.rpm        5.7 MB/s | 327 kB     00:00    
(38/137): libevent-2.1.12-7.fc38.i686.rpm       5.7 MB/s | 277 kB     00:00    
(39/137): libffi-3.4.4-1.fc38.i686.rpm          1.2 MB/s |  36 kB     00:00    
(40/137): libfsverity-1.4-8.fc38.i686.rpm       769 kB/s |  21 kB     00:00    
(41/137): libgcrypt-1.10.1-6.fc38.i686.rpm       12 MB/s | 479 kB     00:00    
(42/137): libgpg-error-1.46-1.fc38.i686.rpm     6.0 MB/s | 226 kB     00:00    
(43/137): libidn2-2.3.4-1.fc38.i686.rpm         4.4 MB/s | 155 kB     00:00    
(44/137): libksba-1.6.3-1.fc38.i686.rpm         5.3 MB/s | 161 kB     00:00    
(45/137): libmodulemd-2.14.0-4.fc38.i686.rpm    7.2 MB/s | 242 kB     00:00    
(46/137): libnghttp2-1.51.0-1.fc38.i686.rpm     2.6 MB/s |  81 kB     00:00    
(47/137): libnsl2-2.0.0-4.fc38.i686.rpm         1.0 MB/s |  32 kB     00:00    
(48/137): librepo-1.15.1-1.fc38.i686.rpm        3.8 MB/s | 102 kB     00:00    
(49/137): libreport-filesystem-2.17.6-1.fc38.no 583 kB/s |  14 kB     00:00    
(50/137): libsigsegv-2.14-3.fc38.i686.rpm       1.1 MB/s |  28 kB     00:00    
(51/137): libsolv-0.7.22-3.fc38.i686.rpm         12 MB/s | 426 kB     00:00    
(52/137): libssh-0.10.4-2.fc38.i686.rpm         5.5 MB/s | 223 kB     00:00    
(53/137): libssh-config-0.10.4-2.fc38.noarch.rp 342 kB/s | 9.3 kB     00:00    
(54/137): libtasn1-4.19.0-1.fc38.i686.rpm       2.9 MB/s |  77 kB     00:00    
(55/137): libtirpc-1.3.3-0.fc38.i686.rpm        3.7 MB/s | 101 kB     00:00    
(56/137): libunistring-1.0-2.fc38.i686.rpm       13 MB/s | 549 kB     00:00    
(57/137): libverto-0.3.2-4.fc38.i686.rpm        773 kB/s |  22 kB     00:00    
(58/137): libxcrypt-4.4.33-5.fc38.i686.rpm      4.0 MB/s | 124 kB     00:00    
(59/137): libxml2-2.10.3-2.fc38.i686.rpm         16 MB/s | 744 kB     00:00    
(60/137): libyaml-0.2.5-8.fc38.i686.rpm         1.4 MB/s |  62 kB     00:00    
(61/137): lua-libs-5.4.4-6.fc38.i686.rpm        3.7 MB/s | 149 kB     00:00    
(62/137): lz4-libs-1.9.3-5.fc38.i686.rpm        2.5 MB/s |  72 kB     00:00    
(63/137): mpdecimal-2.5.1-4.fc38.i686.rpm       3.5 MB/s | 107 kB     00:00    
(64/137): mpfr-4.1.1-2.fc38.i686.rpm             14 MB/s | 637 kB     00:00    
(65/137): ncurses-base-6.3-5.20221126.fc38.noar 2.0 MB/s |  62 kB     00:00    
(66/137): ncurses-libs-6.3-5.20221126.fc38.i686 9.1 MB/s | 351 kB     00:00    
(67/137): nettle-3.8-2.fc38.i686.rpm             10 MB/s | 426 kB     00:00    
(68/137): npth-1.6-10.fc38.i686.rpm             753 kB/s |  25 kB     00:00    
(69/137): openldap-2.6.3-1.fc38.i686.rpm        7.3 MB/s | 274 kB     00:00    
(70/137): p11-kit-0.24.1-5.fc38.i686.rpm        6.1 MB/s | 335 kB     00:00    
(71/137): openssl-libs-3.0.5-6.fc38.i686.rpm     20 MB/s | 2.1 MB     00:00    
(72/137): p11-kit-trust-0.24.1-5.fc38.i686.rpm  1.4 MB/s | 136 kB     00:00    
(73/137): pcre2-10.40-1.fc38.1.i686.rpm         3.9 MB/s | 235 kB     00:00    
(74/137): pcre2-syntax-10.40-1.fc38.1.noarch.rp 4.2 MB/s | 143 kB     00:00    
(75/137): popt-1.19-1.fc38.i686.rpm             1.8 MB/s |  62 kB     00:00    
(76/137): python3-3.11.1-1.fc38.i686.rpm        992 kB/s |  28 kB     00:00    
(77/137): python3-dbus-1.3.2-1.fc38.i686.rpm    5.3 MB/s | 151 kB     00:00    
(78/137): python3-gpg-1.17.1-3.fc38.i686.rpm    7.8 MB/s | 277 kB     00:00    
(79/137): python3-hawkey-0.68.0-1.fc38.i686.rpm 3.2 MB/s | 113 kB     00:00    
(80/137): python3-libcomps-0.1.18-4.fc38.i686.r 1.9 MB/s |  52 kB     00:00    
(81/137): python3-libdnf-0.68.0-1.fc38.i686.rpm  17 MB/s | 838 kB     00:00    
(82/137): python3-rpm-4.18.0-8.fc38.i686.rpm    796 kB/s |  96 kB     00:00    
(83/137): readline-8.2-2.fc38.i686.rpm          1.5 MB/s | 219 kB     00:00    
(84/137): rpm-4.18.0-8.fc38.i686.rpm            2.9 MB/s | 541 kB     00:00    
(85/137): rpm-build-libs-4.18.0-8.fc38.i686.rpm 687 kB/s | 102 kB     00:00    
(86/137): python3-libs-3.11.1-1.fc38.i686.rpm    27 MB/s | 9.3 MB     00:00    
(87/137): rpm-libs-4.18.0-8.fc38.i686.rpm       7.3 MB/s | 342 kB     00:00    
(88/137): rpm-sequoia-1.2.0-1.fc38.i686.rpm      16 MB/s | 914 kB     00:00    
(89/137): rpm-sign-libs-4.18.0-8.fc38.i686.rpm  589 kB/s |  28 kB     00:00    
(90/137): libgcc-13.0.0-0.4.fc38.i686.rpm       371 kB/s | 101 kB     00:00    
(91/137): libgomp-13.0.0-0.4.fc38.i686.rpm      1.1 MB/s | 304 kB     00:00    
(92/137): libstdc++-13.0.0-0.4.fc38.i686.rpm    2.4 MB/s | 857 kB     00:00    
(93/137): basesystem-11-14.fc37.noarch.rpm       91 kB/s | 7.0 kB     00:00    
(94/137): crypto-policies-20221215-1.gita4c31a3 1.6 MB/s |  63 kB     00:00    
(95/137): audit-libs-3.0.9-2.fc38.i686.rpm      765 kB/s | 122 kB     00:00    
(96/137): dnf-data-4.14.0-1.fc38.noarch.rpm     3.5 MB/s |  43 kB     00:00    
(97/137): dnf-plugins-core-4.3.1-1.fc38.noarch. 2.1 MB/s |  34 kB     00:00    
(98/137): dnf-4.14.0-1.fc38.noarch.rpm           11 MB/s | 469 kB     00:00    
(99/137): fedora-release-38-0.6.noarch.rpm      791 kB/s |  11 kB     00:00    
(100/137): fedora-gpg-keys-38-0.3.noarch.rpm    4.3 MB/s | 115 kB     00:00    
(101/137): fedora-release-common-38-0.6.noarch. 1.9 MB/s |  21 kB     00:00    
(102/137): fedora-release-identity-basic-38-0.6 918 kB/s |  11 kB     00:00    
(103/137): ca-certificates-2022.2.54-5.fc37.noa 6.1 MB/s | 829 kB     00:00    
(104/137): fedora-repos-38-0.3.noarch.rpm       787 kB/s |  10 kB     00:00    
(105/137): fedora-repos-rawhide-38-0.3.noarch.r 839 kB/s | 9.7 kB     00:00    
(106/137): filesystem-3.18-2.fc37.i686.rpm       26 MB/s | 1.1 MB     00:00    
(107/137): glibc-common-2.36.9000-19.fc38.i686. 7.3 MB/s | 315 kB     00:00    
(108/137): glibc-minimal-langpack-2.36.9000-19. 1.0 MB/s |  30 kB     00:00    
(109/137): glibc-2.36.9000-19.fc38.i686.rpm      25 MB/s | 1.9 MB     00:00    
(110/137): libblkid-2.38.1-3.fc38.i686.rpm      3.5 MB/s | 116 kB     00:00    
(111/137): libcom_err-1.46.5-3.fc37.i686.rpm    1.0 MB/s |  26 kB     00:00    
(112/137): libmount-2.38.1-3.fc38.i686.rpm      5.0 MB/s | 141 kB     00:00    
(113/137): libpsl-0.21.2-1.fc38.i686.rpm        2.2 MB/s |  66 kB     00:00    
(114/137): libselinux-3.5-0.rc1.1.fc38.i686.rpm 3.4 MB/s |  91 kB     00:00    
(115/137): libsemanage-3.5-0.rc1.1.fc38.i686.rp 4.8 MB/s | 128 kB     00:00    
(116/137): libsepol-3.5-0.rc1.1.fc38.i686.rpm    10 MB/s | 336 kB     00:00    
(117/137): libsmartcols-2.38.1-3.fc38.i686.rpm  2.4 MB/s |  65 kB     00:00    
(118/137): libuuid-2.38.1-3.fc38.i686.rpm       1.1 MB/s |  28 kB     00:00    
(119/137): libzstd-1.5.2-3.fc37.i686.rpm        8.7 MB/s | 274 kB     00:00    
(120/137): publicsuffix-list-dafsa-20221208-1.f 2.2 MB/s |  59 kB     00:00    
(121/137): python3-dateutil-2.8.2-4.fc37.noarch 8.1 MB/s | 350 kB     00:00    
(122/137): python-pip-wheel-22.3.1-1.fc38.noarc  19 MB/s | 1.4 MB     00:00    
(123/137): python-setuptools-wheel-65.5.1-1.fc3 8.6 MB/s | 715 kB     00:00    
(124/137): python3-distro-1.8.0-1.fc38.noarch.r 1.3 MB/s |  45 kB     00:00    
(125/137): python3-dnf-4.14.0-1.fc38.noarch.rpm  13 MB/s | 567 kB     00:00    
(126/137): python3-dnf-plugins-core-4.3.1-1.fc3 6.9 MB/s | 263 kB     00:00    
(127/137): python3-six-1.16.0-8.fc37.noarch.rpm 1.2 MB/s |  42 kB     00:00    
(128/137): sed-4.8-11.fc37.i686.rpm             8.2 MB/s | 300 kB     00:00    
(129/137): setup-2.14.3-1.fc38.noarch.rpm       4.5 MB/s | 146 kB     00:00    
(130/137): sqlite-libs-3.40.0-1.fc38.i686.rpm    14 MB/s | 705 kB     00:00    
(131/137): shadow-utils-4.13-3.fc38.i686.rpm     15 MB/s | 1.2 MB     00:00    
(132/137): systemd-libs-252.4-598.fc38.i686.rpm 8.2 MB/s | 662 kB     00:00    
(133/137): tpm2-tss-4.0.0-0.1.rc2.fc38.i686.rpm  13 MB/s | 603 kB     00:00    
(134/137): tzdata-2022g-1.fc38.noarch.rpm       9.2 MB/s | 432 kB     00:00    
(135/137): xz-libs-5.2.9-1.fc38.i686.rpm        2.7 MB/s | 101 kB     00:00    
(136/137): zchunk-libs-1.2.3-1.fc38.i686.rpm    1.5 MB/s |  54 kB     00:00    
(137/137): zlib-1.2.13-1.fc38.i686.rpm          2.7 MB/s |  92 kB     00:00    
--------------------------------------------------------------------------------
Total                                            21 MB/s |  57 MB     00:02     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-2.fc37.i686                            1/1 
  Preparing        :                                                        1/1 
  Installing       : crypto-policies-20221215-1.gita4c31a3.fc38.noarc     1/137 
  Running scriptlet: crypto-policies-20221215-1.gita4c31a3.fc38.noarc     1/137 
  Installing       : tzdata-2022g-1.fc38.noarch                           2/137 
  Installing       : fedora-release-identity-basic-38-0.6.noarch          3/137 
  Installing       : python-setuptools-wheel-65.5.1-1.fc38.noarch         4/137 
  Installing       : publicsuffix-list-dafsa-20221208-1.fc38.noarch       5/137 
  Installing       : fedora-gpg-keys-38-0.3.noarch                        6/137 
  Installing       : fedora-release-38-0.6.noarch                         7/137 
  Installing       : fedora-release-common-38-0.6.noarch                  8/137 
  Installing       : fedora-repos-rawhide-38-0.3.noarch                   9/137 
  Installing       : fedora-repos-38-0.3.noarch                          10/137 
  Installing       : setup-2.14.3-1.fc38.noarch                          11/137 
  Running scriptlet: setup-2.14.3-1.fc38.noarch                          11/137 
  Installing       : filesystem-3.18-2.fc37.i686                         12/137 
  Installing       : basesystem-11-14.fc37.noarch                        13/137 
  Installing       : pcre2-syntax-10.40-1.fc38.1.noarch                  14/137 
  Installing       : ncurses-base-6.3-5.20221126.fc38.noarch             15/137 
  Installing       : libssh-config-0.10.4-2.fc38.noarch                  16/137 
  Installing       : libreport-filesystem-2.17.6-1.fc38.noarch           17/137 
  Installing       : dnf-data-4.14.0-1.fc38.noarch                       18/137 
warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew

  Installing       : coreutils-common-9.1-8.fc38.i686                    19/137 
  Installing       : libgcc-13.0.0-0.4.fc38.i686                         20/137 
  Running scriptlet: libgcc-13.0.0-0.4.fc38.i686                         20/137 
  Installing       : ncurses-libs-6.3-5.20221126.fc38.i686               21/137 
  Running scriptlet: glibc-2.36.9000-19.fc38.i686                        22/137 
  Installing       : glibc-2.36.9000-19.fc38.i686                        22/137 
  Running scriptlet: glibc-2.36.9000-19.fc38.i686                        22/137 
  Installing       : bash-5.2.9-3.fc38.i686                              23/137 
  Running scriptlet: bash-5.2.9-3.fc38.i686                              23/137 
  Installing       : glibc-common-2.36.9000-19.fc38.i686                 24/137 
  Installing       : glibc-minimal-langpack-2.36.9000-19.fc38.i686       25/137 
  Installing       : zlib-1.2.13-1.fc38.i686                             26/137 
  Installing       : bzip2-libs-1.0.8-12.fc38.i686                       27/137 
  Installing       : xz-libs-5.2.9-1.fc38.i686                           28/137 
  Installing       : libzstd-1.5.2-3.fc37.i686                           29/137 
  Installing       : sqlite-libs-3.40.0-1.fc38.i686                      30/137 
  Installing       : gmp-1:6.2.1-3.fc38.i686                             31/137 
  Installing       : libcap-2.48-5.fc38.i686                             32/137 
  Installing       : libgpg-error-1.46-1.fc38.i686                       33/137 
  Installing       : popt-1.19-1.fc38.i686                               34/137 
  Installing       : libxml2-2.10.3-2.fc38.i686                          35/137 
  Installing       : lua-libs-5.4.4-6.fc38.i686                          36/137 
  Installing       : libstdc++-13.0.0-0.4.fc38.i686                      37/137 
  Installing       : libuuid-2.38.1-3.fc38.i686                          38/137 
  Installing       : elfutils-libelf-0.188-3.fc38.i686                   39/137 
  Installing       : file-libs-5.42-4.fc38.i686                          40/137 
  Installing       : libattr-2.5.1-5.fc38.i686                           41/137 
  Installing       : libacl-2.3.1-4.fc38.i686                            42/137 
  Installing       : libffi-3.4.4-1.fc38.i686                            43/137 
  Installing       : p11-kit-0.24.1-5.fc38.i686                          44/137 
  Installing       : libunistring-1.0-2.fc38.i686                        45/137 
  Installing       : libidn2-2.3.4-1.fc38.i686                           46/137 
  Installing       : libxcrypt-4.4.33-5.fc38.i686                        47/137 
  Installing       : pcre2-10.40-1.fc38.1.i686                           48/137 
  Installing       : readline-8.2-2.fc38.i686                            49/137 
  Installing       : libassuan-2.5.5-5.fc38.i686                         50/137 
  Installing       : nettle-3.8-2.fc38.i686                              51/137 
  Installing       : rpm-sequoia-1.2.0-1.fc38.i686                       52/137 
  Installing       : expat-2.5.0-1.fc38.i686                             53/137 
  Installing       : gdbm-libs-1:1.23-2.fc38.i686                        54/137 
  Installing       : json-c-0.16-3.fc38.i686                             55/137 
  Installing       : keyutils-libs-1.6.1-5.fc38.i686                     56/137 
  Installing       : libtasn1-4.19.0-1.fc38.i686                         57/137 
  Installing       : lz4-libs-1.9.3-5.fc38.i686                          58/137 
  Installing       : libgomp-13.0.0-0.4.fc38.i686                        59/137 
  Installing       : libcom_err-1.46.5-3.fc37.i686                       60/137 
  Installing       : libsepol-3.5-0.rc1.1.fc38.i686                      61/137 
  Installing       : libselinux-3.5-0.rc1.1.fc38.i686                    62/137 
  Installing       : sed-4.8-11.fc37.i686                                63/137 
  Installing       : libsmartcols-2.38.1-3.fc38.i686                     64/137 
  Installing       : elfutils-default-yama-scope-0.188-3.fc38.noarch     65/137 
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  Installing       : elfutils-libs-0.188-3.fc38.i686                     66/137 
  Installing       : findutils-1:4.9.0-2.fc38.i686                       67/137 
  Installing       : libb2-0.98.1-7.fc38.i686                            68/137 
  Installing       : systemd-libs-252.4-598.fc38.i686                    69/137 
  Installing       : dbus-libs-1:1.14.4-1.fc38.i686                      70/137 
  Installing       : cyrus-sasl-lib-2.1.28-8.fc38.i686                   71/137 
  Installing       : libcomps-0.1.18-4.fc38.i686                         72/137 
  Installing       : grep-3.8-1.fc38.i686                                73/137 
  Installing       : libpsl-0.21.2-1.fc38.i686                           74/137 
  Installing       : libblkid-2.38.1-3.fc38.i686                         75/137 
  Installing       : libmount-2.38.1-3.fc38.i686                         76/137 
  Installing       : mpdecimal-2.5.1-4.fc38.i686                         77/137 
  Installing       : libgcrypt-1.10.1-6.fc38.i686                        78/137 
  Installing       : libksba-1.6.3-1.fc38.i686                           79/137 
  Installing       : mpfr-4.1.1-2.fc38.i686                              80/137 
  Installing       : alternatives-1.21-1.fc38.i686                       81/137 
  Installing       : p11-kit-trust-0.24.1-5.fc38.i686                    82/137 
  Running scriptlet: p11-kit-trust-0.24.1-5.fc38.i686                    82/137 
  Installing       : openssl-libs-1:3.0.5-6.fc38.i686                    83/137 
  Installing       : coreutils-9.1-8.fc38.i686                           84/137 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch             85/137 
  Installing       : ca-certificates-2022.2.54-5.fc37.noarch             85/137 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch             85/137 
  Installing       : libfsverity-1.4-8.fc38.i686                         86/137 
  Installing       : zchunk-libs-1.2.3-1.fc38.i686                       87/137 
  Installing       : gnutls-3.7.8-9.fc38.i686                            88/137 
  Installing       : python-pip-wheel-22.3.1-1.fc38.noarch               89/137 
  Installing       : glib2-2.74.1-2.fc38.i686                            90/137 
  Installing       : libarchive-3.6.1-3.fc38.i686                        91/137 
  Installing       : libevent-2.1.12-7.fc38.i686                         92/137 
  Installing       : openldap-2.6.3-1.fc38.i686                          93/137 
  Installing       : libbrotli-1.0.9-9.fc38.i686                         94/137 
  Installing       : libcap-ng-0.8.3-4.fc38.i686                         95/137 
  Installing       : audit-libs-3.0.9-2.fc38.i686                        96/137 
  Installing       : rpm-libs-4.18.0-8.fc38.i686                         97/137 
  Installing       : libsolv-0.7.22-3.fc38.i686                          98/137 
  Installing       : rpm-build-libs-4.18.0-8.fc38.i686                   99/137 
  Installing       : libsemanage-3.5-0.rc1.1.fc38.i686                  100/137 
  Installing       : shadow-utils-2:4.13-3.fc38.i686                    101/137 
  Installing       : libnghttp2-1.51.0-1.fc38.i686                      102/137 
  Installing       : libsigsegv-2.14-3.fc38.i686                        103/137 
  Installing       : gawk-5.1.1-4.fc38.i686                             104/137 
  Installing       : libverto-0.3.2-4.fc38.i686                         105/137 
  Installing       : krb5-libs-1.20.1-3.fc38.i686                       106/137 
  Installing       : libtirpc-1.3.3-0.fc38.i686                         107/137 
  Installing       : libnsl2-2.0.0-4.fc38.i686                          108/137 
  Installing       : python3-3.11.1-1.fc38.i686                         109/137 
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  Installing       : python3-distro-1.8.0-1.fc38.noarch                 111/137 
  Installing       : python3-six-1.16.0-8.fc37.noarch                   112/137 
  Installing       : python3-dbus-1.3.2-1.fc38.i686                     113/137 
  Installing       : python3-dateutil-1:2.8.2-4.fc37.noarch             114/137 
  Installing       : python3-libcomps-0.1.18-4.fc38.i686                115/137 
  Installing       : libssh-0.10.4-2.fc38.i686                          116/137 
  Installing       : libcurl-7.87.0-1.fc38.i686                         117/137 
  Installing       : curl-7.87.0-1.fc38.i686                            118/137 
  Running scriptlet: tpm2-tss-4.0.0-0.1.rc2.fc38.i686                   119/137 
useradd: Warning: missing or non-executable shell '/usr/sbin/nologin'

  Installing       : tpm2-tss-4.0.0-0.1.rc2.fc38.i686                   119/137 
  Installing       : ima-evm-utils-1.4-6.fc38.i686                      120/137 
  Installing       : libyaml-0.2.5-8.fc38.i686                          121/137 
  Installing       : libmodulemd-2.14.0-4.fc38.i686                     122/137 
  Installing       : npth-1.6-10.fc38.i686                              123/137 
  Installing       : gnupg2-2.3.8-1.fc38.i686                           124/137 
  Installing       : gpgme-1.17.1-3.fc38.i686                           125/137 
  Installing       : librepo-1.15.1-1.fc38.i686                         126/137 
  Installing       : libdnf-0.68.0-1.fc38.i686                          127/137 
  Installing       : python3-libdnf-0.68.0-1.fc38.i686                  128/137 
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  Installing       : python3-gpg-1.17.1-3.fc38.i686                     130/137 
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  Installing       : python3-dnf-plugins-core-4.3.1-1.fc38.noarch       134/137 
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  Installing       : dnf-4.14.0-1.fc38.noarch                           136/137 
  Running scriptlet: dnf-4.14.0-1.fc38.noarch                           136/137 
  Running scriptlet: rpm-4.18.0-8.fc38.i686                             137/137 
  Installing       : rpm-4.18.0-8.fc38.i686                             137/137 
  Running scriptlet: filesystem-3.18-2.fc37.i686                        137/137 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch            137/137 
  Running scriptlet: rpm-4.18.0-8.fc38.i686                             137/137 
  Verifying        : alternatives-1.21-1.fc38.i686                        1/137 
  Verifying        : bash-5.2.9-3.fc38.i686                               2/137 
  Verifying        : bzip2-libs-1.0.8-12.fc38.i686                        3/137 
  Verifying        : coreutils-9.1-8.fc38.i686                            4/137 
  Verifying        : coreutils-common-9.1-8.fc38.i686                     5/137 
  Verifying        : curl-7.87.0-1.fc38.i686                              6/137 
  Verifying        : cyrus-sasl-lib-2.1.28-8.fc38.i686                    7/137 
  Verifying        : dbus-libs-1:1.14.4-1.fc38.i686                       8/137 
  Verifying        : elfutils-default-yama-scope-0.188-3.fc38.noarch      9/137 
  Verifying        : elfutils-libelf-0.188-3.fc38.i686                   10/137 
  Verifying        : elfutils-libs-0.188-3.fc38.i686                     11/137 
  Verifying        : expat-2.5.0-1.fc38.i686                             12/137 
  Verifying        : file-libs-5.42-4.fc38.i686                          13/137 
  Verifying        : findutils-1:4.9.0-2.fc38.i686                       14/137 
  Verifying        : gawk-5.1.1-4.fc38.i686                              15/137 
  Verifying        : gdbm-libs-1:1.23-2.fc38.i686                        16/137 
  Verifying        : glib2-2.74.1-2.fc38.i686                            17/137 
  Verifying        : gmp-1:6.2.1-3.fc38.i686                             18/137 
  Verifying        : gnupg2-2.3.8-1.fc38.i686                            19/137 
  Verifying        : gnutls-3.7.8-9.fc38.i686                            20/137 
  Verifying        : gpgme-1.17.1-3.fc38.i686                            21/137 
  Verifying        : grep-3.8-1.fc38.i686                                22/137 
  Verifying        : ima-evm-utils-1.4-6.fc38.i686                       23/137 
  Verifying        : json-c-0.16-3.fc38.i686                             24/137 
  Verifying        : keyutils-libs-1.6.1-5.fc38.i686                     25/137 
  Verifying        : krb5-libs-1.20.1-3.fc38.i686                        26/137 
  Verifying        : libacl-2.3.1-4.fc38.i686                            27/137 
  Verifying        : libarchive-3.6.1-3.fc38.i686                        28/137 
  Verifying        : libassuan-2.5.5-5.fc38.i686                         29/137 
  Verifying        : libattr-2.5.1-5.fc38.i686                           30/137 
  Verifying        : libb2-0.98.1-7.fc38.i686                            31/137 
  Verifying        : libbrotli-1.0.9-9.fc38.i686                         32/137 
  Verifying        : libcap-2.48-5.fc38.i686                             33/137 
  Verifying        : libcap-ng-0.8.3-4.fc38.i686                         34/137 
  Verifying        : libcomps-0.1.18-4.fc38.i686                         35/137 
  Verifying        : libcurl-7.87.0-1.fc38.i686                          36/137 
  Verifying        : libdnf-0.68.0-1.fc38.i686                           37/137 
  Verifying        : libevent-2.1.12-7.fc38.i686                         38/137 
  Verifying        : libffi-3.4.4-1.fc38.i686                            39/137 
  Verifying        : libfsverity-1.4-8.fc38.i686                         40/137 
  Verifying        : libgcrypt-1.10.1-6.fc38.i686                        41/137 
  Verifying        : libgpg-error-1.46-1.fc38.i686                       42/137 
  Verifying        : libidn2-2.3.4-1.fc38.i686                           43/137 
  Verifying        : libksba-1.6.3-1.fc38.i686                           44/137 
  Verifying        : libmodulemd-2.14.0-4.fc38.i686                      45/137 
  Verifying        : libnghttp2-1.51.0-1.fc38.i686                       46/137 
  Verifying        : libnsl2-2.0.0-4.fc38.i686                           47/137 
  Verifying        : librepo-1.15.1-1.fc38.i686                          48/137 
  Verifying        : libreport-filesystem-2.17.6-1.fc38.noarch           49/137 
  Verifying        : libsigsegv-2.14-3.fc38.i686                         50/137 
  Verifying        : libsolv-0.7.22-3.fc38.i686                          51/137 
  Verifying        : libssh-0.10.4-2.fc38.i686                           52/137 
  Verifying        : libssh-config-0.10.4-2.fc38.noarch                  53/137 
  Verifying        : libtasn1-4.19.0-1.fc38.i686                         54/137 
  Verifying        : libtirpc-1.3.3-0.fc38.i686                          55/137 
  Verifying        : libunistring-1.0-2.fc38.i686                        56/137 
  Verifying        : libverto-0.3.2-4.fc38.i686                          57/137 
  Verifying        : libxcrypt-4.4.33-5.fc38.i686                        58/137 
  Verifying        : libxml2-2.10.3-2.fc38.i686                          59/137 
  Verifying        : libyaml-0.2.5-8.fc38.i686                           60/137 
  Verifying        : lua-libs-5.4.4-6.fc38.i686                          61/137 
  Verifying        : lz4-libs-1.9.3-5.fc38.i686                          62/137 
  Verifying        : mpdecimal-2.5.1-4.fc38.i686                         63/137 
  Verifying        : mpfr-4.1.1-2.fc38.i686                              64/137 
  Verifying        : ncurses-base-6.3-5.20221126.fc38.noarch             65/137 
  Verifying        : ncurses-libs-6.3-5.20221126.fc38.i686               66/137 
  Verifying        : nettle-3.8-2.fc38.i686                              67/137 
  Verifying        : npth-1.6-10.fc38.i686                               68/137 
  Verifying        : openldap-2.6.3-1.fc38.i686                          69/137 
  Verifying        : openssl-libs-1:3.0.5-6.fc38.i686                    70/137 
  Verifying        : p11-kit-0.24.1-5.fc38.i686                          71/137 
  Verifying        : p11-kit-trust-0.24.1-5.fc38.i686                    72/137 
  Verifying        : pcre2-10.40-1.fc38.1.i686                           73/137 
  Verifying        : pcre2-syntax-10.40-1.fc38.1.noarch                  74/137 
  Verifying        : popt-1.19-1.fc38.i686                               75/137 
  Verifying        : python3-3.11.1-1.fc38.i686                          76/137 
  Verifying        : python3-dbus-1.3.2-1.fc38.i686                      77/137 
  Verifying        : python3-gpg-1.17.1-3.fc38.i686                      78/137 
  Verifying        : python3-hawkey-0.68.0-1.fc38.i686                   79/137 
  Verifying        : python3-libcomps-0.1.18-4.fc38.i686                 80/137 
  Verifying        : python3-libdnf-0.68.0-1.fc38.i686                   81/137 
  Verifying        : python3-libs-3.11.1-1.fc38.i686                     82/137 
  Verifying        : python3-rpm-4.18.0-8.fc38.i686                      83/137 
  Verifying        : readline-8.2-2.fc38.i686                            84/137 
  Verifying        : rpm-4.18.0-8.fc38.i686                              85/137 
  Verifying        : rpm-build-libs-4.18.0-8.fc38.i686                   86/137 
  Verifying        : rpm-libs-4.18.0-8.fc38.i686                         87/137 
  Verifying        : rpm-sequoia-1.2.0-1.fc38.i686                       88/137 
  Verifying        : rpm-sign-libs-4.18.0-8.fc38.i686                    89/137 
  Verifying        : libgcc-13.0.0-0.4.fc38.i686                         90/137 
  Verifying        : libgomp-13.0.0-0.4.fc38.i686                        91/137 
  Verifying        : libstdc++-13.0.0-0.4.fc38.i686                      92/137 
  Verifying        : audit-libs-3.0.9-2.fc38.i686                        93/137 
  Verifying        : basesystem-11-14.fc37.noarch                        94/137 
  Verifying        : ca-certificates-2022.2.54-5.fc37.noarch             95/137 
  Verifying        : crypto-policies-20221215-1.gita4c31a3.fc38.noarc    96/137 
  Verifying        : dnf-4.14.0-1.fc38.noarch                            97/137 
  Verifying        : dnf-data-4.14.0-1.fc38.noarch                       98/137 
  Verifying        : dnf-plugins-core-4.3.1-1.fc38.noarch                99/137 
  Verifying        : fedora-gpg-keys-38-0.3.noarch                      100/137 
  Verifying        : fedora-release-38-0.6.noarch                       101/137 
  Verifying        : fedora-release-common-38-0.6.noarch                102/137 
  Verifying        : fedora-release-identity-basic-38-0.6.noarch        103/137 
  Verifying        : fedora-repos-38-0.3.noarch                         104/137 
  Verifying        : fedora-repos-rawhide-38-0.3.noarch                 105/137 
  Verifying        : filesystem-3.18-2.fc37.i686                        106/137 
  Verifying        : glibc-2.36.9000-19.fc38.i686                       107/137 
  Verifying        : glibc-common-2.36.9000-19.fc38.i686                108/137 
  Verifying        : glibc-minimal-langpack-2.36.9000-19.fc38.i686      109/137 
  Verifying        : libblkid-2.38.1-3.fc38.i686                        110/137 
  Verifying        : libcom_err-1.46.5-3.fc37.i686                      111/137 
  Verifying        : libmount-2.38.1-3.fc38.i686                        112/137 
  Verifying        : libpsl-0.21.2-1.fc38.i686                          113/137 
  Verifying        : libselinux-3.5-0.rc1.1.fc38.i686                   114/137 
  Verifying        : libsemanage-3.5-0.rc1.1.fc38.i686                  115/137 
  Verifying        : libsepol-3.5-0.rc1.1.fc38.i686                     116/137 
  Verifying        : libsmartcols-2.38.1-3.fc38.i686                    117/137 
  Verifying        : libuuid-2.38.1-3.fc38.i686                         118/137 
  Verifying        : libzstd-1.5.2-3.fc37.i686                          119/137 
  Verifying        : publicsuffix-list-dafsa-20221208-1.fc38.noarch     120/137 
  Verifying        : python-pip-wheel-22.3.1-1.fc38.noarch              121/137 
  Verifying        : python-setuptools-wheel-65.5.1-1.fc38.noarch       122/137 
  Verifying        : python3-dateutil-1:2.8.2-4.fc37.noarch             123/137 
  Verifying        : python3-distro-1.8.0-1.fc38.noarch                 124/137 
  Verifying        : python3-dnf-4.14.0-1.fc38.noarch                   125/137 
  Verifying        : python3-dnf-plugins-core-4.3.1-1.fc38.noarch       126/137 
  Verifying        : python3-six-1.16.0-8.fc37.noarch                   127/137 
  Verifying        : sed-4.8-11.fc37.i686                               128/137 
  Verifying        : setup-2.14.3-1.fc38.noarch                         129/137 
  Verifying        : shadow-utils-2:4.13-3.fc38.i686                    130/137 
  Verifying        : sqlite-libs-3.40.0-1.fc38.i686                     131/137 
  Verifying        : systemd-libs-252.4-598.fc38.i686                   132/137 
  Verifying        : tpm2-tss-4.0.0-0.1.rc2.fc38.i686                   133/137 
  Verifying        : tzdata-2022g-1.fc38.noarch                         134/137 
  Verifying        : xz-libs-5.2.9-1.fc38.i686                          135/137 
  Verifying        : zchunk-libs-1.2.3-1.fc38.i686                      136/137 
  Verifying        : zlib-1.2.13-1.fc38.i686                            137/137 
Installed products updated.

Installed:
  alternatives-1.21-1.fc38.i686                                                 
  audit-libs-3.0.9-2.fc38.i686                                                  
  basesystem-11-14.fc37.noarch                                                  
  bash-5.2.9-3.fc38.i686                                                        
  bzip2-libs-1.0.8-12.fc38.i686                                                 
  ca-certificates-2022.2.54-5.fc37.noarch                                       
  coreutils-9.1-8.fc38.i686                                                     
  coreutils-common-9.1-8.fc38.i686                                              
  crypto-policies-20221215-1.gita4c31a3.fc38.noarch                             
  curl-7.87.0-1.fc38.i686                                                       
  cyrus-sasl-lib-2.1.28-8.fc38.i686                                             
  dbus-libs-1:1.14.4-1.fc38.i686                                                
  dnf-4.14.0-1.fc38.noarch                                                      
  dnf-data-4.14.0-1.fc38.noarch                                                 
  dnf-plugins-core-4.3.1-1.fc38.noarch                                          
  elfutils-default-yama-scope-0.188-3.fc38.noarch                               
  elfutils-libelf-0.188-3.fc38.i686                                             
  elfutils-libs-0.188-3.fc38.i686                                               
  expat-2.5.0-1.fc38.i686                                                       
  fedora-gpg-keys-38-0.3.noarch                                                 
  fedora-release-38-0.6.noarch                                                  
  fedora-release-common-38-0.6.noarch                                           
  fedora-release-identity-basic-38-0.6.noarch                                   
  fedora-repos-38-0.3.noarch                                                    
  fedora-repos-rawhide-38-0.3.noarch                                            
  file-libs-5.42-4.fc38.i686                                                    
  filesystem-3.18-2.fc37.i686                                                   
  findutils-1:4.9.0-2.fc38.i686                                                 
  gawk-5.1.1-4.fc38.i686                                                        
  gdbm-libs-1:1.23-2.fc38.i686                                                  
  glib2-2.74.1-2.fc38.i686                                                      
  glibc-2.36.9000-19.fc38.i686                                                  
  glibc-common-2.36.9000-19.fc38.i686                                           
  glibc-minimal-langpack-2.36.9000-19.fc38.i686                                 
  gmp-1:6.2.1-3.fc38.i686                                                       
  gnupg2-2.3.8-1.fc38.i686                                                      
  gnutls-3.7.8-9.fc38.i686                                                      
  gpgme-1.17.1-3.fc38.i686                                                      
  grep-3.8-1.fc38.i686                                                          
  ima-evm-utils-1.4-6.fc38.i686                                                 
  json-c-0.16-3.fc38.i686                                                       
  keyutils-libs-1.6.1-5.fc38.i686                                               
  krb5-libs-1.20.1-3.fc38.i686                                                  
  libacl-2.3.1-4.fc38.i686                                                      
  libarchive-3.6.1-3.fc38.i686                                                  
  libassuan-2.5.5-5.fc38.i686                                                   
  libattr-2.5.1-5.fc38.i686                                                     
  libb2-0.98.1-7.fc38.i686                                                      
  libblkid-2.38.1-3.fc38.i686                                                   
  libbrotli-1.0.9-9.fc38.i686                                                   
  libcap-2.48-5.fc38.i686                                                       
  libcap-ng-0.8.3-4.fc38.i686                                                   
  libcom_err-1.46.5-3.fc37.i686                                                 
  libcomps-0.1.18-4.fc38.i686                                                   
  libcurl-7.87.0-1.fc38.i686                                                    
  libdnf-0.68.0-1.fc38.i686                                                     
  libevent-2.1.12-7.fc38.i686                                                   
  libffi-3.4.4-1.fc38.i686                                                      
  libfsverity-1.4-8.fc38.i686                                                   
  libgcc-13.0.0-0.4.fc38.i686                                                   
  libgcrypt-1.10.1-6.fc38.i686                                                  
  libgomp-13.0.0-0.4.fc38.i686                                                  
  libgpg-error-1.46-1.fc38.i686                                                 
  libidn2-2.3.4-1.fc38.i686                                                     
  libksba-1.6.3-1.fc38.i686                                                     
  libmodulemd-2.14.0-4.fc38.i686                                                
  libmount-2.38.1-3.fc38.i686                                                   
  libnghttp2-1.51.0-1.fc38.i686                                                 
  libnsl2-2.0.0-4.fc38.i686                                                     
  libpsl-0.21.2-1.fc38.i686                                                     
  librepo-1.15.1-1.fc38.i686                                                    
  libreport-filesystem-2.17.6-1.fc38.noarch                                     
  libselinux-3.5-0.rc1.1.fc38.i686                                              
  libsemanage-3.5-0.rc1.1.fc38.i686                                             
  libsepol-3.5-0.rc1.1.fc38.i686                                                
  libsigsegv-2.14-3.fc38.i686                                                   
  libsmartcols-2.38.1-3.fc38.i686                                               
  libsolv-0.7.22-3.fc38.i686                                                    
  libssh-0.10.4-2.fc38.i686                                                     
  libssh-config-0.10.4-2.fc38.noarch                                            
  libstdc++-13.0.0-0.4.fc38.i686                                                
  libtasn1-4.19.0-1.fc38.i686                                                   
  libtirpc-1.3.3-0.fc38.i686                                                    
  libunistring-1.0-2.fc38.i686                                                  
  libuuid-2.38.1-3.fc38.i686                                                    
  libverto-0.3.2-4.fc38.i686                                                    
  libxcrypt-4.4.33-5.fc38.i686                                                  
  libxml2-2.10.3-2.fc38.i686                                                    
  libyaml-0.2.5-8.fc38.i686                                                     
  libzstd-1.5.2-3.fc37.i686                                                     
  lua-libs-5.4.4-6.fc38.i686                                                    
  lz4-libs-1.9.3-5.fc38.i686                                                    
  mpdecimal-2.5.1-4.fc38.i686                                                   
  mpfr-4.1.1-2.fc38.i686                                                        
  ncurses-base-6.3-5.20221126.fc38.noarch                                       
  ncurses-libs-6.3-5.20221126.fc38.i686                                         
  nettle-3.8-2.fc38.i686                                                        
  npth-1.6-10.fc38.i686                                                         
  openldap-2.6.3-1.fc38.i686                                                    
  openssl-libs-1:3.0.5-6.fc38.i686                                              
  p11-kit-0.24.1-5.fc38.i686                                                    
  p11-kit-trust-0.24.1-5.fc38.i686                                              
  pcre2-10.40-1.fc38.1.i686                                                     
  pcre2-syntax-10.40-1.fc38.1.noarch                                            
  popt-1.19-1.fc38.i686                                                         
  publicsuffix-list-dafsa-20221208-1.fc38.noarch                                
  python-pip-wheel-22.3.1-1.fc38.noarch                                         
  python-setuptools-wheel-65.5.1-1.fc38.noarch                                  
  python3-3.11.1-1.fc38.i686                                                    
  python3-dateutil-1:2.8.2-4.fc37.noarch                                        
  python3-dbus-1.3.2-1.fc38.i686                                                
  python3-distro-1.8.0-1.fc38.noarch                                            
  python3-dnf-4.14.0-1.fc38.noarch                                              
  python3-dnf-plugins-core-4.3.1-1.fc38.noarch                                  
  python3-gpg-1.17.1-3.fc38.i686                                                
  python3-hawkey-0.68.0-1.fc38.i686                                             
  python3-libcomps-0.1.18-4.fc38.i686                                           
  python3-libdnf-0.68.0-1.fc38.i686                                             
  python3-libs-3.11.1-1.fc38.i686                                               
  python3-rpm-4.18.0-8.fc38.i686                                                
  python3-six-1.16.0-8.fc37.noarch                                              
  readline-8.2-2.fc38.i686                                                      
  rpm-4.18.0-8.fc38.i686                                                        
  rpm-build-libs-4.18.0-8.fc38.i686                                             
  rpm-libs-4.18.0-8.fc38.i686                                                   
  rpm-sequoia-1.2.0-1.fc38.i686                                                 
  rpm-sign-libs-4.18.0-8.fc38.i686                                              
  sed-4.8-11.fc37.i686                                                          
  setup-2.14.3-1.fc38.noarch                                                    
  shadow-utils-2:4.13-3.fc38.i686                                               
  sqlite-libs-3.40.0-1.fc38.i686                                                
  systemd-libs-252.4-598.fc38.i686                                              
  tpm2-tss-4.0.0-0.1.rc2.fc38.i686                                              
  tzdata-2022g-1.fc38.noarch                                                    
  xz-libs-5.2.9-1.fc38.i686                                                     
  zchunk-libs-1.2.3-1.fc38.i686                                                 
  zlib-1.2.13-1.fc38.i686                                                       

Complete!
Finish(bootstrap): dnf install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1672304886.477783/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  12 kB/s | 3.0 kB     00:00    
Copr repository                                  39 MB/s |  36 MB     00:00    
Additional repo https_jakub_fedorapeople_org_fe 9.0 kB/s | 3.0 kB     00:00    
local                                            14 kB/s | 3.8 kB     00:00    
Dependencies resolved.
=========================================================================================================================
 Package                         Arch    Version                    Repository                                       Size
=========================================================================================================================
Installing group/module packages:
 bash                            i686    5.2.9-3.fc38               copr_base                                       1.8 M
 bzip2                           i686    1.0.8-12.fc38              copr_base                                        53 k
 coreutils                       i686    9.1-8.fc38                 copr_base                                       1.1 M
 cpio                            i686    2.13-13.fc38               copr_base                                       274 k
 diffutils                       i686    3.8-3.fc38                 copr_base                                       375 k
 fedora-release                  noarch  38-0.6                     local                                            11 k
 findutils                       i686    1:4.9.0-2.fc38             copr_base                                       494 k
 gawk                            i686    5.1.1-4.fc38               copr_base                                       1.0 M
 glibc-minimal-langpack          i686    2.36.9000-19.fc38          local                                            30 k
 grep                            i686    3.8-1.fc38                 copr_base                                       289 k
 gzip                            i686    1.12-2.fc38                copr_base                                       158 k
 info                            i686    7.0.1-1.fc38               local                                           183 k
 patch                           i686    2.7.6-17.fc38              copr_base                                       138 k
 redhat-rpm-config               noarch  236-1.fc38                 local                                            74 k
 rpm-build                       i686    4.18.0-8.fc38              copr_base                                        70 k
 sed                             i686    4.8-11.fc37                local                                           300 k
 shadow-utils                    i686    2:4.13-3.fc38              local                                           1.2 M
 tar                             i686    2:1.34-5.fc38              local                                           892 k
 unzip                           i686    6.0-58.fc38                local                                           177 k
 util-linux                      i686    2.38.1-3.fc38              local                                           2.3 M
 which                           i686    2.21-36.fc38               local                                            42 k
 xz                              i686    5.2.9-1.fc38               local                                           300 k
Installing dependencies:
 alternatives                    i686    1.21-1.fc38                copr_base                                        39 k
 ansible-srpm-macros             noarch  1-8.1.fc38                 local                                           8.6 k
 audit-libs                      i686    3.0.9-2.fc38               local                                           122 k
 authselect                      i686    1.4.2-1.fc38               copr_base                                       141 k
 authselect-libs                 i686    1.4.2-1.fc38               copr_base                                       239 k
 basesystem                      noarch  11-14.fc37                 local                                           7.0 k
 binutils                        i686    2.39-6.fc38                copr_base                                       5.6 M
 binutils-gold                   i686    2.39-6.fc38                copr_base                                       853 k
 bzip2-libs                      i686    1.0.8-12.fc38              copr_base                                        42 k
 ca-certificates                 noarch  2022.2.54-5.fc37           local                                           829 k
 coreutils-common                i686    9.1-8.fc38                 copr_base                                       2.0 M
 cracklib                        i686    2.9.7-30.fc38              copr_base                                        82 k
 crypto-policies                 noarch  20221215-1.gita4c31a3.fc38 local                                            63 k
 curl                            i686    7.87.0-1.fc38              copr_base                                       347 k
 cyrus-sasl-lib                  i686    2.1.28-8.fc38              copr_base                                       858 k
 debugedit                       i686    5.0-5.fc37                 local                                            78 k
 dwz                             i686    0.15-1.fc38                copr_base                                       144 k
 ed                              i686    1.18-2.fc38                copr_base                                        78 k
 efi-srpm-macros                 noarch  5-6.fc37                   local                                            22 k
 elfutils                        i686    0.188-3.fc38               copr_base                                       543 k
 elfutils-debuginfod-client      i686    0.188-3.fc38               copr_base                                        41 k
 elfutils-default-yama-scope     noarch  0.188-3.fc38               copr_base                                        16 k
 elfutils-libelf                 i686    0.188-3.fc38               copr_base                                       204 k
 elfutils-libs                   i686    0.188-3.fc38               copr_base                                       287 k
 fedora-gpg-keys                 noarch  38-0.3                     local                                           115 k
 fedora-release-common           noarch  38-0.6                     local                                            21 k
 fedora-release-identity-basic   noarch  38-0.6                     local                                            11 k
 fedora-repos                    noarch  38-0.3                     local                                            10 k
 fedora-repos-rawhide            noarch  38-0.3                     local                                           9.7 k
 file                            i686    5.42-4.fc38                copr_base                                        49 k
 file-libs                       i686    5.42-4.fc38                copr_base                                       684 k
 filesystem                      i686    3.18-2.fc37                local                                           1.1 M
 fonts-srpm-macros               noarch  1:2.0.5-10.fc38            local                                            26 k
 fpc-srpm-macros                 noarch  1.3-6.fc37                 local                                           7.7 k
 gdb-minimal                     i686    12.1-10.fc38               local                                           3.9 M
 gdbm-libs                       i686    1:1.23-2.fc38              copr_base                                        60 k
 ghc-srpm-macros                 noarch  1.5.0-7.fc37               local                                           7.8 k
 glibc                           i686    2.36.9000-19.fc38          local                                           1.9 M
 glibc-common                    i686    2.36.9000-19.fc38          local                                           315 k
 glibc-gconv-extra               i686    2.36.9000-19.fc38          local                                           1.6 M
 gmp                             i686    1:6.2.1-3.fc38             copr_base                                       306 k
 gnat-srpm-macros                noarch  4-16.fc37                  local                                           8.3 k
 go-srpm-macros                  noarch  3.2.0-1.fc38               local                                            27 k
 jansson                         i686    2.13.1-5.fc38              copr_base                                        47 k
 kernel-srpm-macros              noarch  1.0-15.fc37                local                                           9.4 k
 keyutils-libs                   i686    1.6.1-5.fc38               copr_base                                        32 k
 krb5-libs                       i686    1.20.1-3.fc38              copr_base                                       764 k
 libacl                          i686    2.3.1-4.fc38               copr_base                                        25 k
 libarchive                      i686    3.6.1-3.fc38               copr_base                                       442 k
 libattr                         i686    2.5.1-5.fc38               copr_base                                        19 k
 libblkid                        i686    2.38.1-3.fc38              local                                           116 k
 libbrotli                       i686    1.0.9-9.fc38               copr_base                                       318 k
 libcap                          i686    2.48-5.fc38                copr_base                                        69 k
 libcap-ng                       i686    0.8.3-4.fc38               copr_base                                        33 k
 libcom_err                      i686    1.46.5-3.fc37              local                                            26 k
 libcurl                         i686    7.87.0-1.fc38              copr_base                                       327 k
 libdb                           i686    5.3.28-54.fc38             copr_base                                       823 k
 libeconf                        i686    0.4.0-4.fc38               copr_base                                        29 k
 libevent                        i686    2.1.12-7.fc38              copr_base                                       277 k
 libfdisk                        i686    2.38.1-3.fc38              local                                           173 k
 libffi                          i686    3.4.4-1.fc38               copr_base                                        36 k
 libgcc                          i686    13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  101 k
 libgomp                         i686    13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  304 k
 libidn2                         i686    2.3.4-1.fc38               copr_base                                       155 k
 libmount                        i686    2.38.1-3.fc38              local                                           141 k
 libnghttp2                      i686    1.51.0-1.fc38              copr_base                                        81 k
 libnsl2                         i686    2.0.0-4.fc38               copr_base                                        32 k
 libpkgconf                      i686    1.8.0-3.fc38               copr_base                                        39 k
 libpsl                          i686    0.21.2-1.fc38              local                                            66 k
 libpwquality                    i686    1.4.5-1.fc38               local                                           108 k
 libselinux                      i686    3.5-0.rc1.1.fc38           local                                            91 k
 libsemanage                     i686    3.5-0.rc1.1.fc38           local                                           128 k
 libsepol                        i686    3.5-0.rc1.1.fc38           local                                           336 k
 libsigsegv                      i686    2.14-3.fc38                copr_base                                        28 k
 libsmartcols                    i686    2.38.1-3.fc38              local                                            65 k
 libssh                          i686    0.10.4-2.fc38              copr_base                                       223 k
 libssh-config                   noarch  0.10.4-2.fc38              copr_base                                       9.3 k
 libstdc++                       i686    13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  857 k
 libtasn1                        i686    4.19.0-1.fc38              copr_base                                        77 k
 libtirpc                        i686    1.3.3-0.fc38               copr_base                                       101 k
 libunistring                    i686    1.0-2.fc38                 copr_base                                       549 k
 libutempter                     i686    1.2.1-7.fc38               copr_base                                        27 k
 libuuid                         i686    2.38.1-3.fc38              local                                            28 k
 libverto                        i686    0.3.2-4.fc38               copr_base                                        22 k
 libxcrypt                       i686    4.4.33-5.fc38              copr_base                                       124 k
 libxml2                         i686    2.10.3-2.fc38              copr_base                                       744 k
 libzstd                         i686    1.5.2-3.fc37               local                                           274 k
 lua-libs                        i686    5.4.4-6.fc38               copr_base                                       149 k
 lua-srpm-macros                 noarch  1-7.fc37                   local                                           8.8 k
 lz4-libs                        i686    1.9.3-5.fc38               copr_base                                        72 k
 mpfr                            i686    4.1.1-2.fc38               copr_base                                       637 k
 ncurses-base                    noarch  6.3-5.20221126.fc38        copr_base                                        62 k
 ncurses-libs                    i686    6.3-5.20221126.fc38        copr_base                                       351 k
 nettle                          i686    3.8-2.fc38                 copr_base                                       426 k
 nim-srpm-macros                 noarch  3-7.fc37                   local                                           8.4 k
 ocaml-srpm-macros               noarch  7-2.fc37                   local                                            13 k
 openblas-srpm-macros            noarch  2-12.fc37                  local                                           7.5 k
 openldap                        i686    2.6.3-1.fc38               copr_base                                       274 k
 openssl-libs                    i686    1:3.0.5-6.fc38             copr_base                                       2.1 M
 p11-kit                         i686    0.24.1-5.fc38              copr_base                                       335 k
 p11-kit-trust                   i686    0.24.1-5.fc38              copr_base                                       136 k
 package-notes-srpm-macros       noarch  0.5-6.fc38                 local                                            11 k
 pam                             i686    1.5.2-15.fc38              copr_base                                       536 k
 pam-libs                        i686    1.5.2-15.fc38              copr_base                                        60 k
 pcre2                           i686    10.40-1.fc38.1             copr_base                                       235 k
 pcre2-syntax                    noarch  10.40-1.fc38.1             copr_base                                       143 k
 perl-srpm-macros                noarch  1-47.fc38                  local                                           8.2 k
 pkgconf                         i686    1.8.0-3.fc38               copr_base                                        42 k
 pkgconf-m4                      noarch  1.8.0-3.fc38               copr_base                                        15 k
 pkgconf-pkg-config              i686    1.8.0-3.fc38               copr_base                                        11 k
 popt                            i686    1.19-1.fc38                copr_base                                        62 k
 publicsuffix-list-dafsa         noarch  20221208-1.fc38            local                                            59 k
 python-srpm-macros              noarch  3.11-6.fc38                local                                            25 k
 qt5-srpm-macros                 noarch  5.15.7-1.fc38              copr_base                                       8.5 k
 readline                        i686    8.2-2.fc38                 copr_base                                       219 k
 rpm                             i686    4.18.0-8.fc38              copr_base                                       541 k
 rpm-build-libs                  i686    4.18.0-8.fc38              copr_base                                       102 k
 rpm-libs                        i686    4.18.0-8.fc38              copr_base                                       342 k
 rpm-sequoia                     i686    1.2.0-1.fc38               copr_base                                       914 k
 rpmautospec-rpm-macros          noarch  0.3.1-1.fc38               copr_base                                       9.4 k
 rust-srpm-macros                noarch  23-1.fc38                  local                                           9.4 k
 setup                           noarch  2.14.3-1.fc38              local                                           146 k
 sqlite-libs                     i686    3.40.0-1.fc38              local                                           705 k
 systemd-libs                    i686    252.4-598.fc38             local                                           662 k
 tzdata                          noarch  2022g-1.fc38               local                                           432 k
 util-linux-core                 i686    2.38.1-3.fc38              local                                           467 k
 xxhash-libs                     i686    0.8.1-3.fc37               local                                            59 k
 xz-libs                         i686    5.2.9-1.fc38               local                                           101 k
 zip                             i686    3.0-35.fc38                local                                           263 k
 zlib                            i686    1.2.13-1.fc38              local                                            92 k
 zstd                            i686    1.5.2-3.fc37               local                                           418 k
Installing Groups:
 build                                                                                                                   

Transaction Summary
=========================================================================================================================
Install  153 Packages

Total size: 53 M
Installed size: 178 M
Downloading Packages:
[SKIPPED] alternatives-1.21-1.fc38.i686.rpm: Already downloaded                
[SKIPPED] authselect-1.4.2-1.fc38.i686.rpm: Already downloaded                 
[SKIPPED] authselect-libs-1.4.2-1.fc38.i686.rpm: Already downloaded            
[SKIPPED] bash-5.2.9-3.fc38.i686.rpm: Already downloaded                       
[SKIPPED] binutils-2.39-6.fc38.i686.rpm: Already downloaded                    
[SKIPPED] binutils-gold-2.39-6.fc38.i686.rpm: Already downloaded               
[SKIPPED] bzip2-1.0.8-12.fc38.i686.rpm: Already downloaded                     
[SKIPPED] bzip2-libs-1.0.8-12.fc38.i686.rpm: Already downloaded                
[SKIPPED] coreutils-9.1-8.fc38.i686.rpm: Already downloaded                    
[SKIPPED] coreutils-common-9.1-8.fc38.i686.rpm: Already downloaded             
[SKIPPED] cpio-2.13-13.fc38.i686.rpm: Already downloaded                       
[SKIPPED] cracklib-2.9.7-30.fc38.i686.rpm: Already downloaded                  
[SKIPPED] curl-7.87.0-1.fc38.i686.rpm: Already downloaded                      
[SKIPPED] cyrus-sasl-lib-2.1.28-8.fc38.i686.rpm: Already downloaded            
[SKIPPED] diffutils-3.8-3.fc38.i686.rpm: Already downloaded                    
[SKIPPED] dwz-0.15-1.fc38.i686.rpm: Already downloaded                         
[SKIPPED] ed-1.18-2.fc38.i686.rpm: Already downloaded                          
[SKIPPED] elfutils-0.188-3.fc38.i686.rpm: Already downloaded                   
[SKIPPED] elfutils-debuginfod-client-0.188-3.fc38.i686.rpm: Already downloaded 
[SKIPPED] elfutils-default-yama-scope-0.188-3.fc38.noarch.rpm: Already downloaded
[SKIPPED] elfutils-libelf-0.188-3.fc38.i686.rpm: Already downloaded            
[SKIPPED] elfutils-libs-0.188-3.fc38.i686.rpm: Already downloaded              
[SKIPPED] file-5.42-4.fc38.i686.rpm: Already downloaded                        
[SKIPPED] file-libs-5.42-4.fc38.i686.rpm: Already downloaded                   
[SKIPPED] findutils-4.9.0-2.fc38.i686.rpm: Already downloaded                  
[SKIPPED] gawk-5.1.1-4.fc38.i686.rpm: Already downloaded                       
[SKIPPED] gdbm-libs-1.23-2.fc38.i686.rpm: Already downloaded                   
[SKIPPED] gmp-6.2.1-3.fc38.i686.rpm: Already downloaded                        
[SKIPPED] grep-3.8-1.fc38.i686.rpm: Already downloaded                         
[SKIPPED] gzip-1.12-2.fc38.i686.rpm: Already downloaded                        
[SKIPPED] jansson-2.13.1-5.fc38.i686.rpm: Already downloaded                   
[SKIPPED] keyutils-libs-1.6.1-5.fc38.i686.rpm: Already downloaded              
[SKIPPED] krb5-libs-1.20.1-3.fc38.i686.rpm: Already downloaded                 
[SKIPPED] libacl-2.3.1-4.fc38.i686.rpm: Already downloaded                     
[SKIPPED] libarchive-3.6.1-3.fc38.i686.rpm: Already downloaded                 
[SKIPPED] libattr-2.5.1-5.fc38.i686.rpm: Already downloaded                    
[SKIPPED] libbrotli-1.0.9-9.fc38.i686.rpm: Already downloaded                  
[SKIPPED] libcap-2.48-5.fc38.i686.rpm: Already downloaded                      
[SKIPPED] libcap-ng-0.8.3-4.fc38.i686.rpm: Already downloaded                  
[SKIPPED] libcurl-7.87.0-1.fc38.i686.rpm: Already downloaded                   
[SKIPPED] libdb-5.3.28-54.fc38.i686.rpm: Already downloaded                    
[SKIPPED] libeconf-0.4.0-4.fc38.i686.rpm: Already downloaded                   
[SKIPPED] libevent-2.1.12-7.fc38.i686.rpm: Already downloaded                  
[SKIPPED] libffi-3.4.4-1.fc38.i686.rpm: Already downloaded                     
[SKIPPED] libidn2-2.3.4-1.fc38.i686.rpm: Already downloaded                    
[SKIPPED] libnghttp2-1.51.0-1.fc38.i686.rpm: Already downloaded                
[SKIPPED] libnsl2-2.0.0-4.fc38.i686.rpm: Already downloaded                    
[SKIPPED] libpkgconf-1.8.0-3.fc38.i686.rpm: Already downloaded                 
[SKIPPED] libsigsegv-2.14-3.fc38.i686.rpm: Already downloaded                  
[SKIPPED] libssh-0.10.4-2.fc38.i686.rpm: Already downloaded                    
[SKIPPED] libssh-config-0.10.4-2.fc38.noarch.rpm: Already downloaded           
[SKIPPED] libtasn1-4.19.0-1.fc38.i686.rpm: Already downloaded                  
[SKIPPED] libtirpc-1.3.3-0.fc38.i686.rpm: Already downloaded                   
[SKIPPED] libunistring-1.0-2.fc38.i686.rpm: Already downloaded                 
[SKIPPED] libutempter-1.2.1-7.fc38.i686.rpm: Already downloaded                
[SKIPPED] libverto-0.3.2-4.fc38.i686.rpm: Already downloaded                   
[SKIPPED] libxcrypt-4.4.33-5.fc38.i686.rpm: Already downloaded                 
[SKIPPED] libxml2-2.10.3-2.fc38.i686.rpm: Already downloaded                   
[SKIPPED] lua-libs-5.4.4-6.fc38.i686.rpm: Already downloaded                   
[SKIPPED] lz4-libs-1.9.3-5.fc38.i686.rpm: Already downloaded                   
[SKIPPED] mpfr-4.1.1-2.fc38.i686.rpm: Already downloaded                       
[SKIPPED] ncurses-base-6.3-5.20221126.fc38.noarch.rpm: Already downloaded      
[SKIPPED] ncurses-libs-6.3-5.20221126.fc38.i686.rpm: Already downloaded        
[SKIPPED] nettle-3.8-2.fc38.i686.rpm: Already downloaded                       
[SKIPPED] openldap-2.6.3-1.fc38.i686.rpm: Already downloaded                   
[SKIPPED] openssl-libs-3.0.5-6.fc38.i686.rpm: Already downloaded               
[SKIPPED] p11-kit-0.24.1-5.fc38.i686.rpm: Already downloaded                   
[SKIPPED] p11-kit-trust-0.24.1-5.fc38.i686.rpm: Already downloaded             
[SKIPPED] pam-1.5.2-15.fc38.i686.rpm: Already downloaded                       
[SKIPPED] pam-libs-1.5.2-15.fc38.i686.rpm: Already downloaded                  
[SKIPPED] patch-2.7.6-17.fc38.i686.rpm: Already downloaded                     
[SKIPPED] pcre2-10.40-1.fc38.1.i686.rpm: Already downloaded                    
[SKIPPED] pcre2-syntax-10.40-1.fc38.1.noarch.rpm: Already downloaded           
[SKIPPED] pkgconf-1.8.0-3.fc38.i686.rpm: Already downloaded                    
[SKIPPED] pkgconf-m4-1.8.0-3.fc38.noarch.rpm: Already downloaded               
[SKIPPED] pkgconf-pkg-config-1.8.0-3.fc38.i686.rpm: Already downloaded         
[SKIPPED] popt-1.19-1.fc38.i686.rpm: Already downloaded                        
[SKIPPED] qt5-srpm-macros-5.15.7-1.fc38.noarch.rpm: Already downloaded         
[SKIPPED] readline-8.2-2.fc38.i686.rpm: Already downloaded                     
[SKIPPED] rpm-4.18.0-8.fc38.i686.rpm: Already downloaded                       
[SKIPPED] rpm-build-4.18.0-8.fc38.i686.rpm: Already downloaded                 
[SKIPPED] rpm-build-libs-4.18.0-8.fc38.i686.rpm: Already downloaded            
[SKIPPED] rpm-libs-4.18.0-8.fc38.i686.rpm: Already downloaded                  
[SKIPPED] rpm-sequoia-1.2.0-1.fc38.i686.rpm: Already downloaded                
[SKIPPED] rpmautospec-rpm-macros-0.3.1-1.fc38.noarch.rpm: Already downloaded   
[SKIPPED] libgcc-13.0.0-0.4.fc38.i686.rpm: Already downloaded                  
[SKIPPED] libgomp-13.0.0-0.4.fc38.i686.rpm: Already downloaded                 
[SKIPPED] libstdc++-13.0.0-0.4.fc38.i686.rpm: Already downloaded               
[SKIPPED] ansible-srpm-macros-1-8.1.fc38.noarch.rpm: Already downloaded        
[SKIPPED] audit-libs-3.0.9-2.fc38.i686.rpm: Already downloaded                 
[SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded                 
[SKIPPED] ca-certificates-2022.2.54-5.fc37.noarch.rpm: Already downloaded      
[SKIPPED] crypto-policies-20221215-1.gita4c31a3.fc38.noarch.rpm: Already downloaded
[SKIPPED] debugedit-5.0-5.fc37.i686.rpm: Already downloaded                    
[SKIPPED] efi-srpm-macros-5-6.fc37.noarch.rpm: Already downloaded              
[SKIPPED] fedora-gpg-keys-38-0.3.noarch.rpm: Already downloaded                
[SKIPPED] fedora-release-38-0.6.noarch.rpm: Already downloaded                 
[SKIPPED] fedora-release-common-38-0.6.noarch.rpm: Already downloaded          
[SKIPPED] fedora-release-identity-basic-38-0.6.noarch.rpm: Already downloaded  
[SKIPPED] fedora-repos-38-0.3.noarch.rpm: Already downloaded                   
[SKIPPED] fedora-repos-rawhide-38-0.3.noarch.rpm: Already downloaded           
[SKIPPED] filesystem-3.18-2.fc37.i686.rpm: Already downloaded                  
[SKIPPED] fonts-srpm-macros-2.0.5-10.fc38.noarch.rpm: Already downloaded       
[SKIPPED] fpc-srpm-macros-1.3-6.fc37.noarch.rpm: Already downloaded            
[SKIPPED] gdb-minimal-12.1-10.fc38.i686.rpm: Already downloaded                
[SKIPPED] ghc-srpm-macros-1.5.0-7.fc37.noarch.rpm: Already downloaded          
[SKIPPED] glibc-2.36.9000-19.fc38.i686.rpm: Already downloaded                 
[SKIPPED] glibc-common-2.36.9000-19.fc38.i686.rpm: Already downloaded          
[SKIPPED] glibc-gconv-extra-2.36.9000-19.fc38.i686.rpm: Already downloaded     
[SKIPPED] glibc-minimal-langpack-2.36.9000-19.fc38.i686.rpm: Already downloaded
[SKIPPED] gnat-srpm-macros-4-16.fc37.noarch.rpm: Already downloaded            
[SKIPPED] go-srpm-macros-3.2.0-1.fc38.noarch.rpm: Already downloaded           
[SKIPPED] info-7.0.1-1.fc38.i686.rpm: Already downloaded                       
[SKIPPED] kernel-srpm-macros-1.0-15.fc37.noarch.rpm: Already downloaded        
[SKIPPED] libblkid-2.38.1-3.fc38.i686.rpm: Already downloaded                  
[SKIPPED] libcom_err-1.46.5-3.fc37.i686.rpm: Already downloaded                
[SKIPPED] libfdisk-2.38.1-3.fc38.i686.rpm: Already downloaded                  
[SKIPPED] libmount-2.38.1-3.fc38.i686.rpm: Already downloaded                  
[SKIPPED] libpsl-0.21.2-1.fc38.i686.rpm: Already downloaded                    
[SKIPPED] libpwquality-1.4.5-1.fc38.i686.rpm: Already downloaded               
[SKIPPED] libselinux-3.5-0.rc1.1.fc38.i686.rpm: Already downloaded             
[SKIPPED] libsemanage-3.5-0.rc1.1.fc38.i686.rpm: Already downloaded            
[SKIPPED] libsepol-3.5-0.rc1.1.fc38.i686.rpm: Already downloaded               
[SKIPPED] libsmartcols-2.38.1-3.fc38.i686.rpm: Already downloaded              
[SKIPPED] libuuid-2.38.1-3.fc38.i686.rpm: Already downloaded                   
[SKIPPED] libzstd-1.5.2-3.fc37.i686.rpm: Already downloaded                    
[SKIPPED] lua-srpm-macros-1-7.fc37.noarch.rpm: Already downloaded              
[SKIPPED] nim-srpm-macros-3-7.fc37.noarch.rpm: Already downloaded              
[SKIPPED] ocaml-srpm-macros-7-2.fc37.noarch.rpm: Already downloaded            
[SKIPPED] openblas-srpm-macros-2-12.fc37.noarch.rpm: Already downloaded        
[SKIPPED] package-notes-srpm-macros-0.5-6.fc38.noarch.rpm: Already downloaded  
[SKIPPED] perl-srpm-macros-1-47.fc38.noarch.rpm: Already downloaded            
[SKIPPED] publicsuffix-list-dafsa-20221208-1.fc38.noarch.rpm: Already downloaded
[SKIPPED] python-srpm-macros-3.11-6.fc38.noarch.rpm: Already downloaded        
[SKIPPED] redhat-rpm-config-236-1.fc38.noarch.rpm: Already downloaded          
[SKIPPED] rust-srpm-macros-23-1.fc38.noarch.rpm: Already downloaded            
[SKIPPED] sed-4.8-11.fc37.i686.rpm: Already downloaded                         
[SKIPPED] setup-2.14.3-1.fc38.noarch.rpm: Already downloaded                   
[SKIPPED] shadow-utils-4.13-3.fc38.i686.rpm: Already downloaded                
[SKIPPED] sqlite-libs-3.40.0-1.fc38.i686.rpm: Already downloaded               
[SKIPPED] systemd-libs-252.4-598.fc38.i686.rpm: Already downloaded             
[SKIPPED] tar-1.34-5.fc38.i686.rpm: Already downloaded                         
[SKIPPED] tzdata-2022g-1.fc38.noarch.rpm: Already downloaded                   
[SKIPPED] unzip-6.0-58.fc38.i686.rpm: Already downloaded                       
[SKIPPED] util-linux-2.38.1-3.fc38.i686.rpm: Already downloaded                
[SKIPPED] util-linux-core-2.38.1-3.fc38.i686.rpm: Already downloaded           
[SKIPPED] which-2.21-36.fc38.i686.rpm: Already downloaded                      
[SKIPPED] xxhash-libs-0.8.1-3.fc37.i686.rpm: Already downloaded                
[SKIPPED] xz-5.2.9-1.fc38.i686.rpm: Already downloaded                         
[SKIPPED] xz-libs-5.2.9-1.fc38.i686.rpm: Already downloaded                    
[SKIPPED] zip-3.0-35.fc38.i686.rpm: Already downloaded                         
[SKIPPED] zlib-1.2.13-1.fc38.i686.rpm: Already downloaded                      
[SKIPPED] zstd-1.5.2-3.fc37.i686.rpm: Already downloaded                       
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
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warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.14.3-1.fc38.noarch                          20/153 
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  Verifying        : fedora-repos-rawhide-38-0.3.noarch                 101/153 
  Verifying        : filesystem-3.18-2.fc37.i686                        102/153 
  Verifying        : fonts-srpm-macros-1:2.0.5-10.fc38.noarch           103/153 
  Verifying        : fpc-srpm-macros-1.3-6.fc37.noarch                  104/153 
  Verifying        : gdb-minimal-12.1-10.fc38.i686                      105/153 
  Verifying        : ghc-srpm-macros-1.5.0-7.fc37.noarch                106/153 
  Verifying        : glibc-2.36.9000-19.fc38.i686                       107/153 
  Verifying        : glibc-common-2.36.9000-19.fc38.i686                108/153 
  Verifying        : glibc-gconv-extra-2.36.9000-19.fc38.i686           109/153 
  Verifying        : glibc-minimal-langpack-2.36.9000-19.fc38.i686      110/153 
  Verifying        : gnat-srpm-macros-4-16.fc37.noarch                  111/153 
  Verifying        : go-srpm-macros-3.2.0-1.fc38.noarch                 112/153 
  Verifying        : info-7.0.1-1.fc38.i686                             113/153 
  Verifying        : kernel-srpm-macros-1.0-15.fc37.noarch              114/153 
  Verifying        : libblkid-2.38.1-3.fc38.i686                        115/153 
  Verifying        : libcom_err-1.46.5-3.fc37.i686                      116/153 
  Verifying        : libfdisk-2.38.1-3.fc38.i686                        117/153 
  Verifying        : libmount-2.38.1-3.fc38.i686                        118/153 
  Verifying        : libpsl-0.21.2-1.fc38.i686                          119/153 
  Verifying        : libpwquality-1.4.5-1.fc38.i686                     120/153 
  Verifying        : libselinux-3.5-0.rc1.1.fc38.i686                   121/153 
  Verifying        : libsemanage-3.5-0.rc1.1.fc38.i686                  122/153 
  Verifying        : libsepol-3.5-0.rc1.1.fc38.i686                     123/153 
  Verifying        : libsmartcols-2.38.1-3.fc38.i686                    124/153 
  Verifying        : libuuid-2.38.1-3.fc38.i686                         125/153 
  Verifying        : libzstd-1.5.2-3.fc37.i686                          126/153 
  Verifying        : lua-srpm-macros-1-7.fc37.noarch                    127/153 
  Verifying        : nim-srpm-macros-3-7.fc37.noarch                    128/153 
  Verifying        : ocaml-srpm-macros-7-2.fc37.noarch                  129/153 
  Verifying        : openblas-srpm-macros-2-12.fc37.noarch              130/153 
  Verifying        : package-notes-srpm-macros-0.5-6.fc38.noarch        131/153 
  Verifying        : perl-srpm-macros-1-47.fc38.noarch                  132/153 
  Verifying        : publicsuffix-list-dafsa-20221208-1.fc38.noarch     133/153 
  Verifying        : python-srpm-macros-3.11-6.fc38.noarch              134/153 
  Verifying        : redhat-rpm-config-236-1.fc38.noarch                135/153 
  Verifying        : rust-srpm-macros-23-1.fc38.noarch                  136/153 
  Verifying        : sed-4.8-11.fc37.i686                               137/153 
  Verifying        : setup-2.14.3-1.fc38.noarch                         138/153 
  Verifying        : shadow-utils-2:4.13-3.fc38.i686                    139/153 
  Verifying        : sqlite-libs-3.40.0-1.fc38.i686                     140/153 
  Verifying        : systemd-libs-252.4-598.fc38.i686                   141/153 
  Verifying        : tar-2:1.34-5.fc38.i686                             142/153 
  Verifying        : tzdata-2022g-1.fc38.noarch                         143/153 
  Verifying        : unzip-6.0-58.fc38.i686                             144/153 
  Verifying        : util-linux-2.38.1-3.fc38.i686                      145/153 
  Verifying        : util-linux-core-2.38.1-3.fc38.i686                 146/153 
  Verifying        : which-2.21-36.fc38.i686                            147/153 
  Verifying        : xxhash-libs-0.8.1-3.fc37.i686                      148/153 
  Verifying        : xz-5.2.9-1.fc38.i686                               149/153 
  Verifying        : xz-libs-5.2.9-1.fc38.i686                          150/153 
  Verifying        : zip-3.0-35.fc38.i686                               151/153 
  Verifying        : zlib-1.2.13-1.fc38.i686                            152/153 
  Verifying        : zstd-1.5.2-3.fc37.i686                             153/153 

Installed:
  alternatives-1.21-1.fc38.i686                                                 
  ansible-srpm-macros-1-8.1.fc38.noarch                                         
  audit-libs-3.0.9-2.fc38.i686                                                  
  authselect-1.4.2-1.fc38.i686                                                  
  authselect-libs-1.4.2-1.fc38.i686                                             
  basesystem-11-14.fc37.noarch                                                  
  bash-5.2.9-3.fc38.i686                                                        
  binutils-2.39-6.fc38.i686                                                     
  binutils-gold-2.39-6.fc38.i686                                                
  bzip2-1.0.8-12.fc38.i686                                                      
  bzip2-libs-1.0.8-12.fc38.i686                                                 
  ca-certificates-2022.2.54-5.fc37.noarch                                       
  coreutils-9.1-8.fc38.i686                                                     
  coreutils-common-9.1-8.fc38.i686                                              
  cpio-2.13-13.fc38.i686                                                        
  cracklib-2.9.7-30.fc38.i686                                                   
  crypto-policies-20221215-1.gita4c31a3.fc38.noarch                             
  curl-7.87.0-1.fc38.i686                                                       
  cyrus-sasl-lib-2.1.28-8.fc38.i686                                             
  debugedit-5.0-5.fc37.i686                                                     
  diffutils-3.8-3.fc38.i686                                                     
  dwz-0.15-1.fc38.i686                                                          
  ed-1.18-2.fc38.i686                                                           
  efi-srpm-macros-5-6.fc37.noarch                                               
  elfutils-0.188-3.fc38.i686                                                    
  elfutils-debuginfod-client-0.188-3.fc38.i686                                  
  elfutils-default-yama-scope-0.188-3.fc38.noarch                               
  elfutils-libelf-0.188-3.fc38.i686                                             
  elfutils-libs-0.188-3.fc38.i686                                               
  fedora-gpg-keys-38-0.3.noarch                                                 
  fedora-release-38-0.6.noarch                                                  
  fedora-release-common-38-0.6.noarch                                           
  fedora-release-identity-basic-38-0.6.noarch                                   
  fedora-repos-38-0.3.noarch                                                    
  fedora-repos-rawhide-38-0.3.noarch                                            
  file-5.42-4.fc38.i686                                                         
  file-libs-5.42-4.fc38.i686                                                    
  filesystem-3.18-2.fc37.i686                                                   
  findutils-1:4.9.0-2.fc38.i686                                                 
  fonts-srpm-macros-1:2.0.5-10.fc38.noarch                                      
  fpc-srpm-macros-1.3-6.fc37.noarch                                             
  gawk-5.1.1-4.fc38.i686                                                        
  gdb-minimal-12.1-10.fc38.i686                                                 
  gdbm-libs-1:1.23-2.fc38.i686                                                  
  ghc-srpm-macros-1.5.0-7.fc37.noarch                                           
  glibc-2.36.9000-19.fc38.i686                                                  
  glibc-common-2.36.9000-19.fc38.i686                                           
  glibc-gconv-extra-2.36.9000-19.fc38.i686                                      
  glibc-minimal-langpack-2.36.9000-19.fc38.i686                                 
  gmp-1:6.2.1-3.fc38.i686                                                       
  gnat-srpm-macros-4-16.fc37.noarch                                             
  go-srpm-macros-3.2.0-1.fc38.noarch                                            
  grep-3.8-1.fc38.i686                                                          
  gzip-1.12-2.fc38.i686                                                         
  info-7.0.1-1.fc38.i686                                                        
  jansson-2.13.1-5.fc38.i686                                                    
  kernel-srpm-macros-1.0-15.fc37.noarch                                         
  keyutils-libs-1.6.1-5.fc38.i686                                               
  krb5-libs-1.20.1-3.fc38.i686                                                  
  libacl-2.3.1-4.fc38.i686                                                      
  libarchive-3.6.1-3.fc38.i686                                                  
  libattr-2.5.1-5.fc38.i686                                                     
  libblkid-2.38.1-3.fc38.i686                                                   
  libbrotli-1.0.9-9.fc38.i686                                                   
  libcap-2.48-5.fc38.i686                                                       
  libcap-ng-0.8.3-4.fc38.i686                                                   
  libcom_err-1.46.5-3.fc37.i686                                                 
  libcurl-7.87.0-1.fc38.i686                                                    
  libdb-5.3.28-54.fc38.i686                                                     
  libeconf-0.4.0-4.fc38.i686                                                    
  libevent-2.1.12-7.fc38.i686                                                   
  libfdisk-2.38.1-3.fc38.i686                                                   
  libffi-3.4.4-1.fc38.i686                                                      
  libgcc-13.0.0-0.4.fc38.i686                                                   
  libgomp-13.0.0-0.4.fc38.i686                                                  
  libidn2-2.3.4-1.fc38.i686                                                     
  libmount-2.38.1-3.fc38.i686                                                   
  libnghttp2-1.51.0-1.fc38.i686                                                 
  libnsl2-2.0.0-4.fc38.i686                                                     
  libpkgconf-1.8.0-3.fc38.i686                                                  
  libpsl-0.21.2-1.fc38.i686                                                     
  libpwquality-1.4.5-1.fc38.i686                                                
  libselinux-3.5-0.rc1.1.fc38.i686                                              
  libsemanage-3.5-0.rc1.1.fc38.i686                                             
  libsepol-3.5-0.rc1.1.fc38.i686                                                
  libsigsegv-2.14-3.fc38.i686                                                   
  libsmartcols-2.38.1-3.fc38.i686                                               
  libssh-0.10.4-2.fc38.i686                                                     
  libssh-config-0.10.4-2.fc38.noarch                                            
  libstdc++-13.0.0-0.4.fc38.i686                                                
  libtasn1-4.19.0-1.fc38.i686                                                   
  libtirpc-1.3.3-0.fc38.i686                                                    
  libunistring-1.0-2.fc38.i686                                                  
  libutempter-1.2.1-7.fc38.i686                                                 
  libuuid-2.38.1-3.fc38.i686                                                    
  libverto-0.3.2-4.fc38.i686                                                    
  libxcrypt-4.4.33-5.fc38.i686                                                  
  libxml2-2.10.3-2.fc38.i686                                                    
  libzstd-1.5.2-3.fc37.i686                                                     
  lua-libs-5.4.4-6.fc38.i686                                                    
  lua-srpm-macros-1-7.fc37.noarch                                               
  lz4-libs-1.9.3-5.fc38.i686                                                    
  mpfr-4.1.1-2.fc38.i686                                                        
  ncurses-base-6.3-5.20221126.fc38.noarch                                       
  ncurses-libs-6.3-5.20221126.fc38.i686                                         
  nettle-3.8-2.fc38.i686                                                        
  nim-srpm-macros-3-7.fc37.noarch                                               
  ocaml-srpm-macros-7-2.fc37.noarch                                             
  openblas-srpm-macros-2-12.fc37.noarch                                         
  openldap-2.6.3-1.fc38.i686                                                    
  openssl-libs-1:3.0.5-6.fc38.i686                                              
  p11-kit-0.24.1-5.fc38.i686                                                    
  p11-kit-trust-0.24.1-5.fc38.i686                                              
  package-notes-srpm-macros-0.5-6.fc38.noarch                                   
  pam-1.5.2-15.fc38.i686                                                        
  pam-libs-1.5.2-15.fc38.i686                                                   
  patch-2.7.6-17.fc38.i686                                                      
  pcre2-10.40-1.fc38.1.i686                                                     
  pcre2-syntax-10.40-1.fc38.1.noarch                                            
  perl-srpm-macros-1-47.fc38.noarch                                             
  pkgconf-1.8.0-3.fc38.i686                                                     
  pkgconf-m4-1.8.0-3.fc38.noarch                                                
  pkgconf-pkg-config-1.8.0-3.fc38.i686                                          
  popt-1.19-1.fc38.i686                                                         
  publicsuffix-list-dafsa-20221208-1.fc38.noarch                                
  python-srpm-macros-3.11-6.fc38.noarch                                         
  qt5-srpm-macros-5.15.7-1.fc38.noarch                                          
  readline-8.2-2.fc38.i686                                                      
  redhat-rpm-config-236-1.fc38.noarch                                           
  rpm-4.18.0-8.fc38.i686                                                        
  rpm-build-4.18.0-8.fc38.i686                                                  
  rpm-build-libs-4.18.0-8.fc38.i686                                             
  rpm-libs-4.18.0-8.fc38.i686                                                   
  rpm-sequoia-1.2.0-1.fc38.i686                                                 
  rpmautospec-rpm-macros-0.3.1-1.fc38.noarch                                    
  rust-srpm-macros-23-1.fc38.noarch                                             
  sed-4.8-11.fc37.i686                                                          
  setup-2.14.3-1.fc38.noarch                                                    
  shadow-utils-2:4.13-3.fc38.i686                                               
  sqlite-libs-3.40.0-1.fc38.i686                                                
  systemd-libs-252.4-598.fc38.i686                                              
  tar-2:1.34-5.fc38.i686                                                        
  tzdata-2022g-1.fc38.noarch                                                    
  unzip-6.0-58.fc38.i686                                                        
  util-linux-2.38.1-3.fc38.i686                                                 
  util-linux-core-2.38.1-3.fc38.i686                                            
  which-2.21-36.fc38.i686                                                       
  xxhash-libs-0.8.1-3.fc37.i686                                                 
  xz-5.2.9-1.fc38.i686                                                          
  xz-libs-5.2.9-1.fc38.i686                                                     
  zip-3.0-35.fc38.i686                                                          
  zlib-1.2.13-1.fc38.i686                                                       
  zstd-1.5.2-3.fc37.i686                                                        

Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: qt5-srpm-macros-5.15.7-1.fc38.noarch
rpm-sequoia-1.2.0-1.fc38.i686
rpm-libs-4.18.0-8.fc38.i686
libattr-2.5.1-5.fc38.i686
libidn2-2.3.4-1.fc38.i686
glibc-2.36.9000-19.fc38.i686
audit-libs-3.0.9-2.fc38.i686
libuuid-2.38.1-3.fc38.i686
ed-1.18-2.fc38.i686
tzdata-2022g-1.fc38.noarch
coreutils-9.1-8.fc38.i686
lua-libs-5.4.4-6.fc38.i686
pkgconf-m4-1.8.0-3.fc38.noarch
setup-2.14.3-1.fc38.noarch
glibc-common-2.36.9000-19.fc38.i686
libpkgconf-1.8.0-3.fc38.i686
xxhash-libs-0.8.1-3.fc37.i686
krb5-libs-1.20.1-3.fc38.i686
openblas-srpm-macros-2-12.fc37.noarch
go-srpm-macros-3.2.0-1.fc38.noarch
sed-4.8-11.fc37.i686
rust-srpm-macros-23-1.fc38.noarch
readline-8.2-2.fc38.i686
libpwquality-1.4.5-1.fc38.i686
fedora-release-identity-basic-38-0.6.noarch
debugedit-5.0-5.fc37.i686
fedora-repos-38-0.3.noarch
gnat-srpm-macros-4-16.fc37.noarch
libtirpc-1.3.3-0.fc38.i686
libcurl-7.87.0-1.fc38.i686
libzstd-1.5.2-3.fc37.i686
ncurses-base-6.3-5.20221126.fc38.noarch
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
kernel-srpm-macros-1.0-15.fc37.noarch
curl-7.87.0-1.fc38.i686
libsemanage-3.5-0.rc1.1.fc38.i686
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
libselinux-3.5-0.rc1.1.fc38.i686
pkgconf-1.8.0-3.fc38.i686
gdb-minimal-12.1-10.fc38.i686
libeconf-0.4.0-4.fc38.i686
fedora-release-38-0.6.noarch
authselect-libs-1.4.2-1.fc38.i686
bzip2-libs-1.0.8-12.fc38.i686
package-notes-srpm-macros-0.5-6.fc38.noarch
libsepol-3.5-0.rc1.1.fc38.i686
findutils-4.9.0-2.fc38.i686
efi-srpm-macros-5-6.fc37.noarch
libsigsegv-2.14-3.fc38.i686
gawk-5.1.1-4.fc38.i686
dwz-0.15-1.fc38.i686
systemd-libs-252.4-598.fc38.i686
glibc-gconv-extra-2.36.9000-19.fc38.i686
libbrotli-1.0.9-9.fc38.i686
libstdc++-13.0.0-0.4.fc38.i686
fedora-gpg-keys-38-0.3.noarch
diffutils-3.8-3.fc38.i686
fedora-repos-rawhide-38-0.3.noarch
pkgconf-pkg-config-1.8.0-3.fc38.i686
util-linux-core-2.38.1-3.fc38.i686
unzip-6.0-58.fc38.i686
libblkid-2.38.1-3.fc38.i686
libcom_err-1.46.5-3.fc37.i686
libunistring-1.0-2.fc38.i686
ocaml-srpm-macros-7-2.fc37.noarch
xz-5.2.9-1.fc38.i686
binutils-2.39-6.fc38.i686
pcre2-10.40-1.fc38.1.i686
libutempter-1.2.1-7.fc38.i686
ansible-srpm-macros-1-8.1.fc38.noarch
openssl-libs-3.0.5-6.fc38.i686
shadow-utils-4.13-3.fc38.i686
libssh-0.10.4-2.fc38.i686
tar-1.34-5.fc38.i686
elfutils-libelf-0.188-3.fc38.i686
libffi-3.4.4-1.fc38.i686
libcap-2.48-5.fc38.i686
cpio-2.13-13.fc38.i686
cyrus-sasl-lib-2.1.28-8.fc38.i686
p11-kit-0.24.1-5.fc38.i686
which-2.21-36.fc38.i686
publicsuffix-list-dafsa-20221208-1.fc38.noarch
elfutils-debuginfod-client-0.188-3.fc38.i686
libevent-2.1.12-7.fc38.i686
libmount-2.38.1-3.fc38.i686
pam-1.5.2-15.fc38.i686
redhat-rpm-config-236-1.fc38.noarch
gdbm-libs-1.23-2.fc38.i686
jansson-2.13.1-5.fc38.i686
keyutils-libs-1.6.1-5.fc38.i686
perl-srpm-macros-1-47.fc38.noarch
fpc-srpm-macros-1.3-6.fc37.noarch
sqlite-libs-3.40.0-1.fc38.i686
libverto-0.3.2-4.fc38.i686
zip-3.0-35.fc38.i686
p11-kit-trust-0.24.1-5.fc38.i686
cracklib-2.9.7-30.fc38.i686
lua-srpm-macros-1-7.fc37.noarch
bzip2-1.0.8-12.fc38.i686
gzip-1.12-2.fc38.i686
util-linux-2.38.1-3.fc38.i686
fedora-release-common-38-0.6.noarch
libpsl-0.21.2-1.fc38.i686
libgcc-13.0.0-0.4.fc38.i686
libtasn1-4.19.0-1.fc38.i686
elfutils-0.188-3.fc38.i686
fonts-srpm-macros-2.0.5-10.fc38.noarch
glibc-minimal-langpack-2.36.9000-19.fc38.i686
gmp-6.2.1-3.fc38.i686
authselect-1.4.2-1.fc38.i686
libxcrypt-4.4.33-5.fc38.i686
nettle-3.8-2.fc38.i686
python-srpm-macros-3.11-6.fc38.noarch
libarchive-3.6.1-3.fc38.i686
ca-certificates-2022.2.54-5.fc37.noarch
libssh-config-0.10.4-2.fc38.noarch
file-5.42-4.fc38.i686
mpfr-4.1.1-2.fc38.i686
zstd-1.5.2-3.fc37.i686
libfdisk-2.38.1-3.fc38.i686
lz4-libs-1.9.3-5.fc38.i686
libsmartcols-2.38.1-3.fc38.i686
pam-libs-1.5.2-15.fc38.i686
info-7.0.1-1.fc38.i686
nim-srpm-macros-3-7.fc37.noarch
grep-3.8-1.fc38.i686
libxml2-2.10.3-2.fc38.i686
ghc-srpm-macros-1.5.0-7.fc37.noarch
xz-libs-5.2.9-1.fc38.i686
libacl-2.3.1-4.fc38.i686
file-libs-5.42-4.fc38.i686
libnghttp2-1.51.0-1.fc38.i686
libgomp-13.0.0-0.4.fc38.i686
rpm-build-4.18.0-8.fc38.i686
elfutils-default-yama-scope-0.188-3.fc38.noarch
libcap-ng-0.8.3-4.fc38.i686
patch-2.7.6-17.fc38.i686
binutils-gold-2.39-6.fc38.i686
basesystem-11-14.fc37.noarch
ncurses-libs-6.3-5.20221126.fc38.i686
filesystem-3.18-2.fc37.i686
bash-5.2.9-3.fc38.i686
alternatives-1.21-1.fc38.i686
rpm-4.18.0-8.fc38.i686
popt-1.19-1.fc38.i686
elfutils-libs-0.188-3.fc38.i686
pcre2-syntax-10.40-1.fc38.1.noarch
openldap-2.6.3-1.fc38.i686
zlib-1.2.13-1.fc38.i686
libnsl2-2.0.0-4.fc38.i686
rpm-build-libs-4.18.0-8.fc38.i686
coreutils-common-9.1-8.fc38.i686
libdb-5.3.28-54.fc38.i686
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1660521600
Wrote: /builddir/build/SRPMS/samtools-1.15.1-1.fc38.src.rpm
Finish: rpmbuild -bs
cp: ‘var/lib/mock/fedora-rawhide-i686-1672304886.477783/root/var/log’: No such file or directory
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1672304886.477783/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-i686-1672304886.477783/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-i686-1672304886.477783/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-o77d_z3o/samtools/samtools.spec) Config(child) 1 minutes 8 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=115200): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/samtools-1.15.1-1.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1672304886.477783 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/samtools-1.15.1-1.fc38.src.rpm)  Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1672304886.477783/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1672304886.477783/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1672304886.477783/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  12 kB/s | 3.0 kB     00:00    
Copr repository                                  29 MB/s |  36 MB     00:01    
Additional repo https_jakub_fedorapeople_org_fe  10 kB/s | 3.0 kB     00:00    
local                                            14 kB/s | 3.8 kB     00:00    
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for samtools-1.15.1-1.fc38.src.rpm
Start: build setup for samtools-1.15.1-1.fc38.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1660521600
Wrote: /builddir/build/SRPMS/samtools-1.15.1-1.fc38.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  24 kB/s | 3.0 kB     00:00    
Additional repo https_jakub_fedorapeople_org_fe 8.1 kB/s | 3.0 kB     00:00    
local                                            14 kB/s | 3.8 kB     00:00    
Dependencies resolved.
============================================================================================================
 Package                  Arch    Version              Repository                                       Size
============================================================================================================
Installing:
 gcc                      i686    13.0.0-0.4.fc38      https_jakub_fedorapeople_org_fedora_gcc13_arch   34 M
 htslib-devel             i686    1.15.1-1.fc38        copr_base                                       100 k
 htslib-tools             i686    1.15.1-1.fc38        copr_base                                       577 k
 make                     i686    1:4.3-11.fc38        copr_base                                       542 k
 ncurses-devel            i686    6.3-5.20221126.fc38  copr_base                                       522 k
 perl-FindBin             noarch  1.53-492.fc38        copr_base                                        18 k
 perl-Getopt-Long         noarch  1:2.54-1.fc38        local                                            60 k
 perl-interpreter         i686    4:5.36.0-492.fc38    copr_base                                        76 k
 perl-lib                 i686    0.65-492.fc38        copr_base                                        18 k
 zlib-devel               i686    1.2.13-1.fc38        local                                            45 k
Installing dependencies:
 annobin-docs             noarch  10.99-1.0.1.fc38     https_jakub_fedorapeople_org_fedora_gcc13_arch   93 k
 annobin-plugin-gcc       i686    10.99-1.0.1.fc38     https_jakub_fedorapeople_org_fedora_gcc13_arch  889 k
 cpp                      i686    13.0.0-0.4.fc38      https_jakub_fedorapeople_org_fedora_gcc13_arch   11 M
 gc                       i686    8.2.2-1.fc38         copr_base                                       113 k
 gcc-plugin-annobin       i686    13.0.0-0.4.fc38      https_jakub_fedorapeople_org_fedora_gcc13_arch   30 k
 glibc-devel              i686    2.36.9000-19.fc38    local                                            43 k
 glibc-headers-x86        noarch  2.36.9000-19.fc38    local                                           450 k
 groff-base               i686    1.22.4-10.fc38       copr_base                                       1.0 M
 guile22                  i686    2.2.7-6.fc38         copr_base                                       6.5 M
 htslib                   i686    1.15.1-1.fc38        copr_base                                       527 k
 kernel-headers           i686    6.1.0-1.fc38         local                                           1.4 M
 libasan                  i686    13.0.0-0.4.fc38      https_jakub_fedorapeople_org_fedora_gcc13_arch  491 k
 libatomic                i686    13.0.0-0.4.fc38      https_jakub_fedorapeople_org_fedora_gcc13_arch   17 k
 libmpc                   i686    1.2.1-5.fc38         copr_base                                        66 k
 libtool-ltdl             i686    2.4.7-3.0.1.fc38     https_jakub_fedorapeople_org_fedora_gcc13_arch   39 k
 libubsan                 i686    13.0.0-0.4.fc38      https_jakub_fedorapeople_org_fedora_gcc13_arch  219 k
 libxcrypt-devel          i686    4.4.33-5.fc38        copr_base                                        31 k
 ncurses                  i686    6.3-5.20221126.fc38  copr_base                                       409 k
 ncurses-c++-libs         i686    6.3-5.20221126.fc38  copr_base                                        40 k
 perl-Carp                noarch  1.52-489.fc37        local                                            29 k
 perl-Class-Struct        noarch  0.66-492.fc38        copr_base                                        26 k
 perl-DynaLoader          i686    1.52-492.fc38        copr_base                                        30 k
 perl-Encode              i686    4:3.19-492.fc38      copr_base                                       1.2 M
 perl-Errno               i686    1.36-492.fc38        copr_base                                        18 k
 perl-Exporter            noarch  5.77-489.fc37        local                                            31 k
 perl-Fcntl               i686    1.15-492.fc38        copr_base                                        24 k
 perl-File-Basename       noarch  2.85-492.fc38        copr_base                                        21 k
 perl-File-Path           noarch  2.18-489.fc37        local                                            35 k
 perl-File-Temp           noarch  1:0.231.100-489.fc37 local                                            59 k
 perl-File-stat           noarch  1.12-492.fc38        copr_base                                        21 k
 perl-Getopt-Std          noarch  1.13-492.fc38        copr_base                                        19 k
 perl-HTTP-Tiny           noarch  0.082-1.fc37         local                                            55 k
 perl-IO                  i686    1.50-492.fc38        copr_base                                        92 k
 perl-IPC-Open3           noarch  1.22-492.fc38        copr_base                                        26 k
 perl-MIME-Base64         i686    3.16-489.fc38        copr_base                                        31 k
 perl-POSIX               i686    2.03-492.fc38        copr_base                                       105 k
 perl-PathTools           i686    3.84-489.fc38        copr_base                                        83 k
 perl-Pod-Escapes         noarch  1:1.07-489.fc37      local                                            20 k
 perl-Pod-Perldoc         noarch  3.28.01-490.fc37     local                                            84 k
 perl-Pod-Simple          noarch  1:3.43-490.fc37      local                                           215 k
 perl-Pod-Usage           noarch  4:2.03-3.fc37        local                                            40 k
 perl-Scalar-List-Utils   i686    5:1.63-489.fc38      copr_base                                        75 k
 perl-SelectSaver         noarch  1.02-492.fc38        copr_base                                        15 k
 perl-Socket              i686    4:2.036-1.fc38       copr_base                                        56 k
 perl-Storable            i686    1:3.26-489.fc38      copr_base                                        99 k
 perl-Symbol              noarch  1.09-492.fc38        copr_base                                        18 k
 perl-Term-ANSIColor      noarch  5.01-490.fc37        local                                            48 k
 perl-Term-Cap            noarch  1.17-489.fc37        local                                            22 k
 perl-Text-ParseWords     noarch  3.31-489.fc37        local                                            16 k
 perl-Text-Tabs+Wrap      noarch  2021.0814-489.fc37   local                                            22 k
 perl-Time-Local          noarch  2:1.300-489.fc37     local                                            33 k
 perl-constant            noarch  1.33-490.fc37        local                                            23 k
 perl-if                  noarch  0.61.000-492.fc38    copr_base                                        18 k
 perl-libs                i686    4:5.36.0-492.fc38    copr_base                                       2.2 M
 perl-mro                 i686    1.26-492.fc38        copr_base                                        33 k
 perl-overload            noarch  1.35-492.fc38        copr_base                                        49 k
 perl-overloading         noarch  0.02-492.fc38        copr_base                                        16 k
 perl-parent              noarch  1:0.239-1.fc38       local                                            14 k
 perl-podlators           noarch  1:5.00-1.fc38        local                                           122 k
 perl-vars                noarch  1.05-492.fc38        copr_base                                        17 k

Transaction Summary
============================================================================================================
Install  70 Packages

Total size: 64 M
Total download size: 1.8 M
Installed size: 202 M
Downloading Packages:
[SKIPPED] gc-8.2.2-1.fc38.i686.rpm: Already downloaded                         
[SKIPPED] groff-base-1.22.4-10.fc38.i686.rpm: Already downloaded               
[SKIPPED] guile22-2.2.7-6.fc38.i686.rpm: Already downloaded                    
[SKIPPED] libmpc-1.2.1-5.fc38.i686.rpm: Already downloaded                     
[SKIPPED] libxcrypt-devel-4.4.33-5.fc38.i686.rpm: Already downloaded           
[SKIPPED] make-4.3-11.fc38.i686.rpm: Already downloaded                        
[SKIPPED] ncurses-6.3-5.20221126.fc38.i686.rpm: Already downloaded             
[SKIPPED] perl-Class-Struct-0.66-492.fc38.noarch.rpm: Already downloaded       
[SKIPPED] perl-DynaLoader-1.52-492.fc38.i686.rpm: Already downloaded           
[SKIPPED] perl-Encode-3.19-492.fc38.i686.rpm: Already downloaded               
[SKIPPED] perl-Errno-1.36-492.fc38.i686.rpm: Already downloaded                
[SKIPPED] perl-Fcntl-1.15-492.fc38.i686.rpm: Already downloaded                
[SKIPPED] perl-File-Basename-2.85-492.fc38.noarch.rpm: Already downloaded      
[SKIPPED] perl-File-stat-1.12-492.fc38.noarch.rpm: Already downloaded          
[SKIPPED] perl-Getopt-Std-1.13-492.fc38.noarch.rpm: Already downloaded         
[SKIPPED] perl-IO-1.50-492.fc38.i686.rpm: Already downloaded                   
[SKIPPED] perl-IPC-Open3-1.22-492.fc38.noarch.rpm: Already downloaded          
[SKIPPED] perl-MIME-Base64-3.16-489.fc38.i686.rpm: Already downloaded          
[SKIPPED] perl-POSIX-2.03-492.fc38.i686.rpm: Already downloaded                
[SKIPPED] perl-PathTools-3.84-489.fc38.i686.rpm: Already downloaded            
[SKIPPED] perl-Scalar-List-Utils-1.63-489.fc38.i686.rpm: Already downloaded    
[SKIPPED] perl-SelectSaver-1.02-492.fc38.noarch.rpm: Already downloaded        
[SKIPPED] perl-Socket-2.036-1.fc38.i686.rpm: Already downloaded                
[SKIPPED] perl-Storable-3.26-489.fc38.i686.rpm: Already downloaded             
[SKIPPED] perl-Symbol-1.09-492.fc38.noarch.rpm: Already downloaded             
[SKIPPED] perl-if-0.61.000-492.fc38.noarch.rpm: Already downloaded             
[SKIPPED] perl-interpreter-5.36.0-492.fc38.i686.rpm: Already downloaded        
[SKIPPED] perl-libs-5.36.0-492.fc38.i686.rpm: Already downloaded               
[SKIPPED] perl-mro-1.26-492.fc38.i686.rpm: Already downloaded                  
[SKIPPED] perl-overload-1.35-492.fc38.noarch.rpm: Already downloaded           
[SKIPPED] perl-overloading-0.02-492.fc38.noarch.rpm: Already downloaded        
[SKIPPED] perl-vars-1.05-492.fc38.noarch.rpm: Already downloaded               
[SKIPPED] annobin-docs-10.99-1.0.1.fc38.noarch.rpm: Already downloaded         
[SKIPPED] annobin-plugin-gcc-10.99-1.0.1.fc38.i686.rpm: Already downloaded     
[SKIPPED] cpp-13.0.0-0.4.fc38.i686.rpm: Already downloaded                     
[SKIPPED] gcc-13.0.0-0.4.fc38.i686.rpm: Already downloaded                     
[SKIPPED] gcc-plugin-annobin-13.0.0-0.4.fc38.i686.rpm: Already downloaded      
[SKIPPED] libasan-13.0.0-0.4.fc38.i686.rpm: Already downloaded                 
[SKIPPED] libatomic-13.0.0-0.4.fc38.i686.rpm: Already downloaded               
[SKIPPED] libtool-ltdl-2.4.7-3.0.1.fc38.i686.rpm: Already downloaded           
[SKIPPED] libubsan-13.0.0-0.4.fc38.i686.rpm: Already downloaded                
[SKIPPED] glibc-devel-2.36.9000-19.fc38.i686.rpm: Already downloaded           
[SKIPPED] glibc-headers-x86-2.36.9000-19.fc38.noarch.rpm: Already downloaded   
[SKIPPED] kernel-headers-6.1.0-1.fc38.i686.rpm: Already downloaded             
[SKIPPED] perl-Carp-1.52-489.fc37.noarch.rpm: Already downloaded               
[SKIPPED] perl-Exporter-5.77-489.fc37.noarch.rpm: Already downloaded           
[SKIPPED] perl-File-Path-2.18-489.fc37.noarch.rpm: Already downloaded          
[SKIPPED] perl-File-Temp-0.231.100-489.fc37.noarch.rpm: Already downloaded     
[SKIPPED] perl-Getopt-Long-2.54-1.fc38.noarch.rpm: Already downloaded          
[SKIPPED] perl-HTTP-Tiny-0.082-1.fc37.noarch.rpm: Already downloaded           
[SKIPPED] perl-Pod-Escapes-1.07-489.fc37.noarch.rpm: Already downloaded        
[SKIPPED] perl-Pod-Perldoc-3.28.01-490.fc37.noarch.rpm: Already downloaded     
[SKIPPED] perl-Pod-Simple-3.43-490.fc37.noarch.rpm: Already downloaded         
[SKIPPED] perl-Pod-Usage-2.03-3.fc37.noarch.rpm: Already downloaded            
[SKIPPED] perl-Term-ANSIColor-5.01-490.fc37.noarch.rpm: Already downloaded     
[SKIPPED] perl-Term-Cap-1.17-489.fc37.noarch.rpm: Already downloaded           
[SKIPPED] perl-Text-ParseWords-3.31-489.fc37.noarch.rpm: Already downloaded    
[SKIPPED] perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Time-Local-1.300-489.fc37.noarch.rpm: Already downloaded        
[SKIPPED] perl-constant-1.33-490.fc37.noarch.rpm: Already downloaded           
[SKIPPED] perl-parent-0.239-1.fc38.noarch.rpm: Already downloaded              
[SKIPPED] perl-podlators-5.00-1.fc38.noarch.rpm: Already downloaded            
[SKIPPED] zlib-devel-1.2.13-1.fc38.i686.rpm: Already downloaded                
(64/70): htslib-devel-1.15.1-1.fc38.i686.rpm    327 kB/s | 100 kB     00:00    
(65/70): htslib-tools-1.15.1-1.fc38.i686.rpm    1.8 MB/s | 577 kB     00:00    
(66/70): htslib-1.15.1-1.fc38.i686.rpm          1.6 MB/s | 527 kB     00:00    
(67/70): ncurses-c++-libs-6.3-5.20221126.fc38.i 1.5 MB/s |  40 kB     00:00    
(68/70): ncurses-devel-6.3-5.20221126.fc38.i686  11 MB/s | 522 kB     00:00    
(69/70): perl-FindBin-1.53-492.fc38.noarch.rpm  421 kB/s |  18 kB     00:00    
(70/70): perl-lib-0.65-492.fc38.i686.rpm        472 kB/s |  18 kB     00:00    
--------------------------------------------------------------------------------
Total                                           3.9 MB/s | 1.8 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : libmpc-1.2.1-5.fc38.i686                              1/70 
  Installing       : htslib-1.15.1-1.fc38.i686                             2/70 
  Installing       : kernel-headers-6.1.0-1.fc38.i686                      3/70 
  Installing       : glibc-headers-x86-2.36.9000-19.fc38.noarch            4/70 
  Installing       : glibc-devel-2.36.9000-19.fc38.i686                    5/70 
  Installing       : libxcrypt-devel-4.4.33-5.fc38.i686                    6/70 
  Installing       : annobin-docs-10.99-1.0.1.fc38.noarch                  7/70 
  Installing       : cpp-13.0.0-0.4.fc38.i686                              8/70 
  Installing       : libubsan-13.0.0-0.4.fc38.i686                         9/70 
  Installing       : libtool-ltdl-2.4.7-3.0.1.fc38.i686                   10/70 
  Installing       : libatomic-13.0.0-0.4.fc38.i686                       11/70 
  Installing       : libasan-13.0.0-0.4.fc38.i686                         12/70 
  Installing       : ncurses-c++-libs-6.3-5.20221126.fc38.i686            13/70 
  Installing       : ncurses-6.3-5.20221126.fc38.i686                     14/70 
  Running scriptlet: groff-base-1.22.4-10.fc38.i686                       15/70 
  Installing       : groff-base-1.22.4-10.fc38.i686                       15/70 
  Running scriptlet: groff-base-1.22.4-10.fc38.i686                       15/70 
  Installing       : perl-if-0.61.000-492.fc38.noarch                     16/70 
  Installing       : perl-Pod-Escapes-1:1.07-489.fc37.noarch              17/70 
  Installing       : perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch        18/70 
  Installing       : perl-File-Path-2.18-489.fc37.noarch                  19/70 
  Installing       : perl-Time-Local-2:1.300-489.fc37.noarch              20/70 
  Installing       : perl-Class-Struct-0.66-492.fc38.noarch               21/70 
  Installing       : perl-POSIX-2.03-492.fc38.i686                        22/70 
  Installing       : perl-Term-ANSIColor-5.01-490.fc37.noarch             23/70 
  Installing       : perl-Term-Cap-1.17-489.fc37.noarch                   24/70 
  Installing       : perl-IPC-Open3-1.22-492.fc38.noarch                  25/70 
  Installing       : perl-File-Temp-1:0.231.100-489.fc37.noarch           26/70 
  Installing       : perl-HTTP-Tiny-0.082-1.fc37.noarch                   27/70 
  Installing       : perl-Pod-Simple-1:3.43-490.fc37.noarch               28/70 
  Installing       : perl-Symbol-1.09-492.fc38.noarch                     29/70 
  Installing       : perl-SelectSaver-1.02-492.fc38.noarch                30/70 
  Installing       : perl-Socket-4:2.036-1.fc38.i686                      31/70 
  Installing       : perl-File-stat-1.12-492.fc38.noarch                  32/70 
  Installing       : perl-podlators-1:5.00-1.fc38.noarch                  33/70 
  Installing       : perl-Pod-Perldoc-3.28.01-490.fc37.noarch             34/70 
  Installing       : perl-mro-1.26-492.fc38.i686                          35/70 
  Installing       : perl-Fcntl-1.15-492.fc38.i686                        36/70 
  Installing       : perl-overloading-0.02-492.fc38.noarch                37/70 
  Installing       : perl-Text-ParseWords-3.31-489.fc37.noarch            38/70 
  Installing       : perl-IO-1.50-492.fc38.i686                           39/70 
  Installing       : perl-Pod-Usage-4:2.03-3.fc37.noarch                  40/70 
  Installing       : perl-Getopt-Std-1.13-492.fc38.noarch                 41/70 
  Installing       : perl-MIME-Base64-3.16-489.fc38.i686                  42/70 
  Installing       : perl-Errno-1.36-492.fc38.i686                        43/70 
  Installing       : perl-File-Basename-2.85-492.fc38.noarch              44/70 
  Installing       : perl-Scalar-List-Utils-5:1.63-489.fc38.i686          45/70 
  Installing       : perl-overload-1.35-492.fc38.noarch                   46/70 
  Installing       : perl-vars-1.05-492.fc38.noarch                       47/70 
  Installing       : perl-Storable-1:3.26-489.fc38.i686                   48/70 
  Installing       : perl-constant-1.33-490.fc37.noarch                   49/70 
  Installing       : perl-parent-1:0.239-1.fc38.noarch                    50/70 
  Installing       : perl-Getopt-Long-1:2.54-1.fc38.noarch                51/70 
  Installing       : perl-DynaLoader-1.52-492.fc38.i686                   52/70 
  Installing       : perl-Carp-1.52-489.fc37.noarch                       53/70 
  Installing       : perl-Exporter-5.77-489.fc37.noarch                   54/70 
  Installing       : perl-PathTools-3.84-489.fc38.i686                    55/70 
  Installing       : perl-Encode-4:3.19-492.fc38.i686                     56/70 
  Installing       : perl-libs-4:5.36.0-492.fc38.i686                     57/70 
  Installing       : perl-interpreter-4:5.36.0-492.fc38.i686              58/70 
  Installing       : gc-8.2.2-1.fc38.i686                                 59/70 
  Installing       : perl-FindBin-1.53-492.fc38.noarch                    60/70 
  Installing       : perl-lib-0.65-492.fc38.i686                          61/70 
  Installing       : ncurses-devel-6.3-5.20221126.fc38.i686               62/70 
  Installing       : htslib-devel-1.15.1-1.fc38.i686                      63/70 
  Installing       : zlib-devel-1.2.13-1.fc38.i686                        64/70 
  Installing       : guile22-2.2.7-6.fc38.i686                            65/70 
  Installing       : make-1:4.3-11.fc38.i686                              66/70 
  Installing       : gcc-13.0.0-0.4.fc38.i686                             67/70 
  Running scriptlet: gcc-13.0.0-0.4.fc38.i686                             67/70 
  Installing       : annobin-plugin-gcc-10.99-1.0.1.fc38.i686             68/70 
  Running scriptlet: annobin-plugin-gcc-10.99-1.0.1.fc38.i686             68/70 
  Installing       : gcc-plugin-annobin-13.0.0-0.4.fc38.i686              69/70 
  Installing       : htslib-tools-1.15.1-1.fc38.i686                      70/70 
  Running scriptlet: htslib-tools-1.15.1-1.fc38.i686                      70/70 
  Verifying        : gc-8.2.2-1.fc38.i686                                  1/70 
  Verifying        : groff-base-1.22.4-10.fc38.i686                        2/70 
  Verifying        : guile22-2.2.7-6.fc38.i686                             3/70 
  Verifying        : htslib-1.15.1-1.fc38.i686                             4/70 
  Verifying        : htslib-devel-1.15.1-1.fc38.i686                       5/70 
  Verifying        : htslib-tools-1.15.1-1.fc38.i686                       6/70 
  Verifying        : libmpc-1.2.1-5.fc38.i686                              7/70 
  Verifying        : libxcrypt-devel-4.4.33-5.fc38.i686                    8/70 
  Verifying        : make-1:4.3-11.fc38.i686                               9/70 
  Verifying        : ncurses-6.3-5.20221126.fc38.i686                     10/70 
  Verifying        : ncurses-c++-libs-6.3-5.20221126.fc38.i686            11/70 
  Verifying        : ncurses-devel-6.3-5.20221126.fc38.i686               12/70 
  Verifying        : perl-Class-Struct-0.66-492.fc38.noarch               13/70 
  Verifying        : perl-DynaLoader-1.52-492.fc38.i686                   14/70 
  Verifying        : perl-Encode-4:3.19-492.fc38.i686                     15/70 
  Verifying        : perl-Errno-1.36-492.fc38.i686                        16/70 
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  Verifying        : perl-POSIX-2.03-492.fc38.i686                        25/70 
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  Verifying        : perl-Scalar-List-Utils-5:1.63-489.fc38.i686          27/70 
  Verifying        : perl-SelectSaver-1.02-492.fc38.noarch                28/70 
  Verifying        : perl-Socket-4:2.036-1.fc38.i686                      29/70 
  Verifying        : perl-Storable-1:3.26-489.fc38.i686                   30/70 
  Verifying        : perl-Symbol-1.09-492.fc38.noarch                     31/70 
  Verifying        : perl-if-0.61.000-492.fc38.noarch                     32/70 
  Verifying        : perl-interpreter-4:5.36.0-492.fc38.i686              33/70 
  Verifying        : perl-lib-0.65-492.fc38.i686                          34/70 
  Verifying        : perl-libs-4:5.36.0-492.fc38.i686                     35/70 
  Verifying        : perl-mro-1.26-492.fc38.i686                          36/70 
  Verifying        : perl-overload-1.35-492.fc38.noarch                   37/70 
  Verifying        : perl-overloading-0.02-492.fc38.noarch                38/70 
  Verifying        : perl-vars-1.05-492.fc38.noarch                       39/70 
  Verifying        : annobin-docs-10.99-1.0.1.fc38.noarch                 40/70 
  Verifying        : annobin-plugin-gcc-10.99-1.0.1.fc38.i686             41/70 
  Verifying        : cpp-13.0.0-0.4.fc38.i686                             42/70 
  Verifying        : gcc-13.0.0-0.4.fc38.i686                             43/70 
  Verifying        : gcc-plugin-annobin-13.0.0-0.4.fc38.i686              44/70 
  Verifying        : libasan-13.0.0-0.4.fc38.i686                         45/70 
  Verifying        : libatomic-13.0.0-0.4.fc38.i686                       46/70 
  Verifying        : libtool-ltdl-2.4.7-3.0.1.fc38.i686                   47/70 
  Verifying        : libubsan-13.0.0-0.4.fc38.i686                        48/70 
  Verifying        : glibc-devel-2.36.9000-19.fc38.i686                   49/70 
  Verifying        : glibc-headers-x86-2.36.9000-19.fc38.noarch           50/70 
  Verifying        : kernel-headers-6.1.0-1.fc38.i686                     51/70 
  Verifying        : perl-Carp-1.52-489.fc37.noarch                       52/70 
  Verifying        : perl-Exporter-5.77-489.fc37.noarch                   53/70 
  Verifying        : perl-File-Path-2.18-489.fc37.noarch                  54/70 
  Verifying        : perl-File-Temp-1:0.231.100-489.fc37.noarch           55/70 
  Verifying        : perl-Getopt-Long-1:2.54-1.fc38.noarch                56/70 
  Verifying        : perl-HTTP-Tiny-0.082-1.fc37.noarch                   57/70 
  Verifying        : perl-Pod-Escapes-1:1.07-489.fc37.noarch              58/70 
  Verifying        : perl-Pod-Perldoc-3.28.01-490.fc37.noarch             59/70 
  Verifying        : perl-Pod-Simple-1:3.43-490.fc37.noarch               60/70 
  Verifying        : perl-Pod-Usage-4:2.03-3.fc37.noarch                  61/70 
  Verifying        : perl-Term-ANSIColor-5.01-490.fc37.noarch             62/70 
  Verifying        : perl-Term-Cap-1.17-489.fc37.noarch                   63/70 
  Verifying        : perl-Text-ParseWords-3.31-489.fc37.noarch            64/70 
  Verifying        : perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch        65/70 
  Verifying        : perl-Time-Local-2:1.300-489.fc37.noarch              66/70 
  Verifying        : perl-constant-1.33-490.fc37.noarch                   67/70 
  Verifying        : perl-parent-1:0.239-1.fc38.noarch                    68/70 
  Verifying        : perl-podlators-1:5.00-1.fc38.noarch                  69/70 
  Verifying        : zlib-devel-1.2.13-1.fc38.i686                        70/70 

Installed:
  annobin-docs-10.99-1.0.1.fc38.noarch                                          
  annobin-plugin-gcc-10.99-1.0.1.fc38.i686                                      
  cpp-13.0.0-0.4.fc38.i686                                                      
  gc-8.2.2-1.fc38.i686                                                          
  gcc-13.0.0-0.4.fc38.i686                                                      
  gcc-plugin-annobin-13.0.0-0.4.fc38.i686                                       
  glibc-devel-2.36.9000-19.fc38.i686                                            
  glibc-headers-x86-2.36.9000-19.fc38.noarch                                    
  groff-base-1.22.4-10.fc38.i686                                                
  guile22-2.2.7-6.fc38.i686                                                     
  htslib-1.15.1-1.fc38.i686                                                     
  htslib-devel-1.15.1-1.fc38.i686                                               
  htslib-tools-1.15.1-1.fc38.i686                                               
  kernel-headers-6.1.0-1.fc38.i686                                              
  libasan-13.0.0-0.4.fc38.i686                                                  
  libatomic-13.0.0-0.4.fc38.i686                                                
  libmpc-1.2.1-5.fc38.i686                                                      
  libtool-ltdl-2.4.7-3.0.1.fc38.i686                                            
  libubsan-13.0.0-0.4.fc38.i686                                                 
  libxcrypt-devel-4.4.33-5.fc38.i686                                            
  make-1:4.3-11.fc38.i686                                                       
  ncurses-6.3-5.20221126.fc38.i686                                              
  ncurses-c++-libs-6.3-5.20221126.fc38.i686                                     
  ncurses-devel-6.3-5.20221126.fc38.i686                                        
  perl-Carp-1.52-489.fc37.noarch                                                
  perl-Class-Struct-0.66-492.fc38.noarch                                        
  perl-DynaLoader-1.52-492.fc38.i686                                            
  perl-Encode-4:3.19-492.fc38.i686                                              
  perl-Errno-1.36-492.fc38.i686                                                 
  perl-Exporter-5.77-489.fc37.noarch                                            
  perl-Fcntl-1.15-492.fc38.i686                                                 
  perl-File-Basename-2.85-492.fc38.noarch                                       
  perl-File-Path-2.18-489.fc37.noarch                                           
  perl-File-Temp-1:0.231.100-489.fc37.noarch                                    
  perl-File-stat-1.12-492.fc38.noarch                                           
  perl-FindBin-1.53-492.fc38.noarch                                             
  perl-Getopt-Long-1:2.54-1.fc38.noarch                                         
  perl-Getopt-Std-1.13-492.fc38.noarch                                          
  perl-HTTP-Tiny-0.082-1.fc37.noarch                                            
  perl-IO-1.50-492.fc38.i686                                                    
  perl-IPC-Open3-1.22-492.fc38.noarch                                           
  perl-MIME-Base64-3.16-489.fc38.i686                                           
  perl-POSIX-2.03-492.fc38.i686                                                 
  perl-PathTools-3.84-489.fc38.i686                                             
  perl-Pod-Escapes-1:1.07-489.fc37.noarch                                       
  perl-Pod-Perldoc-3.28.01-490.fc37.noarch                                      
  perl-Pod-Simple-1:3.43-490.fc37.noarch                                        
  perl-Pod-Usage-4:2.03-3.fc37.noarch                                           
  perl-Scalar-List-Utils-5:1.63-489.fc38.i686                                   
  perl-SelectSaver-1.02-492.fc38.noarch                                         
  perl-Socket-4:2.036-1.fc38.i686                                               
  perl-Storable-1:3.26-489.fc38.i686                                            
  perl-Symbol-1.09-492.fc38.noarch                                              
  perl-Term-ANSIColor-5.01-490.fc37.noarch                                      
  perl-Term-Cap-1.17-489.fc37.noarch                                            
  perl-Text-ParseWords-3.31-489.fc37.noarch                                     
  perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch                                 
  perl-Time-Local-2:1.300-489.fc37.noarch                                       
  perl-constant-1.33-490.fc37.noarch                                            
  perl-if-0.61.000-492.fc38.noarch                                              
  perl-interpreter-4:5.36.0-492.fc38.i686                                       
  perl-lib-0.65-492.fc38.i686                                                   
  perl-libs-4:5.36.0-492.fc38.i686                                              
  perl-mro-1.26-492.fc38.i686                                                   
  perl-overload-1.35-492.fc38.noarch                                            
  perl-overloading-0.02-492.fc38.noarch                                         
  perl-parent-1:0.239-1.fc38.noarch                                             
  perl-podlators-1:5.00-1.fc38.noarch                                           
  perl-vars-1.05-492.fc38.noarch                                                
  zlib-devel-1.2.13-1.fc38.i686                                                 

Complete!
Finish: build setup for samtools-1.15.1-1.fc38.src.rpm
Start: rpmbuild samtools-1.15.1-1.fc38.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1660521600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.h9QPDJ
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf samtools-1.15.1
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/samtools-1.15.1.tar.bz2
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd samtools-1.15.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ rm -f INSTALL
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.tmkwcr
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd samtools-1.15.1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
--- ./htslib-1.15.1/configure.backup	2022-04-07 15:42:52.000000000 +0000
+++ ./htslib-1.15.1/configure	2022-12-29 09:09:44.333686632 +0000
@@ -1697,7 +1697,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=i686-redhat-linux-gnu --host=i686-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' --prefix=/usr --with-htslib=system
checking for gawk... gawk
checking for i686-redhat-linux-gnu-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for htslib/sam.h... yes
checking for hts_version in -lhts... yes
checking for NcursesW wide-character library... yes
checking for working ncursesw/curses.h... yes
checking for library containing cbreak... none required
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for library containing regcomp... none required
configure: creating ./config.status
config.status: creating config.mk
config.status: creating config.h
+ /usr/bin/make -O -j2 V=1 VERBOSE=1
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_aux.o bam_aux.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam.o bam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_index.o bam_index.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_plcmd.o bam_plcmd.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o sam_view.o sam_view.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_fastq.o bam_fastq.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_cat.o bam_cat.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_plbuf.o bam_plbuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_md.o bam_md.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_reheader.o bam_reheader.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_rmdup.o bam_rmdup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_rmdupse.o bam_rmdupse.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_mate.o bam_mate.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_stat.o bam_stat.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_color.o bam_color.c
echo '#define SAMTOOLS_VERSION "1.15.1"' > version.h
echo '#define SAMTOOLS_CC "gcc"' >> version.h
echo '#define SAMTOOLS_CPPFLAGS ""' >> version.h
echo '#define SAMTOOLS_CFLAGS "-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection"' >> version.h
echo '#define SAMTOOLS_LDFLAGS "-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes"' >> version.h
echo '#define SAMTOOLS_HTSDIR ""' >> version.h
echo '#define SAMTOOLS_LIBS ""' >> version.h
echo '#define SAMTOOLS_CURSES_LIB "-lncursesw"' >> version.h
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam2bcf.o bam2bcf.c
bam2bcf.c: In function 'bcf_call_glfgen':
bam2bcf.c:81:33: warning: argument 2 range [2147483648, 4294967294] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
   81 |         bca->bases = (uint16_t*)realloc(bca->bases, 2 * bca->max_bases);
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/htslib/kstring.h:30,
                 from /usr/include/htslib/hts.h:37,
                 from bam2bcf.c:30:
/usr/include/stdlib.h:564:14: note: in a call to allocation function 'realloc' declared here
  564 | extern void *realloc (void *__ptr, size_t __size)
      |              ^~~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o sample.o sample.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o cut_target.o cut_target.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_sort.o bam_sort.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o phase.o phase.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o coverage.o coverage.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam2depth.o bam2depth.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o padding.o padding.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bedcov.o bedcov.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o faidx.o faidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o dict.o dict.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bamshuf.o bamshuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o stats_isize.o stats_isize.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_flags.o bam_flags.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_split.o bam_split.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_tview.o bam_tview.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o stats.o stats.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_tview_curses.o bam_tview_curses.c
bam_tview_curses.c: In function 'tv_win_help':
bam_tview_curses.c:333:14: warning: 'base' is used uninitialized [-Wuninitialized]
  333 |     tview_t* base=(tview_t*)base;
      |              ^~~~
bam_tview_curses.c:333:14: note: 'base' was declared here
  333 |     tview_t* base=(tview_t*)base;
      |              ^~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_tview_html.o bam_tview_html.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_quickcheck.o bam_quickcheck.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_lpileup.o bam_lpileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_addrprg.o bam_addrprg.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o tmp_file.o tmp_file.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_ampliconclip.o bam_ampliconclip.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_markdup.o bam_markdup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_import.o bam_import.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_samples.o bam_samples.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o amplicon_stats.o amplicon_stats.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bam_consensus.o bam_consensus.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o consensus_pileup.o consensus_pileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o sam_opts.o sam_opts.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o sam_utils.o sam_utils.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bedidx.o bedidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o misc/ace2sam.o misc/ace2sam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DMAQ_LONGREADS -I.  -I./lz4  -c -o misc/maq2sam-long.o misc/maq2sam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o misc/maq2sam-short.o misc/maq2sam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o misc/md5fa.o misc/md5fa.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o misc/md5sum-lite.o misc/md5sum-lite.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o lz4/lz4.o lz4/lz4.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o misc/wgsim.o misc/wgsim.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/test.o test/test.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/merge/test_bam_translate.o test/merge/test_bam_translate.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/merge/test_rtrans_build.o test/merge/test_rtrans_build.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/split/test_count_rg.o test/split/test_count_rg.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/split/test_expand_format_string.o test/split/test_expand_format_string.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/split/test_filter_header_rg.o test/split/test_filter_header_rg.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/split/test_parse_args.o test/split/test_parse_args.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/vcf-miniview.o test/vcf-miniview.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o bamtk.o bamtk.c
ar -rcs libst.a sam_opts.o sam_utils.o bedidx.o
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o misc/ace2sam misc/ace2sam.o -lhts -lz 
gcc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o misc/maq2sam-long misc/maq2sam-long.o -lz 
gcc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o misc/maq2sam-short misc/maq2sam-short.o -lz 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.  -I./lz4  -c -o test/merge/test_trans_tbl_init.o test/merge/test_trans_tbl_init.c
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o misc/md5fa misc/md5fa.o -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o misc/md5sum-lite misc/md5sum-lite.o -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test/merge/test_bam_translate test/merge/test_bam_translate.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o misc/wgsim misc/wgsim.o -lm -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test/merge/test_rtrans_build test/merge/test_rtrans_build.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test/split/test_count_rg test/split/test_count_rg.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test/split/test_expand_format_string test/split/test_expand_format_string.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test/split/test_filter_header_rg test/split/test_filter_header_rg.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test/merge/test_trans_tbl_init test/merge/test_trans_tbl_init.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test/vcf-miniview test/vcf-miniview.o -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test/split/test_parse_args test/split/test_parse_args.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o samtools bam.o bam_aux.o bam_index.o bam_plcmd.o sam_view.o bam_fastq.o bam_cat.o bam_md.o bam_plbuf.o bam_reheader.o bam_sort.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o bam2bcf.o sample.o cut_target.o phase.o bam2depth.o coverage.o padding.o bedcov.o bamshuf.o faidx.o dict.o stats.o stats_isize.o bam_flags.o bam_split.o bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o bam_quickcheck.o bam_addrprg.o bam_markdup.o tmp_file.o bam_ampliconclip.o amplicon_stats.o bam_import.o bam_samples.o bam_consensus.o consensus_pileup.o ./lz4/lz4.o libst.a -lhts -lncursesw -lm -lz  -lpthread
In function 'bcf_call_glfgen',
    inlined from 'tv_pl_func' at bam_tview.c:196:9:
bam2bcf.c:81:33: warning: argument 2 range [2147483648, 4294967294] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
   81 |         bca->bases = (uint16_t*)realloc(bca->bases, 2 * bca->max_bases);
      |                                 ^
/usr/include/stdlib.h: In function 'tv_pl_func':
/usr/include/stdlib.h:564:14: note: in a call to allocation function 'realloc' declared here
  564 | extern void *realloc (void *__ptr, size_t __size)
      |              ^
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.8AYDUM
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386
++ dirname /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd samtools-1.15.1
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386 'INSTALL=/usr/bin/install -p'
mkdir -p -m 755 /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/share/man/man1
/usr/bin/install -p samtools /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin
/usr/bin/install -p misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin
/usr/bin/install -p misc/blast2sam.pl misc/bowtie2sam.pl misc/export2sam.pl misc/fasta-sanitize.pl misc/interpolate_sam.pl misc/novo2sam.pl misc/plot-ampliconstats misc/plot-bamstats misc/psl2sam.pl misc/sam2vcf.pl misc/samtools.pl misc/seq_cache_populate.pl misc/soap2sam.pl misc/wgsim_eval.pl misc/zoom2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin
/usr/bin/install -p -m 644 doc/samtools*.1 misc/wgsim.1 /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/share/man/man1
++ grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/ace2sam /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/blast2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/bowtie2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/export2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/fasta-sanitize.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/interpolate_sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/maq2sam-long /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/maq2sam-short /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/md5fa /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/md5sum-lite /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/novo2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/plot-ampliconstats /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/plot-bamstats /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/psl2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/sam2vcf.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/samtools /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/samtools.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/seq_cache_populate.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/soap2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/wgsim /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/wgsim_eval.pl /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/zoom2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/blast2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/bowtie2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/export2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/fasta-sanitize.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/interpolate_sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/novo2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/plot-ampliconstats
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/plot-bamstats
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/psl2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/sam2vcf.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/samtools.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/seq_cache_populate.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/soap2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/wgsim_eval.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/zoom2sam.pl
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.15.1-1.fc38 --unique-debug-suffix -1.15.1-1.fc38.i386 --unique-debug-src-base samtools-1.15.1-1.fc38.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/samtools-1.15.1
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/maq2sam-long
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/ace2sam
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/maq2sam-short
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/md5fa
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/md5sum-lite
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/samtools
extracting debug info from /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/bin/wgsim
original debug info size: 1896kB, size after compression: 1708kB
/usr/bin/sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match.
2442 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.4BRt9x
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd samtools-1.15.1
+ ldd samtools
+ grep -E '/lib(64)?/libhts\.so\.'
	libhts.so.3 => /lib/libhts.so.3 (0xf7d41000)
+ make test
test/split/test_count_rg
test/split/test_expand_format_string
test/split/test_filter_header_rg
test/split/test_parse_args
REF_PATH=: test/test.pl --exec bgzip= ${TEST_OPTS:-}
bgzip -c -b 65272 -s 5 /tmp/VRyLb9rPAL/bgzip.dat.gz
.. ok

bgzip -c -b 979200 -s 6 /tmp/VRyLb9rPAL/bgzip.dat.gz
.. ok

bgzip -c -b 652804 -s 6 /tmp/VRyLb9rPAL/bgzip.dat.gz
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/VRyLb9rPAL/faidx.fa 3:11-13 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/VRyLb9rPAL/faidx.fa.gz 3:11-13 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/VRyLb9rPAL/faidx.fa 2:998-1003 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/VRyLb9rPAL/faidx.fa.gz 2:998-1003 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/VRyLb9rPAL/faidx.fa 1:100-104 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/VRyLb9rPAL/faidx.fa.gz 1:100-104 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/VRyLb9rPAL/faidx.fa 1:99998-100007 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/VRyLb9rPAL/faidx.fa.gz 1:99998-100007 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/VRyLb9rPAL/fqidx.fq 3:11-13
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/VRyLb9rPAL/fqidx.fq.gz 3:11-13
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/VRyLb9rPAL/fqidx.fq 2:998-1003
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/VRyLb9rPAL/fqidx.fq.gz 2:998-1003
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/VRyLb9rPAL/fqidx.fq 1:100-104
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/VRyLb9rPAL/fqidx.fq.gz 1:100-104
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/VRyLb9rPAL/fqidx.fq 1:99998-100007
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/VRyLb9rPAL/fqidx.fq.gz 1:99998-100007
.. ok

.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.15.1/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz /builddir/build/BUILD/samtools-1.15.1/test/dat/dict.fa
.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.15.1/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz /tmp/VRyLb9rPAL/dict.fa.gz
.. ok

test_dict:
	cat /builddir/build/BUILD/samtools-1.15.1/test/dat/dict.fa | /builddir/build/BUILD/samtools-1.15.1/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz
.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.15.1/samtools dict -AH < /builddir/build/BUILD/samtools-1.15.1/test/dat/dict.alias.fa
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view /tmp/VRyLb9rPAL/large_chrom.bam ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view /tmp/VRyLb9rPAL/large_chrom.bam ref2:1-541556283
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam && cat /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -X /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /tmp/VRyLb9rPAL/test_input_1_b.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -O sam - -X -cp -R ref2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai /tmp/VRyLb9rPAL/test_input_1_b.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.bam /tmp/VRyLb9rPAL/auto_indexed.csi && cat /tmp/VRyLb9rPAL/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.cram /tmp/VRyLb9rPAL/auto_indexed.crai && cat /tmp/VRyLb9rPAL/auto_indexed.crai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.sam /tmp/VRyLb9rPAL/auto_indexed.csi && cat /tmp/VRyLb9rPAL/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -@ 2 /tmp/VRyLb9rPAL/large_chrom.bam ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -@ 2 /tmp/VRyLb9rPAL/large_chrom.bam ref2:1-541556283
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam && cat /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -@ 2 -X /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /tmp/VRyLb9rPAL/test_input_1_b.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -O sam - -X -cp -R ref2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai /tmp/VRyLb9rPAL/test_input_1_b.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.bam /tmp/VRyLb9rPAL/auto_indexed.csi && cat /tmp/VRyLb9rPAL/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.cram /tmp/VRyLb9rPAL/auto_indexed.crai && cat /tmp/VRyLb9rPAL/auto_indexed.crai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.sam /tmp/VRyLb9rPAL/auto_indexed.csi && cat /tmp/VRyLb9rPAL/auto_indexed.csi
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/VRyLb9rPAL/mpileup.bam.list -f /tmp/VRyLb9rPAL/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/VRyLb9rPAL/mpileup.cram.list -f /tmp/VRyLb9rPAL/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/VRyLb9rPAL/mpileup.bam.urllist -f /tmp/VRyLb9rPAL/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/VRyLb9rPAL/mpileup.cram.urllist -f /tmp/VRyLb9rPAL/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -B --ff 0x14 -f /tmp/VRyLb9rPAL/mpileup.ref.fa.gz -r17:1050-1060 /tmp/VRyLb9rPAL/mpileup.1.bam | grep -v mpileup
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -B --ff 0x14 -f /tmp/VRyLb9rPAL/mpileup.ref.fa.gz -r17:1050-1060 /tmp/VRyLb9rPAL/mpileup.1.cram | grep -v mpileup
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup /builddir/build/BUILD/samtools-1.15.1/test/mpileup/overlap.bam | grep 128814202
test/test.pl: no IO::Pty module or can't open pty; skipping usage tests
.. ok

test_usage:
	samtools
test_view:
	Generating test data file .................. done
	1: SAM -> BAM -> SAM                                        .. ok

	2: SAM -> uncompressed BAM                                  .. ok

	3: uncompressed BAM -> SAM and compare                      .. ok

	4: SAM -> fast compressed BAM                               .. ok

	5: fast compressed BAM -> SAM and compare                   .. ok

	6: SAM -> CRAM -> SAM (UR header tags)                      .. ok

	7: SAM -> CRAM -> SAM (M5 header tags)                      .. ok

	8: BAM -> CRAM with UR -> SAM                               .. ok

	9: SAM -> BAM (M5 header tags)                              .. ok

	10: SAM -> BAM -> CRAM -> SAM (M5 header tags)              .. ok

	11: CRAM -> BAM with UR                                     .. ok

	12: CRAM -> BAM with M5                                     .. ok

	13: SAM -> SAM via stdout                                   .. ok

	14: SAM -> BAM via stdout                                   .. ok

	15: SAM -> CRAM via stdout                                  .. ok

	16: SAM from stdin -> SAM                                   .. ok

	17: BAM from stdin -> SAM                                   .. ok

	18: CRAM from stdin -> SAM                                  .. ok

	19: samtools view -H (SAM input)                            .. ok

	20: samtools view -H (BAM input)                            .. ok

	21: samtools view -H (CRAM input)                           .. ok

	22: No headers (SAM input)                                  .. ok

	23: No headers (BAM input)                                  .. ok

	24: No headers (CRAM input)                                 .. ok

	25: Filter -f 128 (SAM input)                               .. ok

	26: Count -f 128 (SAM input)                                .. ok

	27: Filter -f 128 (BAM input)                               .. ok

	28: Count -f 128 (BAM input)                                .. ok

	29: Filter -f 128 (CRAM input)                              .. ok

	30: Count -f 128 (CRAM input)                               .. ok

	31: Filter -F 128 (SAM input)                               .. ok

	32: Count -F 128 (SAM input)                                .. ok

	33: Filter -F 128 (BAM input)                               .. ok

	34: Count -F 128 (BAM input)                                .. ok

	35: Filter -F 128 (CRAM input)                              .. ok

	36: Count -F 128 (CRAM input)                               .. ok

	37: Filter -F 128 -f 2 (SAM input)                          .. ok

	38: Count -F 128 -f 2 (SAM input)                           .. ok

	39: Filter -F 128 -f 2 (BAM input)                          .. ok

	40: Count -F 128 -f 2 (BAM input)                           .. ok

	41: Filter -F 128 -f 2 (CRAM input)                         .. ok

	42: Count -F 128 -f 2 (CRAM input)                          .. ok

	43: Filter -r grp2 (SAM input)                              .. ok

	44: Count -r grp2 (SAM input)                               .. ok

	45: Filter -r grp2 (BAM input)                              .. ok

	46: Count -r grp2 (BAM input)                               .. ok

	47: Filter -r grp2 (CRAM input)                             .. ok

	48: Count -r grp2 (CRAM input)                              .. ok

	49: Filter -R /tmp/VRyLb9rPAL/view.001.fogn (SAM input)     .. ok

	50: Count -R /tmp/VRyLb9rPAL/view.001.fogn (SAM input)      .. ok

	51: Filter -R /tmp/VRyLb9rPAL/view.001.fogn (BAM input)     .. ok

	52: Count -R /tmp/VRyLb9rPAL/view.001.fogn (BAM input)      .. ok

	53: Filter -R /tmp/VRyLb9rPAL/view.001.fogn (CRAM input)    .. ok

	54: Count -R /tmp/VRyLb9rPAL/view.001.fogn (CRAM input)     .. ok

	55: Filter -R /tmp/VRyLb9rPAL/view.001.fogn -r grp2 (SAM input).. ok

	56: Count -R /tmp/VRyLb9rPAL/view.001.fogn -r grp2 (SAM input).. ok

	57: Filter -R /tmp/VRyLb9rPAL/view.001.fogn -r grp2 (BAM input).. ok

	58: Count -R /tmp/VRyLb9rPAL/view.001.fogn -r grp2 (BAM input).. ok

	59: Filter -R /tmp/VRyLb9rPAL/view.001.fogn -r grp2 (CRAM input).. ok

	60: Count -R /tmp/VRyLb9rPAL/view.001.fogn -r grp2 (CRAM input).. ok

	61: Filter -r grp2 -R /tmp/VRyLb9rPAL/view.001.fogn (SAM input).. ok

	62: Count -r grp2 -R /tmp/VRyLb9rPAL/view.001.fogn (SAM input).. ok

	63: Filter -r grp2 -R /tmp/VRyLb9rPAL/view.001.fogn (BAM input).. ok

	64: Count -r grp2 -R /tmp/VRyLb9rPAL/view.001.fogn (BAM input).. ok

	65: Filter -r grp2 -R /tmp/VRyLb9rPAL/view.001.fogn (CRAM input).. ok

	66: Count -r grp2 -R /tmp/VRyLb9rPAL/view.001.fogn (CRAM input).. ok

	67: Filter -N /tmp/VRyLb9rPAL/view.001.forn (SAM input)     .. ok

	68: Count -N /tmp/VRyLb9rPAL/view.001.forn (SAM input)      .. ok

	69: Filter -N /tmp/VRyLb9rPAL/view.001.forn (BAM input)     .. ok

	70: Count -N /tmp/VRyLb9rPAL/view.001.forn (BAM input)      .. ok

	71: Filter -N /tmp/VRyLb9rPAL/view.001.forn (CRAM input)    .. ok

	72: Count -N /tmp/VRyLb9rPAL/view.001.forn (CRAM input)     .. ok

	73: Filter -d BC (SAM input)                                .. ok

	74: Count -d BC (SAM input)                                 .. ok

	75: Filter -d BC (BAM input)                                .. ok

	76: Count -d BC (BAM input)                                 .. ok

	77: Filter -d BC (CRAM input)                               .. ok

	78: Count -d BC (CRAM input)                                .. ok

	79: Filter -d BC:TGCA (SAM input)                           .. ok

	80: Count -d BC:TGCA (SAM input)                            .. ok

	81: Filter -d BC:TGCA (BAM input)                           .. ok

	82: Count -d BC:TGCA (BAM input)                            .. ok

	83: Filter -d BC:TGCA (CRAM input)                          .. ok

	84: Count -d BC:TGCA (CRAM input)                           .. ok

	85: Filter -D BC:/tmp/VRyLb9rPAL/view.001.fobc (SAM input)  .. ok

	86: Count -D BC:/tmp/VRyLb9rPAL/view.001.fobc (SAM input)   .. ok

	87: Filter -D BC:/tmp/VRyLb9rPAL/view.001.fobc (BAM input)  .. ok

	88: Count -D BC:/tmp/VRyLb9rPAL/view.001.fobc (BAM input)   .. ok

	89: Filter -D BC:/tmp/VRyLb9rPAL/view.001.fobc (CRAM input) .. ok

	90: Count -D BC:/tmp/VRyLb9rPAL/view.001.fobc (CRAM input)  .. ok

	91: Filter -D BC:/tmp/VRyLb9rPAL/view.001.fobc -d BC:TGCA (SAM input).. ok

	92: Count -D BC:/tmp/VRyLb9rPAL/view.001.fobc -d BC:TGCA (SAM input).. ok

	93: Filter -D BC:/tmp/VRyLb9rPAL/view.001.fobc -d BC:TGCA (BAM input).. ok

	94: Count -D BC:/tmp/VRyLb9rPAL/view.001.fobc -d BC:TGCA (BAM input).. ok

	95: Filter -D BC:/tmp/VRyLb9rPAL/view.001.fobc -d BC:TGCA (CRAM input).. ok

	96: Count -D BC:/tmp/VRyLb9rPAL/view.001.fobc -d BC:TGCA (CRAM input).. ok

	97: Filter -d BC:TGCA -D BC:/tmp/VRyLb9rPAL/view.001.fobc (SAM input).. ok

	98: Count -d BC:TGCA -D BC:/tmp/VRyLb9rPAL/view.001.fobc (SAM input).. ok

	99: Filter -d BC:TGCA -D BC:/tmp/VRyLb9rPAL/view.001.fobc (BAM input).. ok

	100: Count -d BC:TGCA -D BC:/tmp/VRyLb9rPAL/view.001.fobc (BAM input).. ok

	101: Filter -d BC:TGCA -D BC:/tmp/VRyLb9rPAL/view.001.fobc (CRAM input).. ok

	102: Count -d BC:TGCA -D BC:/tmp/VRyLb9rPAL/view.001.fobc (CRAM input).. ok

	103: Filter -D RG:/tmp/VRyLb9rPAL/view.001.fogn (SAM input) .. ok

	104: Count -D RG:/tmp/VRyLb9rPAL/view.001.fogn (SAM input)  .. ok

	105: Filter -D RG:/tmp/VRyLb9rPAL/view.001.fogn (BAM input) .. ok

	106: Count -D RG:/tmp/VRyLb9rPAL/view.001.fogn (BAM input)  .. ok

	107: Filter -D RG:/tmp/VRyLb9rPAL/view.001.fogn (CRAM input).. ok

	108: Count -D RG:/tmp/VRyLb9rPAL/view.001.fogn (CRAM input) .. ok

	109: Filter -d NE:TGCA (SAM input)                          .. ok

	110: Count -d NE:TGCA (SAM input)                           .. ok

	111: Filter -d NE:TGCA (BAM input)                          .. ok

	112: Count -d NE:TGCA (BAM input)                           .. ok

	113: Filter -d NE:TGCA (CRAM input)                         .. ok

	114: Count -d NE:TGCA (CRAM input)                          .. ok

	115: Filter -d TGCA (SAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/VRyLb9rPAL/view.test115.sam -h -d TGCA /tmp/VRyLb9rPAL/view.001.sam --no-PG


.. expected failure

	116: Count -d TGCA (SAM input)                              samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d TGCA /tmp/VRyLb9rPAL/view.001.sam --no-PG


.. expected failure

	117: Filter -d TGCA (BAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/VRyLb9rPAL/view.test117.sam -h -d TGCA /tmp/VRyLb9rPAL/view.test001.bam --no-PG


.. expected failure

	118: Count -d TGCA (BAM input)                              samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d TGCA /tmp/VRyLb9rPAL/view.test001.bam --no-PG


.. expected failure

	119: Filter -d TGCA (CRAM input)                            samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/VRyLb9rPAL/view.test119.sam -h -d TGCA /tmp/VRyLb9rPAL/view.test006.cram --no-PG


.. expected failure

	120: Count -d TGCA (CRAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d TGCA /tmp/VRyLb9rPAL/view.test006.cram --no-PG


.. expected failure

	121: Filter -D BClong:/tmp/VRyLb9rPAL/view.001.fobc (SAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/VRyLb9rPAL/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/VRyLb9rPAL/view.test121.sam -h -D BClong:/tmp/VRyLb9rPAL/view.001.fobc /tmp/VRyLb9rPAL/view.001.sam --no-PG


.. expected failure

	122: Count -D BClong:/tmp/VRyLb9rPAL/view.001.fobc (SAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/VRyLb9rPAL/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -D BClong:/tmp/VRyLb9rPAL/view.001.fobc /tmp/VRyLb9rPAL/view.001.sam --no-PG


.. expected failure

	123: Filter -D BClong:/tmp/VRyLb9rPAL/view.001.fobc (BAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/VRyLb9rPAL/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/VRyLb9rPAL/view.test123.sam -h -D BClong:/tmp/VRyLb9rPAL/view.001.fobc /tmp/VRyLb9rPAL/view.test001.bam --no-PG


.. expected failure

	124: Count -D BClong:/tmp/VRyLb9rPAL/view.001.fobc (BAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/VRyLb9rPAL/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -D BClong:/tmp/VRyLb9rPAL/view.001.fobc /tmp/VRyLb9rPAL/view.test001.bam --no-PG


.. expected failure

	125: Filter -D BClong:/tmp/VRyLb9rPAL/view.001.fobc (CRAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/VRyLb9rPAL/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/VRyLb9rPAL/view.test125.sam -h -D BClong:/tmp/VRyLb9rPAL/view.001.fobc /tmp/VRyLb9rPAL/view.test006.cram --no-PG


.. expected failure

	126: Count -D BClong:/tmp/VRyLb9rPAL/view.001.fobc (CRAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/VRyLb9rPAL/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -D BClong:/tmp/VRyLb9rPAL/view.001.fobc /tmp/VRyLb9rPAL/view.test006.cram --no-PG


.. expected failure

	127: Filter -d BC:ACGT -d RG:grp2 (SAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/VRyLb9rPAL/view.test127.sam -h -d BC:ACGT -d RG:grp2 /tmp/VRyLb9rPAL/view.001.sam --no-PG


.. expected failure

	128: Count -d BC:ACGT -d RG:grp2 (SAM input)                samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/VRyLb9rPAL/view.001.sam --no-PG


.. expected failure

	129: Filter -d BC:ACGT -d RG:grp2 (BAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/VRyLb9rPAL/view.test129.sam -h -d BC:ACGT -d RG:grp2 /tmp/VRyLb9rPAL/view.test001.bam --no-PG


.. expected failure

	130: Count -d BC:ACGT -d RG:grp2 (BAM input)                samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/VRyLb9rPAL/view.test001.bam --no-PG


.. expected failure

	131: Filter -d BC:ACGT -d RG:grp2 (CRAM input)              samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/VRyLb9rPAL/view.test131.sam -h -d BC:ACGT -d RG:grp2 /tmp/VRyLb9rPAL/view.test006.cram --no-PG


.. expected failure

	132: Count -d BC:ACGT -d RG:grp2 (CRAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/VRyLb9rPAL/view.test006.cram --no-PG


.. expected failure

	133: Filter -d NM:13 (SAM input)                            .. ok

	134: Count -d NM:13 (SAM input)                             .. ok

	135: Filter -d NM:13 (BAM input)                            .. ok

	136: Count -d NM:13 (BAM input)                             .. ok

	137: Filter -d NM:13 (CRAM input)                           .. ok

	138: Count -d NM:13 (CRAM input)                            .. ok

	139: Filter -d ab:z (SAM input)                             .. ok

	140: Count -d ab:z (SAM input)                              .. ok

	141: Filter -d ab:z (BAM input)                             .. ok

	142: Count -d ab:z (BAM input)                              .. ok

	143: Filter -d ab:z (CRAM input)                            .. ok

	144: Count -d ab:z (CRAM input)                             .. ok

	145: Filter -l Library 2 (SAM input)                        .. ok

	146: Count -l Library 2 (SAM input)                         .. ok

	147: Filter -l Library 2 (BAM input)                        .. ok

	148: Count -l Library 2 (BAM input)                         .. ok

	149: Filter -l Library 2 (CRAM input)                       .. ok

	150: Count -l Library 2 (CRAM input)                        .. ok

	151: Filter -l Library 3 (SAM input)                        .. ok

	152: Count -l Library 3 (SAM input)                         .. ok

	153: Filter -l Library 3 (BAM input)                        .. ok

	154: Count -l Library 3 (BAM input)                         .. ok

	155: Filter -l Library 3 (CRAM input)                       .. ok

	156: Count -l Library 3 (CRAM input)                        .. ok

	157: Filter -q 50 (SAM input)                               .. ok

	158: Count -q 50 (SAM input)                                .. ok

	159: Filter -q 50 (BAM input)                               .. ok

	160: Count -q 50 (BAM input)                                .. ok

	161: Filter -q 50 (CRAM input)                              .. ok

	162: Count -q 50 (CRAM input)                               .. ok

	163: Filter -q 99 (SAM input)                               .. ok

	164: Count -q 99 (SAM input)                                .. ok

	165: Filter -q 99 (BAM input)                               .. ok

	166: Count -q 99 (BAM input)                                .. ok

	167: Filter -q 99 (CRAM input)                              .. ok

	168: Count -q 99 (CRAM input)                               .. ok

	169: Filter -q 100 (SAM input)                              .. ok

	170: Count -q 100 (SAM input)                               .. ok

	171: Filter -q 100 (BAM input)                              .. ok

	172: Count -q 100 (BAM input)                               .. ok

	173: Filter -q 100 (CRAM input)                             .. ok

	174: Count -q 100 (CRAM input)                              .. ok

	175: Filter -x fa (SAM input)                               .. ok

	176: Count -x fa (SAM input)                                .. ok

	177: Filter -x fa (BAM input)                               .. ok

	178: Count -x fa (BAM input)                                .. ok

	179: Filter -x fa (CRAM input)                              .. ok

	180: Count -x fa (CRAM input)                               .. ok

	181: Filter -x fa -x ha (SAM input)                         .. ok

	182: Count -x fa -x ha (SAM input)                          .. ok

	183: Filter -x fa -x ha (BAM input)                         .. ok

	184: Count -x fa -x ha (BAM input)                          .. ok

	185: Filter -x fa -x ha (CRAM input)                        .. ok

	186: Count -x fa -x ha (CRAM input)                         .. ok

	187: Filter -x fa,ha (SAM input)                            .. ok

	188: Count -x fa,ha (SAM input)                             .. ok

	189: Filter -x fa,ha (BAM input)                            .. ok

	190: Count -x fa,ha (BAM input)                             .. ok

	191: Filter -x fa,ha (CRAM input)                           .. ok

	192: Count -x fa,ha (CRAM input)                            .. ok

	193: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	194: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	195: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	196: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	197: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	198: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	199: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	200: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	201: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	202: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	203: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	204: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	205: Filter -x fa -r grp2 (SAM input)                       .. ok

	206: Count -x fa -r grp2 (SAM input)                        .. ok

	207: Filter -x fa -r grp2 (BAM input)                       .. ok

	208: Count -x fa -r grp2 (BAM input)                        .. ok

	209: Filter -x fa -r grp2 (CRAM input)                      .. ok

	210: Count -x fa -r grp2 (CRAM input)                       .. ok

	211: Filter -x RG -r grp2 (SAM input)                       .. ok

	212: Count -x RG -r grp2 (SAM input)                        .. ok

	213: Filter -x RG -r grp2 (BAM input)                       .. ok

	214: Count -x RG -r grp2 (BAM input)                        .. ok

	215: Filter -x RG -r grp2 (CRAM input)                      .. ok

	216: Count -x RG -r grp2 (CRAM input)                       .. ok

	217: Filter -m 10 (SAM input)                               .. ok

	218: Count -m 10 (SAM input)                                .. ok

	219: Filter -m 10 (BAM input)                               .. ok

	220: Count -m 10 (BAM input)                                .. ok

	221: Filter -m 10 (CRAM input)                              .. ok

	222: Count -m 10 (CRAM input)                               .. ok

	223: Filter -m 11 (SAM input)                               .. ok

	224: Count -m 11 (SAM input)                                .. ok

	225: Filter -m 11 (BAM input)                               .. ok

	226: Count -m 11 (BAM input)                                .. ok

	227: Filter -m 11 (CRAM input)                              .. ok

	228: Count -m 11 (CRAM input)                               .. ok

	229: Filter -m 15 (SAM input)                               .. ok

	230: Count -m 15 (SAM input)                                .. ok

	231: Filter -m 15 (BAM input)                               .. ok

	232: Count -m 15 (BAM input)                                .. ok

	233: Filter -m 15 (CRAM input)                              .. ok

	234: Count -m 15 (CRAM input)                               .. ok

	235: Filter -m 16 (SAM input)                               .. ok

	236: Count -m 16 (SAM input)                                .. ok

	237: Filter -m 16 (BAM input)                               .. ok

	238: Count -m 16 (BAM input)                                .. ok

	239: Filter -m 16 (CRAM input)                              .. ok

	240: Count -m 16 (CRAM input)                               .. ok

	241: Filter -e !(flag & 128) && (flag & 2) (SAM input)      .. ok

	242: Count -e !(flag & 128) && (flag & 2) (SAM input)       .. ok

	243: Filter -e !(flag & 128) && (flag & 2) (BAM input)      .. ok

	244: Count -e !(flag & 128) && (flag & 2) (BAM input)       .. ok

	245: Filter -e !(flag & 128) && (flag & 2) (CRAM input)     .. ok

	246: Count -e !(flag & 128) && (flag & 2) (CRAM input)      .. ok

	247: Filter -e [BC] (SAM input)                             .. ok

	248: Count -e [BC] (SAM input)                              .. ok

	249: Filter -e [BC] (BAM input)                             .. ok

	250: Count -e [BC] (BAM input)                              .. ok

	251: Filter -e [BC] (CRAM input)                            .. ok

	252: Count -e [BC] (CRAM input)                             .. ok

	253: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (SAM input).. ok

	254: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (SAM input).. ok

	255: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (BAM input).. ok

	256: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (BAM input).. ok

	257: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (CRAM input).. ok

	258: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (CRAM input).. ok

	259: Filter -e mapq >= 50 (SAM input)                       .. ok

	260: Count -e mapq >= 50 (SAM input)                        .. ok

	261: Filter -e mapq >= 50 (BAM input)                       .. ok

	262: Count -e mapq >= 50 (BAM input)                        .. ok

	263: Filter -e mapq >= 50 (CRAM input)                      .. ok

	264: Count -e mapq >= 50 (CRAM input)                       .. ok

	265: Filter -e mapq >= 99 (SAM input)                       .. ok

	266: Count -e mapq >= 99 (SAM input)                        .. ok

	267: Filter -e mapq >= 99 (BAM input)                       .. ok

	268: Count -e mapq >= 99 (BAM input)                        .. ok

	269: Filter -e mapq >= 99 (CRAM input)                      .. ok

	270: Count -e mapq >= 99 (CRAM input)                       .. ok

	271: Filter -e mapq >= 100 (SAM input)                      .. ok

	272: Count -e mapq >= 100 (SAM input)                       .. ok

	273: Filter -e mapq >= 100 (BAM input)                      .. ok

	274: Count -e mapq >= 100 (BAM input)                       .. ok

	275: Filter -e mapq >= 100 (CRAM input)                     .. ok

	276: Count -e mapq >= 100 (CRAM input)                      .. ok

	277: 1bp reads file SAM -> BAM -> SAM                       .. ok

	278: 1bp reads file SAM -> CRAM -> SAM                      .. ok

	278: Region  Z (BAM input)                                  .. ok

	279: Count  Z (BAM input)                                   .. ok

	280: Region  Z (CRAM input)                                 .. ok

	281: Count  Z (CRAM input)                                  .. ok

	282: Region  Z:30 (BAM input)                               .. ok

	283: Count  Z:30 (BAM input)                                .. ok

	284: Region  Z:30 (CRAM input)                              .. ok

	285: Count  Z:30 (CRAM input)                               .. ok

	286: Region  Z:20-40 (BAM input)                            .. ok

	287: Count  Z:20-40 (BAM input)                             .. ok

	288: Region  Z:20-40 (CRAM input)                           .. ok

	289: Count  Z:20-40 (CRAM input)                            .. ok

	290: Region  ref1 (BAM input)                               .. ok

	291: Count  ref1 (BAM input)                                .. ok

	292: Region  ref1 (CRAM input)                              .. ok

	293: Count  ref1 (CRAM input)                               .. ok

	294: Region  ref1:15 (BAM input)                            .. ok

	295: Count  ref1:15 (BAM input)                             .. ok

	296: Region  ref1:15 (CRAM input)                           .. ok

	297: Count  ref1:15 (CRAM input)                            .. ok

	298: Region  ref1:15-45 (BAM input)                         .. ok

	299: Count  ref1:15-45 (BAM input)                          .. ok

	300: Region  ref1:15-45 (CRAM input)                        .. ok

	301: Count  ref1:15-45 (CRAM input)                         .. ok

	302: Region  ref1:15-45 ref2 (BAM input)                    .. ok

	303: Count  ref1:15-45 ref2 (BAM input)                     .. ok

	304: Region  ref1:15-45 ref2 (CRAM input)                   .. ok

	305: Count  ref1:15-45 ref2 (CRAM input)                    .. ok

	306: Region  ref1:15-45 ref2:16 (BAM input)                 .. ok

	307: Count  ref1:15-45 ref2:16 (BAM input)                  .. ok

	308: Region  ref1:15-45 ref2:16 (CRAM input)                .. ok

	309: Count  ref1:15-45 ref2:16 (CRAM input)                 .. ok

	310: Region  ref1:15-45 ref2:16-31 (BAM input)              .. ok

	311: Count  ref1:15-45 ref2:16-31 (BAM input)               .. ok

	312: Region  ref1:15-45 ref2:16-31 (CRAM input)             .. ok

	313: Count  ref1:15-45 ref2:16-31 (CRAM input)              .. ok

	314: Region  ref1:15-15 ref1:45-45 (BAM input)              .. ok

	315: Count  ref1:15-15 ref1:45-45 (BAM input)               .. ok

	316: Region  ref1:15-15 ref1:45-45 (CRAM input)             .. ok

	317: Count  ref1:15-15 ref1:45-45 (CRAM input)              .. ok

	318: Region -f 128 ref1 (BAM input)                         .. ok

	319: Count -f 128 ref1 (BAM input)                          .. ok

	320: Region -f 128 ref1 (CRAM input)                        .. ok

	321: Count -f 128 ref1 (CRAM input)                         .. ok

	322: Region -q 50 ref1:15-45 (BAM input)                    .. ok

	323: Count -q 50 ref1:15-45 (BAM input)                     .. ok

	324: Region -q 50 ref1:15-45 (CRAM input)                   .. ok

	325: Count -q 50 ref1:15-45 (CRAM input)                    .. ok

	326: Region -r grp2 ref1:15-45 (BAM input)                  .. ok

	327: Count -r grp2 ref1:15-45 (BAM input)                   .. ok

	328: Region -r grp2 ref1:15-45 (CRAM input)                 .. ok

	329: Count -r grp2 ref1:15-45 (CRAM input)                  .. ok

	330: Region  * (BAM input)                                  .. ok

	331: Count  * (BAM input)                                   .. ok

	332: Region  * (CRAM input)                                 .. ok

	333: Count  * (CRAM input)                                  .. ok

	334: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (BAM input).. ok

	335: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (BAM input).. ok

	336: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (CRAM input).. ok

	337: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (CRAM input).. ok

	338: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (BAM input).. ok

	339: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (BAM input).. ok

	340: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (CRAM input).. ok

	341: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (CRAM input).. ok

	342: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (BAM input).. ok

	343: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (BAM input).. ok

	344: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (CRAM input).. ok

	345: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (CRAM input).. ok

	346: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (BAM input).. ok

	347: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (BAM input).. ok

	348: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (CRAM input).. ok

	349: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (CRAM input).. ok

	350: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (BAM input).. ok

	351: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (BAM input).. ok

	352: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (CRAM input).. ok

	353: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (CRAM input).. ok

	354: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (BAM input).. ok

	355: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (BAM input).. ok

	356: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (CRAM input).. ok

	357: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (CRAM input).. ok

	358: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (BAM input).. ok

	359: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (BAM input).. ok

	360: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (CRAM input).. ok

	361: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (CRAM input).. ok

	362: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (BAM input).. ok

	363: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (BAM input).. ok

	364: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (CRAM input).. ok

	365: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (CRAM input).. ok

	366: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (BAM input).. ok

	367: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (BAM input).. ok

	368: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (CRAM input).. ok

	369: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (CRAM input).. ok

	370: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (BAM input).. ok

	371: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (BAM input).. ok

	372: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (CRAM input).. ok

	373: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (CRAM input).. ok

	374: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (BAM input).. ok

	375: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (BAM input).. ok

	376: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (CRAM input).. ok

	377: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (CRAM input).. ok

	378: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (BAM input).. ok

	379: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (BAM input).. ok

	380: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (CRAM input).. ok

	381: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (CRAM input).. ok

	382: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (BAM input).. ok

	383: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (BAM input).. ok

	384: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (CRAM input).. ok

	385: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (CRAM input).. ok

	386: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (BAM input).. ok

	387: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (BAM input).. ok

	388: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (CRAM input).. ok

	389: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (CRAM input).. ok

	390: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (BAM input).. ok

	391: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (BAM input).. ok

	392: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (CRAM input).. ok

	393: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (CRAM input).. ok

	394: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (BAM input).. ok

	395: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (BAM input).. ok

	396: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (CRAM input).. ok

	397: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (CRAM input).. ok

	398: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (BAM input).. ok

	399: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (BAM input).. ok

	400: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (CRAM input).. ok

	401: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (CRAM input).. ok

	402: Make BAM with no M5/UR tags                            .. ok

	403: Add @SQ with -t (SAM -> SAM)                           .. ok

	404: Add @SQ with -T (SAM -> SAM)                           .. ok

	405: Add @SQ with -t (BAM -> SAM)                           .. ok

	406: Add @SQ with -T (BAM -> SAM)                           .. ok

	407: Add @SQ with -t (SAM -> BAM)                           .. ok

	408: Add @SQ with -T (SAM -> BAM)                           .. ok

	409: Add @SQ with -t (BAM -> BAM)                           .. ok

	410: Add @SQ with -T (BAM -> BAM)                           .. ok

	411: Add @SQ with -t (SAM -> CRAM)                          .. ok

	412: Add @SQ with -T (SAM -> CRAM)                          .. ok

	413: Add @SQ with -t (BAM -> CRAM)                          .. ok

	414: Add @SQ with -T (BAM -> CRAM)                          .. ok

	415: Make CRAM with no UR field                             .. ok

	416: Decoding CRAM with no UR field via -T                  .. ok

	417: CIGAR B-operator removal                               .. ok

	418: Big SAM -> BAM                                         .. ok

	419: Big SAM -> BAM (2 threads)                             .. ok

	420: Big SAM -> BAM (4 threads)                             .. ok

	421: Big SAM -> CRAM                                        .. ok

	422: Big SAM -> CRAM (2 threads)                            .. ok

	423: Big SAM -> CRAM (4 threads)                            .. ok

	424: Subsample 0.2 (SAM input) ............ ok

	425: Subsample 0.5 (SAM input) ............ ok

	426: Subsample 0.8 (SAM input) ............ ok

	427: Subsample 0.2 (BAM input) ............ ok

	428: Subsample 0.5 (BAM input) ............ ok

	429: Subsample 0.8 (BAM input) ............ ok

	430: Subsample 0.2 (CRAM input) ............ ok

	431: Subsample 0.5 (CRAM input) ............ ok

	432: Subsample 0.8 (CRAM input) ............ ok

	433: SAM add PG                                             .. ok

	434: Unset dup flag, remove dt and do tags                  .. ok

	435: Unmap dup flagged reads.                               .. ok

	436: Unmap dup flagged reads.                               .. ok

	437: fetch pairs                                            .. ok

	438: fetch pairs                                            .. ok

	439: fetch pairs                                            .. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 0 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 1 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 5 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 29 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 30 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -n 0 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -n 1 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -n 5 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 5 -n 5 < /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_cat:
	Generating test data file .................. done
	Generate BAM file #1                                        .. ok

	Generate CRAM file #1                                       .. ok

	Generating test data file .................. done
	Generate BAM file #2                                        .. ok

	Generate CRAM file #2                                       .. ok

	Generating test data file .................. done
	Generate BAM file #3                                        .. ok

	Generate CRAM file #3                                       .. ok

	Generating test data file .................. done
	Generate BAM file #4                                        .. ok

	Generate CRAM file #4                                       .. ok

	1: cat BAM files                                            .. ok

	2: cat recompressed BAM files                               .. ok

	3: cat CRAM files                                           .. ok

	4: cat BAM files to stdout                                  .. ok

	5: cat recompressed BAM files to stdout                     .. ok

	6: cat CRAM files to stdout                                 .. ok

	7: cat BAM files with new header                            .. ok

	8: cat recompressed BAM files with new header               .. ok

	9: cat CRAM files with new header                           .. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -0 test/bam2fq/1.1.fq.expected  | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -s test/bam2fq/1.1.fq.expected  | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -s test/bam2fq/5.s.fq.expected  | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/5.1.fq.expected test/bam2fq/5.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -i -1 test/bam2fq/12.1.fq.expected -2 test/bam2fq/12.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -i --index-format 'i*i*' -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import --barcode-tag OX -i -1 test/bam2fq/12.1.fq.expected -2 test/bam2fq/12.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq --barcode-tag OX -i --index-format 'i*i*' -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -T "" -1 test/bam2fq/6.1.fq.expected -2 test/bam2fq/6.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -T RG,BC,QT -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -T "*" -1 test/bam2fq/7.1.fq.expected -2 test/bam2fq/7.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -T RG,BC,QT,MD,ia -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -R rgid
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -r ID:rgid
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -r '@RG	ID:rgid'
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/2.interleaved.fq -T ""
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/3.interleaved.fq -i
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/4.aux.fq -T "*"
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/4.aux.fq -T ""
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/4.aux.fq -T XZ,XA,AA
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import --i1 test/import/5-i1.fq --i2  test/import/5-i2.fq --r1 test/import/5-r1.fq --r2 test/import/5-r2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import --i1 test/import/5-i1.fq --i2  test/import/5-i2.fq --r1 test/import/5-r1.fq --r2 test/import/5-r2.fq --barcode-tag OX --quality-tag BZ
.. ok

test_bam2fq:
	Generate BAM file                                           .. ok

	Generate CRAM file                                          .. ok

	1: fastq  (SAM input)                                       [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	2: fastq -n (SAM input)                                     [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	3: fastq  (BAM input)                                       [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	4: fastq -n (BAM input)                                     [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	5: fastq  (CRAM input)                                      [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	6: fastq -n (CRAM input)                                    [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.002.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.003.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.010.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -N --index-format 'n*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc_split.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -t -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -t -T MD,ia -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -i --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -i --index-format 'i*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -i --index-format 'i*i*' -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.703.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fasta  -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fa -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fa /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -o /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -s /tmp/VRyLb9rPAL/bam2fq.discard.s.fq -0 /tmp/VRyLb9rPAL/bam2fq.discard.0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -T ba,bb,bc,bd,be,bf,bg /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.013.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --index-format 'i8n1i8' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i1.fq --i2 /builddir/build/BUILD/samtools-1.15.1/test/i2.fq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.014.sam
.. ok

test_bam2fq:
	Generate BAM file (2 threads)                               .. ok

	Generate CRAM file (2 threads)                              .. ok

	1: fastq  (SAM input) (2 threads)                           [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	2: fastq -n (SAM input) (2 threads)                         [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	3: fastq  (BAM input) (2 threads)                           [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	4: fastq -n (BAM input) (2 threads)                         [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	5: fastq  (CRAM input) (2 threads)                          [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	6: fastq -n (CRAM input) (2 threads)                        [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.002.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.003.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.010.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -N --index-format 'n*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc_split.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -t -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -t -T MD,ia -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -i --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -i --index-format 'i*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -i --index-format 'i*i*' -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.703.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fasta -@ 2 -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fa -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fa /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -o /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -s /tmp/VRyLb9rPAL/bam2fq.discard.s.fq -0 /tmp/VRyLb9rPAL/bam2fq.discard.0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -T ba,bb,bc,bd,be,bf,bg /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.013.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --index-format 'i8n1i8' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i1.fq --i2 /builddir/build/BUILD/samtools-1.15.1/test/i2.fq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.014.sam
.. ok

test_depad:
	Generate BAM file                                           .. ok

	depad  (SAM input)                                          .. ok

	depad -s (SAM input)                                        .. ok

	depad -u (SAM input)                                        .. ok

	depad -1 (SAM input)                                        .. ok

	depad  (BAM input)                                          .. ok

	depad -s (BAM input)                                        .. ok

	depad -u (BAM input)                                        .. ok

	depad -1 (BAM input)                                        .. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/1_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/1_map_cigar_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/2_equal_cigar_full_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/2_equal_cigar_full_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/3_map_cigar_equal_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/3_map_cigar_equal_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/4_X_cigar_full_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/4_X_cigar_full_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/5_insert_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/5_insert_cigar_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa -i 0 /builddir/build/BUILD/samtools-1.15.1/test/stat/5_insert_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/7_supp.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/7_supp_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/8_secondary.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/8_secondary_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -S RG -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/1_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -S RG -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/10_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -t /builddir/build/BUILD/samtools-1.15.1/test/stat/11.stats.targets /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam ref1:10-24 ref1:30-46 ref1:39-56 | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -g 4 -t /builddir/build/BUILD/samtools-1.15.1/test/stat/11.stats.targets /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -g 4 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam ref1:10-24 ref1:30-46 ref1:39-56 | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_3reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -p -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_3reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_2reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -p -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_2reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_ok.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_ok_ox_bz.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_fail_bc_length.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.15.1/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_fail_hyphen.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.15.1/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_fail_qt_length.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.15.1/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I s1 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I grp2 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I grp3 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I Sample /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam -b /tmp/TPnXk9IwaE - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -r -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -cp -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a_regex.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b_regex.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -o - -s 1 -O sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -p -c -t PG -O SAM - /tmp/VRyLb9rPAL/merge.tag.1.bam /tmp/VRyLb9rPAL/merge.tag.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -p -c -n -t PG -O SAM - /tmp/VRyLb9rPAL/merge.tag.3.bam /tmp/VRyLb9rPAL/merge.tag.4.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge --no-PG -O SAM - /builddir/build/BUILD/samtools-1.15.1/test/merge/test_no_pg_rg_co.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge --no-PG -O SAM -L /builddir/build/BUILD/samtools-1.15.1/test/merge/merge.bed - /tmp/VRyLb9rPAL/merge.bed.1.bam /tmp/VRyLb9rPAL/merge.bed.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam -b /tmp/8Cxm0gIejt - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -r -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -cp -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a_regex.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b_regex.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -o - -s 1 -O sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -p -c -t PG -O SAM - /tmp/VRyLb9rPAL/merge.tag.1.bam /tmp/VRyLb9rPAL/merge.tag.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -p -c -n -t PG -O SAM - /tmp/VRyLb9rPAL/merge.tag.3.bam /tmp/VRyLb9rPAL/merge.tag.4.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 --no-PG -O SAM - /builddir/build/BUILD/samtools-1.15.1/test/merge/test_no_pg_rg_co.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 --no-PG -O SAM -L /builddir/build/BUILD/samtools-1.15.1/test/merge/merge.bed - /tmp/VRyLb9rPAL/merge.bed.1.bam /tmp/VRyLb9rPAL/merge.bed.2.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/VRyLb9rPAL/sortout
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -f /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/VRyLb9rPAL/sortout.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -o /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/VRyLb9rPAL/sorttmp
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -n -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -n -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -t AS -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -t FI -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/VRyLb9rPAL/sortout
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -f /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/VRyLb9rPAL/sortout.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -o /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/VRyLb9rPAL/sorttmp
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -n -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -n -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -t AS -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -t FI -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam -O /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate1.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate3.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam -f /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/1_fast_collate.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam -f -r 4 /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/2_fast_collate_with_tmp.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam -O /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate1.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate3.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam -f /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/1_fast_collate.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam -f -r 4 /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/2_fast_collate_with_tmp.sam
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/1_coord_sort.sam -

	ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname.

.. expected failure

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/2_isize_overflow.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/3_reverse_read_pp_lt.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/4_reverse_read_pp_equal.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/5_ct.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/6_ct_replace.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/7_two_read_mapped.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/8_isize_overflow_64bit.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/1_coord_sort.sam -

	ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname.

.. expected failure

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/2_isize_overflow.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/3_reverse_read_pp_lt.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/4_reverse_read_pp_equal.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/5_ct.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/6_ct_replace.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/7_two_read_mapped.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/8_isize_overflow_64bit.sam -
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools calmd -uAr /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.1.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.ref.fa
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools calmd -@ 2 -uAr /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.1.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.ref.fa
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.15.1/samtools idxstats /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.15.1/samtools idxstats /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.cram
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.15.1/samtools idxstats /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/1.quickcheck.badeof.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/2.quickcheck.badheader.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/3.quickcheck.ok.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/4.quickcheck.ok.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/5.quickcheck.scramble30.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/6.quickcheck.cram21.ok.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/7.quickcheck.cram30.ok.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/8.quickcheck.cram21.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/9.quickcheck.cram30.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck -v  /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/1.quickcheck.badeof.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/2.quickcheck.badheader.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/3.quickcheck.ok.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/4.quickcheck.ok.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/5.quickcheck.scramble30.truncated.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/6.quickcheck.cram21.ok.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/7.quickcheck.cram30.ok.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/8.quickcheck.cram21.truncated.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/9.quickcheck.cram30.truncated.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam | sed 's,.*/quickcheck/,,'
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck -uv /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam | sed 's,.*/quickcheck/,,'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.bam | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v21.cram | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader --in-place /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v21.cram && /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v21.cram | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader --in-place /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram && /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader -c "sed 's/2014 Genome/2019 Genome/g'" /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.bam | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader -c "sed 's/2014 Genome/2019 Genome/g'" /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -m overwrite_all /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -m orphan_only /builddir/build/BUILD/samtools-1.15.1/test/addrprg/2_fixup_orphan.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -R '1#9' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -r '@RG\tID:1#8\tCN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -m overwrite_all -R '1#8' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -r 'ID:1#8' -r 'CN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -w -r '@RG\tID:1#8\tCN:Sanger\tDS:Testing the editing code.' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -m overwrite_all /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -m orphan_only /builddir/build/BUILD/samtools-1.15.1/test/addrprg/2_fixup_orphan.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -R '1#9' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -r '@RG\tID:1#8\tCN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -m overwrite_all -R '1#8' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -r 'ID:1#8' -r 'CN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -w -r '@RG\tID:1#8\tCN:Sanger\tDS:Testing the editing code.' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/1_name_sort.sam -

	ERR: [markdup] error: queryname sorted, must be sorted by coordinate.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/2_bad_order.sam -

	ERR: [markdup] error: not in coordinate sorted order.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/3_missing_mc.sam -

	ERR: [markdup] error: no MC tag. Please run samtools fixmate on file first.
[markdup] error: unable to assign pair hash key.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/4_missing_ms.sam -

	ERR: [markdup] error: no ms score tag. Please run samtools fixmate on file first.
[markdup] error: no ms score tag. Please run samtools fixmate on file first.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/5_markdup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam -r --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/6_remove_dups.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/7_mark_supp_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 100 --mode s -t -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/8_optical_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t --include-fails -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/9_optical_dup_qcfail.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t -O sam --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+):([[:digit:]]+)$' --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+):([[:print:]]+)' --coords-order xyt --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+)' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+)$' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/12_optical_chain_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/1_name_sort.sam -

	ERR: [markdup] error: queryname sorted, must be sorted by coordinate.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/2_bad_order.sam -

	ERR: [markdup] error: not in coordinate sorted order.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/3_missing_mc.sam -

	ERR: [markdup] error: no MC tag. Please run samtools fixmate on file first.
[markdup] error: unable to assign pair hash key.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/4_missing_ms.sam -

	ERR: [markdup] error: no ms score tag. Please run samtools fixmate on file first.
[markdup] error: no ms score tag. Please run samtools fixmate on file first.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/5_markdup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam -r --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/6_remove_dups.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/7_mark_supp_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/8_optical_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t --include-fails -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/9_optical_dup_qcfail.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+):([[:digit:]]+)$' --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+):([[:print:]]+)' --coords-order xyt --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+)' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+)$' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/12_optical_chain_regex.sam -
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.15.1/samtools bedcov /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bed /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bam
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.15.1/samtools bedcov -j /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bed /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bam
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.15.1/samtools bedcov -g512 -G2048 /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov_gG.bed /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.15.1/samtools split  --output-fmt sam -u /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.15.1/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.15.1/samtools split  -@ 2 --output-fmt sam -u /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.15.1/test/split/split.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /tmp/VRyLb9rPAL/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /tmp/VRyLb9rPAL/longref.sam.gz CHROMOSOME_I:10000000114-10000000168
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG -L /builddir/build/BUILD/samtools-1.15.1/test/large_pos/test.bed /tmp/VRyLb9rPAL/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -O sam --no-PG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref_name.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -O sam --no-PG - /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref.sam /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref2.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools depth /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools depth -b /builddir/build/BUILD/samtools-1.15.1/test/large_pos/test.bed /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools tview -d T -p CHROMOSOME_I:10000000000 /tmp/VRyLb9rPAL/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort    -O sam --no-PG -n -m 10M test/large_pos/longref3.sam |
                     /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam --no-PG - - |
                     /builddir/build/BUILD/samtools-1.15.1/samtools sort    -O sam --no-PG -m 10M
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --filter-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --fail-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG  --keep-tag --output-fmt=sam --original -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG  --keep-tag --output-fmt=sam --strand --both-ends -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/2_both_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --filter-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --fail-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG  --keep-tag --output-fmt=sam --original -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG  --keep-tag --output-fmt=sam --strand --both-ends -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/2_both_test_data.sam
.. ok

test_ampliconstats:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconstats -@ 2 -S -t 50 -d 1,20,100 /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_hard_clipped.expected.sam /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_soft_clipped.expected.sam /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_soft_clipped_strand.expected.sam /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/2_both_clipped.expected.sam | egrep -v 'Samtools version|Command line'
.. ok

test_ampliconstats:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconstats -@ 2 -c 0 /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/multi_ref.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconstats/mixed_clipped.sam | egrep -v 'Samtools version|Command line'
.. ok


Number of tests:
    total            .. 807
    passed           .. 776
    failed           .. 0
    expected failure .. 31
    unexpected pass  .. 0

test/merge/test_bam_translate test/merge/test_bam_translate.tmp
test/merge/test_rtrans_build
test/merge/test_trans_tbl_init
cd test/mpileup && AWK="gawk" ../regression.sh mpileup.reg

=== Testing mpileup.reg regressions ===

EXPECTED FAIL: Task failed, but expected to fail;
when running $samtools mpileup -ABQ0 -a -l xx.bed3 xx#depth3.bam

Expected   passes:   118
Unexpected passes:   0
Expected   failures: 1
Unexpected failures: 0
=> PASS
cd test/mpileup && AWK="gawk" ../regression.sh depth.reg

=== Testing depth.reg regressions ===

EXPECTED FAIL: Task failed, but expected to fail;
when running $samtools depth -a -b xx.bed3 xx#depth3.bam

Expected   passes:   47
Unexpected passes:   0
Expected   failures: 1
Unexpected failures: 0
=> PASS
cd test/consensus && AWK="gawk" ../regression.sh consensus.reg

=== Testing consensus.reg regressions ===

Expected   passes:   62
Unexpected passes:   0
Expected   failures: 0
Unexpected failures: 0
=> PASS
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: samtools-1.15.1-1.fc38.i686
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.vAMi0G
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ DOCDIR=/builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/share/doc/samtools
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/share/doc/samtools
+ cp -pr AUTHORS /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/share/doc/samtools
+ cp -pr ChangeLog.old /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/share/doc/samtools
+ cp -pr NEWS /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/share/doc/samtools
+ cp -pr examples/ /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/share/doc/samtools
+ RPM_EC=0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.LLjW5H
++ jobs -p
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ LICENSEDIR=/builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/share/licenses/samtools
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/share/licenses/samtools
+ cp -pr LICENSE /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386/usr/share/licenses/samtools
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: samtools = 1.15.1-1.fc38 samtools(x86-32) = 1.15.1-1.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.33) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libhts.so.3 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.29) libncursesw.so.6 libtinfo.so.6 libz.so.1 libz.so.1(ZLIB_1.2.3.3) rtld(GNU_HASH)
Processing files: samtools-debugsource-1.15.1-1.fc38.i686
Provides: samtools-debugsource = 1.15.1-1.fc38 samtools-debugsource(x86-32) = 1.15.1-1.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: samtools-debuginfo-1.15.1-1.fc38.i686
Provides: debuginfo(build-id) = 1fab8d610ec05cefd5008f1cf2ba5b21312008eb debuginfo(build-id) = 4fd00ad29d7c82996268c6b44f47bb844e7fae8a debuginfo(build-id) = 57cb629e668b0567c6e1244adff9e7801b86bd7e debuginfo(build-id) = 6c12fcf2d07344d6297b9fb3843ec6fc71156e8f debuginfo(build-id) = c0ad1ab35bbeba5c034c6545b73fe8512e96853a debuginfo(build-id) = d93744e267b9085826a174d01fd1097549498151 debuginfo(build-id) = de3e1e0d391f6890c18ff2d51d601ce90f991c81 samtools-debuginfo = 1.15.1-1.fc38 samtools-debuginfo(x86-32) = 1.15.1-1.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: samtools-debugsource(x86-32) = 1.15.1-1.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386
Wrote: /builddir/build/RPMS/samtools-1.15.1-1.fc38.i686.rpm
Wrote: /builddir/build/RPMS/samtools-debuginfo-1.15.1-1.fc38.i686.rpm
Wrote: /builddir/build/RPMS/samtools-debugsource-1.15.1-1.fc38.i686.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.6c0WtJ
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/samtools-1.15.1-1.fc38.i386
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.YVQPGK
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf samtools-1.15.1 samtools-1.15.1.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild samtools-1.15.1-1.fc38.src.rpm
Finish: build phase for samtools-1.15.1-1.fc38.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1672304886.477783/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-i686-1672304886.477783/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-i686-1672304886.477783/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/samtools-1.15.1-1.fc38.src.rpm) Config(child) 1 minutes 32 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool