Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c29a' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5175105 --chroot fedora-rawhide-ppc64le --detached
Version: 0.62
PID: 11517
Logging PID: 11518
Task:
{'appstream': False,
'background': True,
'build_id': 5175105,
'buildroot_pkgs': [],
'chroot': 'fedora-rawhide-ppc64le',
'enable_net': False,
'fedora_review': False,
'git_hash': '05ae938cafbc06f622e6f396bf5e52a0a4ece096',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/pymol',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'pymol',
'package_version': '2.5.0-5',
'project_dirname': 'gcc-13-test',
'project_name': 'gcc-13-test',
'project_owner': 'jakub',
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jakub/gcc-13-test/fedora-rawhide-ppc64le/',
'id': 'copr_base',
'name': 'Copr repository'},
{'baseurl': 'https://jakub.fedorapeople.org/fedora-gcc13-$arch/',
'id': 'https_jakub_fedorapeople_org_fedora_gcc13_arch',
'name': 'Additional repo https_jakub_fedorapeople_org_fedora_gcc13_arch'}],
'sandbox': 'jakub/gcc-13-test--jakub',
'source_json': {},
'source_type': None,
'submitter': 'jakub',
'tags': [],
'task_id': '5175105-fedora-rawhide-ppc64le',
'timeout': 115200,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/pymol /var/lib/copr-rpmbuild/workspace/workdir-qrmi4v7e/pymol --depth 500 --no-single-branch --recursive
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/pymol', '/var/lib/copr-rpmbuild/workspace/workdir-qrmi4v7e/pymol', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-qrmi4v7e/pymol'...
Running: git checkout 05ae938cafbc06f622e6f396bf5e52a0a4ece096
cmd: ['git', 'checkout', '05ae938cafbc06f622e6f396bf5e52a0a4ece096']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-qrmi4v7e/pymol
rc: 0
stdout:
stderr: Note: switching to '05ae938cafbc06f622e6f396bf5e52a0a4ece096'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at 05ae938 automatic import of pymol
Running: copr-distgit-client sources
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-qrmi4v7e/pymol
rc: 0
stdout:
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading pymol-open-source-2.5.0.tar.gz
INFO: Calling: curl -H Pragma: -o pymol-open-source-2.5.0.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jakub/gcc-13-test/pymol/pymol-open-source-2.5.0.tar.gz/md5/1c2d43789dd5580958fd75672ecfd8e7/pymol-open-source-2.5.0.tar.gz
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 9.9M 100 9.9M 0 0 21.2M 0 --:--:-- --:--:-- --:--:-- 21.2M
INFO: Reading stdout from command: md5sum pymol-open-source-2.5.0.tar.gz
INFO: Downloading pymol.png
INFO: Calling: curl -H Pragma: -o pymol.png --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jakub/gcc-13-test/pymol/pymol.png/md5/3bbd85dbd40f588f505ad988b6df2933/pymol.png
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 19466 100 19466 0 0 158k 0 --:--:-- --:--:-- --:--:-- 159k
INFO: Reading stdout from command: md5sum pymol.png
Running (timeout=115200): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-qrmi4v7e/pymol/pymol.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-qrmi4v7e/pymol --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1672073286.329146 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-qrmi4v7e/pymol/pymol.spec) Config(fedora-rawhide-ppc64le)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1672073286.329146/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start(bootstrap): dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity
This system is not registered with an entitlement server. You can use subscription-manager to register.
Copr repository 48 MB/s | 32 MB 00:00
Additional repo https_jakub_fedorapeople_org_fe 232 kB/s | 84 kB 00:00
fedora 22 MB/s | 60 MB 00:02
Dependencies resolved.
==========================================================================================================================
Package Arch Version Repository Size
==========================================================================================================================
Installing:
dnf noarch 4.14.0-1.fc38 fedora 480 k
dnf-plugins-core noarch 4.3.1-1.fc38 fedora 34 k
Installing dependencies:
alternatives ppc64le 1.21-1.fc38 copr_base 41 k
audit-libs ppc64le 3.0.9-2.fc38 fedora 130 k
basesystem noarch 11-14.fc37 fedora 7.0 k
bash ppc64le 5.2.9-3.fc38 copr_base 1.9 M
bzip2-libs ppc64le 1.0.8-12.fc38 copr_base 48 k
ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k
coreutils ppc64le 9.1-8.fc38 copr_base 1.3 M
coreutils-common ppc64le 9.1-8.fc38 copr_base 2.0 M
crypto-policies noarch 20221215-1.gita4c31a3.fc38 fedora 90 k
curl ppc64le 7.87.0-1.fc38 copr_base 348 k
cyrus-sasl-lib ppc64le 2.1.28-8.fc38 copr_base 882 k
dbus-libs ppc64le 1:1.14.4-1.fc38 copr_base 177 k
dnf-data noarch 4.14.0-1.fc38 fedora 43 k
elfutils-default-yama-scope noarch 0.188-3.fc38 copr_base 16 k
elfutils-libelf ppc64le 0.188-3.fc38 copr_base 205 k
elfutils-libs ppc64le 0.188-3.fc38 copr_base 291 k
expat ppc64le 2.5.0-1.fc38 copr_base 117 k
fedora-gpg-keys noarch 38-0.3 fedora 125 k
fedora-release noarch 38-0.6 fedora 11 k
fedora-release-common noarch 38-0.6 fedora 21 k
fedora-release-identity-basic noarch 38-0.6 fedora 11 k
fedora-repos noarch 38-0.3 fedora 10 k
fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k
file-libs ppc64le 5.42-4.fc38 copr_base 688 k
filesystem ppc64le 3.18-2.fc37 fedora 1.1 M
findutils ppc64le 1:4.9.0-2.fc38 copr_base 530 k
gawk ppc64le 5.1.1-4.fc38 copr_base 1.0 M
gdbm-libs ppc64le 1:1.23-2.fc38 copr_base 62 k
glib2 ppc64le 2.74.1-2.fc38 copr_base 2.8 M
glibc ppc64le 2.36.9000-19.fc38 fedora 2.2 M
glibc-common ppc64le 2.36.9000-19.fc38 fedora 322 k
glibc-minimal-langpack ppc64le 2.36.9000-19.fc38 fedora 30 k
gmp ppc64le 1:6.2.1-3.fc38 copr_base 304 k
gnupg2 ppc64le 2.3.8-1.fc38 copr_base 2.7 M
gnutls ppc64le 3.7.8-9.fc38 copr_base 1.1 M
gpgme ppc64le 1.17.1-3.fc38 copr_base 229 k
grep ppc64le 3.8-1.fc38 copr_base 293 k
ima-evm-utils ppc64le 1.4-6.fc38 copr_base 67 k
json-c ppc64le 0.16-3.fc38 copr_base 46 k
keyutils-libs ppc64le 1.6.1-5.fc38 copr_base 33 k
krb5-libs ppc64le 1.20.1-3.fc38 copr_base 805 k
libacl ppc64le 2.3.1-4.fc38 copr_base 26 k
libarchive ppc64le 3.6.1-3.fc38 copr_base 464 k
libassuan ppc64le 2.5.5-5.fc38 copr_base 71 k
libattr ppc64le 2.5.1-5.fc38 copr_base 19 k
libb2 ppc64le 0.98.1-7.fc38 copr_base 26 k
libblkid ppc64le 2.38.1-3.fc38 fedora 122 k
libbrotli ppc64le 1.0.9-9.fc38 copr_base 345 k
libcap ppc64le 2.48-5.fc38 copr_base 73 k
libcap-ng ppc64le 0.8.3-4.fc38 copr_base 34 k
libcom_err ppc64le 1.46.5-3.fc38 copr_base 26 k
libcomps ppc64le 0.1.18-4.fc38 copr_base 84 k
libcurl ppc64le 7.87.0-1.fc38 copr_base 334 k
libdnf ppc64le 0.68.0-1.fc38 copr_base 668 k
libevent ppc64le 2.1.12-7.fc38 copr_base 276 k
libffi ppc64le 3.4.4-1.fc38 copr_base 39 k
libfsverity ppc64le 1.4-8.fc38 copr_base 20 k
libgcc ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 88 k
libgcrypt ppc64le 1.10.1-6.fc38 copr_base 596 k
libgomp ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 314 k
libgpg-error ppc64le 1.46-1.fc38 copr_base 233 k
libidn2 ppc64le 2.3.4-1.fc38 copr_base 157 k
libksba ppc64le 1.6.3-1.fc38 copr_base 175 k
libmodulemd ppc64le 2.14.0-4.fc38 copr_base 233 k
libmount ppc64le 2.38.1-3.fc38 fedora 154 k
libnghttp2 ppc64le 1.51.0-1.fc38 copr_base 85 k
libnsl2 ppc64le 2.0.0-4.fc38 copr_base 33 k
libpsl ppc64le 0.21.1-6.fc38 copr_base 67 k
librepo ppc64le 1.15.1-1.fc38 copr_base 104 k
libreport-filesystem noarch 2.17.6-1.fc38 copr_base 14 k
libselinux ppc64le 3.4-6.fc38 copr_base 100 k
libsemanage ppc64le 3.4-6.fc38 copr_base 131 k
libsepol ppc64le 3.4-4.fc38 copr_base 355 k
libsigsegv ppc64le 2.14-3.fc38 copr_base 28 k
libsmartcols ppc64le 2.38.1-3.fc38 fedora 70 k
libsolv ppc64le 0.7.22-3.fc38 copr_base 467 k
libssh ppc64le 0.10.4-2.fc38 copr_base 236 k
libssh-config noarch 0.10.4-2.fc38 copr_base 9.2 k
libstdc++ ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 932 k
libtasn1 ppc64le 4.19.0-1.fc38 copr_base 81 k
libtirpc ppc64le 1.3.3-0.fc38 copr_base 108 k
libunistring ppc64le 1.0-2.fc38 copr_base 575 k
libuuid ppc64le 2.38.1-3.fc38 fedora 29 k
libverto ppc64le 0.3.2-4.fc38 copr_base 23 k
libxcrypt ppc64le 4.4.33-5.fc38 copr_base 133 k
libxml2 ppc64le 2.10.3-2.fc38 copr_base 780 k
libyaml ppc64le 0.2.5-8.fc38 copr_base 70 k
libzstd ppc64le 1.5.2-3.fc37 fedora 316 k
lua-libs ppc64le 5.4.4-6.fc38 copr_base 149 k
lz4-libs ppc64le 1.9.3-5.fc38 copr_base 90 k
mpdecimal ppc64le 2.5.1-4.fc38 copr_base 118 k
mpfr ppc64le 4.1.1-2.fc38 copr_base 609 k
ncurses-base noarch 6.3-5.20221126.fc38 copr_base 62 k
ncurses-libs ppc64le 6.3-5.20221126.fc38 copr_base 374 k
nettle ppc64le 3.8-2.fc38 copr_base 443 k
npth ppc64le 1.6-10.fc38 copr_base 25 k
openldap ppc64le 2.6.3-1.fc38 copr_base 288 k
openssl-libs ppc64le 1:3.0.5-6.fc38 copr_base 2.2 M
p11-kit ppc64le 0.24.1-5.fc38 copr_base 359 k
p11-kit-trust ppc64le 0.24.1-5.fc38 copr_base 150 k
pcre2 ppc64le 10.40-1.fc38.1 copr_base 242 k
pcre2-syntax noarch 10.40-1.fc38.1 copr_base 143 k
popt ppc64le 1.19-1.fc38 copr_base 64 k
publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k
python-pip-wheel noarch 22.3.1-1.fc38 fedora 1.4 M
python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k
python3 ppc64le 3.11.1-1.fc38 fedora 27 k
python3-dateutil noarch 1:2.8.2-4.fc37 fedora 361 k
python3-dbus ppc64le 1.3.2-1.fc38 copr_base 152 k
python3-distro noarch 1.8.0-1.fc38 fedora 49 k
python3-dnf noarch 4.14.0-1.fc38 fedora 607 k
python3-dnf-plugins-core noarch 4.3.1-1.fc38 fedora 277 k
python3-gpg ppc64le 1.17.1-3.fc38 copr_base 285 k
python3-hawkey ppc64le 0.68.0-1.fc38 copr_base 109 k
python3-libcomps ppc64le 0.1.18-4.fc38 copr_base 53 k
python3-libdnf ppc64le 0.68.0-1.fc38 copr_base 815 k
python3-libs ppc64le 3.11.1-1.fc38 fedora 9.7 M
python3-rpm ppc64le 4.18.0-8.fc38 fedora 101 k
python3-six noarch 1.16.0-8.fc37 fedora 42 k
readline ppc64le 8.2-2.fc38 fedora 228 k
rpm ppc64le 4.18.0-8.fc38 fedora 568 k
rpm-build-libs ppc64le 4.18.0-8.fc38 fedora 103 k
rpm-libs ppc64le 4.18.0-8.fc38 fedora 355 k
rpm-sequoia ppc64le 1.2.0-1.fc38 fedora 1.4 M
rpm-sign-libs ppc64le 4.18.0-8.fc38 fedora 27 k
sed ppc64le 4.8-11.fc37 fedora 313 k
setup noarch 2.14.3-1.fc38 fedora 152 k
shadow-utils ppc64le 2:4.13-3.fc38 fedora 1.3 M
sqlite-libs ppc64le 3.40.0-1.fc38 fedora 776 k
systemd-libs ppc64le 252.4-598.fc38 fedora 666 k
tpm2-tss ppc64le 4.0.0-0.1.rc2.fc38 fedora 631 k
tzdata noarch 2022g-1.fc38 fedora 716 k
xz-libs ppc64le 5.2.9-1.fc38 fedora 104 k
zchunk-libs ppc64le 1.2.3-1.fc38 fedora 55 k
zlib ppc64le 1.2.13-1.fc38 fedora 100 k
Transaction Summary
==========================================================================================================================
Install 137 Packages
Total download size: 60 M
Installed size: 284 M
Downloading Packages:
(1/137): alternatives-1.21-1.fc38.ppc64le.rpm 209 kB/s | 41 kB 00:00
(2/137): bzip2-libs-1.0.8-12.fc38.ppc64le.rpm 240 kB/s | 48 kB 00:00
(3/137): bash-5.2.9-3.fc38.ppc64le.rpm 7.5 MB/s | 1.9 MB 00:00
(4/137): coreutils-9.1-8.fc38.ppc64le.rpm 19 MB/s | 1.3 MB 00:00
(5/137): coreutils-common-9.1-8.fc38.ppc64le.rp 24 MB/s | 2.0 MB 00:00
(6/137): curl-7.87.0-1.fc38.ppc64le.rpm 8.6 MB/s | 348 kB 00:00
(7/137): cyrus-sasl-lib-2.1.28-8.fc38.ppc64le.r 34 MB/s | 882 kB 00:00
(8/137): dbus-libs-1.14.4-1.fc38.ppc64le.rpm 11 MB/s | 177 kB 00:00
(9/137): elfutils-default-yama-scope-0.188-3.fc 1.2 MB/s | 16 kB 00:00
(10/137): elfutils-libelf-0.188-3.fc38.ppc64le. 12 MB/s | 205 kB 00:00
(11/137): elfutils-libs-0.188-3.fc38.ppc64le.rp 15 MB/s | 291 kB 00:00
(12/137): expat-2.5.0-1.fc38.ppc64le.rpm 5.0 MB/s | 117 kB 00:00
(13/137): file-libs-5.42-4.fc38.ppc64le.rpm 24 MB/s | 688 kB 00:00
(14/137): findutils-4.9.0-2.fc38.ppc64le.rpm 20 MB/s | 530 kB 00:00
(15/137): gawk-5.1.1-4.fc38.ppc64le.rpm 35 MB/s | 1.0 MB 00:00
(16/137): gdbm-libs-1.23-2.fc38.ppc64le.rpm 2.7 MB/s | 62 kB 00:00
(17/137): glib2-2.74.1-2.fc38.ppc64le.rpm 42 MB/s | 2.8 MB 00:00
(18/137): gmp-6.2.1-3.fc38.ppc64le.rpm 5.3 MB/s | 304 kB 00:00
(19/137): gnupg2-2.3.8-1.fc38.ppc64le.rpm 36 MB/s | 2.7 MB 00:00
(20/137): gnutls-3.7.8-9.fc38.ppc64le.rpm 40 MB/s | 1.1 MB 00:00
(21/137): gpgme-1.17.1-3.fc38.ppc64le.rpm 7.7 MB/s | 229 kB 00:00
(22/137): grep-3.8-1.fc38.ppc64le.rpm 23 MB/s | 293 kB 00:00
(23/137): ima-evm-utils-1.4-6.fc38.ppc64le.rpm 6.5 MB/s | 67 kB 00:00
(24/137): json-c-0.16-3.fc38.ppc64le.rpm 4.5 MB/s | 46 kB 00:00
(25/137): keyutils-libs-1.6.1-5.fc38.ppc64le.rp 3.7 MB/s | 33 kB 00:00
(26/137): krb5-libs-1.20.1-3.fc38.ppc64le.rpm 36 MB/s | 805 kB 00:00
(27/137): libacl-2.3.1-4.fc38.ppc64le.rpm 1.3 MB/s | 26 kB 00:00
(28/137): libarchive-3.6.1-3.fc38.ppc64le.rpm 20 MB/s | 464 kB 00:00
(29/137): libassuan-2.5.5-5.fc38.ppc64le.rpm 6.8 MB/s | 71 kB 00:00
(30/137): libattr-2.5.1-5.fc38.ppc64le.rpm 1.8 MB/s | 19 kB 00:00
(31/137): libb2-0.98.1-7.fc38.ppc64le.rpm 2.6 MB/s | 26 kB 00:00
(32/137): libbrotli-1.0.9-9.fc38.ppc64le.rpm 21 MB/s | 345 kB 00:00
(33/137): libcap-2.48-5.fc38.ppc64le.rpm 4.3 MB/s | 73 kB 00:00
(34/137): libcap-ng-0.8.3-4.fc38.ppc64le.rpm 2.2 MB/s | 34 kB 00:00
(35/137): libcom_err-1.46.5-3.fc38.ppc64le.rpm 2.3 MB/s | 26 kB 00:00
(36/137): libcomps-0.1.18-4.fc38.ppc64le.rpm 6.5 MB/s | 84 kB 00:00
(37/137): libcurl-7.87.0-1.fc38.ppc64le.rpm 21 MB/s | 334 kB 00:00
(38/137): libdnf-0.68.0-1.fc38.ppc64le.rpm 33 MB/s | 668 kB 00:00
(39/137): libevent-2.1.12-7.fc38.ppc64le.rpm 13 MB/s | 276 kB 00:00
(40/137): libffi-3.4.4-1.fc38.ppc64le.rpm 2.0 MB/s | 39 kB 00:00
(41/137): libfsverity-1.4-8.fc38.ppc64le.rpm 2.2 MB/s | 20 kB 00:00
(42/137): libgcrypt-1.10.1-6.fc38.ppc64le.rpm 31 MB/s | 596 kB 00:00
(43/137): libgpg-error-1.46-1.fc38.ppc64le.rpm 11 MB/s | 233 kB 00:00
(44/137): libidn2-2.3.4-1.fc38.ppc64le.rpm 9.3 MB/s | 157 kB 00:00
(45/137): libksba-1.6.3-1.fc38.ppc64le.rpm 9.8 MB/s | 175 kB 00:00
(46/137): libmodulemd-2.14.0-4.fc38.ppc64le.rpm 13 MB/s | 233 kB 00:00
(47/137): libnghttp2-1.51.0-1.fc38.ppc64le.rpm 4.8 MB/s | 85 kB 00:00
(48/137): libnsl2-2.0.0-4.fc38.ppc64le.rpm 3.2 MB/s | 33 kB 00:00
(49/137): libpsl-0.21.1-6.fc38.ppc64le.rpm 5.6 MB/s | 67 kB 00:00
(50/137): librepo-1.15.1-1.fc38.ppc64le.rpm 7.7 MB/s | 104 kB 00:00
(51/137): libreport-filesystem-2.17.6-1.fc38.no 1.2 MB/s | 14 kB 00:00
(52/137): libselinux-3.4-6.fc38.ppc64le.rpm 8.2 MB/s | 100 kB 00:00
(53/137): libsemanage-3.4-6.fc38.ppc64le.rpm 11 MB/s | 131 kB 00:00
(54/137): libsepol-3.4-4.fc38.ppc64le.rpm 21 MB/s | 355 kB 00:00
(55/137): libsigsegv-2.14-3.fc38.ppc64le.rpm 2.1 MB/s | 28 kB 00:00
(56/137): libsolv-0.7.22-3.fc38.ppc64le.rpm 25 MB/s | 467 kB 00:00
(57/137): libssh-0.10.4-2.fc38.ppc64le.rpm 18 MB/s | 236 kB 00:00
(58/137): libssh-config-0.10.4-2.fc38.noarch.rp 738 kB/s | 9.2 kB 00:00
(59/137): libtasn1-4.19.0-1.fc38.ppc64le.rpm 8.1 MB/s | 81 kB 00:00
(60/137): libtirpc-1.3.3-0.fc38.ppc64le.rpm 9.8 MB/s | 108 kB 00:00
(61/137): libunistring-1.0-2.fc38.ppc64le.rpm 31 MB/s | 575 kB 00:00
(62/137): libverto-0.3.2-4.fc38.ppc64le.rpm 1.5 MB/s | 23 kB 00:00
(63/137): libxcrypt-4.4.33-5.fc38.ppc64le.rpm 12 MB/s | 133 kB 00:00
(64/137): libxml2-2.10.3-2.fc38.ppc64le.rpm 34 MB/s | 780 kB 00:00
(65/137): libyaml-0.2.5-8.fc38.ppc64le.rpm 2.9 MB/s | 70 kB 00:00
(66/137): lua-libs-5.4.4-6.fc38.ppc64le.rpm 6.8 MB/s | 149 kB 00:00
(67/137): lz4-libs-1.9.3-5.fc38.ppc64le.rpm 7.9 MB/s | 90 kB 00:00
(68/137): mpdecimal-2.5.1-4.fc38.ppc64le.rpm 10 MB/s | 118 kB 00:00
(69/137): mpfr-4.1.1-2.fc38.ppc64le.rpm 30 MB/s | 609 kB 00:00
(70/137): ncurses-base-6.3-5.20221126.fc38.noar 5.2 MB/s | 62 kB 00:00
(71/137): ncurses-libs-6.3-5.20221126.fc38.ppc6 26 MB/s | 374 kB 00:00
(72/137): nettle-3.8-2.fc38.ppc64le.rpm 28 MB/s | 443 kB 00:00
(73/137): npth-1.6-10.fc38.ppc64le.rpm 1.6 MB/s | 25 kB 00:00
(74/137): openldap-2.6.3-1.fc38.ppc64le.rpm 21 MB/s | 288 kB 00:00
(75/137): openssl-libs-3.0.5-6.fc38.ppc64le.rpm 44 MB/s | 2.2 MB 00:00
(76/137): p11-kit-0.24.1-5.fc38.ppc64le.rpm 6.4 MB/s | 359 kB 00:00
(77/137): p11-kit-trust-0.24.1-5.fc38.ppc64le.r 2.8 MB/s | 150 kB 00:00
(78/137): pcre2-10.40-1.fc38.1.ppc64le.rpm 21 MB/s | 242 kB 00:00
(79/137): pcre2-syntax-10.40-1.fc38.1.noarch.rp 13 MB/s | 143 kB 00:00
(80/137): popt-1.19-1.fc38.ppc64le.rpm 5.7 MB/s | 64 kB 00:00
(81/137): python3-dbus-1.3.2-1.fc38.ppc64le.rpm 14 MB/s | 152 kB 00:00
(82/137): python3-gpg-1.17.1-3.fc38.ppc64le.rpm 20 MB/s | 285 kB 00:00
(83/137): python3-hawkey-0.68.0-1.fc38.ppc64le. 7.4 MB/s | 109 kB 00:00
(84/137): python3-libcomps-0.1.18-4.fc38.ppc64l 5.6 MB/s | 53 kB 00:00
(85/137): python3-libdnf-0.68.0-1.fc38.ppc64le. 40 MB/s | 815 kB 00:00
(86/137): libgcc-13.0.0-0.4.fc38.ppc64le.rpm 329 kB/s | 88 kB 00:00
(87/137): libgomp-13.0.0-0.4.fc38.ppc64le.rpm 885 kB/s | 314 kB 00:00
(88/137): audit-libs-3.0.9-2.fc38.ppc64le.rpm 1.0 MB/s | 130 kB 00:00
(89/137): basesystem-11-14.fc37.noarch.rpm 163 kB/s | 7.0 kB 00:00
(90/137): crypto-policies-20221215-1.gita4c31a3 1.2 MB/s | 90 kB 00:00
(91/137): ca-certificates-2022.2.54-5.fc37.noar 8.6 MB/s | 829 kB 00:00
(92/137): dnf-data-4.14.0-1.fc38.noarch.rpm 1.8 MB/s | 43 kB 00:00
(93/137): libstdc++-13.0.0-0.4.fc38.ppc64le.rpm 2.4 MB/s | 932 kB 00:00
(94/137): dnf-plugins-core-4.3.1-1.fc38.noarch. 1.5 MB/s | 34 kB 00:00
(95/137): fedora-release-38-0.6.noarch.rpm 496 kB/s | 11 kB 00:00
(96/137): dnf-4.14.0-1.fc38.noarch.rpm 5.8 MB/s | 480 kB 00:00
(97/137): fedora-release-common-38-0.6.noarch.r 976 kB/s | 21 kB 00:00
(98/137): fedora-release-identity-basic-38-0.6. 531 kB/s | 11 kB 00:00
(99/137): fedora-repos-38-0.3.noarch.rpm 469 kB/s | 10 kB 00:00
(100/137): fedora-repos-rawhide-38-0.3.noarch.r 450 kB/s | 9.7 kB 00:00
(101/137): fedora-gpg-keys-38-0.3.noarch.rpm 1.0 MB/s | 125 kB 00:00
(102/137): filesystem-3.18-2.fc37.ppc64le.rpm 21 MB/s | 1.1 MB 00:00
(103/137): glibc-minimal-langpack-2.36.9000-19. 1.3 MB/s | 30 kB 00:00
(104/137): glibc-2.36.9000-19.fc38.ppc64le.rpm 24 MB/s | 2.2 MB 00:00
(105/137): libblkid-2.38.1-3.fc38.ppc64le.rpm 5.0 MB/s | 122 kB 00:00
(106/137): glibc-common-2.36.9000-19.fc38.ppc64 4.8 MB/s | 322 kB 00:00
(107/137): libmount-2.38.1-3.fc38.ppc64le.rpm 6.3 MB/s | 154 kB 00:00
(108/137): libsmartcols-2.38.1-3.fc38.ppc64le.r 3.0 MB/s | 70 kB 00:00
(109/137): libuuid-2.38.1-3.fc38.ppc64le.rpm 1.2 MB/s | 29 kB 00:00
(110/137): libzstd-1.5.2-3.fc37.ppc64le.rpm 12 MB/s | 316 kB 00:00
(111/137): publicsuffix-list-dafsa-20221208-1.f 2.5 MB/s | 59 kB 00:00
(112/137): python3-3.11.1-1.fc38.ppc64le.rpm 1.2 MB/s | 27 kB 00:00
(113/137): python-setuptools-wheel-65.5.1-1.fc3 21 MB/s | 715 kB 00:00
(114/137): python3-dateutil-2.8.2-4.fc37.noarch 12 MB/s | 361 kB 00:00
(115/137): python3-distro-1.8.0-1.fc38.noarch.r 2.1 MB/s | 49 kB 00:00
(116/137): python-pip-wheel-22.3.1-1.fc38.noarc 17 MB/s | 1.4 MB 00:00
(117/137): python3-dnf-4.14.0-1.fc38.noarch.rpm 19 MB/s | 607 kB 00:00
(118/137): python3-dnf-plugins-core-4.3.1-1.fc3 8.4 MB/s | 277 kB 00:00
(119/137): python3-rpm-4.18.0-8.fc38.ppc64le.rp 4.1 MB/s | 101 kB 00:00
(120/137): python3-six-1.16.0-8.fc37.noarch.rpm 1.8 MB/s | 42 kB 00:00
(121/137): readline-8.2-2.fc38.ppc64le.rpm 7.6 MB/s | 228 kB 00:00
(122/137): rpm-4.18.0-8.fc38.ppc64le.rpm 15 MB/s | 568 kB 00:00
(123/137): rpm-build-libs-4.18.0-8.fc38.ppc64le 3.3 MB/s | 103 kB 00:00
(124/137): rpm-libs-4.18.0-8.fc38.ppc64le.rpm 11 MB/s | 355 kB 00:00
(125/137): rpm-sign-libs-4.18.0-8.fc38.ppc64le. 1.1 MB/s | 27 kB 00:00
(126/137): rpm-sequoia-1.2.0-1.fc38.ppc64le.rpm 30 MB/s | 1.4 MB 00:00
(127/137): python3-libs-3.11.1-1.fc38.ppc64le.r 47 MB/s | 9.7 MB 00:00
(128/137): setup-2.14.3-1.fc38.noarch.rpm 2.6 MB/s | 152 kB 00:00
(129/137): sed-4.8-11.fc37.ppc64le.rpm 4.3 MB/s | 313 kB 00:00
(130/137): sqlite-libs-3.40.0-1.fc38.ppc64le.rp 12 MB/s | 776 kB 00:00
(131/137): shadow-utils-4.13-3.fc38.ppc64le.rpm 14 MB/s | 1.3 MB 00:00
(132/137): tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le. 15 MB/s | 631 kB 00:00
(133/137): systemd-libs-252.4-598.fc38.ppc64le. 5.8 MB/s | 666 kB 00:00
(134/137): tzdata-2022g-1.fc38.noarch.rpm 19 MB/s | 716 kB 00:00
(135/137): xz-libs-5.2.9-1.fc38.ppc64le.rpm 4.2 MB/s | 104 kB 00:00
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(137/137): zlib-1.2.13-1.fc38.ppc64le.rpm 3.8 MB/s | 100 kB 00:00
--------------------------------------------------------------------------------
Total 29 MB/s | 60 MB 00:02
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0xEB10B464:
Userid : "Fedora (38) <fedora-38-primary@fedoraproject.org>"
Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary
Key imported successfully
fedora 1.6 MB/s | 1.6 kB 00:00
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x5323552A:
Userid : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Running scriptlet: filesystem-3.18-2.fc37.ppc64le 1/1
Preparing : 1/1
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warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew
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useradd: Warning: missing or non-executable shell '/usr/sbin/nologin'
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Verifying : gawk-5.1.1-4.fc38.ppc64le 15/137
Verifying : gdbm-libs-1:1.23-2.fc38.ppc64le 16/137
Verifying : glib2-2.74.1-2.fc38.ppc64le 17/137
Verifying : gmp-1:6.2.1-3.fc38.ppc64le 18/137
Verifying : gnupg2-2.3.8-1.fc38.ppc64le 19/137
Verifying : gnutls-3.7.8-9.fc38.ppc64le 20/137
Verifying : gpgme-1.17.1-3.fc38.ppc64le 21/137
Verifying : grep-3.8-1.fc38.ppc64le 22/137
Verifying : ima-evm-utils-1.4-6.fc38.ppc64le 23/137
Verifying : json-c-0.16-3.fc38.ppc64le 24/137
Verifying : keyutils-libs-1.6.1-5.fc38.ppc64le 25/137
Verifying : krb5-libs-1.20.1-3.fc38.ppc64le 26/137
Verifying : libacl-2.3.1-4.fc38.ppc64le 27/137
Verifying : libarchive-3.6.1-3.fc38.ppc64le 28/137
Verifying : libassuan-2.5.5-5.fc38.ppc64le 29/137
Verifying : libattr-2.5.1-5.fc38.ppc64le 30/137
Verifying : libb2-0.98.1-7.fc38.ppc64le 31/137
Verifying : libbrotli-1.0.9-9.fc38.ppc64le 32/137
Verifying : libcap-2.48-5.fc38.ppc64le 33/137
Verifying : libcap-ng-0.8.3-4.fc38.ppc64le 34/137
Verifying : libcom_err-1.46.5-3.fc38.ppc64le 35/137
Verifying : libcomps-0.1.18-4.fc38.ppc64le 36/137
Verifying : libcurl-7.87.0-1.fc38.ppc64le 37/137
Verifying : libdnf-0.68.0-1.fc38.ppc64le 38/137
Verifying : libevent-2.1.12-7.fc38.ppc64le 39/137
Verifying : libffi-3.4.4-1.fc38.ppc64le 40/137
Verifying : libfsverity-1.4-8.fc38.ppc64le 41/137
Verifying : libgcrypt-1.10.1-6.fc38.ppc64le 42/137
Verifying : libgpg-error-1.46-1.fc38.ppc64le 43/137
Verifying : libidn2-2.3.4-1.fc38.ppc64le 44/137
Verifying : libksba-1.6.3-1.fc38.ppc64le 45/137
Verifying : libmodulemd-2.14.0-4.fc38.ppc64le 46/137
Verifying : libnghttp2-1.51.0-1.fc38.ppc64le 47/137
Verifying : libnsl2-2.0.0-4.fc38.ppc64le 48/137
Verifying : libpsl-0.21.1-6.fc38.ppc64le 49/137
Verifying : librepo-1.15.1-1.fc38.ppc64le 50/137
Verifying : libreport-filesystem-2.17.6-1.fc38.noarch 51/137
Verifying : libselinux-3.4-6.fc38.ppc64le 52/137
Verifying : libsemanage-3.4-6.fc38.ppc64le 53/137
Verifying : libsepol-3.4-4.fc38.ppc64le 54/137
Verifying : libsigsegv-2.14-3.fc38.ppc64le 55/137
Verifying : libsolv-0.7.22-3.fc38.ppc64le 56/137
Verifying : libssh-0.10.4-2.fc38.ppc64le 57/137
Verifying : libssh-config-0.10.4-2.fc38.noarch 58/137
Verifying : libtasn1-4.19.0-1.fc38.ppc64le 59/137
Verifying : libtirpc-1.3.3-0.fc38.ppc64le 60/137
Verifying : libunistring-1.0-2.fc38.ppc64le 61/137
Verifying : libverto-0.3.2-4.fc38.ppc64le 62/137
Verifying : libxcrypt-4.4.33-5.fc38.ppc64le 63/137
Verifying : libxml2-2.10.3-2.fc38.ppc64le 64/137
Verifying : libyaml-0.2.5-8.fc38.ppc64le 65/137
Verifying : lua-libs-5.4.4-6.fc38.ppc64le 66/137
Verifying : lz4-libs-1.9.3-5.fc38.ppc64le 67/137
Verifying : mpdecimal-2.5.1-4.fc38.ppc64le 68/137
Verifying : mpfr-4.1.1-2.fc38.ppc64le 69/137
Verifying : ncurses-base-6.3-5.20221126.fc38.noarch 70/137
Verifying : ncurses-libs-6.3-5.20221126.fc38.ppc64le 71/137
Verifying : nettle-3.8-2.fc38.ppc64le 72/137
Verifying : npth-1.6-10.fc38.ppc64le 73/137
Verifying : openldap-2.6.3-1.fc38.ppc64le 74/137
Verifying : openssl-libs-1:3.0.5-6.fc38.ppc64le 75/137
Verifying : p11-kit-0.24.1-5.fc38.ppc64le 76/137
Verifying : p11-kit-trust-0.24.1-5.fc38.ppc64le 77/137
Verifying : pcre2-10.40-1.fc38.1.ppc64le 78/137
Verifying : pcre2-syntax-10.40-1.fc38.1.noarch 79/137
Verifying : popt-1.19-1.fc38.ppc64le 80/137
Verifying : python3-dbus-1.3.2-1.fc38.ppc64le 81/137
Verifying : python3-gpg-1.17.1-3.fc38.ppc64le 82/137
Verifying : python3-hawkey-0.68.0-1.fc38.ppc64le 83/137
Verifying : python3-libcomps-0.1.18-4.fc38.ppc64le 84/137
Verifying : python3-libdnf-0.68.0-1.fc38.ppc64le 85/137
Verifying : libgcc-13.0.0-0.4.fc38.ppc64le 86/137
Verifying : libgomp-13.0.0-0.4.fc38.ppc64le 87/137
Verifying : libstdc++-13.0.0-0.4.fc38.ppc64le 88/137
Verifying : audit-libs-3.0.9-2.fc38.ppc64le 89/137
Verifying : basesystem-11-14.fc37.noarch 90/137
Verifying : ca-certificates-2022.2.54-5.fc37.noarch 91/137
Verifying : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 92/137
Verifying : dnf-4.14.0-1.fc38.noarch 93/137
Verifying : dnf-data-4.14.0-1.fc38.noarch 94/137
Verifying : dnf-plugins-core-4.3.1-1.fc38.noarch 95/137
Verifying : fedora-gpg-keys-38-0.3.noarch 96/137
Verifying : fedora-release-38-0.6.noarch 97/137
Verifying : fedora-release-common-38-0.6.noarch 98/137
Verifying : fedora-release-identity-basic-38-0.6.noarch 99/137
Verifying : fedora-repos-38-0.3.noarch 100/137
Verifying : fedora-repos-rawhide-38-0.3.noarch 101/137
Verifying : filesystem-3.18-2.fc37.ppc64le 102/137
Verifying : glibc-2.36.9000-19.fc38.ppc64le 103/137
Verifying : glibc-common-2.36.9000-19.fc38.ppc64le 104/137
Verifying : glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le 105/137
Verifying : libblkid-2.38.1-3.fc38.ppc64le 106/137
Verifying : libmount-2.38.1-3.fc38.ppc64le 107/137
Verifying : libsmartcols-2.38.1-3.fc38.ppc64le 108/137
Verifying : libuuid-2.38.1-3.fc38.ppc64le 109/137
Verifying : libzstd-1.5.2-3.fc37.ppc64le 110/137
Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 111/137
Verifying : python-pip-wheel-22.3.1-1.fc38.noarch 112/137
Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 113/137
Verifying : python3-3.11.1-1.fc38.ppc64le 114/137
Verifying : python3-dateutil-1:2.8.2-4.fc37.noarch 115/137
Verifying : python3-distro-1.8.0-1.fc38.noarch 116/137
Verifying : python3-dnf-4.14.0-1.fc38.noarch 117/137
Verifying : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 118/137
Verifying : python3-libs-3.11.1-1.fc38.ppc64le 119/137
Verifying : python3-rpm-4.18.0-8.fc38.ppc64le 120/137
Verifying : python3-six-1.16.0-8.fc37.noarch 121/137
Verifying : readline-8.2-2.fc38.ppc64le 122/137
Verifying : rpm-4.18.0-8.fc38.ppc64le 123/137
Verifying : rpm-build-libs-4.18.0-8.fc38.ppc64le 124/137
Verifying : rpm-libs-4.18.0-8.fc38.ppc64le 125/137
Verifying : rpm-sequoia-1.2.0-1.fc38.ppc64le 126/137
Verifying : rpm-sign-libs-4.18.0-8.fc38.ppc64le 127/137
Verifying : sed-4.8-11.fc37.ppc64le 128/137
Verifying : setup-2.14.3-1.fc38.noarch 129/137
Verifying : shadow-utils-2:4.13-3.fc38.ppc64le 130/137
Verifying : sqlite-libs-3.40.0-1.fc38.ppc64le 131/137
Verifying : systemd-libs-252.4-598.fc38.ppc64le 132/137
Verifying : tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le 133/137
Verifying : tzdata-2022g-1.fc38.noarch 134/137
Verifying : xz-libs-5.2.9-1.fc38.ppc64le 135/137
Verifying : zchunk-libs-1.2.3-1.fc38.ppc64le 136/137
Verifying : zlib-1.2.13-1.fc38.ppc64le 137/137
Installed products updated.
Installed:
alternatives-1.21-1.fc38.ppc64le
audit-libs-3.0.9-2.fc38.ppc64le
basesystem-11-14.fc37.noarch
bash-5.2.9-3.fc38.ppc64le
bzip2-libs-1.0.8-12.fc38.ppc64le
ca-certificates-2022.2.54-5.fc37.noarch
coreutils-9.1-8.fc38.ppc64le
coreutils-common-9.1-8.fc38.ppc64le
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
curl-7.87.0-1.fc38.ppc64le
cyrus-sasl-lib-2.1.28-8.fc38.ppc64le
dbus-libs-1:1.14.4-1.fc38.ppc64le
dnf-4.14.0-1.fc38.noarch
dnf-data-4.14.0-1.fc38.noarch
dnf-plugins-core-4.3.1-1.fc38.noarch
elfutils-default-yama-scope-0.188-3.fc38.noarch
elfutils-libelf-0.188-3.fc38.ppc64le
elfutils-libs-0.188-3.fc38.ppc64le
expat-2.5.0-1.fc38.ppc64le
fedora-gpg-keys-38-0.3.noarch
fedora-release-38-0.6.noarch
fedora-release-common-38-0.6.noarch
fedora-release-identity-basic-38-0.6.noarch
fedora-repos-38-0.3.noarch
fedora-repos-rawhide-38-0.3.noarch
file-libs-5.42-4.fc38.ppc64le
filesystem-3.18-2.fc37.ppc64le
findutils-1:4.9.0-2.fc38.ppc64le
gawk-5.1.1-4.fc38.ppc64le
gdbm-libs-1:1.23-2.fc38.ppc64le
glib2-2.74.1-2.fc38.ppc64le
glibc-2.36.9000-19.fc38.ppc64le
glibc-common-2.36.9000-19.fc38.ppc64le
glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le
gmp-1:6.2.1-3.fc38.ppc64le
gnupg2-2.3.8-1.fc38.ppc64le
gnutls-3.7.8-9.fc38.ppc64le
gpgme-1.17.1-3.fc38.ppc64le
grep-3.8-1.fc38.ppc64le
ima-evm-utils-1.4-6.fc38.ppc64le
json-c-0.16-3.fc38.ppc64le
keyutils-libs-1.6.1-5.fc38.ppc64le
krb5-libs-1.20.1-3.fc38.ppc64le
libacl-2.3.1-4.fc38.ppc64le
libarchive-3.6.1-3.fc38.ppc64le
libassuan-2.5.5-5.fc38.ppc64le
libattr-2.5.1-5.fc38.ppc64le
libb2-0.98.1-7.fc38.ppc64le
libblkid-2.38.1-3.fc38.ppc64le
libbrotli-1.0.9-9.fc38.ppc64le
libcap-2.48-5.fc38.ppc64le
libcap-ng-0.8.3-4.fc38.ppc64le
libcom_err-1.46.5-3.fc38.ppc64le
libcomps-0.1.18-4.fc38.ppc64le
libcurl-7.87.0-1.fc38.ppc64le
libdnf-0.68.0-1.fc38.ppc64le
libevent-2.1.12-7.fc38.ppc64le
libffi-3.4.4-1.fc38.ppc64le
libfsverity-1.4-8.fc38.ppc64le
libgcc-13.0.0-0.4.fc38.ppc64le
libgcrypt-1.10.1-6.fc38.ppc64le
libgomp-13.0.0-0.4.fc38.ppc64le
libgpg-error-1.46-1.fc38.ppc64le
libidn2-2.3.4-1.fc38.ppc64le
libksba-1.6.3-1.fc38.ppc64le
libmodulemd-2.14.0-4.fc38.ppc64le
libmount-2.38.1-3.fc38.ppc64le
libnghttp2-1.51.0-1.fc38.ppc64le
libnsl2-2.0.0-4.fc38.ppc64le
libpsl-0.21.1-6.fc38.ppc64le
librepo-1.15.1-1.fc38.ppc64le
libreport-filesystem-2.17.6-1.fc38.noarch
libselinux-3.4-6.fc38.ppc64le
libsemanage-3.4-6.fc38.ppc64le
libsepol-3.4-4.fc38.ppc64le
libsigsegv-2.14-3.fc38.ppc64le
libsmartcols-2.38.1-3.fc38.ppc64le
libsolv-0.7.22-3.fc38.ppc64le
libssh-0.10.4-2.fc38.ppc64le
libssh-config-0.10.4-2.fc38.noarch
libstdc++-13.0.0-0.4.fc38.ppc64le
libtasn1-4.19.0-1.fc38.ppc64le
libtirpc-1.3.3-0.fc38.ppc64le
libunistring-1.0-2.fc38.ppc64le
libuuid-2.38.1-3.fc38.ppc64le
libverto-0.3.2-4.fc38.ppc64le
libxcrypt-4.4.33-5.fc38.ppc64le
libxml2-2.10.3-2.fc38.ppc64le
libyaml-0.2.5-8.fc38.ppc64le
libzstd-1.5.2-3.fc37.ppc64le
lua-libs-5.4.4-6.fc38.ppc64le
lz4-libs-1.9.3-5.fc38.ppc64le
mpdecimal-2.5.1-4.fc38.ppc64le
mpfr-4.1.1-2.fc38.ppc64le
ncurses-base-6.3-5.20221126.fc38.noarch
ncurses-libs-6.3-5.20221126.fc38.ppc64le
nettle-3.8-2.fc38.ppc64le
npth-1.6-10.fc38.ppc64le
openldap-2.6.3-1.fc38.ppc64le
openssl-libs-1:3.0.5-6.fc38.ppc64le
p11-kit-0.24.1-5.fc38.ppc64le
p11-kit-trust-0.24.1-5.fc38.ppc64le
pcre2-10.40-1.fc38.1.ppc64le
pcre2-syntax-10.40-1.fc38.1.noarch
popt-1.19-1.fc38.ppc64le
publicsuffix-list-dafsa-20221208-1.fc38.noarch
python-pip-wheel-22.3.1-1.fc38.noarch
python-setuptools-wheel-65.5.1-1.fc38.noarch
python3-3.11.1-1.fc38.ppc64le
python3-dateutil-1:2.8.2-4.fc37.noarch
python3-dbus-1.3.2-1.fc38.ppc64le
python3-distro-1.8.0-1.fc38.noarch
python3-dnf-4.14.0-1.fc38.noarch
python3-dnf-plugins-core-4.3.1-1.fc38.noarch
python3-gpg-1.17.1-3.fc38.ppc64le
python3-hawkey-0.68.0-1.fc38.ppc64le
python3-libcomps-0.1.18-4.fc38.ppc64le
python3-libdnf-0.68.0-1.fc38.ppc64le
python3-libs-3.11.1-1.fc38.ppc64le
python3-rpm-4.18.0-8.fc38.ppc64le
python3-six-1.16.0-8.fc37.noarch
readline-8.2-2.fc38.ppc64le
rpm-4.18.0-8.fc38.ppc64le
rpm-build-libs-4.18.0-8.fc38.ppc64le
rpm-libs-4.18.0-8.fc38.ppc64le
rpm-sequoia-1.2.0-1.fc38.ppc64le
rpm-sign-libs-4.18.0-8.fc38.ppc64le
sed-4.8-11.fc37.ppc64le
setup-2.14.3-1.fc38.noarch
shadow-utils-2:4.13-3.fc38.ppc64le
sqlite-libs-3.40.0-1.fc38.ppc64le
systemd-libs-252.4-598.fc38.ppc64le
tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le
tzdata-2022g-1.fc38.noarch
xz-libs-5.2.9-1.fc38.ppc64le
zchunk-libs-1.2.3-1.fc38.ppc64le
zlib-1.2.13-1.fc38.ppc64le
Complete!
Finish(bootstrap): dnf install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1672073286.329146/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 8.8 kB/s | 3.0 kB 00:00
Copr repository 31 MB/s | 32 MB 00:01
Additional repo https_jakub_fedorapeople_org_fe 9.4 kB/s | 3.0 kB 00:00
fedora 51 kB/s | 6.7 kB 00:00
Dependencies resolved.
==========================================================================================================================
Package Arch Version Repository Size
==========================================================================================================================
Installing group/module packages:
bash ppc64le 5.2.9-3.fc38 copr_base 1.9 M
bzip2 ppc64le 1.0.8-12.fc38 copr_base 54 k
coreutils ppc64le 9.1-8.fc38 copr_base 1.3 M
cpio ppc64le 2.13-13.fc38 copr_base 277 k
diffutils ppc64le 3.8-3.fc38 copr_base 381 k
fedora-release-common noarch 38-0.6 fedora 21 k
findutils ppc64le 1:4.9.0-2.fc38 copr_base 530 k
gawk ppc64le 5.1.1-4.fc38 copr_base 1.0 M
glibc-minimal-langpack ppc64le 2.36.9000-19.fc38 fedora 30 k
grep ppc64le 3.8-1.fc38 copr_base 293 k
gzip ppc64le 1.12-2.fc38 copr_base 163 k
info ppc64le 7.0.1-1.fc38 fedora 199 k
patch ppc64le 2.7.6-17.fc38 copr_base 136 k
redhat-rpm-config noarch 235-1.fc38 fedora 80 k
rpm-build ppc64le 4.18.0-8.fc38 fedora 78 k
sed ppc64le 4.8-11.fc37 fedora 313 k
shadow-utils ppc64le 2:4.13-3.fc38 fedora 1.3 M
tar ppc64le 2:1.34-5.fc38 fedora 914 k
unzip ppc64le 6.0-58.fc38 fedora 188 k
util-linux ppc64le 2.38.1-3.fc38 fedora 2.4 M
which ppc64le 2.21-36.fc38 fedora 42 k
xz ppc64le 5.2.9-1.fc38 fedora 310 k
Installing dependencies:
alternatives ppc64le 1.21-1.fc38 copr_base 41 k
ansible-srpm-macros noarch 1-8.1.fc38 fedora 8.6 k
audit-libs ppc64le 3.0.9-2.fc38 fedora 130 k
authselect ppc64le 1.4.2-1.fc38 copr_base 141 k
authselect-libs ppc64le 1.4.2-1.fc38 copr_base 241 k
basesystem noarch 11-14.fc37 fedora 7.0 k
binutils ppc64le 2.39-6.fc38 copr_base 6.2 M
binutils-gold ppc64le 2.39-6.fc38 copr_base 1.1 M
bzip2-libs ppc64le 1.0.8-12.fc38 copr_base 48 k
ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k
coreutils-common ppc64le 9.1-8.fc38 copr_base 2.0 M
cracklib ppc64le 2.9.7-30.fc38 copr_base 84 k
crypto-policies noarch 20221215-1.gita4c31a3.fc38 fedora 90 k
curl ppc64le 7.87.0-1.fc38 copr_base 348 k
cyrus-sasl-lib ppc64le 2.1.28-8.fc38 copr_base 882 k
debugedit ppc64le 5.0-5.fc37 fedora 80 k
dwz ppc64le 0.15-1.fc38 copr_base 143 k
ed ppc64le 1.18-2.fc38 copr_base 82 k
efi-srpm-macros noarch 5-6.fc37 fedora 22 k
elfutils ppc64le 0.188-3.fc38 copr_base 555 k
elfutils-debuginfod-client ppc64le 0.188-3.fc38 copr_base 42 k
elfutils-default-yama-scope noarch 0.188-3.fc38 copr_base 16 k
elfutils-libelf ppc64le 0.188-3.fc38 copr_base 205 k
elfutils-libs ppc64le 0.188-3.fc38 copr_base 291 k
fedora-gpg-keys noarch 38-0.3 fedora 125 k
fedora-release noarch 38-0.6 fedora 11 k
fedora-release-identity-basic noarch 38-0.6 fedora 11 k
fedora-repos noarch 38-0.3 fedora 10 k
fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k
file ppc64le 5.42-4.fc38 copr_base 50 k
file-libs ppc64le 5.42-4.fc38 copr_base 688 k
filesystem ppc64le 3.18-2.fc37 fedora 1.1 M
fonts-srpm-macros noarch 1:2.0.5-10.fc38 fedora 26 k
fpc-srpm-macros noarch 1.3-6.fc37 fedora 7.7 k
gdb-minimal ppc64le 12.1-10.fc38 fedora 3.7 M
gdbm-libs ppc64le 1:1.23-2.fc38 copr_base 62 k
ghc-srpm-macros noarch 1.5.0-7.fc37 fedora 7.8 k
glibc ppc64le 2.36.9000-19.fc38 fedora 2.2 M
glibc-common ppc64le 2.36.9000-19.fc38 fedora 322 k
glibc-gconv-extra ppc64le 2.36.9000-19.fc38 fedora 1.9 M
gmp ppc64le 1:6.2.1-3.fc38 copr_base 304 k
gnat-srpm-macros noarch 4-16.fc37 fedora 8.3 k
go-srpm-macros noarch 3.2.0-1.fc38 fedora 27 k
jansson ppc64le 2.13.1-5.fc38 copr_base 50 k
kernel-srpm-macros noarch 1.0-15.fc37 fedora 9.4 k
keyutils-libs ppc64le 1.6.1-5.fc38 copr_base 33 k
krb5-libs ppc64le 1.20.1-3.fc38 copr_base 805 k
libacl ppc64le 2.3.1-4.fc38 copr_base 26 k
libarchive ppc64le 3.6.1-3.fc38 copr_base 464 k
libattr ppc64le 2.5.1-5.fc38 copr_base 19 k
libblkid ppc64le 2.38.1-3.fc38 fedora 122 k
libbrotli ppc64le 1.0.9-9.fc38 copr_base 345 k
libcap ppc64le 2.48-5.fc38 copr_base 73 k
libcap-ng ppc64le 0.8.3-4.fc38 copr_base 34 k
libcom_err ppc64le 1.46.5-3.fc38 copr_base 26 k
libcurl ppc64le 7.87.0-1.fc38 copr_base 334 k
libdb ppc64le 5.3.28-54.fc38 copr_base 842 k
libeconf ppc64le 0.4.0-4.fc38 copr_base 31 k
libevent ppc64le 2.1.12-7.fc38 copr_base 276 k
libfdisk ppc64le 2.38.1-3.fc38 fedora 176 k
libffi ppc64le 3.4.4-1.fc38 copr_base 39 k
libgcc ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 88 k
libgomp ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 314 k
libidn2 ppc64le 2.3.4-1.fc38 copr_base 157 k
libmount ppc64le 2.38.1-3.fc38 fedora 154 k
libnghttp2 ppc64le 1.51.0-1.fc38 copr_base 85 k
libnsl2 ppc64le 2.0.0-4.fc38 copr_base 33 k
libpkgconf ppc64le 1.8.0-3.fc38 copr_base 40 k
libpsl ppc64le 0.21.1-6.fc38 copr_base 67 k
libpwquality ppc64le 1.4.5-1.fc38 fedora 122 k
librtas ppc64le 2.0.3-1.fc38 copr_base 68 k
libselinux ppc64le 3.4-6.fc38 copr_base 100 k
libsemanage ppc64le 3.4-6.fc38 copr_base 131 k
libsepol ppc64le 3.4-4.fc38 copr_base 355 k
libsigsegv ppc64le 2.14-3.fc38 copr_base 28 k
libsmartcols ppc64le 2.38.1-3.fc38 fedora 70 k
libssh ppc64le 0.10.4-2.fc38 copr_base 236 k
libssh-config noarch 0.10.4-2.fc38 copr_base 9.2 k
libstdc++ ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 932 k
libtasn1 ppc64le 4.19.0-1.fc38 copr_base 81 k
libtirpc ppc64le 1.3.3-0.fc38 copr_base 108 k
libunistring ppc64le 1.0-2.fc38 copr_base 575 k
libutempter ppc64le 1.2.1-7.fc38 copr_base 27 k
libuuid ppc64le 2.38.1-3.fc38 fedora 29 k
libverto ppc64le 0.3.2-4.fc38 copr_base 23 k
libxcrypt ppc64le 4.4.33-5.fc38 copr_base 133 k
libxml2 ppc64le 2.10.3-2.fc38 copr_base 780 k
libzstd ppc64le 1.5.2-3.fc37 fedora 316 k
lua-libs ppc64le 5.4.4-6.fc38 copr_base 149 k
lua-srpm-macros noarch 1-7.fc37 fedora 8.8 k
lz4-libs ppc64le 1.9.3-5.fc38 copr_base 90 k
mpfr ppc64le 4.1.1-2.fc38 copr_base 609 k
ncurses-base noarch 6.3-5.20221126.fc38 copr_base 62 k
ncurses-libs ppc64le 6.3-5.20221126.fc38 copr_base 374 k
nettle ppc64le 3.8-2.fc38 copr_base 443 k
nim-srpm-macros noarch 3-7.fc37 fedora 8.4 k
ocaml-srpm-macros noarch 7-2.fc37 fedora 13 k
openblas-srpm-macros noarch 2-12.fc37 fedora 7.5 k
openldap ppc64le 2.6.3-1.fc38 copr_base 288 k
openssl-libs ppc64le 1:3.0.5-6.fc38 copr_base 2.2 M
p11-kit ppc64le 0.24.1-5.fc38 copr_base 359 k
p11-kit-trust ppc64le 0.24.1-5.fc38 copr_base 150 k
package-notes-srpm-macros noarch 0.5-6.fc38 fedora 11 k
pam ppc64le 1.5.2-15.fc38 copr_base 569 k
pam-libs ppc64le 1.5.2-15.fc38 copr_base 64 k
pcre2 ppc64le 10.40-1.fc38.1 copr_base 242 k
pcre2-syntax noarch 10.40-1.fc38.1 copr_base 143 k
perl-srpm-macros noarch 1-47.fc38 fedora 8.2 k
pkgconf ppc64le 1.8.0-3.fc38 copr_base 43 k
pkgconf-m4 noarch 1.8.0-3.fc38 copr_base 15 k
pkgconf-pkg-config ppc64le 1.8.0-3.fc38 copr_base 11 k
popt ppc64le 1.19-1.fc38 copr_base 64 k
publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k
python-srpm-macros noarch 3.11-6.fc38 fedora 25 k
qt5-srpm-macros noarch 5.15.7-1.fc38 fedora 7.9 k
readline ppc64le 8.2-2.fc38 fedora 228 k
rpm ppc64le 4.18.0-8.fc38 fedora 568 k
rpm-build-libs ppc64le 4.18.0-8.fc38 fedora 103 k
rpm-libs ppc64le 4.18.0-8.fc38 fedora 355 k
rpm-sequoia ppc64le 1.2.0-1.fc38 fedora 1.4 M
rpmautospec-rpm-macros noarch 0.3.1-1.fc38 fedora 8.8 k
rust-srpm-macros noarch 23-1.fc38 fedora 9.4 k
setup noarch 2.14.3-1.fc38 fedora 152 k
sqlite-libs ppc64le 3.40.0-1.fc38 fedora 776 k
systemd-libs ppc64le 252.4-598.fc38 fedora 666 k
tzdata noarch 2022g-1.fc38 fedora 716 k
util-linux-core ppc64le 2.38.1-3.fc38 fedora 515 k
xxhash-libs ppc64le 0.8.1-3.fc37 fedora 38 k
xz-libs ppc64le 5.2.9-1.fc38 fedora 104 k
zip ppc64le 3.0-35.fc38 fedora 267 k
zlib ppc64le 1.2.13-1.fc38 fedora 100 k
zstd ppc64le 1.5.2-3.fc37 fedora 466 k
Installing Groups:
Buildsystem building group
Transaction Summary
==========================================================================================================================
Install 154 Packages
Total size: 57 M
Installed size: 328 M
Downloading Packages:
[SKIPPED] alternatives-1.21-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] authselect-1.4.2-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] authselect-libs-1.4.2-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] bash-5.2.9-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] binutils-2.39-6.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] binutils-gold-2.39-6.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] bzip2-1.0.8-12.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] bzip2-libs-1.0.8-12.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] coreutils-9.1-8.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] coreutils-common-9.1-8.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] cpio-2.13-13.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] cracklib-2.9.7-30.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] curl-7.87.0-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] cyrus-sasl-lib-2.1.28-8.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] diffutils-3.8-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] dwz-0.15-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] ed-1.18-2.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] elfutils-0.188-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] elfutils-debuginfod-client-0.188-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] elfutils-default-yama-scope-0.188-3.fc38.noarch.rpm: Already downloaded
[SKIPPED] elfutils-libelf-0.188-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] elfutils-libs-0.188-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] file-5.42-4.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] file-libs-5.42-4.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] findutils-4.9.0-2.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] gawk-5.1.1-4.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] gdbm-libs-1.23-2.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] gmp-6.2.1-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] grep-3.8-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] gzip-1.12-2.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] jansson-2.13.1-5.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] keyutils-libs-1.6.1-5.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] krb5-libs-1.20.1-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libacl-2.3.1-4.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libarchive-3.6.1-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libattr-2.5.1-5.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libbrotli-1.0.9-9.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libcap-2.48-5.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libcap-ng-0.8.3-4.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libcom_err-1.46.5-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libcurl-7.87.0-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libdb-5.3.28-54.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libeconf-0.4.0-4.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libevent-2.1.12-7.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libffi-3.4.4-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libidn2-2.3.4-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libnghttp2-1.51.0-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libnsl2-2.0.0-4.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libpkgconf-1.8.0-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libpsl-0.21.1-6.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] librtas-2.0.3-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libselinux-3.4-6.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libsemanage-3.4-6.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libsepol-3.4-4.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libsigsegv-2.14-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libssh-0.10.4-2.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libssh-config-0.10.4-2.fc38.noarch.rpm: Already downloaded
[SKIPPED] libtasn1-4.19.0-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libtirpc-1.3.3-0.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libunistring-1.0-2.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libutempter-1.2.1-7.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libverto-0.3.2-4.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libxcrypt-4.4.33-5.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libxml2-2.10.3-2.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] lua-libs-5.4.4-6.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] lz4-libs-1.9.3-5.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] mpfr-4.1.1-2.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] ncurses-base-6.3-5.20221126.fc38.noarch.rpm: Already downloaded
[SKIPPED] ncurses-libs-6.3-5.20221126.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] nettle-3.8-2.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] openldap-2.6.3-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] openssl-libs-3.0.5-6.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] p11-kit-0.24.1-5.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] p11-kit-trust-0.24.1-5.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] pam-1.5.2-15.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] pam-libs-1.5.2-15.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] patch-2.7.6-17.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] pcre2-10.40-1.fc38.1.ppc64le.rpm: Already downloaded
[SKIPPED] pcre2-syntax-10.40-1.fc38.1.noarch.rpm: Already downloaded
[SKIPPED] pkgconf-1.8.0-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] pkgconf-m4-1.8.0-3.fc38.noarch.rpm: Already downloaded
[SKIPPED] pkgconf-pkg-config-1.8.0-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] popt-1.19-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libgcc-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libgomp-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libstdc++-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] ansible-srpm-macros-1-8.1.fc38.noarch.rpm: Already downloaded
[SKIPPED] audit-libs-3.0.9-2.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded
[SKIPPED] ca-certificates-2022.2.54-5.fc37.noarch.rpm: Already downloaded
[SKIPPED] crypto-policies-20221215-1.gita4c31a3.fc38.noarch.rpm: Already downloaded
[SKIPPED] debugedit-5.0-5.fc37.ppc64le.rpm: Already downloaded
[SKIPPED] efi-srpm-macros-5-6.fc37.noarch.rpm: Already downloaded
[SKIPPED] fedora-gpg-keys-38-0.3.noarch.rpm: Already downloaded
[SKIPPED] fedora-release-38-0.6.noarch.rpm: Already downloaded
[SKIPPED] fedora-release-common-38-0.6.noarch.rpm: Already downloaded
[SKIPPED] fedora-release-identity-basic-38-0.6.noarch.rpm: Already downloaded
[SKIPPED] fedora-repos-38-0.3.noarch.rpm: Already downloaded
[SKIPPED] fedora-repos-rawhide-38-0.3.noarch.rpm: Already downloaded
[SKIPPED] filesystem-3.18-2.fc37.ppc64le.rpm: Already downloaded
[SKIPPED] fonts-srpm-macros-2.0.5-10.fc38.noarch.rpm: Already downloaded
[SKIPPED] fpc-srpm-macros-1.3-6.fc37.noarch.rpm: Already downloaded
[SKIPPED] gdb-minimal-12.1-10.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] ghc-srpm-macros-1.5.0-7.fc37.noarch.rpm: Already downloaded
[SKIPPED] glibc-2.36.9000-19.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] glibc-common-2.36.9000-19.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] glibc-gconv-extra-2.36.9000-19.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] gnat-srpm-macros-4-16.fc37.noarch.rpm: Already downloaded
[SKIPPED] go-srpm-macros-3.2.0-1.fc38.noarch.rpm: Already downloaded
[SKIPPED] info-7.0.1-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] kernel-srpm-macros-1.0-15.fc37.noarch.rpm: Already downloaded
[SKIPPED] libblkid-2.38.1-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libfdisk-2.38.1-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libmount-2.38.1-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libpwquality-1.4.5-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libsmartcols-2.38.1-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libuuid-2.38.1-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libzstd-1.5.2-3.fc37.ppc64le.rpm: Already downloaded
[SKIPPED] lua-srpm-macros-1-7.fc37.noarch.rpm: Already downloaded
[SKIPPED] nim-srpm-macros-3-7.fc37.noarch.rpm: Already downloaded
[SKIPPED] ocaml-srpm-macros-7-2.fc37.noarch.rpm: Already downloaded
[SKIPPED] openblas-srpm-macros-2-12.fc37.noarch.rpm: Already downloaded
[SKIPPED] package-notes-srpm-macros-0.5-6.fc38.noarch.rpm: Already downloaded
[SKIPPED] perl-srpm-macros-1-47.fc38.noarch.rpm: Already downloaded
[SKIPPED] publicsuffix-list-dafsa-20221208-1.fc38.noarch.rpm: Already downloaded
[SKIPPED] python-srpm-macros-3.11-6.fc38.noarch.rpm: Already downloaded
[SKIPPED] qt5-srpm-macros-5.15.7-1.fc38.noarch.rpm: Already downloaded
[SKIPPED] readline-8.2-2.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] redhat-rpm-config-235-1.fc38.noarch.rpm: Already downloaded
[SKIPPED] rpm-4.18.0-8.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] rpm-build-4.18.0-8.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] rpm-build-libs-4.18.0-8.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] rpm-libs-4.18.0-8.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] rpm-sequoia-1.2.0-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] rpmautospec-rpm-macros-0.3.1-1.fc38.noarch.rpm: Already downloaded
[SKIPPED] rust-srpm-macros-23-1.fc38.noarch.rpm: Already downloaded
[SKIPPED] sed-4.8-11.fc37.ppc64le.rpm: Already downloaded
[SKIPPED] setup-2.14.3-1.fc38.noarch.rpm: Already downloaded
[SKIPPED] shadow-utils-4.13-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] sqlite-libs-3.40.0-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] systemd-libs-252.4-598.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] tar-1.34-5.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] tzdata-2022g-1.fc38.noarch.rpm: Already downloaded
[SKIPPED] unzip-6.0-58.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] util-linux-2.38.1-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] util-linux-core-2.38.1-3.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] which-2.21-36.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] xxhash-libs-0.8.1-3.fc37.ppc64le.rpm: Already downloaded
[SKIPPED] xz-5.2.9-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] xz-libs-5.2.9-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] zip-3.0-35.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] zlib-1.2.13-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] zstd-1.5.2-3.fc37.ppc64le.rpm: Already downloaded
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0xEB10B464:
Userid : "Fedora (38) <fedora-38-primary@fedoraproject.org>"
Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary
Key imported successfully
fedora 1.6 MB/s | 1.6 kB 00:00
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x5323552A:
Userid : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Running scriptlet: filesystem-3.18-2.fc37.ppc64le 1/1
Preparing : 1/1
Installing : libgcc-13.0.0-0.4.fc38.ppc64le 1/154
Running scriptlet: libgcc-13.0.0-0.4.fc38.ppc64le 1/154
Installing : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/154
Running scriptlet: crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/154
Installing : fedora-release-identity-basic-38-0.6.noarch 3/154
Installing : tzdata-2022g-1.fc38.noarch 4/154
Installing : rust-srpm-macros-23-1.fc38.noarch 5/154
Installing : qt5-srpm-macros-5.15.7-1.fc38.noarch 6/154
Installing : publicsuffix-list-dafsa-20221208-1.fc38.noarch 7/154
Installing : perl-srpm-macros-1-47.fc38.noarch 8/154
Installing : package-notes-srpm-macros-0.5-6.fc38.noarch 9/154
Installing : openblas-srpm-macros-2-12.fc37.noarch 10/154
Installing : ocaml-srpm-macros-7-2.fc37.noarch 11/154
Installing : nim-srpm-macros-3-7.fc37.noarch 12/154
Installing : kernel-srpm-macros-1.0-15.fc37.noarch 13/154
Installing : gnat-srpm-macros-4-16.fc37.noarch 14/154
Installing : ghc-srpm-macros-1.5.0-7.fc37.noarch 15/154
Installing : fpc-srpm-macros-1.3-6.fc37.noarch 16/154
Installing : fedora-gpg-keys-38-0.3.noarch 17/154
Installing : fedora-release-38-0.6.noarch 18/154
Installing : fedora-release-common-38-0.6.noarch 19/154
Installing : fedora-repos-rawhide-38-0.3.noarch 20/154
Installing : fedora-repos-38-0.3.noarch 21/154
Installing : setup-2.14.3-1.fc38.noarch 22/154
warning: /etc/hosts created as /etc/hosts.rpmnew
Running scriptlet: setup-2.14.3-1.fc38.noarch 22/154
Installing : filesystem-3.18-2.fc37.ppc64le 23/154
Installing : basesystem-11-14.fc37.noarch 24/154
Installing : ansible-srpm-macros-1-8.1.fc38.noarch 25/154
Installing : pkgconf-m4-1.8.0-3.fc38.noarch 26/154
Installing : pcre2-syntax-10.40-1.fc38.1.noarch 27/154
Installing : ncurses-base-6.3-5.20221126.fc38.noarch 28/154
Installing : ncurses-libs-6.3-5.20221126.fc38.ppc64le 29/154
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Installing : info-7.0.1-1.fc38.ppc64le 154/154
Running scriptlet: filesystem-3.18-2.fc37.ppc64le 154/154
Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 154/154
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Running scriptlet: rpm-4.18.0-8.fc38.ppc64le 154/154
Running scriptlet: info-7.0.1-1.fc38.ppc64le 154/154
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Verifying : authselect-1.4.2-1.fc38.ppc64le 2/154
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Verifying : cracklib-2.9.7-30.fc38.ppc64le 12/154
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Installed:
alternatives-1.21-1.fc38.ppc64le
ansible-srpm-macros-1-8.1.fc38.noarch
audit-libs-3.0.9-2.fc38.ppc64le
authselect-1.4.2-1.fc38.ppc64le
authselect-libs-1.4.2-1.fc38.ppc64le
basesystem-11-14.fc37.noarch
bash-5.2.9-3.fc38.ppc64le
binutils-2.39-6.fc38.ppc64le
binutils-gold-2.39-6.fc38.ppc64le
bzip2-1.0.8-12.fc38.ppc64le
bzip2-libs-1.0.8-12.fc38.ppc64le
ca-certificates-2022.2.54-5.fc37.noarch
coreutils-9.1-8.fc38.ppc64le
coreutils-common-9.1-8.fc38.ppc64le
cpio-2.13-13.fc38.ppc64le
cracklib-2.9.7-30.fc38.ppc64le
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
curl-7.87.0-1.fc38.ppc64le
cyrus-sasl-lib-2.1.28-8.fc38.ppc64le
debugedit-5.0-5.fc37.ppc64le
diffutils-3.8-3.fc38.ppc64le
dwz-0.15-1.fc38.ppc64le
ed-1.18-2.fc38.ppc64le
efi-srpm-macros-5-6.fc37.noarch
elfutils-0.188-3.fc38.ppc64le
elfutils-debuginfod-client-0.188-3.fc38.ppc64le
elfutils-default-yama-scope-0.188-3.fc38.noarch
elfutils-libelf-0.188-3.fc38.ppc64le
elfutils-libs-0.188-3.fc38.ppc64le
fedora-gpg-keys-38-0.3.noarch
fedora-release-38-0.6.noarch
fedora-release-common-38-0.6.noarch
fedora-release-identity-basic-38-0.6.noarch
fedora-repos-38-0.3.noarch
fedora-repos-rawhide-38-0.3.noarch
file-5.42-4.fc38.ppc64le
file-libs-5.42-4.fc38.ppc64le
filesystem-3.18-2.fc37.ppc64le
findutils-1:4.9.0-2.fc38.ppc64le
fonts-srpm-macros-1:2.0.5-10.fc38.noarch
fpc-srpm-macros-1.3-6.fc37.noarch
gawk-5.1.1-4.fc38.ppc64le
gdb-minimal-12.1-10.fc38.ppc64le
gdbm-libs-1:1.23-2.fc38.ppc64le
ghc-srpm-macros-1.5.0-7.fc37.noarch
glibc-2.36.9000-19.fc38.ppc64le
glibc-common-2.36.9000-19.fc38.ppc64le
glibc-gconv-extra-2.36.9000-19.fc38.ppc64le
glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le
gmp-1:6.2.1-3.fc38.ppc64le
gnat-srpm-macros-4-16.fc37.noarch
go-srpm-macros-3.2.0-1.fc38.noarch
grep-3.8-1.fc38.ppc64le
gzip-1.12-2.fc38.ppc64le
info-7.0.1-1.fc38.ppc64le
jansson-2.13.1-5.fc38.ppc64le
kernel-srpm-macros-1.0-15.fc37.noarch
keyutils-libs-1.6.1-5.fc38.ppc64le
krb5-libs-1.20.1-3.fc38.ppc64le
libacl-2.3.1-4.fc38.ppc64le
libarchive-3.6.1-3.fc38.ppc64le
libattr-2.5.1-5.fc38.ppc64le
libblkid-2.38.1-3.fc38.ppc64le
libbrotli-1.0.9-9.fc38.ppc64le
libcap-2.48-5.fc38.ppc64le
libcap-ng-0.8.3-4.fc38.ppc64le
libcom_err-1.46.5-3.fc38.ppc64le
libcurl-7.87.0-1.fc38.ppc64le
libdb-5.3.28-54.fc38.ppc64le
libeconf-0.4.0-4.fc38.ppc64le
libevent-2.1.12-7.fc38.ppc64le
libfdisk-2.38.1-3.fc38.ppc64le
libffi-3.4.4-1.fc38.ppc64le
libgcc-13.0.0-0.4.fc38.ppc64le
libgomp-13.0.0-0.4.fc38.ppc64le
libidn2-2.3.4-1.fc38.ppc64le
libmount-2.38.1-3.fc38.ppc64le
libnghttp2-1.51.0-1.fc38.ppc64le
libnsl2-2.0.0-4.fc38.ppc64le
libpkgconf-1.8.0-3.fc38.ppc64le
libpsl-0.21.1-6.fc38.ppc64le
libpwquality-1.4.5-1.fc38.ppc64le
librtas-2.0.3-1.fc38.ppc64le
libselinux-3.4-6.fc38.ppc64le
libsemanage-3.4-6.fc38.ppc64le
libsepol-3.4-4.fc38.ppc64le
libsigsegv-2.14-3.fc38.ppc64le
libsmartcols-2.38.1-3.fc38.ppc64le
libssh-0.10.4-2.fc38.ppc64le
libssh-config-0.10.4-2.fc38.noarch
libstdc++-13.0.0-0.4.fc38.ppc64le
libtasn1-4.19.0-1.fc38.ppc64le
libtirpc-1.3.3-0.fc38.ppc64le
libunistring-1.0-2.fc38.ppc64le
libutempter-1.2.1-7.fc38.ppc64le
libuuid-2.38.1-3.fc38.ppc64le
libverto-0.3.2-4.fc38.ppc64le
libxcrypt-4.4.33-5.fc38.ppc64le
libxml2-2.10.3-2.fc38.ppc64le
libzstd-1.5.2-3.fc37.ppc64le
lua-libs-5.4.4-6.fc38.ppc64le
lua-srpm-macros-1-7.fc37.noarch
lz4-libs-1.9.3-5.fc38.ppc64le
mpfr-4.1.1-2.fc38.ppc64le
ncurses-base-6.3-5.20221126.fc38.noarch
ncurses-libs-6.3-5.20221126.fc38.ppc64le
nettle-3.8-2.fc38.ppc64le
nim-srpm-macros-3-7.fc37.noarch
ocaml-srpm-macros-7-2.fc37.noarch
openblas-srpm-macros-2-12.fc37.noarch
openldap-2.6.3-1.fc38.ppc64le
openssl-libs-1:3.0.5-6.fc38.ppc64le
p11-kit-0.24.1-5.fc38.ppc64le
p11-kit-trust-0.24.1-5.fc38.ppc64le
package-notes-srpm-macros-0.5-6.fc38.noarch
pam-1.5.2-15.fc38.ppc64le
pam-libs-1.5.2-15.fc38.ppc64le
patch-2.7.6-17.fc38.ppc64le
pcre2-10.40-1.fc38.1.ppc64le
pcre2-syntax-10.40-1.fc38.1.noarch
perl-srpm-macros-1-47.fc38.noarch
pkgconf-1.8.0-3.fc38.ppc64le
pkgconf-m4-1.8.0-3.fc38.noarch
pkgconf-pkg-config-1.8.0-3.fc38.ppc64le
popt-1.19-1.fc38.ppc64le
publicsuffix-list-dafsa-20221208-1.fc38.noarch
python-srpm-macros-3.11-6.fc38.noarch
qt5-srpm-macros-5.15.7-1.fc38.noarch
readline-8.2-2.fc38.ppc64le
redhat-rpm-config-235-1.fc38.noarch
rpm-4.18.0-8.fc38.ppc64le
rpm-build-4.18.0-8.fc38.ppc64le
rpm-build-libs-4.18.0-8.fc38.ppc64le
rpm-libs-4.18.0-8.fc38.ppc64le
rpm-sequoia-1.2.0-1.fc38.ppc64le
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
rust-srpm-macros-23-1.fc38.noarch
sed-4.8-11.fc37.ppc64le
setup-2.14.3-1.fc38.noarch
shadow-utils-2:4.13-3.fc38.ppc64le
sqlite-libs-3.40.0-1.fc38.ppc64le
systemd-libs-252.4-598.fc38.ppc64le
tar-2:1.34-5.fc38.ppc64le
tzdata-2022g-1.fc38.noarch
unzip-6.0-58.fc38.ppc64le
util-linux-2.38.1-3.fc38.ppc64le
util-linux-core-2.38.1-3.fc38.ppc64le
which-2.21-36.fc38.ppc64le
xxhash-libs-0.8.1-3.fc37.ppc64le
xz-5.2.9-1.fc38.ppc64le
xz-libs-5.2.9-1.fc38.ppc64le
zip-3.0-35.fc38.ppc64le
zlib-1.2.13-1.fc38.ppc64le
zstd-1.5.2-3.fc37.ppc64le
Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: unzip-6.0-58.fc38.ppc64le
qt5-srpm-macros-5.15.7-1.fc38.noarch
package-notes-srpm-macros-0.5-6.fc38.noarch
redhat-rpm-config-235-1.fc38.noarch
cpio-2.13-13.fc38.ppc64le
p11-kit-0.24.1-5.fc38.ppc64le
libcap-ng-0.8.3-4.fc38.ppc64le
pkgconf-1.8.0-3.fc38.ppc64le
gdbm-libs-1.23-2.fc38.ppc64le
coreutils-9.1-8.fc38.ppc64le
libssh-config-0.10.4-2.fc38.noarch
patch-2.7.6-17.fc38.ppc64le
fedora-release-common-38-0.6.noarch
perl-srpm-macros-1-47.fc38.noarch
libblkid-2.38.1-3.fc38.ppc64le
libeconf-0.4.0-4.fc38.ppc64le
libmount-2.38.1-3.fc38.ppc64le
rpm-libs-4.18.0-8.fc38.ppc64le
libnghttp2-1.51.0-1.fc38.ppc64le
libnsl2-2.0.0-4.fc38.ppc64le
gnat-srpm-macros-4-16.fc37.noarch
openldap-2.6.3-1.fc38.ppc64le
glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le
go-srpm-macros-3.2.0-1.fc38.noarch
tzdata-2022g-1.fc38.noarch
rpm-build-libs-4.18.0-8.fc38.ppc64le
librtas-2.0.3-1.fc38.ppc64le
elfutils-libs-0.188-3.fc38.ppc64le
fedora-release-38-0.6.noarch
libunistring-1.0-2.fc38.ppc64le
fonts-srpm-macros-2.0.5-10.fc38.noarch
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
libcurl-7.87.0-1.fc38.ppc64le
gmp-6.2.1-3.fc38.ppc64le
keyutils-libs-1.6.1-5.fc38.ppc64le
libgomp-13.0.0-0.4.fc38.ppc64le
libattr-2.5.1-5.fc38.ppc64le
glibc-common-2.36.9000-19.fc38.ppc64le
ansible-srpm-macros-1-8.1.fc38.noarch
findutils-4.9.0-2.fc38.ppc64le
libsepol-3.4-4.fc38.ppc64le
setup-2.14.3-1.fc38.noarch
file-libs-5.42-4.fc38.ppc64le
libevent-2.1.12-7.fc38.ppc64le
kernel-srpm-macros-1.0-15.fc37.noarch
libsmartcols-2.38.1-3.fc38.ppc64le
libcom_err-1.46.5-3.fc38.ppc64le
libbrotli-1.0.9-9.fc38.ppc64le
fpc-srpm-macros-1.3-6.fc37.noarch
openssl-libs-3.0.5-6.fc38.ppc64le
sqlite-libs-3.40.0-1.fc38.ppc64le
libstdc++-13.0.0-0.4.fc38.ppc64le
diffutils-3.8-3.fc38.ppc64le
grep-3.8-1.fc38.ppc64le
xz-libs-5.2.9-1.fc38.ppc64le
xz-5.2.9-1.fc38.ppc64le
tar-1.34-5.fc38.ppc64le
file-5.42-4.fc38.ppc64le
zlib-1.2.13-1.fc38.ppc64le
gawk-5.1.1-4.fc38.ppc64le
elfutils-0.188-3.fc38.ppc64le
fedora-release-identity-basic-38-0.6.noarch
dwz-0.15-1.fc38.ppc64le
libacl-2.3.1-4.fc38.ppc64le
sed-4.8-11.fc37.ppc64le
fedora-repos-38-0.3.noarch
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
gpg-pubkey-5323552a-6112bcdc
authselect-1.4.2-1.fc38.ppc64le
rpm-build-4.18.0-8.fc38.ppc64le
cracklib-2.9.7-30.fc38.ppc64le
libtirpc-1.3.3-0.fc38.ppc64le
libzstd-1.5.2-3.fc37.ppc64le
libutempter-1.2.1-7.fc38.ppc64le
libxcrypt-4.4.33-5.fc38.ppc64le
mpfr-4.1.1-2.fc38.ppc64le
bzip2-1.0.8-12.fc38.ppc64le
libsemanage-3.4-6.fc38.ppc64le
efi-srpm-macros-5-6.fc37.noarch
which-2.21-36.fc38.ppc64le
rpm-sequoia-1.2.0-1.fc38.ppc64le
lz4-libs-1.9.3-5.fc38.ppc64le
libffi-3.4.4-1.fc38.ppc64le
libuuid-2.38.1-3.fc38.ppc64le
libxml2-2.10.3-2.fc38.ppc64le
elfutils-default-yama-scope-0.188-3.fc38.noarch
elfutils-libelf-0.188-3.fc38.ppc64le
readline-8.2-2.fc38.ppc64le
libpkgconf-1.8.0-3.fc38.ppc64le
rust-srpm-macros-23-1.fc38.noarch
gzip-1.12-2.fc38.ppc64le
libidn2-2.3.4-1.fc38.ppc64le
fedora-repos-rawhide-38-0.3.noarch
ghc-srpm-macros-1.5.0-7.fc37.noarch
authselect-libs-1.4.2-1.fc38.ppc64le
gdb-minimal-12.1-10.fc38.ppc64le
binutils-2.39-6.fc38.ppc64le
debugedit-5.0-5.fc37.ppc64le
pam-libs-1.5.2-15.fc38.ppc64le
popt-1.19-1.fc38.ppc64le
nettle-3.8-2.fc38.ppc64le
jansson-2.13.1-5.fc38.ppc64le
pam-1.5.2-15.fc38.ppc64le
pcre2-syntax-10.40-1.fc38.1.noarch
binutils-gold-2.39-6.fc38.ppc64le
ed-1.18-2.fc38.ppc64le
nim-srpm-macros-3-7.fc37.noarch
gpg-pubkey-eb10b464-6202d9c6
coreutils-common-9.1-8.fc38.ppc64le
python-srpm-macros-3.11-6.fc38.noarch
libdb-5.3.28-54.fc38.ppc64le
glibc-gconv-extra-2.36.9000-19.fc38.ppc64le
elfutils-debuginfod-client-0.188-3.fc38.ppc64le
info-7.0.1-1.fc38.ppc64le
util-linux-2.38.1-3.fc38.ppc64le
p11-kit-trust-0.24.1-5.fc38.ppc64le
libarchive-3.6.1-3.fc38.ppc64le
util-linux-core-2.38.1-3.fc38.ppc64le
ocaml-srpm-macros-7-2.fc37.noarch
fedora-gpg-keys-38-0.3.noarch
systemd-libs-252.4-598.fc38.ppc64le
libtasn1-4.19.0-1.fc38.ppc64le
alternatives-1.21-1.fc38.ppc64le
lua-srpm-macros-1-7.fc37.noarch
libcap-2.48-5.fc38.ppc64le
libssh-0.10.4-2.fc38.ppc64le
ncurses-libs-6.3-5.20221126.fc38.ppc64le
libsigsegv-2.14-3.fc38.ppc64le
krb5-libs-1.20.1-3.fc38.ppc64le
ca-certificates-2022.2.54-5.fc37.noarch
lua-libs-5.4.4-6.fc38.ppc64le
shadow-utils-4.13-3.fc38.ppc64le
libselinux-3.4-6.fc38.ppc64le
cyrus-sasl-lib-2.1.28-8.fc38.ppc64le
rpm-4.18.0-8.fc38.ppc64le
ncurses-base-6.3-5.20221126.fc38.noarch
basesystem-11-14.fc37.noarch
audit-libs-3.0.9-2.fc38.ppc64le
zip-3.0-35.fc38.ppc64le
filesystem-3.18-2.fc37.ppc64le
bash-5.2.9-3.fc38.ppc64le
publicsuffix-list-dafsa-20221208-1.fc38.noarch
libpsl-0.21.1-6.fc38.ppc64le
pkgconf-pkg-config-1.8.0-3.fc38.ppc64le
pcre2-10.40-1.fc38.1.ppc64le
libverto-0.3.2-4.fc38.ppc64le
libgcc-13.0.0-0.4.fc38.ppc64le
zstd-1.5.2-3.fc37.ppc64le
libpwquality-1.4.5-1.fc38.ppc64le
xxhash-libs-0.8.1-3.fc37.ppc64le
libfdisk-2.38.1-3.fc38.ppc64le
glibc-2.36.9000-19.fc38.ppc64le
pkgconf-m4-1.8.0-3.fc38.noarch
openblas-srpm-macros-2-12.fc37.noarch
curl-7.87.0-1.fc38.ppc64le
bzip2-libs-1.0.8-12.fc38.ppc64le
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1658448000
Wrote: /builddir/build/SRPMS/pymol-2.5.0-5.fc38.src.rpm
Finish: rpmbuild -bs
cp: ‘var/lib/mock/fedora-rawhide-ppc64le-1672073286.329146/root/var/log’: No such file or directory
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-ppc64le-1672073286.329146/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-ppc64le-1672073286.329146/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-ppc64le-1672073286.329146/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-qrmi4v7e/pymol/pymol.spec) Config(child) 1 minutes 31 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=115200): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/pymol-2.5.0-5.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1672073286.329146 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/pymol-2.5.0-5.fc38.src.rpm) Config(fedora-rawhide-ppc64le)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1672073286.329146/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1672073286.329146/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1672073286.329146/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 9.7 kB/s | 3.0 kB 00:00
Copr repository 28 MB/s | 32 MB 00:01
Additional repo https_jakub_fedorapeople_org_fe 6.9 kB/s | 3.0 kB 00:00
fedora 22 kB/s | 6.7 kB 00:00
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for pymol-2.5.0-5.fc38.src.rpm
Start: build setup for pymol-2.5.0-5.fc38.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1658448000
Wrote: /builddir/build/SRPMS/pymol-2.5.0-5.fc38.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 10 kB/s | 3.0 kB 00:00
Copr repository 31 MB/s | 32 MB 00:01
Additional repo https_jakub_fedorapeople_org_fe 8.8 kB/s | 3.0 kB 00:00
fedora 71 kB/s | 6.7 kB 00:00
Dependencies resolved.
==============================================================================================================================
Package Arch Version Repository Size
==============================================================================================================================
Installing:
catch-devel ppc64le 2.13.8-3.fc38 copr_base 197 k
desktop-file-utils ppc64le 0.26-7.fc38 copr_base 78 k
freeglut-devel ppc64le 3.4.0-1.fc38 copr_base 891 k
freetype-devel ppc64le 2.12.1-3.fc38 copr_base 859 k
gcc-c++ ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 12 M
glew-devel ppc64le 2.2.0-3.fc38 copr_base 217 k
glm-devel noarch 0.9.9.8-4.fc37 fedora 302 k
libappstream-glib ppc64le 0.8.2-1.fc38 copr_base 403 k
libpng-devel ppc64le 2:1.6.37-13.fc38 copr_base 295 k
libxml2-devel ppc64le 2.10.3-2.fc38 copr_base 502 k
mesa-libGL-devel ppc64le 22.3.1-1.fc38 copr_base 36 k
mmtf-cpp-devel ppc64le 1.1.0-1.fc38 fedora 30 k
msgpack-devel ppc64le 3.1.0-10.fc38 copr_base 313 k
netcdf-devel ppc64le 4.9.0-4.fc38 copr_base 90 k
python3-devel ppc64le 3.11.1-1.fc38 fedora 269 k
python3-mmtf noarch 1.1.2-18.fc37 fedora 77 k
python3-numpy ppc64le 1:1.23.5-1.fc38 copr_base 7.3 M
python3-qt5-devel ppc64le 5.15.6-9.fc38 fedora 523 k
python3-setuptools noarch 65.5.1-1.fc38 fedora 1.7 M
python3-simplejson ppc64le 3.17.6-4.fc37 fedora 330 k
Installing dependencies:
alsa-lib ppc64le 1.2.8-2.fc38 copr_base 570 k
annobin-docs noarch 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 93 k
annobin-plugin-gcc ppc64le 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 890 k
avahi-libs ppc64le 0.8-19.fc38 copr_base 72 k
blosc ppc64le 1.21.1-3.fc38 copr_base 53 k
bluez-libs ppc64le 5.66-4.fc38 copr_base 91 k
brotli ppc64le 1.0.9-9.fc38 copr_base 345 k
brotli-devel ppc64le 1.0.9-9.fc38 copr_base 32 k
bzip2-devel ppc64le 1.0.8-12.fc38 copr_base 214 k
cairo ppc64le 1.17.6-2.fc38 copr_base 757 k
cairo-gobject ppc64le 1.17.6-2.fc38 copr_base 19 k
cdparanoia-libs ppc64le 10.2-40.fc38 copr_base 61 k
cmake ppc64le 3.25.1-1.fc38 copr_base 6.8 M
cmake-data noarch 3.25.1-1.fc38 copr_base 1.7 M
cmake-filesystem ppc64le 3.25.1-1.fc38 copr_base 17 k
cmake-rpm-macros noarch 3.25.1-1.fc38 copr_base 16 k
cpp ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 9.8 M
crypto-policies-scripts noarch 20221215-1.gita4c31a3.fc38 fedora 116 k
cups-libs ppc64le 1:2.4.2-5.fc38 copr_base 320 k
dbus ppc64le 1:1.14.4-1.fc38 copr_base 8.3 k
dbus-broker ppc64le 32-1.fc38 copr_base 189 k
dbus-common noarch 1:1.14.4-1.fc38 copr_base 15 k
dbus-libs ppc64le 1:1.14.4-1.fc38 copr_base 177 k
emacs-filesystem noarch 1:28.1-3.fc37 fedora 9.5 k
expat ppc64le 2.5.0-1.fc38 copr_base 117 k
fdk-aac-free ppc64le 2.0.0-9.fc38 copr_base 361 k
flac-libs ppc64le 1.4.2-1.fc38 copr_base 269 k
flexiblas ppc64le 3.2.1-3.fc38 fedora 32 k
flexiblas-netlib ppc64le 3.2.1-3.fc38 fedora 2.7 M
flexiblas-openblas-openmp ppc64le 3.2.1-3.fc38 fedora 16 k
fontconfig ppc64le 2.14.1-2.fc38 copr_base 328 k
fonts-filesystem noarch 1:2.0.5-10.fc38 fedora 8.0 k
freeglut ppc64le 3.4.0-1.fc38 copr_base 163 k
freetype ppc64le 2.12.1-3.fc38 copr_base 471 k
fribidi ppc64le 1.0.12-2.fc38 copr_base 93 k
gc ppc64le 8.2.2-1.fc38 copr_base 122 k
gcc ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 30 M
gcc-gfortran ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 11 M
gcc-plugin-annobin ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 32 k
gdk-pixbuf2 ppc64le 2.42.10-1.fc38 copr_base 475 k
gl-manpages noarch 1.1-25.20190306.fc37 fedora 1.2 M
glib2 ppc64le 2.74.1-2.fc38 copr_base 2.8 M
glib2-devel ppc64le 2.74.1-2.fc38 copr_base 540 k
glibc-devel ppc64le 2.36.9000-19.fc38 fedora 546 k
glx-utils ppc64le 8.4.0-14.20210504git0f9e7d9.fc38 copr_base 44 k
gnutls ppc64le 3.7.8-9.fc38 copr_base 1.1 M
google-noto-fonts-common noarch 20201206^1.git0c78c8329-9.fc38 fedora 18 k
google-noto-sans-vf-fonts noarch 20201206^1.git0c78c8329-9.fc38 fedora 729 k
graphene ppc64le 1.10.6-4.fc38 copr_base 89 k
graphite2 ppc64le 1.3.14-10.fc38 copr_base 105 k
graphite2-devel ppc64le 1.3.14-10.fc38 copr_base 21 k
groff-base ppc64le 1.22.4-10.fc38 copr_base 1.1 M
gsm ppc64le 1.0.22-1.fc38 copr_base 38 k
gssdp ppc64le 1.6.2-1.fc38 copr_base 62 k
gstreamer1 ppc64le 1.20.4-1.fc38 copr_base 1.5 M
gstreamer1-plugins-bad-free ppc64le 1.20.4-2.fc38 copr_base 3.0 M
gstreamer1-plugins-base ppc64le 1.20.4-1.fc38 copr_base 2.2 M
guile22 ppc64le 2.2.7-6.fc38 copr_base 6.5 M
gupnp ppc64le 1.6.3-1.fc38 copr_base 116 k
gupnp-igd ppc64le 1.2.0-7.fc38 copr_base 36 k
harfbuzz ppc64le 6.0.0-1.fc38 copr_base 897 k
harfbuzz-devel ppc64le 6.0.0-1.fc38 copr_base 367 k
harfbuzz-icu ppc64le 6.0.0-1.fc38 copr_base 17 k
hdf-libs ppc64le 4.2.15-11.fc38 copr_base 318 k
hdf5 ppc64le 1.12.1-10.fc38 copr_base 2.3 M
hdf5-devel ppc64le 1.12.1-10.fc38 copr_base 1.3 M
iso-codes noarch 4.12.0-2.fc38 fedora 3.5 M
json-glib ppc64le 1.6.6-3.fc38 copr_base 154 k
jsoncpp ppc64le 1.9.5-3.fc38 copr_base 101 k
kernel-headers ppc64le 6.1.0-1.fc38 fedora 1.5 M
lame-libs ppc64le 3.100-13.fc38 copr_base 355 k
langpacks-core-font-en noarch 3.0-27.fc38 fedora 9.9 k
lcms2 ppc64le 2.14-1.fc38 copr_base 205 k
libGLEW ppc64le 2.2.0-3.fc38 copr_base 170 k
libICE ppc64le 1.0.10-9.fc38 copr_base 77 k
libSM ppc64le 1.2.3-11.fc38 copr_base 43 k
libX11 ppc64le 1.8.1-2.fc38 copr_base 698 k
libX11-common noarch 1.8.1-2.fc38 copr_base 150 k
libX11-devel ppc64le 1.8.1-2.fc38 copr_base 939 k
libX11-xcb ppc64le 1.8.1-2.fc38 copr_base 13 k
libXau ppc64le 1.0.11-1.fc38 copr_base 33 k
libXau-devel ppc64le 1.0.11-1.fc38 copr_base 14 k
libXext ppc64le 1.3.5-1.fc38 copr_base 41 k
libXfixes ppc64le 6.0.0-4.fc38 copr_base 20 k
libXft ppc64le 2.3.6-1.fc38 copr_base 77 k
libXi ppc64le 1.8-3.fc38 copr_base 42 k
libXrender ppc64le 0.9.11-1.fc38 copr_base 29 k
libXv ppc64le 1.0.11-17.fc38 copr_base 20 k
libXxf86vm ppc64le 1.1.5-1.fc38 fedora 18 k
libaec ppc64le 1.0.6-3.fc38 copr_base 45 k
libaec-devel ppc64le 1.0.6-3.fc38 copr_base 12 k
libasan ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 477 k
libasyncns ppc64le 0.8-23.fc38 copr_base 31 k
libatomic ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 19 k
libb2 ppc64le 0.98.1-7.fc38 copr_base 26 k
libblkid-devel ppc64le 2.38.1-3.fc38 fedora 16 k
libcurl-devel ppc64le 7.87.0-1.fc38 copr_base 895 k
libdatrie ppc64le 0.2.13-4.fc38 copr_base 35 k
libdrm ppc64le 2.4.114-1.fc38 copr_base 109 k
libdrm-devel ppc64le 2.4.114-1.fc38 copr_base 160 k
libdvdnav ppc64le 6.1.1-4.fc38 copr_base 59 k
libdvdread ppc64le 6.1.3-2.fc38 copr_base 77 k
libevdev ppc64le 1.13.0-1.fc38 copr_base 44 k
libffi-devel ppc64le 3.4.4-1.fc38 copr_base 29 k
libgfortran ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 597 k
libglvnd ppc64le 1:1.6.0-1.fc38 copr_base 131 k
libglvnd-core-devel ppc64le 1:1.6.0-1.fc38 copr_base 18 k
libglvnd-devel ppc64le 1:1.6.0-1.fc38 copr_base 158 k
libglvnd-egl ppc64le 1:1.6.0-1.fc38 copr_base 42 k
libglvnd-gles ppc64le 1:1.6.0-1.fc38 copr_base 34 k
libglvnd-glx ppc64le 1:1.6.0-1.fc38 copr_base 148 k
libglvnd-opengl ppc64le 1:1.6.0-1.fc38 copr_base 45 k
libgudev ppc64le 237-3.fc38 copr_base 35 k
libicu ppc64le 71.1-2.fc38 copr_base 10 M
libicu-devel ppc64le 71.1-2.fc38 copr_base 844 k
libinput ppc64le 1.22.0-2.fc38 copr_base 214 k
libjpeg-turbo ppc64le 2.1.4-1.fc38 copr_base 209 k
libmount-devel ppc64le 2.38.1-3.fc38 fedora 18 k
libmpc ppc64le 1.2.1-5.fc38 copr_base 85 k
libnice ppc64le 0.1.19-3.fc38 copr_base 208 k
libogg ppc64le 2:1.3.5-4.fc38 copr_base 35 k
libpng ppc64le 2:1.6.37-13.fc38 copr_base 139 k
libquadmath ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 195 k
libquadmath-devel ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 20 k
librsvg2 ppc64le 2.55.1-3.fc38 copr_base 3.1 M
libselinux-devel ppc64le 3.4-6.fc38 copr_base 115 k
libsepol-devel ppc64le 3.4-4.fc38 copr_base 40 k
libsndfile ppc64le 1.1.0-5.fc38 copr_base 243 k
libsoup3 ppc64le 3.2.2-1.fc38 copr_base 394 k
libsrtp ppc64le 2.3.0-9.fc38 copr_base 64 k
libstdc++-devel ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 2.4 M
libstemmer ppc64le 2.2.0-4.fc38 fedora 176 k
libthai ppc64le 0.1.29-3.fc38 copr_base 216 k
libtheora ppc64le 1:1.1.1-32.fc38 copr_base 174 k
libtool-ltdl ppc64le 2.4.7-3.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 41 k
libubsan ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 234 k
libunwind ppc64le 1.6.2-5.fc38 copr_base 65 k
libusb1 ppc64le 1.0.26-1.fc38 copr_base 81 k
libuv ppc64le 1:1.44.2-2.fc38 copr_base 162 k
libva ppc64le 2.16.0-1.fc38 copr_base 114 k
libvisual ppc64le 1:0.4.0-36.fc38 copr_base 151 k
libvorbis ppc64le 1:1.3.7-6.fc38 copr_base 211 k
libwacom ppc64le 2.4.0-1.fc38 copr_base 47 k
libwacom-data noarch 2.4.0-1.fc38 copr_base 111 k
libwayland-client ppc64le 1.21.0-1.fc37 fedora 35 k
libwayland-cursor ppc64le 1.21.0-1.fc37 fedora 20 k
libwayland-egl ppc64le 1.21.0-1.fc37 fedora 13 k
libwayland-server ppc64le 1.21.0-1.fc37 fedora 46 k
libwebp ppc64le 1.2.4-2.fc38 copr_base 260 k
libxcb ppc64le 1.13.1-10.fc38 copr_base 244 k
libxcb-devel ppc64le 1.13.1-10.fc38 copr_base 1.0 M
libxcrypt-devel ppc64le 4.4.33-5.fc38 copr_base 31 k
libxkbcommon ppc64le 1.4.1-2.fc38 copr_base 153 k
libxkbcommon-x11 ppc64le 1.4.1-2.fc38 copr_base 23 k
libxshmfence ppc64le 1.3-11.fc38 copr_base 13 k
lilv-libs ppc64le 0.24.14-3.fc38 copr_base 66 k
make ppc64le 1:4.3-11.fc38 copr_base 549 k
mesa-filesystem ppc64le 22.3.1-1.fc38 copr_base 19 k
mesa-libEGL ppc64le 22.3.1-1.fc38 copr_base 147 k
mesa-libEGL-devel ppc64le 22.3.1-1.fc38 copr_base 22 k
mesa-libGL ppc64le 22.3.1-1.fc38 copr_base 196 k
mesa-libGLU ppc64le 9.0.1-7.fc38 copr_base 173 k
mesa-libGLU-devel ppc64le 9.0.1-7.fc38 copr_base 13 k
mesa-libgbm ppc64le 22.3.1-1.fc38 copr_base 50 k
mesa-libglapi ppc64le 22.3.1-1.fc38 copr_base 56 k
mpdecimal ppc64le 2.5.1-4.fc38 copr_base 118 k
mpg123-libs ppc64le 1.31.1-3.fc38 copr_base 379 k
msgpack ppc64le 3.1.0-10.fc38 copr_base 32 k
mtdev ppc64le 1.1.6-4.fc38 copr_base 23 k
ncurses ppc64le 6.3-5.20221126.fc38 copr_base 416 k
netcdf ppc64le 4.9.0-4.fc38 copr_base 910 k
nspr ppc64le 4.35.0-2.fc38 fedora 170 k
nss ppc64le 3.85.0-1.fc38 fedora 786 k
nss-softokn ppc64le 3.85.0-1.fc38 fedora 1.1 M
nss-softokn-freebl ppc64le 3.85.0-1.fc38 fedora 334 k
nss-sysinit ppc64le 3.85.0-1.fc38 fedora 18 k
nss-util ppc64le 3.85.0-1.fc38 fedora 96 k
openal-soft ppc64le 1.22.2-6.fc38 copr_base 512 k
openblas ppc64le 0.3.21-4.fc38 fedora 35 k
openblas-openmp ppc64le 0.3.21-4.fc38 fedora 4.4 M
opus ppc64le 1.3.1-11.fc37 fedora 222 k
orc ppc64le 0.4.33-1.fc38 copr_base 217 k
pango ppc64le 1.50.12-1.fc38 copr_base 372 k
pcre ppc64le 8.45-1.fc38.2 copr_base 209 k
pcre2-devel ppc64le 10.40-1.fc38.1 copr_base 474 k
pcre2-utf16 ppc64le 10.40-1.fc38.1 copr_base 221 k
pcre2-utf32 ppc64le 10.40-1.fc38.1 copr_base 209 k
perl-Carp noarch 1.52-489.fc37 fedora 29 k
perl-Class-Struct noarch 0.66-492.fc38 copr_base 26 k
perl-DynaLoader ppc64le 1.52-492.fc38 copr_base 29 k
perl-Encode ppc64le 4:3.19-492.fc38 copr_base 1.7 M
perl-English noarch 1.11-492.fc38 copr_base 17 k
perl-Errno ppc64le 1.36-492.fc38 copr_base 18 k
perl-Exporter noarch 5.77-489.fc37 fedora 31 k
perl-Fcntl ppc64le 1.15-492.fc38 copr_base 25 k
perl-File-Basename noarch 2.85-492.fc38 copr_base 21 k
perl-File-Find noarch 1.40-492.fc38 copr_base 29 k
perl-File-Path noarch 2.18-489.fc37 fedora 35 k
perl-File-Temp noarch 1:0.231.100-489.fc37 fedora 59 k
perl-File-stat noarch 1.12-492.fc38 copr_base 21 k
perl-Getopt-Long noarch 1:2.54-1.fc38 fedora 60 k
perl-Getopt-Std noarch 1.13-492.fc38 copr_base 19 k
perl-HTTP-Tiny noarch 0.082-1.fc37 fedora 55 k
perl-IO ppc64le 1.50-492.fc38 copr_base 91 k
perl-IPC-Open3 noarch 1.22-492.fc38 copr_base 26 k
perl-MIME-Base64 ppc64le 3.16-489.fc38 copr_base 31 k
perl-POSIX ppc64le 2.03-492.fc38 copr_base 123 k
perl-PathTools ppc64le 3.84-489.fc38 copr_base 83 k
perl-Pod-Escapes noarch 1:1.07-489.fc37 fedora 20 k
perl-Pod-Perldoc noarch 3.28.01-490.fc37 fedora 90 k
perl-Pod-Simple noarch 1:3.43-490.fc37 fedora 225 k
perl-Pod-Usage noarch 4:2.03-3.fc37 fedora 40 k
perl-Scalar-List-Utils ppc64le 5:1.63-489.fc38 copr_base 75 k
perl-SelectSaver noarch 1.02-492.fc38 copr_base 15 k
perl-Socket ppc64le 4:2.036-1.fc38 copr_base 57 k
perl-Storable ppc64le 1:3.26-489.fc38 copr_base 101 k
perl-Symbol noarch 1.09-492.fc38 copr_base 18 k
perl-Term-ANSIColor noarch 5.01-490.fc37 fedora 48 k
perl-Term-Cap noarch 1.17-489.fc37 fedora 22 k
perl-Text-ParseWords noarch 3.31-489.fc37 fedora 16 k
perl-Text-Tabs+Wrap noarch 2021.0814-489.fc37 fedora 22 k
perl-Time-Local noarch 2:1.300-489.fc37 fedora 33 k
perl-constant noarch 1.33-490.fc37 fedora 23 k
perl-if noarch 0.61.000-492.fc38 copr_base 17 k
perl-interpreter ppc64le 4:5.36.0-492.fc38 copr_base 76 k
perl-libs ppc64le 4:5.36.0-492.fc38 copr_base 2.2 M
perl-mro ppc64le 1.26-492.fc38 copr_base 33 k
perl-overload noarch 1.35-492.fc38 copr_base 49 k
perl-overloading noarch 0.02-492.fc38 copr_base 16 k
perl-parent noarch 1:0.239-1.fc38 fedora 14 k
perl-podlators noarch 1:5.00-1.fc38 fedora 127 k
perl-vars noarch 1.05-492.fc38 copr_base 16 k
pixman ppc64le 0.40.0-6.fc38 copr_base 226 k
pulseaudio-libs ppc64le 16.1-2.fc38 copr_base 688 k
pyproject-rpm-macros noarch 1.5.0-1.fc38 fedora 40 k
python-pip-wheel noarch 22.3.1-1.fc38 fedora 1.4 M
python-qt5-rpm-macros noarch 5.15.6-9.fc38 fedora 9.1 k
python-rpm-macros noarch 3.11-6.fc38 fedora 19 k
python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k
python3 ppc64le 3.11.1-1.fc38 fedora 27 k
python3-dbus ppc64le 1.3.2-1.fc38 copr_base 152 k
python3-libs ppc64le 3.11.1-1.fc38 fedora 9.7 M
python3-msgpack ppc64le 1.0.4-3.fc37 fedora 99 k
python3-packaging noarch 21.3-7.fc38 fedora 98 k
python3-pyparsing noarch 3.0.9-2.fc37 fedora 262 k
python3-pyqt5-sip ppc64le 12.11.0-2.fc37 fedora 78 k
python3-qt5 ppc64le 5.15.6-9.fc38 fedora 1.2 M
python3-qt5-base ppc64le 5.15.6-9.fc38 fedora 3.2 M
python3-rpm-generators noarch 13-2.fc37 fedora 30 k
python3-rpm-macros noarch 3.11-6.fc38 fedora 15 k
qt-settings noarch 37.0-1.fc38 fedora 11 k
qt5-qtbase ppc64le 5.15.7-1.fc38 fedora 3.8 M
qt5-qtbase-common noarch 5.15.7-1.fc38 fedora 12 k
qt5-qtbase-devel ppc64le 5.15.7-1.fc38 fedora 3.7 M
qt5-qtbase-gui ppc64le 5.15.7-1.fc38 fedora 6.9 M
qt5-qtconnectivity ppc64le 5.15.7-1.fc38 fedora 512 k
qt5-qtdeclarative ppc64le 5.15.7-1.fc38 fedora 4.6 M
qt5-qtlocation ppc64le 5.15.7-1.fc38 fedora 3.3 M
qt5-qtmultimedia ppc64le 5.15.7-1.fc38 fedora 883 k
qt5-qtsensors ppc64le 5.15.7-1.fc38 fedora 246 k
qt5-qtserialport ppc64le 5.15.7-1.fc38 fedora 68 k
qt5-qtsvg ppc64le 5.15.7-1.fc38 fedora 198 k
qt5-qttools-common noarch 5.15.7-1.fc38 fedora 11 k
qt5-qttools-libs-designer ppc64le 5.15.7-1.fc38 fedora 2.8 M
qt5-qttools-libs-help ppc64le 5.15.7-1.fc38 fedora 174 k
qt5-qtwebchannel ppc64le 5.15.7-1.fc38 fedora 107 k
qt5-qtwebsockets ppc64le 5.15.7-1.fc38 fedora 92 k
qt5-qtx11extras ppc64le 5.15.7-1.fc38 fedora 35 k
qt5-qtxmlpatterns ppc64le 5.15.7-1.fc38 fedora 1.0 M
qt5-rpm-macros noarch 5.15.7-1.fc38 fedora 9.7 k
rhash ppc64le 1.4.3-1.fc38 fedora 205 k
serd ppc64le 0.30.12-2.fc37 fedora 68 k
shared-mime-info ppc64le 2.2-2.fc37 fedora 385 k
snappy ppc64le 1.1.9-5.fc37 fedora 38 k
sord ppc64le 0.16.10-1.fc37 fedora 51 k
soundtouch ppc64le 2.3.1-3.fc37 fedora 98 k
sratom ppc64le 0.6.10-2.fc37 fedora 27 k
sysprof-capture-devel ppc64le 3.46.0-1.fc38 fedora 66 k
vim-filesystem noarch 2:9.0.1054-1.fc38 fedora 19 k
vulkan-headers noarch 1.3.231.1-1.fc38 fedora 1.0 M
vulkan-loader ppc64le 1.3.231.1-2.fc38 fedora 164 k
vulkan-loader-devel ppc64le 1.3.231.1-2.fc38 fedora 9.1 k
webrtc-audio-processing ppc64le 0.3.1-9.fc37 fedora 326 k
xcb-util ppc64le 0.4.0-20.fc37 fedora 19 k
xcb-util-image ppc64le 0.4.1-1.fc38 fedora 20 k
xcb-util-keysyms ppc64le 0.4.1-1.fc38 fedora 14 k
xcb-util-renderutil ppc64le 0.3.10-1.fc38 fedora 18 k
xcb-util-wm ppc64le 0.4.2-1.fc38 fedora 32 k
xkeyboard-config noarch 2.36-3.fc38 fedora 956 k
xml-common noarch 0.6.3-59.fc37 fedora 31 k
xorg-x11-proto-devel noarch 2022.2-2.fc38 fedora 299 k
xz-devel ppc64le 5.2.9-1.fc38 fedora 58 k
zlib-devel ppc64le 1.2.13-1.fc38 fedora 45 k
Transaction Summary
==============================================================================================================================
Install 313 Packages
Total size: 224 M
Total download size: 136 M
Installed size: 983 M
Downloading Packages:
[SKIPPED] expat-2.5.0-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] gc-8.2.2-1.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] groff-base-1.22.4-10.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] guile22-2.2.7-6.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libb2-0.98.1-7.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libmpc-1.2.1-5.fc38.ppc64le.rpm: Already downloaded
[SKIPPED] libxcrypt-devel-4.4.33-5.fc38.ppc64le.rpm: Already downloaded
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libdrm-devel-2.4.114-1.fc38.ppc64le
libdvdnav-6.1.1-4.fc38.ppc64le
libdvdread-6.1.3-2.fc38.ppc64le
libevdev-1.13.0-1.fc38.ppc64le
libffi-devel-3.4.4-1.fc38.ppc64le
libgfortran-13.0.0-0.4.fc38.ppc64le
libglvnd-1:1.6.0-1.fc38.ppc64le
libglvnd-core-devel-1:1.6.0-1.fc38.ppc64le
libglvnd-devel-1:1.6.0-1.fc38.ppc64le
libglvnd-egl-1:1.6.0-1.fc38.ppc64le
libglvnd-gles-1:1.6.0-1.fc38.ppc64le
libglvnd-glx-1:1.6.0-1.fc38.ppc64le
libglvnd-opengl-1:1.6.0-1.fc38.ppc64le
libgudev-237-3.fc38.ppc64le
libicu-71.1-2.fc38.ppc64le
libicu-devel-71.1-2.fc38.ppc64le
libinput-1.22.0-2.fc38.ppc64le
libjpeg-turbo-2.1.4-1.fc38.ppc64le
libmount-devel-2.38.1-3.fc38.ppc64le
libmpc-1.2.1-5.fc38.ppc64le
libnice-0.1.19-3.fc38.ppc64le
libogg-2:1.3.5-4.fc38.ppc64le
libpng-2:1.6.37-13.fc38.ppc64le
libpng-devel-2:1.6.37-13.fc38.ppc64le
libquadmath-13.0.0-0.4.fc38.ppc64le
libquadmath-devel-13.0.0-0.4.fc38.ppc64le
librsvg2-2.55.1-3.fc38.ppc64le
libselinux-devel-3.4-6.fc38.ppc64le
libsepol-devel-3.4-4.fc38.ppc64le
libsndfile-1.1.0-5.fc38.ppc64le
libsoup3-3.2.2-1.fc38.ppc64le
libsrtp-2.3.0-9.fc38.ppc64le
libstdc++-devel-13.0.0-0.4.fc38.ppc64le
libstemmer-2.2.0-4.fc38.ppc64le
libthai-0.1.29-3.fc38.ppc64le
libtheora-1:1.1.1-32.fc38.ppc64le
libtool-ltdl-2.4.7-3.0.1.fc38.ppc64le
libubsan-13.0.0-0.4.fc38.ppc64le
libunwind-1.6.2-5.fc38.ppc64le
libusb1-1.0.26-1.fc38.ppc64le
libuv-1:1.44.2-2.fc38.ppc64le
libva-2.16.0-1.fc38.ppc64le
libvisual-1:0.4.0-36.fc38.ppc64le
libvorbis-1:1.3.7-6.fc38.ppc64le
libwacom-2.4.0-1.fc38.ppc64le
libwacom-data-2.4.0-1.fc38.noarch
libwayland-client-1.21.0-1.fc37.ppc64le
libwayland-cursor-1.21.0-1.fc37.ppc64le
libwayland-egl-1.21.0-1.fc37.ppc64le
libwayland-server-1.21.0-1.fc37.ppc64le
libwebp-1.2.4-2.fc38.ppc64le
libxcb-1.13.1-10.fc38.ppc64le
libxcb-devel-1.13.1-10.fc38.ppc64le
libxcrypt-devel-4.4.33-5.fc38.ppc64le
libxkbcommon-1.4.1-2.fc38.ppc64le
libxkbcommon-x11-1.4.1-2.fc38.ppc64le
libxml2-devel-2.10.3-2.fc38.ppc64le
libxshmfence-1.3-11.fc38.ppc64le
lilv-libs-0.24.14-3.fc38.ppc64le
make-1:4.3-11.fc38.ppc64le
mesa-filesystem-22.3.1-1.fc38.ppc64le
mesa-libEGL-22.3.1-1.fc38.ppc64le
mesa-libEGL-devel-22.3.1-1.fc38.ppc64le
mesa-libGL-22.3.1-1.fc38.ppc64le
mesa-libGL-devel-22.3.1-1.fc38.ppc64le
mesa-libGLU-9.0.1-7.fc38.ppc64le
mesa-libGLU-devel-9.0.1-7.fc38.ppc64le
mesa-libgbm-22.3.1-1.fc38.ppc64le
mesa-libglapi-22.3.1-1.fc38.ppc64le
mmtf-cpp-devel-1.1.0-1.fc38.ppc64le
mpdecimal-2.5.1-4.fc38.ppc64le
mpg123-libs-1.31.1-3.fc38.ppc64le
msgpack-3.1.0-10.fc38.ppc64le
msgpack-devel-3.1.0-10.fc38.ppc64le
mtdev-1.1.6-4.fc38.ppc64le
ncurses-6.3-5.20221126.fc38.ppc64le
netcdf-4.9.0-4.fc38.ppc64le
netcdf-devel-4.9.0-4.fc38.ppc64le
nspr-4.35.0-2.fc38.ppc64le
nss-3.85.0-1.fc38.ppc64le
nss-softokn-3.85.0-1.fc38.ppc64le
nss-softokn-freebl-3.85.0-1.fc38.ppc64le
nss-sysinit-3.85.0-1.fc38.ppc64le
nss-util-3.85.0-1.fc38.ppc64le
openal-soft-1.22.2-6.fc38.ppc64le
openblas-0.3.21-4.fc38.ppc64le
openblas-openmp-0.3.21-4.fc38.ppc64le
opus-1.3.1-11.fc37.ppc64le
orc-0.4.33-1.fc38.ppc64le
pango-1.50.12-1.fc38.ppc64le
pcre-8.45-1.fc38.2.ppc64le
pcre2-devel-10.40-1.fc38.1.ppc64le
pcre2-utf16-10.40-1.fc38.1.ppc64le
pcre2-utf32-10.40-1.fc38.1.ppc64le
perl-Carp-1.52-489.fc37.noarch
perl-Class-Struct-0.66-492.fc38.noarch
perl-DynaLoader-1.52-492.fc38.ppc64le
perl-Encode-4:3.19-492.fc38.ppc64le
perl-English-1.11-492.fc38.noarch
perl-Errno-1.36-492.fc38.ppc64le
perl-Exporter-5.77-489.fc37.noarch
perl-Fcntl-1.15-492.fc38.ppc64le
perl-File-Basename-2.85-492.fc38.noarch
perl-File-Find-1.40-492.fc38.noarch
perl-File-Path-2.18-489.fc37.noarch
perl-File-Temp-1:0.231.100-489.fc37.noarch
perl-File-stat-1.12-492.fc38.noarch
perl-Getopt-Long-1:2.54-1.fc38.noarch
perl-Getopt-Std-1.13-492.fc38.noarch
perl-HTTP-Tiny-0.082-1.fc37.noarch
perl-IO-1.50-492.fc38.ppc64le
perl-IPC-Open3-1.22-492.fc38.noarch
perl-MIME-Base64-3.16-489.fc38.ppc64le
perl-POSIX-2.03-492.fc38.ppc64le
perl-PathTools-3.84-489.fc38.ppc64le
perl-Pod-Escapes-1:1.07-489.fc37.noarch
perl-Pod-Perldoc-3.28.01-490.fc37.noarch
perl-Pod-Simple-1:3.43-490.fc37.noarch
perl-Pod-Usage-4:2.03-3.fc37.noarch
perl-Scalar-List-Utils-5:1.63-489.fc38.ppc64le
perl-SelectSaver-1.02-492.fc38.noarch
perl-Socket-4:2.036-1.fc38.ppc64le
perl-Storable-1:3.26-489.fc38.ppc64le
perl-Symbol-1.09-492.fc38.noarch
perl-Term-ANSIColor-5.01-490.fc37.noarch
perl-Term-Cap-1.17-489.fc37.noarch
perl-Text-ParseWords-3.31-489.fc37.noarch
perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch
perl-Time-Local-2:1.300-489.fc37.noarch
perl-constant-1.33-490.fc37.noarch
perl-if-0.61.000-492.fc38.noarch
perl-interpreter-4:5.36.0-492.fc38.ppc64le
perl-libs-4:5.36.0-492.fc38.ppc64le
perl-mro-1.26-492.fc38.ppc64le
perl-overload-1.35-492.fc38.noarch
perl-overloading-0.02-492.fc38.noarch
perl-parent-1:0.239-1.fc38.noarch
perl-podlators-1:5.00-1.fc38.noarch
perl-vars-1.05-492.fc38.noarch
pixman-0.40.0-6.fc38.ppc64le
pulseaudio-libs-16.1-2.fc38.ppc64le
pyproject-rpm-macros-1.5.0-1.fc38.noarch
python-pip-wheel-22.3.1-1.fc38.noarch
python-qt5-rpm-macros-5.15.6-9.fc38.noarch
python-rpm-macros-3.11-6.fc38.noarch
python-setuptools-wheel-65.5.1-1.fc38.noarch
python3-3.11.1-1.fc38.ppc64le
python3-dbus-1.3.2-1.fc38.ppc64le
python3-devel-3.11.1-1.fc38.ppc64le
python3-libs-3.11.1-1.fc38.ppc64le
python3-mmtf-1.1.2-18.fc37.noarch
python3-msgpack-1.0.4-3.fc37.ppc64le
python3-numpy-1:1.23.5-1.fc38.ppc64le
python3-packaging-21.3-7.fc38.noarch
python3-pyparsing-3.0.9-2.fc37.noarch
python3-pyqt5-sip-12.11.0-2.fc37.ppc64le
python3-qt5-5.15.6-9.fc38.ppc64le
python3-qt5-base-5.15.6-9.fc38.ppc64le
python3-qt5-devel-5.15.6-9.fc38.ppc64le
python3-rpm-generators-13-2.fc37.noarch
python3-rpm-macros-3.11-6.fc38.noarch
python3-setuptools-65.5.1-1.fc38.noarch
python3-simplejson-3.17.6-4.fc37.ppc64le
qt-settings-37.0-1.fc38.noarch
qt5-qtbase-5.15.7-1.fc38.ppc64le
qt5-qtbase-common-5.15.7-1.fc38.noarch
qt5-qtbase-devel-5.15.7-1.fc38.ppc64le
qt5-qtbase-gui-5.15.7-1.fc38.ppc64le
qt5-qtconnectivity-5.15.7-1.fc38.ppc64le
qt5-qtdeclarative-5.15.7-1.fc38.ppc64le
qt5-qtlocation-5.15.7-1.fc38.ppc64le
qt5-qtmultimedia-5.15.7-1.fc38.ppc64le
qt5-qtsensors-5.15.7-1.fc38.ppc64le
qt5-qtserialport-5.15.7-1.fc38.ppc64le
qt5-qtsvg-5.15.7-1.fc38.ppc64le
qt5-qttools-common-5.15.7-1.fc38.noarch
qt5-qttools-libs-designer-5.15.7-1.fc38.ppc64le
qt5-qttools-libs-help-5.15.7-1.fc38.ppc64le
qt5-qtwebchannel-5.15.7-1.fc38.ppc64le
qt5-qtwebsockets-5.15.7-1.fc38.ppc64le
qt5-qtx11extras-5.15.7-1.fc38.ppc64le
qt5-qtxmlpatterns-5.15.7-1.fc38.ppc64le
qt5-rpm-macros-5.15.7-1.fc38.noarch
rhash-1.4.3-1.fc38.ppc64le
serd-0.30.12-2.fc37.ppc64le
shared-mime-info-2.2-2.fc37.ppc64le
snappy-1.1.9-5.fc37.ppc64le
sord-0.16.10-1.fc37.ppc64le
soundtouch-2.3.1-3.fc37.ppc64le
sratom-0.6.10-2.fc37.ppc64le
sysprof-capture-devel-3.46.0-1.fc38.ppc64le
vim-filesystem-2:9.0.1054-1.fc38.noarch
vulkan-headers-1.3.231.1-1.fc38.noarch
vulkan-loader-1.3.231.1-2.fc38.ppc64le
vulkan-loader-devel-1.3.231.1-2.fc38.ppc64le
webrtc-audio-processing-0.3.1-9.fc37.ppc64le
xcb-util-0.4.0-20.fc37.ppc64le
xcb-util-image-0.4.1-1.fc38.ppc64le
xcb-util-keysyms-0.4.1-1.fc38.ppc64le
xcb-util-renderutil-0.3.10-1.fc38.ppc64le
xcb-util-wm-0.4.2-1.fc38.ppc64le
xkeyboard-config-2.36-3.fc38.noarch
xml-common-0.6.3-59.fc37.noarch
xorg-x11-proto-devel-2022.2-2.fc38.noarch
xz-devel-5.2.9-1.fc38.ppc64le
zlib-devel-1.2.13-1.fc38.ppc64le
Complete!
Finish: build setup for pymol-2.5.0-5.fc38.src.rpm
Start: rpmbuild pymol-2.5.0-5.fc38.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1658448000
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.GikSmT
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf pymol-open-source-2.5.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pymol-open-source-2.5.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pymol-open-source-2.5.0
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-setup.py.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-wmclass-main.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-wmclass-pmgapp.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-mmtf.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-2.5.0-bug186.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ ln -sr modules/web modules/pymol_web
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.aJeNQr
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pymol-open-source-2.5.0
+ export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
++ /usr/bin/getconf _NPROCESSORS_ONLN
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' --use-msgpackc=c++11 --use-openmp=yes --jobs 5
running build
running build_py
creating build/lib.linux-ppc64le-cpython-311
creating build/lib.linux-ppc64le-cpython-311/pymol2
copying modules/pymol2/cmd2.py -> build/lib.linux-ppc64le-cpython-311/pymol2
copying modules/pymol2/__init__.py -> build/lib.linux-ppc64le-cpython-311/pymol2
creating build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/xwin.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/xray.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/wizarding.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/viewing.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/vfont.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/util.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/shortcut_manager.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/shortcut_dict.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/shortcut.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/setting.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/seqalign.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/selector.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/selecting.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/save_shortcut.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/rpc.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/querying.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/pymolhttpd.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/preset.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/povray.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/parsing.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/parser.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/mpeg_encode.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/moving.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/movie.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/morphing.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/monitoring.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/menu.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/locking.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/lazyio.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/keywords.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/keyboard.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/invocation.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/internal.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/importing.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/helping.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/headering.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/gui.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/fitting.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/feedingback.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/externing.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/exporting.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/experimenting.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/editor.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/editing.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/diagnosing.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/creating.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/controlling.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/constants_palette.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/constants.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/computing.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/completing.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/commanding.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/colorramping.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/colorprinting.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/cmd.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/checking.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/cgo.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/callback.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/api.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/_gui.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/__main__.py -> build/lib.linux-ppc64le-cpython-311/pymol
copying modules/pymol/__init__.py -> build/lib.linux-ppc64le-cpython-311/pymol
creating build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/toggle.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/security.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/renaming.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/openvr.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/nucmutagenesis.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/message.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/measurement.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/label.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/filter.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/dragging.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/distance.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/density.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/demo.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/command.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/charge.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/box.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/appearance.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/annotation.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
copying modules/pymol/wizard/__init__.py -> build/lib.linux-ppc64le-cpython-311/pymol/wizard
creating build/lib.linux-ppc64le-cpython-311/pymol/stereochemistry
copying modules/pymol/stereochemistry/__init__.py -> build/lib.linux-ppc64le-cpython-311/pymol/stereochemistry
creating build/lib.linux-ppc64le-cpython-311/pymol/plugins
copying modules/pymol/plugins/repository.py -> build/lib.linux-ppc64le-cpython-311/pymol/plugins
copying modules/pymol/plugins/managergui_qt.py -> build/lib.linux-ppc64le-cpython-311/pymol/plugins
copying modules/pymol/plugins/managergui.py -> build/lib.linux-ppc64le-cpython-311/pymol/plugins
copying modules/pymol/plugins/legacysupport.py -> build/lib.linux-ppc64le-cpython-311/pymol/plugins
copying modules/pymol/plugins/installation.py -> build/lib.linux-ppc64le-cpython-311/pymol/plugins
copying modules/pymol/plugins/__init__.py -> build/lib.linux-ppc64le-cpython-311/pymol/plugins
creating build/lib.linux-ppc64le-cpython-311/pymol/Qt
copying modules/pymol/Qt/utils.py -> build/lib.linux-ppc64le-cpython-311/pymol/Qt
copying modules/pymol/Qt/__init__.py -> build/lib.linux-ppc64le-cpython-311/pymol/Qt
creating build/lib.linux-ppc64le-cpython-311/pmg_tk
copying modules/pmg_tk/PMGApp.py -> build/lib.linux-ppc64le-cpython-311/pmg_tk
copying modules/pmg_tk/volume.py -> build/lib.linux-ppc64le-cpython-311/pmg_tk
copying modules/pmg_tk/__init__.py -> build/lib.linux-ppc64le-cpython-311/pmg_tk
copying modules/pmg_tk/TextEditor.py -> build/lib.linux-ppc64le-cpython-311/pmg_tk
copying modules/pmg_tk/Setting.py -> build/lib.linux-ppc64le-cpython-311/pmg_tk
copying modules/pmg_tk/SetEditor.py -> build/lib.linux-ppc64le-cpython-311/pmg_tk
copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.linux-ppc64le-cpython-311/pmg_tk
copying modules/pmg_tk/Demo.py -> build/lib.linux-ppc64le-cpython-311/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> build/lib.linux-ppc64le-cpython-311/pmg_tk
creating build/lib.linux-ppc64le-cpython-311/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> build/lib.linux-ppc64le-cpython-311/pmg_tk/startup
creating build/lib.linux-ppc64le-cpython-311/pmg_tk/skins
copying modules/pmg_tk/skins/__init__.py -> build/lib.linux-ppc64le-cpython-311/pmg_tk/skins
creating build/lib.linux-ppc64le-cpython-311/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> build/lib.linux-ppc64le-cpython-311/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.linux-ppc64le-cpython-311/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.linux-ppc64le-cpython-311/pmg_tk/skins/normal
creating build/lib.linux-ppc64le-cpython-311/pmg_tk/skins/demo
copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.linux-ppc64le-cpython-311/pmg_tk/skins/demo
creating build/lib.linux-ppc64le-cpython-311/pmg_qt
copying modules/pmg_qt/volume.py -> build/lib.linux-ppc64le-cpython-311/pmg_qt
copying modules/pmg_qt/shortcut_menu_gui.py -> build/lib.linux-ppc64le-cpython-311/pmg_qt
copying modules/pmg_qt/pymol_qt_gui.py -> build/lib.linux-ppc64le-cpython-311/pmg_qt
copying modules/pmg_qt/pymol_gl_widget.py -> build/lib.linux-ppc64le-cpython-311/pmg_qt
copying modules/pmg_qt/properties_dialog.py -> build/lib.linux-ppc64le-cpython-311/pmg_qt
copying modules/pmg_qt/mimic_tk.py -> build/lib.linux-ppc64le-cpython-311/pmg_qt
copying modules/pmg_qt/mimic_pmg_tk.py -> build/lib.linux-ppc64le-cpython-311/pmg_qt
copying modules/pmg_qt/keymapping.py -> build/lib.linux-ppc64le-cpython-311/pmg_qt
copying modules/pmg_qt/file_dialogs.py -> build/lib.linux-ppc64le-cpython-311/pmg_qt
copying modules/pmg_qt/builder.py -> build/lib.linux-ppc64le-cpython-311/pmg_qt
copying modules/pmg_qt/advanced_settings_gui.py -> build/lib.linux-ppc64le-cpython-311/pmg_qt
copying modules/pmg_qt/__init__.py -> build/lib.linux-ppc64le-cpython-311/pmg_qt
copying modules/pmg_qt/TextEditor.py -> build/lib.linux-ppc64le-cpython-311/pmg_qt
creating build/lib.linux-ppc64le-cpython-311/pmg_qt/syntax
copying modules/pmg_qt/syntax/python.py -> build/lib.linux-ppc64le-cpython-311/pmg_qt/syntax
copying modules/pmg_qt/syntax/pmlparser.py -> build/lib.linux-ppc64le-cpython-311/pmg_qt/syntax
copying modules/pmg_qt/syntax/pml.py -> build/lib.linux-ppc64le-cpython-311/pmg_qt/syntax
copying modules/pmg_qt/syntax/__init__.py -> build/lib.linux-ppc64le-cpython-311/pmg_qt/syntax
creating build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/__init__.py -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
creating build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/xyz.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/water_residues.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/water_amber.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/solvate.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/sdf.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/protein_residues.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/protein_mmff.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/protein_amber99.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/protein_amber.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/protein.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/place.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/pkl.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/pdb.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/neighbor.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/mol2.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/mol.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/models.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/mmd.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/mass.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/map.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/mae.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/lst.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/io.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/hetatm.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/gms.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/gamess1.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/dictdb.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/cpv.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/cif.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/charge.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/cc1.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/brick.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/bonds.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/bond_mmff.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/bond_amber.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/arc.py -> build/lib.linux-ppc64le-cpython-311/chempy
copying modules/chempy/__init__.py -> build/lib.linux-ppc64le-cpython-311/chempy
creating build/lib.linux-ppc64le-cpython-311/chempy/tinker
copying modules/chempy/tinker/state.py -> build/lib.linux-ppc64le-cpython-311/chempy/tinker
copying modules/chempy/tinker/realtime.py -> build/lib.linux-ppc64le-cpython-311/chempy/tinker
copying modules/chempy/tinker/keyword.py -> build/lib.linux-ppc64le-cpython-311/chempy/tinker
copying modules/chempy/tinker/amber.py -> build/lib.linux-ppc64le-cpython-311/chempy/tinker
copying modules/chempy/tinker/__init__.py -> build/lib.linux-ppc64le-cpython-311/chempy/tinker
creating build/lib.linux-ppc64le-cpython-311/chempy/mmtf
copying modules/chempy/mmtf/io.py -> build/lib.linux-ppc64le-cpython-311/chempy/mmtf
copying modules/chempy/mmtf/__init__.py -> build/lib.linux-ppc64le-cpython-311/chempy/mmtf
creating build/lib.linux-ppc64le-cpython-311/chempy/fragments
copying modules/chempy/fragments/__init__.py -> build/lib.linux-ppc64le-cpython-311/chempy/fragments
creating build/lib.linux-ppc64le-cpython-311/chempy/fast
copying modules/chempy/fast/__init__.py -> build/lib.linux-ppc64le-cpython-311/chempy/fast
creating build/lib.linux-ppc64le-cpython-311/chempy/champ
copying modules/chempy/champ/formal_charges.py -> build/lib.linux-ppc64le-cpython-311/chempy/champ
copying modules/chempy/champ/assign.py -> build/lib.linux-ppc64le-cpython-311/chempy/champ
copying modules/chempy/champ/amber99.py -> build/lib.linux-ppc64le-cpython-311/chempy/champ
copying modules/chempy/champ/__init__.py -> build/lib.linux-ppc64le-cpython-311/chempy/champ
creating build/lib.linux-ppc64le-cpython-311/chempy/bmin
copying modules/chempy/bmin/util.py -> build/lib.linux-ppc64le-cpython-311/chempy/bmin
copying modules/chempy/bmin/state.py -> build/lib.linux-ppc64le-cpython-311/chempy/bmin
copying modules/chempy/bmin/realtime.py -> build/lib.linux-ppc64le-cpython-311/chempy/bmin
copying modules/chempy/bmin/commands.py -> build/lib.linux-ppc64le-cpython-311/chempy/bmin
copying modules/chempy/bmin/__init__.py -> build/lib.linux-ppc64le-cpython-311/chempy/bmin
copying modules/pmg_qt/forms/shortcut_menu.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/save_object.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/save_molecule.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/render.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/props.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/png.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/pluginmanager.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/pluginitem.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/movieexport.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_traj.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_mtz.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_map.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_mae.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_aln.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/help_shortcut.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/fetch.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/create_shortcut.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/colors.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/change_confirm.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/askpartial.ui -> build/lib.linux-ppc64le-cpython-311/pmg_qt/forms
running build_ext
building 'pymol._cmd' extension
creating build/temp.linux-ppc64le-cpython-311
creating build/temp.linux-ppc64le-cpython-311/build
creating build/temp.linux-ppc64le-cpython-311/build/generated
creating build/temp.linux-ppc64le-cpython-311/contrib
creating build/temp.linux-ppc64le-cpython-311/contrib/mmtf-c
creating build/temp.linux-ppc64le-cpython-311/contrib/uiuc
creating build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins
creating build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin
creating build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src
creating build/temp.linux-ppc64le-cpython-311/layer0
creating build/temp.linux-ppc64le-cpython-311/layer1
creating build/temp.linux-ppc64le-cpython-311/layer2
creating build/temp.linux-ppc64le-cpython-311/layer3
creating build/temp.linux-ppc64le-cpython-311/layer4
creating build/temp.linux-ppc64le-cpython-311/layer5
creating build/temp.linux-ppc64le-cpython-311/ov
creating build/temp.linux-ppc64le-cpython-311/ov/src
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD build/generated/ShaderText.cpp -o build/temp.linux-ppc64le-cpython-311/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/mmtf-c/mmtf_parser.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/mmtf-c/mmtf_parser.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘get_atom_radius’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable ‘type’ set but not used [-Wunused-but-set-variable]
166 | char *name, *type;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable ‘name’ set but not used [-Wunused-but-set-variable]
166 | char *name, *type;
| ^~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘read_pqr_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation]
109 | strncpy(tmp, record, PQR_RECORD_LENGTH);
| ^
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable ‘numatoms’ set but not used [-Wunused-but-set-variable]
103 | int i, numatoms;
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘write_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:206:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
206 | if (fwrite(tmp, sizeof(double), 3*n, namdbin->fd) != 3*n) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘open_namdbin_read’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
78 | fread(&filen, sizeof(namdbin_int32), 1, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘read_pqr_structure’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation]
137 | strncpy(name, record+12, 4); name[4] = 0;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation]
138 | strncpy(resname, record+17, 4); resname[4] = 0;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3: warning: ‘strncpy’ output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation]
139 | strncpy(chain, record+21, 1); chain[1] = 0;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation]
140 | strncpy(resid, record+22, 4); resid[4] = 0;
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp:51:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function ‘write_psf_structure’:
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
782 | if (strlen(atoms[i].type) > fw) {
| ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: ‘fortread_4’ defined but not used [-Wunused-function]
103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘fort_get_endian_reclen’ defined but not used [-Wunused-function]
55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘fort_eat_recmark’ defined but not used [-Wunused-function]
36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘swap8_aligned’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_structure’:
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
730 | if (len > sizeof(name)) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1060 | for (i=0; i<(3 * mmtk->atom_numberdim); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function ‘void* open_grid_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
84 | fread(&dataBegin, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:60:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: ‘void strnwscpy(char*, const char*, int)’ defined but not used [-Wunused-function]
133 | static void strnwscpy(char *target, const char *source, const int len) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘int fort_get_endian_reclen(int, int, int, int*, int*)’ defined but not used [-Wunused-function]
55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘int fort_eat_recmark(FILE*, int)’ defined but not used [-Wunused-function]
36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:59:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘void* open_cube_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
175 | fgets(readbuf, 1023, cube->fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
181 | fgets(readbuf, 1023, cube->fd); // skip second header line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
326 | fgets(readbuf, 1023, cube->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
337 | fgets(readbuf, 1023, cube->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
339 | fscanf(cube->fd, "%d", &cube->nsets);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
344 | fscanf(cube->fd, "%d", &orb);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
349 | fgets(readbuf, 1023, cube->fd); // gobble up rest of line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:107:13: warning: ‘void cube_buildrotmat(cube_t*, float*, float*, float*)’ defined but not used [-Wunused-function]
107 | static void cube_buildrotmat(cube_t *cube, float *o, float *a, float *b)
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:42:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘int get_pte_idx_from_string(const char*)’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘int get_pte_idx(const char*)’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘open_cube_read(char const*, char const*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:179:10: warning: ‘__strncat_chk’ output may be truncated copying 240 bytes from a string of length 1023 [-Wstringop-truncation]
179 | strncat(voltmpl.dataname, readbuf, 240); // 240 is max space left after
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘int mdio_readline(md_file*, char*, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
426 | fgets(buf, n, mf->f);
| ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:48:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_readv’:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
519 | if (rc != iov[i].iov_len)
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdheader’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
191 | } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
204 | if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
222 | if (input_integer[0] != dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
399 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
416 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdstep’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
621 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
625 | if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable ‘readlen’ set but not used [-Wunused-but-set-variable]
546 | fio_size_t readlen; /* number of bytes actually read */
| ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
609 | static int fio_write_str(fio_fd fd, const char *str) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
605 | static int fio_read_int32(fio_fd fd, int *i) {
| ^~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
| ^~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘g96_header(md_file*, char*, int, float*) [clone .constprop.0]’:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:650:39: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 500 [-Wstringop-truncation]
650 | if (title && titlelen) strncpy(title, buf, titlelen);
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp: In function ‘open_gro_read(char const*, char const*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:103:12: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 80 [-Wstringop-truncation]
103 | strncpy(gmx->meta->title, mdh.title, 80);
| ^
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function ‘int read_parm7_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
78 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
204 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
257 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_resnames(const char*, int, char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
275 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
289 | fscanf(file, " %d", &cur);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘parmstruct* read_parm7_header(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
368 | fgets(sdum, 512, file);
| ~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
371 | fscanf(file, "%s\n", sdum); // "%FLAG"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
378 | fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
385 | fscanf(file, "%s\n", sdum); // "FORMAT (20a4)"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
399 | fgets(prm->title, sizeof(prm->title), file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
427 | fgets(sdum, sizeof(sdum), file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
439 | fscanf(file,parm7,
| ~~~~~~^~~~~~~~~~~~
440 | &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441 | &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
442 | &prm->Jparm, &prm->Nparm);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
443 | fscanf(file, parm7,
| ~~~~~~^~~~~~~~~~~~~
444 | &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
445 | &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
446 | &prm->Natyp, &prm->Nphb);
| ~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
447 | fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
448 | &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
449 | &prm->IfBox, &prm->Nmxrs, &prm->IfCap);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
451 | fscanf(file,"%8d",&prm->Numextra); //BB
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int read_parm7_flag(FILE*, const char*, const char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
79 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
87 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
97 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’:
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable ‘timesteprst’ set but not used [-Wunused-but-set-variable]
48 | double timesteprst;
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
67 | fgets(title, 82, fd);
| ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
70 | fgets(line, 82, fd);
| ^~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘read_parm7_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:277:12: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
277 | strncpy(resnames, buf+4*j, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:259:12: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
259 | strncpy(atom->type, buf+4*j, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:206:12: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
206 | strncpy(atom->name, buf+4*j, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
292 | if (NULL == fgets(fbuffer, 1024, data->file))
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
295 | if (NULL == fgets(fbuffer, 1024, data->file))
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
669 | fgets(fbuffer, 1024, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
554 | fgets(fbuffer, 1024, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/mmtf-c/mmtf_parser.cpp: In function ‘bool MMTF_unpack_from_file(const char*, MMTF_container*)’:
contrib/mmtf-c/mmtf_parser.cpp:1075:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1075 | fread(buffer, fileLen, 1, file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
362 | strncpy(atom->name, buf, sizeof(atom->name));
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
267 | strncpy(atom->name, buf, sizeof(atom->name));
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function ‘int {anonymous}::ReadPARM::readparm(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
435 | fscanf(file, " " DBLFMT, &prm->Charges[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
444 | fscanf(file, " " DBLFMT, &prm->Masses[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
510 | fscanf(file, " " DBLFMT, &prm->Rk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
517 | fscanf(file, " " DBLFMT, &prm->Req[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
524 | fscanf(file, " " DBLFMT, &prm->Tk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
531 | fscanf(file, " " DBLFMT, &prm->Teq[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
538 | fscanf(file, " " DBLFMT, &prm->Pk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
545 | fscanf(file, " " DBLFMT, &prm->Pn[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
552 | fscanf(file, " " DBLFMT, &prm->Phase[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
559 | fscanf(file, " " DBLFMT, &prm->Solty[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
567 | fscanf(file, " " DBLFMT, &prm->Cn1[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
575 | fscanf(file, " " DBLFMT, &prm->Cn2[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
756 | fscanf(file, " " DBLFMT, &prm->HB12[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
763 | fscanf(file, " " DBLFMT, &prm->HB6[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
771 | fscanf(file, " " DBLFMT, &H[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
853 | fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
854 | &prm->Box[0], &prm->Box[1], &prm->Box[2]);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
867 | fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
868 | &prm->Natcap, &prm->Cutcap,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
869 | &prm->Xcap, &prm->Ycap, &prm->Zcap);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘int read_dsn6_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
233 | fread(brick, sizeof(char), 512, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘void* open_dsn6_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
91 | fread(fileHeader, sizeof(short), 19, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:63:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function]
110 | static void swap4_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function ‘int read_spider_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
286 | fread(datablock, total * sizeof(float), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:36:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/mmtf-c/mmtf_parser.cpp: In function ‘MMTF_parser_fetch_typed_array(msgpack::v2::object const*, unsigned long*, int)’:
contrib/mmtf-c/mmtf_parser.cpp:869:5: warning: ‘typecheck’ may be used uninitialized [-Wmaybe-uninitialized]
869 | if (typecode != typecheck) {
| ^~
contrib/mmtf-c/mmtf_parser.cpp:864:9: note: ‘typecheck’ was declared here
864 | int typecheck;
| ^~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_readv’:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
519 | if (rc != iov[i].iov_len)
| ^~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
96 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
104 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
119 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
131 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
153 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
162 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
171 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp:53:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c: In function ‘read_tinker_structure’:
contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
103 | strncpy(atom->name, buffer, sizeof(atom->name));
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:22: warning: variable ‘o’ set but not used [-Wunused-but-set-variable]
90 | float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3];
| ^
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:28: warning: variable ‘s’ set but not used [-Wunused-but-set-variable]
90 | float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3];
| ^
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘int read_uhbd_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:254:66: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
254 | if (fread(datablock + z*xysize, sizeof(float), xysize, fd) != xysize) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
102 | fread(&headersize, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:47:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:119:3: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 82 [-Wstringop-truncation]
119 | strncpy(tmp, record, PDB_RECORD_LENGTH);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation]
144 | strncpy(numstr, record + 30, 8);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation]
149 | strncpy(numstr+10, record + 38, 8);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation]
154 | strncpy(numstr+20, record + 46, 8);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
159 | strncpy(numstr+30, record + 54, 6);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
164 | strncpy(numstr+40, record + 60, 6);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘open_pdb_read’:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation]
190 | strncpy(date, record + 50, 9);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation]
200 | strncpy(pdbcode, record + 62, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘read_pdb_structure’:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation]
299 | strncpy(name, record + 12, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3: warning: ‘strncpy’ output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation]
304 | strncpy(altloc, record + 16, 1);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation]
308 | strncpy(resname, record + 17, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation]
317 | strncpy(resid, record + 22, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
159 | strncpy(numstr+30, record + 54, 6);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
164 | strncpy(numstr+40, record + 60, 6);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation]
330 | strncpy(segname, record + 72, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5: warning: ‘strncpy’ output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation]
339 | strncpy(elementsymbol, record + 76, 2);
| ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
224 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
174 | for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
180 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
189 | for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
194 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
204 | for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘open_vasp5xdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
69 | for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
72 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
77 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int getUniqueResID(char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable ‘i’ [-Wunused-variable]
443 | int i, uid;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable ‘j’ [-Wunused-variable]
484 | int i, count, atomdata, pos, idx, xyzcount, j;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable ‘oldChain’ [-Wunused-variable]
503 | char oldChain[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readAngleBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
803 | int bondTable[32];
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable ‘j’ [-Wunused-variable]
807 | int i, pos, j, k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
811 | char modelNum[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable ‘atom’ [-Wunused-variable]
822 | molfile_atom_t * atom;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable ‘test’ [-Wunused-variable]
884 | int test = parser->nbonds + bnum;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readRMSDBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
984 | int bondTable[32];
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable ‘j’ [-Wunused-variable]
988 | int i, pos, j, k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
991 | char modelNum[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable ‘atom’ [-Wunused-variable]
1002 | molfile_atom_t * atom;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘void* open_file_write(const char*, const char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable ‘fd’ [-Wunused-variable]
1409 | FILE* fd;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:313:14: warning: ‘float stringToFloat(char*)’ defined but not used [-Wunused-function]
313 | static float stringToFloat(char * str) {
| ^~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘int get_pte_idx(const char*)’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘const char* get_pte_label(int)’ defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:71:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function]
110 | static void swap4_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:70:
contrib/uiuc/plugins/molfile_plugin/src/vmddir.h:145:12: warning: ‘int vmd_file_is_executable(const char*)’ defined but not used [-Wunused-function]
145 | static int vmd_file_is_executable(const char * filename) {
| ^~~~~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
282 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
150 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘open_vaspchgcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
71 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
75 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
81 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
103 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
131 | for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
| ^~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
239 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
242 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
204 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘open_vaspoutcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:10: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
87 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerInitAll’:
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
271 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
273 | if(ok) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerFreeAll’:
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
411 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
413 | return ok;
| ^~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_readline’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
279 | for (i = 0; i < strlen(line); ++i) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘DEN_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
970 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
971 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘POT_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1113 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1114 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp: In function ‘read_phi_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp:216:14: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
216 | strncpy(currNum, currChar, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_header’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1511 | fread(skip, 1, 8, fp);
| ^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘GEO_read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
619 | fscanf(data->file, "%*s %f %f %f", &x, &y, &z);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
238 | for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
150 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘open_vaspparchg_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
71 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
75 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
81 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
103 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
131 | for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
| ^~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘int {anonymous}::write_structure(void*, int, const molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable ‘last_ctnumber’ [-Wunused-variable]
1904 | int last_ctnumber = -1;
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘int read_plt_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:143:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
143 | if ( fread(datablock, sizeof(float), ndata, fd) != ndata ) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘void* open_plt_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
69 | fread(intHeader, sizeof(int), 5, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
82 | fread(floatHeader, sizeof(float), 6, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:42:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void put_element_ply(PlyFile*, void*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable ‘i’ [-Wunused-variable]
459 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘write_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to ‘sizeof’ in ‘strncpy’ call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess]
360 | strncpy(tmptype, atom->type, sizeof(atom->type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
232 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
246 | for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
249 | if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
256 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void ascii_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable ‘i’ [-Wunused-variable]
1407 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
195 | for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
198 | if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
203 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘open_vaspposcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
69 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
73 | for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
87 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable ‘i’ [-Wunused-variable]
1541 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:107:17: warning: variable ‘vert_other’ set but not used [-Wunused-but-set-variable]
107 | PlyOtherProp *vert_other=NULL;
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:108:17: warning: variable ‘face_other’ set but not used [-Wunused-but-set-variable]
108 | PlyOtherProp *face_other=NULL;
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1629 | fread (&len, sizeof(int), 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1631 | fread (str, len, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void get_binary_item(FILE*, int, int*, unsigned int*, double*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2057 | fread (ptr, 1, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2063 | fread (ptr, 1, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2069 | fread (ptr, 2, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2075 | fread (ptr, 2, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2081 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2087 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2093 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2099 | fread (ptr, 8, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:27:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function]
110 | static void swap4_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘recreate_command_line’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
1334 | line[0] = '\0';
| ~~~~~~~~^~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by ‘malloc’
1333 | line = (char *) malloc (sizeof(char) * len);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
283 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
228 | for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
233 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
252 | for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘open_vaspxdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
89 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
97 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
111 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
121 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘ascii_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1520:14: warning: ‘other_data’ may be used uninitialized [-Wmaybe-uninitialized]
1520 | item = elem_data + prop->offset;
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1423:9: note: ‘other_data’ was declared here
1423 | char *other_data;
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1497:18: warning: ‘item’ may be used uninitialized [-Wmaybe-uninitialized]
1497 | item += item_size;
| ~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1413:20: note: ‘item’ was declared here
1413 | char *elem_data,*item;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1643:14: warning: ‘other_data’ may be used uninitialized [-Wmaybe-uninitialized]
1643 | item = elem_data + prop->offset;
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1555:9: note: ‘other_data’ was declared here
1555 | char *other_data;
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1620:18: warning: ‘item’ may be used uninitialized [-Wmaybe-uninitialized]
1620 | item += item_size;
| ~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1546:9: note: ‘item’ was declared here
1546 | char *item;
| ^~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘read_vaspxml_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
139 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
144 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘open_vaspxml_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
86 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Crystal.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
1028 | static int fpexpftoc(char *ftocstr) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
1006 | static int have_keyline(FILE *file, const char *keystring1,
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:962:12: warning: ‘goto_keyline’ defined but not used [-Wunused-function]
962 | static int goto_keyline(FILE *file, ...) {
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
901 | static char *strtoupper(char *s) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
895 | static int iswhiteline(char *s) {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:846:13: warning: ‘eatwhitelines’ defined but not used [-Wunused-function]
846 | static void eatwhitelines(FILE *file) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:13: warning: ‘eatline’ defined but not used [-Wunused-function]
835 | static void eatline(FILE * fd, int n)
| ^~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:540:13: warning: ‘angular_momentum_expon’ defined but not used [-Wunused-function]
540 | static void angular_momentum_expon(int *ang_mom_expon,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
507 | static void del_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
| ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:471:27: warning: ‘add_wavefunction’ defined but not used [-Wunused-function]
471 | static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: ‘init_qmdata’ defined but not used [-Wunused-function]
437 | static qmdata_t* init_qmdata() {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function ‘vtf_open_file_read’:
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9: warning: ‘__strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
538 | strncat(msg, keyword, 200);
| ^
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7: warning: ‘__strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
629 | strncat(msg, keyword, 200);
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function ‘vtf_read_bonds’:
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
147 | sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n",
| ^~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
243 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
252 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
328 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
346 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
355 | fgets(nextline, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
419 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
194 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
203 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘void* open_bgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
59 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:276:45: warning: variable ‘total’ set but not used [-Wunused-but-set-variable]
276 | int x, y, z, xsize, ysize, zsize, xysize, total;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:338:45: warning: variable ‘total’ set but not used [-Wunused-but-set-variable]
338 | int x, y, z, xsize, ysize, zsize, xysize, total;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
371 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
306 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:72:
contrib/uiuc/plugins/include/vmdconio.h: At global scope:
contrib/uiuc/plugins/include/vmdconio.h:56:12: warning: ‘int vmdcon_printf(int, const char*, ...)’ defined but not used [-Wunused-function]
56 | static int vmdcon_printf(int lvl, const char *fmt, ...) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘read_bgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:120:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 224 [-Wstringop-truncation]
120 | strncpy(numstr, record + 31, 10);
| ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:125:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 214 [-Wstringop-truncation]
125 | strncpy(numstr+10, record + 41, 10);
| ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:130:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 204 [-Wstringop-truncation]
130 | strncpy(numstr+20, record + 51, 10);
| ^
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
714 | sprintf(sub, "%03x/", i);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:22: note: directive argument in the range [0, 2147483646]
714 | sprintf(sub, "%03x/", i);
| ^~~~~~~
In file included from /usr/include/stdio.h:906,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
In function ‘*__sprintfieee128’,
inlined from ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:9:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chkieee128’ output between 5 and 10 bytes into a destination of size 6
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:30: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
722 | sprintf(subsub, "%03x", j);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:29: note: directive argument in the range [0, 2147483646]
722 | sprintf(subsub, "%03x", j);
| ^~~~~~
In function ‘*__sprintfieee128’,
inlined from ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:13:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chkieee128’ output between 4 and 9 bytes into a destination of size 6
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘read_bgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:144:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 242 [-Wstringop-truncation]
144 | strncpy(name, record + 13, 5);
| ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:149:10: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 236 [-Wstringop-truncation]
149 | strncpy(resname, record + 19, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:167:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 194 [-Wstringop-truncation]
167 | strncpy(type, record+61, 5);
| ^
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘(anonymous namespace)::read_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1786:22: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation]
1786 | strncpy( ct.particles[to].type, v->second.funct.c_str(),
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function ‘open_binpos_read’:
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
64 | fread(magicchar,sizeof(char),4,fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
72 | fread(&igarb,sizeof(int),1,fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
288 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
297 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
365 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
387 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
395 | fgets(nextline, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
455 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
241 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
250 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘void* open_xbgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
72 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘read_xbgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:143:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 223 [-Wstringop-truncation]
143 | strncpy(numstr, record + 32, 10);
| ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:148:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 213 [-Wstringop-truncation]
148 | strncpy(numstr+10, record + 42, 10);
| ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:153:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 203 [-Wstringop-truncation]
153 | strncpy(numstr+20, record + 52, 10);
| ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘read_xbgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:172:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 241 [-Wstringop-truncation]
172 | strncpy(name, record + 14, 5);
| ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:177:10: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 235 [-Wstringop-truncation]
177 | strncpy(resname, record + 20, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:182:10: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 154 [-Wstringop-truncation]
182 | strncpy(segname, record + 101, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:197:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 192 [-Wstringop-truncation]
197 | strncpy(type, record+63, 5);
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘int read_brix_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
247 | fread(brick, sizeof(char), 512, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘void* open_brix_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
79 | fscanf(fd, "%3s", keyWord);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
86 | fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
93 | fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
100 | fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
109 | fscanf(fd, " %s %f %f %f %f %f %f", keyWord,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
110 | &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
123 | fscanf(fd, " %s %f", keyWord, &prod);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
128 | fscanf(fd, " %s %f", keyWord, &plus);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
135 | fscanf(fd, " %s %f", keyWord, &sigma);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
238 | fgets(readbuf, 1024, fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void* open_xsf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
408 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
442 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
444 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
446 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
448 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
450 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
473 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
508 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:37:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘int get_pte_idx_from_string(const char*)’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
326 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
339 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
344 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
349 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
363 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
373 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
266 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
268 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
272 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
295 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
305 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘open_car_read’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
169 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
179 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
182 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
210 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
213 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
224 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
226 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
230 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
234 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
245 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘read_xsf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:597:20: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
597 | strncpy(atom->name, buffer, sizeof(atom->name));
| ^
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=]
127 | sprintf(atom->resname, "%d", resid);
| ^~
In function ‘read_car_structure_line’,
inlined from ‘read_car_structure’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999]
127 | sprintf(atom->resname, "%d", resid);
| ^~~~
In file included from /usr/include/stdio.h:906,
from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85:
In function ‘*__sprintfieee128’,
inlined from ‘read_car_structure_line’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:5,
inlined from ‘read_car_structure’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12:
/usr/include/bits/stdio2.h:30:10: note: ‘*__sprintf_chkieee128’ output between 2 and 12 bytes into a destination of size 8
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘open_xsf_read(char const*, char const*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:438:22: warning: ‘strncpy’ output may be truncated copying 255 bytes from a string of length 255 [-Wstringop-truncation]
438 | strncpy(set->dataname, readbuf, 255);
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Deferred.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In member function ‘(anonymous namespace)::SitesArray::insert_row(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:784:16: warning: ‘strncpy’ specified bound 32 equals destination size [-Wstringop-truncation]
784 | strncpy(arr, value.substr(1,value.size()-2).c_str(), N);
| ^
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:786:16: warning: ‘strncpy’ specified bound 32 equals destination size [-Wstringop-truncation]
786 | strncpy(arr, value.c_str(), N);
| ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘int read_ccp4_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:495:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
495 | if ( fread(rowdata, sizeof(char), extent[0], fd) != extent[0] ) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:525:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
525 | if ( fread(rowdata, sizeof(unsigned char), extent[0], fd) != extent[0] ) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:556:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
556 | if (fread(rowdata, sizeof(float), extent[0], fd) != extent[0] ) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:588:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
588 | if (fread(rowdata, sizeof(short), extent[0], fd) != extent[0] ) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:623:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
623 | if (fread(rowdata, sizeof(unsigned short), extent[0], fd) != extent[0] ) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:655:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
655 | if ( fread(rowdata, sizeof(uchar3), extent[0], fd) != extent[0] ) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:35: warning: ‘__sprintf_chkieee128’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
675 | sprintf(answer, "%03x/", d1);
| ^
In function ‘*__sprintfieee128’,
inlined from ‘DDreldir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:13,
inlined from ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chkieee128’ output between 5 and 10 bytes into a destination of size 9
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:35: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
673 | sprintf(answer, "%03x/%03x/", d1, d2);
| ^~~~
In function ‘DDreldir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int, int)’,
inlined from ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:29: note: directive argument in the range [0, 2147483646]
673 | sprintf(answer, "%03x/%03x/", d1, d2);
| ^~~~~~~~~~~~
In function ‘*__sprintfieee128’,
inlined from ‘DDreldir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:13,
inlined from ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chkieee128’ output between 9 and 19 bytes into a destination of size 9
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘void* open_ccp4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
304 | fgets(symData, 81, fd);
| ~~~~~^~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:42:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In member function ‘(anonymous namespace)::AtomArray::insert_row(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:886:16: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation]
886 | strncpy( a.name,
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Err.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c: In function ‘read_xyz_structure’:
contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
133 | strncpy(atom->name, buffer, sizeof(atom->name));
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Block.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘open_ccp4_read(char const*, char const*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:279:3: warning: ‘dataOffset’ may be used uninitialized [-Wmaybe-uninitialized]
279 | if (dataOffset != (CCP4HDSIZE + symBytes)) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:89:8: note: ‘dataOffset’ was declared here
89 | long dataOffset, filesize;
| ^~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/MemoryDebug.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/MemoryDebug.cpp: In function ‘void* VLADeleteRaw(void*, int, unsigned int)’:
layer0/MemoryDebug.cpp:223:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
223 | if(index < -old_size)
| ~~~~~~^~~~~~~~~~~
layer0/MemoryDebug.cpp:235:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
235 | (index < vla->size) && ((count + index) <= vla->size)) {
| ~~~~~~^~~~~~~~~~~
layer0/MemoryDebug.cpp: In function ‘void* VLAInsertRaw(void*, int, unsigned int)’:
layer0/MemoryDebug.cpp:256:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
256 | if(index < -old_size)
| ~~~~~~^~~~~~~~~~~
layer0/MemoryDebug.cpp:263:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
263 | if(index > old_size)
| ~~~~~~^~~~~~~~~~
layer0/MemoryDebug.cpp:266:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
266 | if((index >= 0) && (count > 0) && (index <= old_size)) {
| ~~~~~~^~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Feedback.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/MemoryUsage.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/MemoryUsage.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/MemoryUsage.cpp: In function ‘size_t pymol::memory_usage()’:
layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=]
38 | std::fscanf(fp, "%*zu%zu", &vmRSS);
| ^~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/CarveHelper.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/CarveHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
38 | std::fscanf(fp, "%*zu%zu", &vmRSS);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/MyPNG.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘int read_edm_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
240 | fgets(readbuf, 13, edm->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
44 | fgets(readbuf, 1024, fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Field.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer0/CarveHelper.cpp:8:
layer0/CarveHelper.h: In constructor ‘CarveHelper::CarveHelper(PyMOLGlobals*, float, const float*, std::size_t)’:
layer0/CarveHelper.h:23:9: warning: ‘CarveHelper::m_cutoff’ will be initialized after [-Wreorder]
23 | float m_cutoff;
| ^~~~~~~~
layer0/CarveHelper.h:22:16: warning: ‘const float* CarveHelper::m_vertices’ [-Wreorder]
22 | const float* m_vertices;
| ^~~~~~~~~~
layer0/CarveHelper.cpp:20:1: warning: when initialized here [-Wreorder]
20 | CarveHelper::CarveHelper(PyMOLGlobals* G, float cutoff, const float* vertices,
| ^~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ContourSurf.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/ContourSurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function ‘void* open_fs4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
79 | fread(&dataBegin, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:48:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: ‘void strnwscpy(char*, const char*, int)’ defined but not used [-Wunused-function]
133 | static void strnwscpy(char *target, const char *source, const int len) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘int fort_get_endian_reclen(int, int, int, int*, int*)’ defined but not used [-Wunused-function]
55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘int fort_eat_recmark(FILE*, int)’ defined but not used [-Wunused-function]
36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:47:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
layer0/MyPNG.cpp: In function ‘int MyPNGWrite(const char*, const pymol::Image&, float, int, int, float, float, png_outbuf_t*)’:
layer0/MyPNG.cpp:299:20: warning: comparison of integer expressions of different signedness: ‘png_uint_32’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
299 | for(k = 0; k < height; k++)
| ~~^~~~~~~~
layer0/MyPNG.cpp:340:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
340 | for(b = 0; b < height; b++) {
| ~~^~~~~~~~
layer0/MyPNG.cpp:341:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
341 | for(a = 0; a < width; a++) {
| ~~^~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘have_gamess’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
1106 | char word[3][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_stats’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
2264 | char word[7][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_wavefunction’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
3573 | char word[6][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
840 | fgets(readbuf, 1024, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: At top level:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1002:13: warning: ‘print_input_data’ defined but not used [-Wunused-function]
1002 | static void print_input_data(qmdata_t *data) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
109 | static float get_pte_vdw_radius(const int idx)
| ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
102 | static float get_pte_mass(const int idx)
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
1028 | static int fpexpftoc(char *ftocstr) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
901 | static char *strtoupper(char *s) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
895 | static int iswhiteline(char *s) {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
layer0/Field.cpp: In function ‘PyObject* FieldAsNumPyArray(CField*, short int)’:
layer0/Field.cpp:83:1: warning: label ‘ok_except1’ defined but not used [-Wunused-label]
83 | ok_except1:
| ^~~~~~~~~~
layer0/Field.cpp: In function ‘CField* FieldNewFromPyList(PyMOLGlobals*, PyObject*)’:
layer0/Field.cpp:179:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
179 | ok = ok && I->size() == size;
| ~~~~~~~~~~^~~~~~~
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer0/Field.cpp:26:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’
layer0/Field.cpp:343:17: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
100 | assert(sizeof...(pos) <= n_dim());
| ~~~~~~~~~~~~~~~^~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Parse.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘read_gamess_rundata’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:615:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
615 | strncpy(sys_data->basis_string, data->basis_string,
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3: warning: ‘strncpy’ output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation]
620 | strncpy(sys_data->runtitle, data->runtitle, sizeof(sys_data->runtitle));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
621 | strncpy(sys_data->geometry, data->geometry, sizeof(sys_data->geometry));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
622 | strncpy(sys_data->version_string, data->version_string,
| ^
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer0/Isosurf.h:24,
from layer0/ContourSurf.cpp:11:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int}]’
layer0/ContourSurf.cpp:409:37: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
100 | assert(sizeof...(pos) <= n_dim());
| ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int, int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int, int}]’
layer0/ContourSurf.cpp:419:36: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_coordinates’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
1618 | strncpy(atm->type, atname, sizeof(atm->type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_runtitle’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1459:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
1459 | strncpy(data->runtitle,trimright(buffer),sizeof(data->runtitle));
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Pixmap.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Triangle.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
1981 | strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry));
| ^
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
278 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
297 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
319 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
357 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
223 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
241 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘void* open_mdf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
164 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
176 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
183 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl_firefly’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
1818 | strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry));
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/PostProcess.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
275 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
289 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
199 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
209 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
127 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
138 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘void* open_mol2_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
74 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
81 | fgets(line, LINESIZE, fd); // Read and ignore the mol_name
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
82 | fgets(line, LINESIZE, fd); // Read the molecule info
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
91 | fgets(line, LINESIZE, fd); // Read and ignore the mol_type
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(line, LINESIZE, fd); // Read the charge_type
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_options’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5: warning: ‘__strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
1422 | strncat(data->basis_string, &data->gbasis[3], 1);
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5: warning: ‘__strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
1411 | strncat(data->basis_string, &data->gbasis[2], 1);
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/File.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_proc_mem.isra.0’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5: warning: ‘strncpy’ output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation]
1279 | strncpy(data->memory,&word[2][0],sizeof(data->memory));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5: warning: ‘strncpy’ specified bound 256 equals destination size [-Wstringop-truncation]
1272 | strncpy(data->memory,trimright(temp),sizeof(data->memory));
| ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_rundata’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable ‘hessian_data’ set but not used [-Wunused-but-set-variable]
596 | molfile_qm_hessian_t *hessian_data;
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘count_orbitals’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1165 | fscanf(data->file, " Ene= %f\n", &orbenergy);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1166 | fscanf(data->file, " Spin= %s\n", spin);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1167 | fscanf(data->file, " Occup= %f\n", &occu);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
840 | fgets(readbuf, 1024, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘open_molden_read’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
224 | fscanf(data->file, "%d", &natm);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
1006 | static int have_keyline(FILE *file, const char *keystring1,
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
507 | static void del_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
| ^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
109 | static float get_pte_vdw_radius(const int idx)
| ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
102 | static float get_pte_mass(const int idx)
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_input_structure’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
1682 | strncpy(atm->type, atname, sizeof(atm->type));
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/GenericBuffer.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_structure’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
350 | strncpy(atom->type, atname, sizeof(atom->type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
351 | strncpy(atom->name, atname, sizeof(atom->name));
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
317 | strncpy(atom->name, atname, sizeof(atom->name));
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation]
326 | strncpy(data->atoms[i].type, atname, sizeof(data->atoms[i].type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘get_traj_frame.isra.0’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation]
819 | strncpy((*atoms)[i].type, (*atoms)[indexmap[i]].type, 10);
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ShaderMgr.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
91 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
116 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
132 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
149 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
155 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
161 | fgets(line, 80, infile); //one more read to keep us in sync
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
170 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
217 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
256 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Character.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘void line3(FILE*, GRASSP*)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
186 | fread(line3, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro ‘TRASH’
284 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
285 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro ‘TRASH’
291 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro ‘TRASH’
305 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
306 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro ‘TRASH’
307 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro ‘TRASH’
311 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro ‘TRASH’
313 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro ‘TRASH’
318 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
319 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro ‘TRASH’
320 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro ‘TRASH’
328 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
329 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro ‘TRASH’
330 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro ‘TRASH’
354 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
355 | fread(vertex, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro ‘TRASH’
356 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro ‘TRASH’
357 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
358 | fread(access, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro ‘TRASH’
359 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro ‘TRASH’
360 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
361 | fread(normal, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro ‘TRASH’
362 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro ‘TRASH’
371 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
372 | fread(triangle, 3 * sizeof(int), ntriangles, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro ‘TRASH’
373 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro ‘TRASH’
374 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
375 | fread(properties, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro ‘TRASH’
394 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
395 | fread(striangle, sizeof(short), 3 * ntriangles, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro ‘TRASH’
396 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro ‘TRASH’
397 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
398 | fread(properties, sizeof(float), 3 * nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:40:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Movie.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/GraphicsUtil.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Util.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Isosurf.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Color.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Util2.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer0/Isosurf.h:24,
from layer0/Isosurf.cpp:25:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer0/Isosurf.cpp:552:24: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
100 | assert(sizeof...(pos) <= n_dim());
| ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Isosurf.cpp:1459:32: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = PointType; SizeTs = {int, int, int, int}]’:
layer0/Field.h:134:26: required from ‘T* CFieldTyped<T>::ptr(SizeTs ...) [with SizeTs = {int, int, int, int}; T = PointType]’
layer0/Isosurf.cpp:1617:19: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’
layer0/Field.h:144:26: required from ‘T& CFieldTyped<T>::get(SizeTs ...) [with SizeTs = {int, int, int}; T = int]’
layer0/Isosurf.cpp:1456:15: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int, int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int, int}]’
layer0/Field.h:144:26: required from ‘T& CFieldTyped<T>::get(SizeTs ...) [with SizeTs = {int, int, int, int}; T = int]’
layer0/Isosurf.cpp:1487:13: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer1/Color.cpp: In function ‘ObjectGadgetRamp* ColorGetRamp(PyMOLGlobals*, int)’:
layer1/Color.cpp:180:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
180 | if (index < I->Ext.size()) {
| ~~~~~~^~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorExtFromPyList(PyMOLGlobals*, PyObject*, int)’:
layer1/Color.cpp:501:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
501 | for (int a = 0; a < n_ext; ++a) {
| ~~^~~~~~~
In file included from /usr/include/c++/13/cassert:44,
from /usr/include/glm/detail/setup.hpp:3,
from /usr/include/glm/detail/qualifier.hpp:3,
from /usr/include/glm/detail/type_vec2.hpp:6,
from /usr/include/glm/ext/vector_bool2.hpp:5,
from /usr/include/glm/vec2.hpp:5,
from layer0/GenericBuffer.h:12,
from layer0/ShaderMgr.h:24,
from layer1/Scene.h:29,
from layer3/Executive.h:35,
from layer1/Color.cpp:31:
layer1/Color.cpp:515:18: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
515 | assert(a_new <= I->Ext.size());
| ~~~~~~^~~~~~~~~~~~~~~~
layer1/Color.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
518 | if (a_new == I->Ext.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorFromPyList(PyMOLGlobals*, PyObject*, int)’:
layer1/Color.cpp:569:44: warning: comparison of integer expressions of different signedness: ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
569 | if (partial_restore && I->Color.size() > index) {
| ~~~~~~~~~~~~~~~~^~~~~~~
layer1/Color.cpp:575:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
575 | if (index >= I->Color.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~~~
layer1/Color.cpp:576:30: warning: comparison of integer expressions of different signedness: ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
576 | assert(I->Color.size() == index);
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer1/Color.cpp: In function ‘int ColorGetIndex(PyMOLGlobals*, const char*)’:
layer1/Color.cpp:683:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
683 | if((i < I->Color.size()) && (i >= 0))
| ~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘const char* ColorGetName(PyMOLGlobals*, int)’:
layer1/Color.cpp:764:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
764 | if((index >= 0) && (index < I->Color.size())) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp:776:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
776 | if (a < I->Ext.size()) {
| ~~^~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorGetStatus(PyMOLGlobals*, int)’:
layer1/Color.cpp:792:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
792 | if((index >= 0) && (index < I->Color.size())) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘void ColorReset(PyMOLGlobals*)’:
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1026:3: note: in expansion of macro ‘reg_named_color’
1026 | reg_named_color("white", 1.F, 1.F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1027:3: note: in expansion of macro ‘reg_named_color’
1027 | reg_named_color("black", 0.F, 0.F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1028:3: note: in expansion of macro ‘reg_named_color’
1028 | reg_named_color("blue", 0.F, 0.F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1029:3: note: in expansion of macro ‘reg_named_color’
1029 | reg_named_color("green", 0.F, 1.F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1030:3: note: in expansion of macro ‘reg_named_color’
1030 | reg_named_color("red", 1.F, 0.F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1031:3: note: in expansion of macro ‘reg_named_color’
1031 | reg_named_color("cyan", 0.F, 1.F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1032:3: note: in expansion of macro ‘reg_named_color’
1032 | reg_named_color("yellow", 1.F, 1.F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1033:3: note: in expansion of macro ‘reg_named_color’
1033 | reg_named_color("dash", 1.F, 1.F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1034:3: note: in expansion of macro ‘reg_named_color’
1034 | reg_named_color("magenta", 1.F, 0.F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1035:3: note: in expansion of macro ‘reg_named_color’
1035 | reg_named_color("salmon", 1.F, 0.6F, 0.6F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1036:3: note: in expansion of macro ‘reg_named_color’
1036 | reg_named_color("lime", 0.5F, 1.F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1037:3: note: in expansion of macro ‘reg_named_color’
1037 | reg_named_color("slate", 0.5F, 0.5F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1038:3: note: in expansion of macro ‘reg_named_color’
1038 | reg_named_color("hotpink", 1.F, 0.F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1039:3: note: in expansion of macro ‘reg_named_color’
1039 | reg_named_color("orange", 1.F, 0.5F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1040:3: note: in expansion of macro ‘reg_named_color’
1040 | reg_named_color("chartreuse", 0.5F, 1.F, 0.F); /* AKA puke green */
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1041:3: note: in expansion of macro ‘reg_named_color’
1041 | reg_named_color("limegreen", 0.F, 1.F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1042:3: note: in expansion of macro ‘reg_named_color’
1042 | reg_named_color("purpleblue", 0.5F, 0.F, 1.F); /* legacy name */
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1043:3: note: in expansion of macro ‘reg_named_color’
1043 | reg_named_color("marine", 0.F, 0.5F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1044:3: note: in expansion of macro ‘reg_named_color’
1044 | reg_named_color("olive", 0.77F, 0.7F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1045:3: note: in expansion of macro ‘reg_named_color’
1045 | reg_named_color("purple", 0.75F, 0.F, 0.75F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1046:3: note: in expansion of macro ‘reg_named_color’
1046 | reg_named_color("teal", 0.F, 0.75F, 0.75F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1047:3: note: in expansion of macro ‘reg_named_color’
1047 | reg_named_color("ruby", 0.6F, 0.2F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1048:3: note: in expansion of macro ‘reg_named_color’
1048 | reg_named_color("forest", 0.2F, 0.6F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1049:3: note: in expansion of macro ‘reg_named_color’
1049 | reg_named_color("deepblue", 0.25F, 0.25F, 0.65F); /* was "deep" */
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1050:3: note: in expansion of macro ‘reg_named_color’
1050 | reg_named_color("grey", 0.5F, 0.5F, 0.5F); /* english spelling */
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1051:3: note: in expansion of macro ‘reg_named_color’
1051 | reg_named_color("gray", 0.5F, 0.5F, 0.5F); /* american spelling */
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1052:3: note: in expansion of macro ‘reg_named_color’
1052 | reg_named_color("carbon", 0.2F, 1.F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1053:3: note: in expansion of macro ‘reg_named_color’
1053 | reg_named_color("nitrogen", 0.2F, 0.2F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1054:3: note: in expansion of macro ‘reg_named_color’
1054 | reg_named_color("oxygen", 1.F, 0.3F, 0.3F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1055:3: note: in expansion of macro ‘reg_named_color’
1055 | reg_named_color("hydrogen", 0.9F, 0.9F, 0.9F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1056:3: note: in expansion of macro ‘reg_named_color’
1056 | reg_named_color("brightorange", 1.F, 0.7F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1057:3: note: in expansion of macro ‘reg_named_color’
1057 | reg_named_color("sulfur", 0.9F, 0.775F, 0.25F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1058:3: note: in expansion of macro ‘reg_named_color’
1058 | reg_named_color("tv_red", 1.F, 0.2F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1059:3: note: in expansion of macro ‘reg_named_color’
1059 | reg_named_color("tv_green", 0.2F, 1.F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1060:3: note: in expansion of macro ‘reg_named_color’
1060 | reg_named_color("tv_blue", 0.3F, 0.3F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1061:3: note: in expansion of macro ‘reg_named_color’
1061 | reg_named_color("tv_yellow", 1.F, 1.F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1062:3: note: in expansion of macro ‘reg_named_color’
1062 | reg_named_color("yelloworange", 1.F, 0.87F, 0.37F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1063:3: note: in expansion of macro ‘reg_named_color’
1063 | reg_named_color("tv_orange", 1.F, 0.55F, 0.15F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1064:3: note: in expansion of macro ‘reg_named_color’
1064 | reg_named_color("br0", 0.1F, 0.1F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1065:3: note: in expansion of macro ‘reg_named_color’
1065 | reg_named_color("br1", 0.2F, 0.1F, 0.9F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1066:3: note: in expansion of macro ‘reg_named_color’
1066 | reg_named_color("br2", 0.3F, 0.1F, 0.8F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1067:3: note: in expansion of macro ‘reg_named_color’
1067 | reg_named_color("br3", 0.4F, 0.1F, 0.7F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1068:3: note: in expansion of macro ‘reg_named_color’
1068 | reg_named_color("br4", 0.5F, 0.1F, 0.6F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1069:3: note: in expansion of macro ‘reg_named_color’
1069 | reg_named_color("br5", 0.6F, 0.1F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1070:3: note: in expansion of macro ‘reg_named_color’
1070 | reg_named_color("br6", 0.7F, 0.1F, 0.4F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1071:3: note: in expansion of macro ‘reg_named_color’
1071 | reg_named_color("br7", 0.8F, 0.1F, 0.3F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1072:3: note: in expansion of macro ‘reg_named_color’
1072 | reg_named_color("br8", 0.9F, 0.1F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1073:3: note: in expansion of macro ‘reg_named_color’
1073 | reg_named_color("br9", 1.F, 0.1F, 0.1F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1074:3: note: in expansion of macro ‘reg_named_color’
1074 | reg_named_color("pink", 1.F, 0.65F, 0.85F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1075:3: note: in expansion of macro ‘reg_named_color’
1075 | reg_named_color("firebrick", 0.698F, 0.13F, 0.13F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1076:3: note: in expansion of macro ‘reg_named_color’
1076 | reg_named_color("chocolate", 0.555F, 0.222F, 0.111F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1077:3: note: in expansion of macro ‘reg_named_color’
1077 | reg_named_color("brown", 0.65F, 0.32F, 0.17F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1078:3: note: in expansion of macro ‘reg_named_color’
1078 | reg_named_color("wheat", 0.99F, 0.82F, 0.65F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1079:3: note: in expansion of macro ‘reg_named_color’
1079 | reg_named_color("violet", 1.F, 0.5F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1088:5: note: in expansion of macro ‘reg_named_color’
1088 | reg_named_color(name, a / 99.F, a / 99.F, a / 99.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1091:3: note: in expansion of macro ‘reg_named_color’
1091 | reg_named_color("lightmagenta", 1.F, 0.2F, 0.8F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1105:5: note: in expansion of macro ‘reg_named_color’
1105 | reg_named_color(name,
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1121:5: note: in expansion of macro ‘reg_named_color’
1121 | reg_named_color(name,
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1137:5: note: in expansion of macro ‘reg_named_color’
1137 | reg_named_color(name,
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1155:5: note: in expansion of macro ‘reg_named_color’
1155 | reg_named_color(name,
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1161:3: note: in expansion of macro ‘reg_named_color’
1161 | reg_named_color("density", 0.1F, 0.1F, 0.6F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1168:5: note: in expansion of macro ‘reg_named_color’
1168 | reg_named_color(name, a / 99.F, a / 99.F, a / 99.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1183:5: note: in expansion of macro ‘reg_named_color’
1183 | reg_named_color(name,
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1189:3: note: in expansion of macro ‘reg_named_color’
1189 | reg_named_color("paleyellow", 1.F, 1.F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1190:3: note: in expansion of macro ‘reg_named_color’
1190 | reg_named_color("aquamarine", 0.5F, 1.F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1191:3: note: in expansion of macro ‘reg_named_color’
1191 | reg_named_color("deepsalmon", 1.F, 0.5F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1192:3: note: in expansion of macro ‘reg_named_color’
1192 | reg_named_color("palegreen", 0.65F, 0.9F, 0.65F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1193:3: note: in expansion of macro ‘reg_named_color’
1193 | reg_named_color("deepolive", 0.6F, 0.6F, 0.1F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1194:3: note: in expansion of macro ‘reg_named_color’
1194 | reg_named_color("deeppurple", 0.6F, 0.1F, 0.6F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1195:3: note: in expansion of macro ‘reg_named_color’
1195 | reg_named_color("deepteal", 0.1F, 0.6F, 0.6F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1196:3: note: in expansion of macro ‘reg_named_color’
1196 | reg_named_color("lightblue", 0.75F, 0.75F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1197:3: note: in expansion of macro ‘reg_named_color’
1197 | reg_named_color("lightorange", 1.F, 0.8F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1198:3: note: in expansion of macro ‘reg_named_color’
1198 | reg_named_color("palecyan", 0.8F, 1.F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1199:3: note: in expansion of macro ‘reg_named_color’
1199 | reg_named_color("lightteal", 0.4F, 0.7F, 0.7F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1200:3: note: in expansion of macro ‘reg_named_color’
1200 | reg_named_color("splitpea", 0.52F, 0.75F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1201:3: note: in expansion of macro ‘reg_named_color’
1201 | reg_named_color("raspberry", 0.7F, 0.3F, 0.4F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1202:3: note: in expansion of macro ‘reg_named_color’
1202 | reg_named_color("sand", 0.72F, 0.55F, 0.3F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1203:3: note: in expansion of macro ‘reg_named_color’
1203 | reg_named_color("smudge", 0.55F, 0.7F, 0.4F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1204:3: note: in expansion of macro ‘reg_named_color’
1204 | reg_named_color("violetpurple", 0.55F, 0.25F, 0.6F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1205:3: note: in expansion of macro ‘reg_named_color’
1205 | reg_named_color("dirtyviolet", 0.7F, 0.5F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1208:3: note: in expansion of macro ‘reg_named_color’
1208 | reg_named_color("_deepsalmon", 1.F, 0.42F, 0.42F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1210:3: note: in expansion of macro ‘reg_named_color’
1210 | reg_named_color("lightpink", 1.F, 0.75F, 0.87F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1211:3: note: in expansion of macro ‘reg_named_color’
1211 | reg_named_color("greencyan", 0.25F, 1.F, 0.75F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1212:3: note: in expansion of macro ‘reg_named_color’
1212 | reg_named_color("limon", 0.75F, 1.F, 0.25F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1213:3: note: in expansion of macro ‘reg_named_color’
1213 | reg_named_color("skyblue", 0.2F, 0.5F, 0.8F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1214:3: note: in expansion of macro ‘reg_named_color’
1214 | reg_named_color("bluewhite", 0.85F, 0.85F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1215:3: note: in expansion of macro ‘reg_named_color’
1215 | reg_named_color("warmpink", 0.85F, 0.2F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1216:3: note: in expansion of macro ‘reg_named_color’
1216 | reg_named_color("darksalmon", 0.73F, 0.55F, 0.52F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1217:3: note: in expansion of macro ‘reg_named_color’
1217 | reg_named_color("helium", 0.850980392F, 1.F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1218:3: note: in expansion of macro ‘reg_named_color’
1218 | reg_named_color("lithium", 0.8F, 0.501960784F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1219:3: note: in expansion of macro ‘reg_named_color’
1219 | reg_named_color("beryllium", 0.760784314F, 1.F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1220:3: note: in expansion of macro ‘reg_named_color’
1220 | reg_named_color("boron", 1.F, 0.709803922F, 0.709803922F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1221:3: note: in expansion of macro ‘reg_named_color’
1221 | reg_named_color("fluorine", 0.701960784F, 1.F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1222:3: note: in expansion of macro ‘reg_named_color’
1222 | reg_named_color("neon", 0.701960784F, 0.890196078F, 0.960784314F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1223:3: note: in expansion of macro ‘reg_named_color’
1223 | reg_named_color("sodium", 0.670588235F, 0.360784314F, 0.949019608F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1224:3: note: in expansion of macro ‘reg_named_color’
1224 | reg_named_color("magnesium", 0.541176471F, 1.F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1225:3: note: in expansion of macro ‘reg_named_color’
1225 | reg_named_color("aluminum", 0.749019608F, 0.650980392F, 0.650980392F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1226:3: note: in expansion of macro ‘reg_named_color’
1226 | reg_named_color("silicon", 0.941176471F, 0.784313725F, 0.62745098F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1227:3: note: in expansion of macro ‘reg_named_color’
1227 | reg_named_color("phosphorus", 1.F, 0.501960784F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1228:3: note: in expansion of macro ‘reg_named_color’
1228 | reg_named_color("chlorine", 0.121568627F, 0.941176471F, 0.121568627F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1229:3: note: in expansion of macro ‘reg_named_color’
1229 | reg_named_color("argon", 0.501960784F, 0.819607843F, 0.890196078F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1230:3: note: in expansion of macro ‘reg_named_color’
1230 | reg_named_color("potassium", 0.560784314F, 0.250980392F, 0.831372549F);
| ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Vector.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1231:3: note: in expansion of macro ‘reg_named_color’
1231 | reg_named_color("calcium", 0.239215686F, 1.F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1232:3: note: in expansion of macro ‘reg_named_color’
1232 | reg_named_color("scandium", 0.901960784F, 0.901960784F, 0.901960784F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1233:3: note: in expansion of macro ‘reg_named_color’
1233 | reg_named_color("titanium", 0.749019608F, 0.760784314F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1234:3: note: in expansion of macro ‘reg_named_color’
1234 | reg_named_color("vanadium", 0.650980392F, 0.650980392F, 0.670588235F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1235:3: note: in expansion of macro ‘reg_named_color’
1235 | reg_named_color("chromium", 0.541176471F, 0.6F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1236:3: note: in expansion of macro ‘reg_named_color’
1236 | reg_named_color("manganese", 0.611764706F, 0.478431373F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1237:3: note: in expansion of macro ‘reg_named_color’
1237 | reg_named_color("iron", 0.878431373F, 0.4F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1238:3: note: in expansion of macro ‘reg_named_color’
1238 | reg_named_color("cobalt", 0.941176471F, 0.564705882F, 0.62745098F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1239:3: note: in expansion of macro ‘reg_named_color’
1239 | reg_named_color("nickel", 0.31372549F, 0.815686275F, 0.31372549F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1240:3: note: in expansion of macro ‘reg_named_color’
1240 | reg_named_color("copper", 0.784313725F, 0.501960784F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1241:3: note: in expansion of macro ‘reg_named_color’
1241 | reg_named_color("zinc", 0.490196078F, 0.501960784F, 0.690196078F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1242:3: note: in expansion of macro ‘reg_named_color’
1242 | reg_named_color("gallium", 0.760784314F, 0.560784314F, 0.560784314F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1243:3: note: in expansion of macro ‘reg_named_color’
1243 | reg_named_color("germanium", 0.4F, 0.560784314F, 0.560784314F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1244:3: note: in expansion of macro ‘reg_named_color’
1244 | reg_named_color("arsenic", 0.741176471F, 0.501960784F, 0.890196078F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1245:3: note: in expansion of macro ‘reg_named_color’
1245 | reg_named_color("selenium", 1.F, 0.631372549F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1246:3: note: in expansion of macro ‘reg_named_color’
1246 | reg_named_color("bromine", 0.650980392F, 0.160784314F, 0.160784314F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1247:3: note: in expansion of macro ‘reg_named_color’
1247 | reg_named_color("krypton", 0.360784314F, 0.721568627F, 0.819607843F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1248:3: note: in expansion of macro ‘reg_named_color’
1248 | reg_named_color("rubidium", 0.439215686F, 0.180392157F, 0.690196078F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1249:3: note: in expansion of macro ‘reg_named_color’
1249 | reg_named_color("strontium", 0.F, 1.F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1250:3: note: in expansion of macro ‘reg_named_color’
1250 | reg_named_color("yttrium", 0.580392157F, 1.F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1251:3: note: in expansion of macro ‘reg_named_color’
1251 | reg_named_color("zirconium", 0.580392157F, 0.878431373F, 0.878431373F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1252:3: note: in expansion of macro ‘reg_named_color’
1252 | reg_named_color("niobium", 0.450980392F, 0.760784314F, 0.788235294F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1253:3: note: in expansion of macro ‘reg_named_color’
1253 | reg_named_color("molybdenum", 0.329411765F, 0.709803922F, 0.709803922F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1254:3: note: in expansion of macro ‘reg_named_color’
1254 | reg_named_color("technetium", 0.231372549F, 0.619607843F, 0.619607843F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1255:3: note: in expansion of macro ‘reg_named_color’
1255 | reg_named_color("ruthenium", 0.141176471F, 0.560784314F, 0.560784314F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1256:3: note: in expansion of macro ‘reg_named_color’
1256 | reg_named_color("rhodium", 0.039215686F, 0.490196078F, 0.549019608F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1257:3: note: in expansion of macro ‘reg_named_color’
1257 | reg_named_color("palladium", 0.F, 0.411764706F, 0.521568627F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1258:3: note: in expansion of macro ‘reg_named_color’
1258 | reg_named_color("silver", 0.752941176F, 0.752941176F, 0.752941176F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1259:3: note: in expansion of macro ‘reg_named_color’
1259 | reg_named_color("cadmium", 1.F, 0.850980392F, 0.560784314F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1260:3: note: in expansion of macro ‘reg_named_color’
1260 | reg_named_color("indium", 0.650980392F, 0.458823529F, 0.450980392F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1261:3: note: in expansion of macro ‘reg_named_color’
1261 | reg_named_color("tin", 0.4F, 0.501960784F, 0.501960784F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1262:3: note: in expansion of macro ‘reg_named_color’
1262 | reg_named_color("antimony", 0.619607843F, 0.388235294F, 0.709803922F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1263:3: note: in expansion of macro ‘reg_named_color’
1263 | reg_named_color("tellurium", 0.831372549F, 0.478431373F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1264:3: note: in expansion of macro ‘reg_named_color’
1264 | reg_named_color("iodine", 0.580392157F, 0.F, 0.580392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1265:3: note: in expansion of macro ‘reg_named_color’
1265 | reg_named_color("xenon", 0.258823529F, 0.619607843F, 0.690196078F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1266:3: note: in expansion of macro ‘reg_named_color’
1266 | reg_named_color("cesium", 0.341176471F, 0.090196078F, 0.560784314F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1267:3: note: in expansion of macro ‘reg_named_color’
1267 | reg_named_color("barium", 0.F, 0.788235294F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1268:3: note: in expansion of macro ‘reg_named_color’
1268 | reg_named_color("lanthanum", 0.439215686F, 0.831372549F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1269:3: note: in expansion of macro ‘reg_named_color’
1269 | reg_named_color("cerium", 1.F, 1.F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1270:3: note: in expansion of macro ‘reg_named_color’
1270 | reg_named_color("praseodymium", 0.850980392F, 1.F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1271:3: note: in expansion of macro ‘reg_named_color’
1271 | reg_named_color("neodymium", 0.780392157F, 1.F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1272:3: note: in expansion of macro ‘reg_named_color’
1272 | reg_named_color("promethium", 0.639215686F, 1.F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1273:3: note: in expansion of macro ‘reg_named_color’
1273 | reg_named_color("samarium", 0.560784314F, 1.F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1274:3: note: in expansion of macro ‘reg_named_color’
1274 | reg_named_color("europium", 0.380392157F, 1.F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1275:3: note: in expansion of macro ‘reg_named_color’
1275 | reg_named_color("gadolinium", 0.270588235F, 1.F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1276:3: note: in expansion of macro ‘reg_named_color’
1276 | reg_named_color("terbium", 0.188235294F, 1.F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1277:3: note: in expansion of macro ‘reg_named_color’
1277 | reg_named_color("dysprosium", 0.121568627F, 1.F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1278:3: note: in expansion of macro ‘reg_named_color’
1278 | reg_named_color("holmium", 0.F, 1.F, 0.611764706F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1279:3: note: in expansion of macro ‘reg_named_color’
1279 | reg_named_color("erbium", 0.F, 0.901960784F, 0.458823529F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1280:3: note: in expansion of macro ‘reg_named_color’
1280 | reg_named_color("thulium", 0.F, 0.831372549F, 0.321568627F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1281:3: note: in expansion of macro ‘reg_named_color’
1281 | reg_named_color("ytterbium", 0.F, 0.749019608F, 0.219607843F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1282:3: note: in expansion of macro ‘reg_named_color’
1282 | reg_named_color("lutetium", 0.F, 0.670588235F, 0.141176471F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1283:3: note: in expansion of macro ‘reg_named_color’
1283 | reg_named_color("hafnium", 0.301960784F, 0.760784314F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1284:3: note: in expansion of macro ‘reg_named_color’
1284 | reg_named_color("tantalum", 0.301960784F, 0.650980392F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1285:3: note: in expansion of macro ‘reg_named_color’
1285 | reg_named_color("tungsten", 0.129411765F, 0.580392157F, 0.839215686F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1286:3: note: in expansion of macro ‘reg_named_color’
1286 | reg_named_color("rhenium", 0.149019608F, 0.490196078F, 0.670588235F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1287:3: note: in expansion of macro ‘reg_named_color’
1287 | reg_named_color("osmium", 0.149019608F, 0.4F, 0.588235294F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1288:3: note: in expansion of macro ‘reg_named_color’
1288 | reg_named_color("iridium", 0.090196078F, 0.329411765F, 0.529411765F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1289:3: note: in expansion of macro ‘reg_named_color’
1289 | reg_named_color("platinum", 0.815686275F, 0.815686275F, 0.878431373F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1290:3: note: in expansion of macro ‘reg_named_color’
1290 | reg_named_color("gold", 1.F, 0.819607843F, 0.137254902F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1291:3: note: in expansion of macro ‘reg_named_color’
1291 | reg_named_color("mercury", 0.721568627F, 0.721568627F, 0.815686275F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1292:3: note: in expansion of macro ‘reg_named_color’
1292 | reg_named_color("thallium", 0.650980392F, 0.329411765F, 0.301960784F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1293:3: note: in expansion of macro ‘reg_named_color’
1293 | reg_named_color("lead", 0.341176471F, 0.349019608F, 0.380392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1294:3: note: in expansion of macro ‘reg_named_color’
1294 | reg_named_color("bismuth", 0.619607843F, 0.309803922F, 0.709803922F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1295:3: note: in expansion of macro ‘reg_named_color’
1295 | reg_named_color("polonium", 0.670588235F, 0.360784314F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1296:3: note: in expansion of macro ‘reg_named_color’
1296 | reg_named_color("astatine", 0.458823529F, 0.309803922F, 0.270588235F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1297:3: note: in expansion of macro ‘reg_named_color’
1297 | reg_named_color("radon", 0.258823529F, 0.509803922F, 0.588235294F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1298:3: note: in expansion of macro ‘reg_named_color’
1298 | reg_named_color("francium", 0.258823529F, 0.F, 0.4F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1299:3: note: in expansion of macro ‘reg_named_color’
1299 | reg_named_color("radium", 0.F, 0.490196078F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1300:3: note: in expansion of macro ‘reg_named_color’
1300 | reg_named_color("actinium", 0.439215686F, 0.670588235F, 0.980392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1301:3: note: in expansion of macro ‘reg_named_color’
1301 | reg_named_color("thorium", 0.F, 0.729411765F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1302:3: note: in expansion of macro ‘reg_named_color’
1302 | reg_named_color("protactinium", 0.F, 0.631372549F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1303:3: note: in expansion of macro ‘reg_named_color’
1303 | reg_named_color("uranium", 0.F, 0.560784314F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1304:3: note: in expansion of macro ‘reg_named_color’
1304 | reg_named_color("neptunium", 0.F, 0.501960784F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1305:3: note: in expansion of macro ‘reg_named_color’
1305 | reg_named_color("plutonium", 0.F, 0.419607843F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1306:3: note: in expansion of macro ‘reg_named_color’
1306 | reg_named_color("americium", 0.329411765F, 0.360784314F, 0.949019608F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1307:3: note: in expansion of macro ‘reg_named_color’
1307 | reg_named_color("curium", 0.470588235F, 0.360784314F, 0.890196078F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1308:3: note: in expansion of macro ‘reg_named_color’
1308 | reg_named_color("berkelium", 0.541176471F, 0.309803922F, 0.890196078F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1309:3: note: in expansion of macro ‘reg_named_color’
1309 | reg_named_color("californium", 0.631372549F, 0.211764706F, 0.831372549F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1310:3: note: in expansion of macro ‘reg_named_color’
1310 | reg_named_color("einsteinium", 0.701960784F, 0.121568627F, 0.831372549F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1311:3: note: in expansion of macro ‘reg_named_color’
1311 | reg_named_color("fermium", 0.701960784F, 0.121568627F, 0.729411765F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1312:3: note: in expansion of macro ‘reg_named_color’
1312 | reg_named_color("mendelevium", 0.701960784F, 0.050980392F, 0.650980392F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1313:3: note: in expansion of macro ‘reg_named_color’
1313 | reg_named_color("nobelium", 0.741176471F, 0.050980392F, 0.529411765F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1314:3: note: in expansion of macro ‘reg_named_color’
1314 | reg_named_color("lawrencium", 0.780392157F, 0.F, 0.4F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1315:3: note: in expansion of macro ‘reg_named_color’
1315 | reg_named_color("rutherfordium", 0.8F, 0.F, 0.349019608F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1316:3: note: in expansion of macro ‘reg_named_color’
1316 | reg_named_color("dubnium", 0.819607843F, 0.F, 0.309803922F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1317:3: note: in expansion of macro ‘reg_named_color’
1317 | reg_named_color("seaborgium", 0.850980392F, 0.F, 0.270588235F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1318:3: note: in expansion of macro ‘reg_named_color’
1318 | reg_named_color("bohrium", 0.878431373F, 0.F, 0.219607843F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1319:3: note: in expansion of macro ‘reg_named_color’
1319 | reg_named_color("hassium", 0.901960784F, 0.F, 0.180392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1320:3: note: in expansion of macro ‘reg_named_color’
1320 | reg_named_color("meitnerium", 0.921568627F, 0.F, 0.149019608F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1321:3: note: in expansion of macro ‘reg_named_color’
1321 | reg_named_color("deuterium", 0.9F, 0.9F, 0.9F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1322:3: note: in expansion of macro ‘reg_named_color’
1322 | reg_named_color("lonepair", 0.5F, 0.5F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1323:3: note: in expansion of macro ‘reg_named_color’
1323 | reg_named_color("pseudoatom", 0.9F, 0.9F, 0.9F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘void ColorUpdateFromLut(PyMOLGlobals*, int)’:
layer1/Color.cpp:1695:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1695 | for(i = 0; i < I->Color.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp:1699:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1699 | if(index < I->Color.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘const float* ColorGet(PyMOLGlobals*, int)’:
layer1/Color.cpp:1808:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1808 | if((index >= 0) && (index < I->Color.size())) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘const float* ColorGetRaw(PyMOLGlobals*, int)’:
layer1/Color.cpp:1835:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1835 | if((index >= 0) && (index < I->Color.size())) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorGetEncoded(PyMOLGlobals*, int, float*)’:
layer1/Color.cpp:1853:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1853 | if((index >= 0) && (index < I->Color.size())) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitiveName(PyMOLGlobals*, const Sequence&, const char*) [with Sequence = std::vector<ExtRec>]’:
layer1/Color.cpp:304:35: required from here
layer1/Color.cpp:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
245 | for (int a = 0; a < seq.size(); ++a) {
| ~~^~~~~~~~~~~~
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitiveName(PyMOLGlobals*, const Sequence&, const char*) [with Sequence = std::vector<ColorRec>]’:
layer1/Color.cpp:626:38: required from here
layer1/Color.cpp:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitivePrefix(PyMOLGlobals*, const Sequence&, const char*, int&) [with Sequence = std::vector<ColorRec>]’:
layer1/Color.cpp:741:42: required from here
layer1/Color.cpp:275:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
275 | for (int a = 0; a < seq.size(); ++a) {
| ~~^~~~~~~~~~~~
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitivePrefix(PyMOLGlobals*, const Sequence&, const char*, int&) [with Sequence = std::vector<ExtRec>]’:
layer1/Color.cpp:743:54: required from here
layer1/Color.cpp:275:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Word.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Ortho.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Map.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ccealignmodule.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from include/tnt/tnt.h:49,
from layer0/ccealignmodule.cpp:39:
include/tnt/tnt_array2d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Array2D<T>&)’:
include/tnt/tnt_array2d_utils.h:62:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
62 | for (int i=0; i<M; i++)
| ^~~
include/tnt/tnt_array2d_utils.h:68:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
68 | A = B;
| ^
In file included from include/tnt/tnt.h:50:
include/tnt/tnt_array3d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Array3D<T>&)’:
include/tnt/tnt_array3d_utils.h:47:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
47 | for (int i=0; i<M; i++)
| ^~~
include/tnt/tnt_array3d_utils.h:52:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
52 | A = B;
| ^
In file included from include/tnt/tnt.h:56:
include/tnt/tnt_fortran_array2d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Fortran_Array2D<T>&)’:
include/tnt/tnt_fortran_array2d_utils.h:61:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
61 | for (int i=1; i<=M; i++)
| ^~~
include/tnt/tnt_fortran_array2d_utils.h:67:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
67 | A = B;
| ^
In file included from include/tnt/tnt.h:57:
include/tnt/tnt_fortran_array3d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Fortran_Array3D<T>&)’:
include/tnt/tnt_fortran_array3d_utils.h:65:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
65 | for (int i=1; i<=M; i++)
| ^~~
include/tnt/tnt_fortran_array3d_utils.h:70:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
70 | A = B;
| ^
layer1/Ortho.cpp:783:6: warning: ‘void OrthoKeyCmmd(PyMOLGlobals*, unsigned char)’ defined but not used [-Wunused-function]
783 | void OrthoKeyCmmd(PyMOLGlobals * G, unsigned char k)
| ^~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Match.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/string.h:535,
from /usr/include/python3.11/Python.h:26,
from layer0/os_python.h:34,
from layer1/Ortho.cpp:24:
In function ‘strcat’,
inlined from ‘OrthoSpecial(PyMOLGlobals*, int, int, int, int)’ at layer1/Ortho.cpp:332:13:
/usr/include/bits/string_fortified.h:130:33: warning: ‘strcat’ accessing 2199022993409 or more bytes at offsets [80, 261200] and [-2199022993328, 2199023516752] may overlap 1 byte at offset [80, 9223372036854775807] [-Wrestrict]
130 | return __builtin___strcat_chk (__dest, __src, __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strcat’,
inlined from ‘OrthoSpecial(PyMOLGlobals*, int, int, int, int)’ at layer1/Ortho.cpp:349:13:
/usr/include/bits/string_fortified.h:130:33: warning: ‘strcat’ accessing 2199022993409 or more bytes at offsets [80, 261200] and [-2199022993328, 2199023516752] may overlap 1 byte at offset [80, 9223372036854775807] [-Wrestrict]
130 | return __builtin___strcat_chk (__dest, __src, __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Matrix.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ShaderPrg.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/marching_cubes.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/marching_cubes.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/marching_cubes.cpp: In function ‘mc::Mesh mc::march(const Field&, float, bool)’:
layer0/marching_cubes.cpp:517:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare]
517 | for (int z = 0; z < zDim; ++z) {
| ~~^~~~~~
layer0/marching_cubes.cpp:550:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare]
550 | for (int z = 0; z < zEnd; ++z) {
| ~~^~~~~~
layer0/marching_cubes.cpp:603:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
603 | if (z == zEnd - 1) {
| ~~^~~~~~~~~~~
layer0/marching_cubes.cpp:608:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
608 | if (z == zEnd - 1) {
| ~~^~~~~~~~~~~
layer0/marching_cubes.cpp: In function ‘void mc::calculateNormals(Mesh&)’:
layer0/marching_cubes.cpp:681:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
681 | for (int i = 0; i < vertexCount; ++i) {
| ~~^~~~~~~~~~~~~
layer0/marching_cubes.cpp:686:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
686 | for (int i = 0; i < triangleCount; ++i) {
| ~~^~~~~~~~~~~~~~~
layer0/marching_cubes.cpp:720:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
720 | for (int i = 0; i < vertexCount; ++i) {
| ~~^~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/P.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/os_gl.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Sphere.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/P.cpp: In function ‘int WrapperObjectAssignSubScript(PyObject*, PyObject*, PyObject*)’:
layer1/P.cpp:825:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
825 | if (strlen(valstr) > ap->maxlen) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~
layer1/P.cpp:849:18: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
849 | if (valint == -1 && PyErr_Occurred())
| ~~~~~~~^~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Control.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/P.cpp: In function ‘int PAutoBlock(PyMOLGlobals*)’:
layer1/P.cpp:2288:27: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘long unsigned int’ [-Wsign-compare]
2288 | if (SavedThread[a].id == id) {
| ~~~~~~~~~~~~~~~~~~^~~~~
layer1/P.cpp: In function ‘int PIsGlutThread()’:
layer1/P.cpp:2314:39: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare]
2314 | return (PyThread_get_thread_ident() == P_glut_thread_id);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Basis.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/P.cpp: At global scope:
layer1/P.cpp:2422:13: warning: ‘void PLockAPIWhileBlocked(PyMOLGlobals*)’ defined but not used [-Wunused-function]
2422 | static void PLockAPIWhileBlocked(PyMOLGlobals * G)
| ^~~~~~~~~~~~~~~~~~~~
layer1/P.cpp:2411:13: warning: ‘void PUnlockAPIWhileBlocked(PyMOLGlobals*)’ defined but not used [-Wunused-function]
2411 | static void PUnlockAPIWhileBlocked(PyMOLGlobals * G)
| ^~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SceneRay.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Tetsurf.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/P.cpp: In function ‘PLabelAtomAlt(PyMOLGlobals*, AtomInfoType*, char const*, char const*, int)’:
layer1/P.cpp:322:12: warning: ‘strncpy’ specified bound 1024 equals destination size [-Wstringop-truncation]
322 | strncpy(label, origexpr, OrthoLineLength);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/vla.h:7,
from layer1/Symmetry.h:26,
from layer1/PyMOLObject.h:27,
from layer1/Scene.h:22,
from layer1/Control.cpp:25:
layer1/Control.cpp: In function ‘void ControlFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CControl’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/Control.cpp:410:3: note: in expansion of macro ‘DeleteP’
410 | DeleteP(G->Control);
| ^~~~~~~
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer0/Isosurf.h:24,
from layer0/Tetsurf.cpp:24:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer0/Tetsurf.cpp:802:18: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
100 | assert(sizeof...(pos) <= n_dim());
| ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = PointType; SizeTs = {int, int, int, int}]’:
layer0/Tetsurf.cpp:831:27: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’
layer0/Tetsurf.cpp:791:16: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’
layer0/Tetsurf.cpp:822:18: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/PConv.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Extrude.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/ButMode.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/PConv.cpp: In function ‘int PConvPyListToBitmask(PyObject*, int*, ov_size)’:
layer1/PConv.cpp:83:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
83 | for(int i = 0; i < ll; i++)
| ~~^~~~
layer1/PConv.cpp: In function ‘PyObject* PConvLabPosVecToPyList(const std::vector<LabPosType>&)’:
layer1/PConv.cpp:1194:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<LabPosType>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1194 | for (int a = 0; a < vec.size(); a++) {
| ~~^~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Texture.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SceneRender.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer1/ButMode.cpp:22:
layer1/ButMode.cpp: In function ‘void ButModeFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CButMode’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/ButMode.cpp:144:3: note: in expansion of macro ‘DeleteP’
144 | DeleteP(G->ButMode);
| ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Picking.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Extrude.cpp: In function ‘ExtrudeComputeTangents(CExtrude*)’:
layer1/Extrude.cpp:741:13: warning: ‘*_63’ may be used uninitialized [-Wmaybe-uninitialized]
741 | *(v1++) = *(v++); /* first segment */
| ^~~~~~
layer1/Extrude.cpp:742:13: warning: ‘MEM[(float *)_63 + 4B]’ may be used uninitialized [-Wmaybe-uninitialized]
742 | *(v1++) = *(v++);
| ^~~~~~
layer1/Extrude.cpp:743:13: warning: ‘MEM[(float *)_63 + 8B]’ may be used uninitialized [-Wmaybe-uninitialized]
743 | *(v1++) = *(v++);
| ^~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Pop.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/CGO.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Extrude.cpp: In function ‘ExtrudeCGOSurfaceTube(CExtrude const*, CGO*, cCylCap, float const*, bool, int)’:
layer1/Extrude.cpp:948:31: warning: ‘start’ may be used uninitialized [-Wmaybe-uninitialized]
948 | if(color_override && (b > start) && (b < stop))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
layer1/Extrude.cpp:875:7: note: ‘start’ was declared here
875 | int start, stop;
| ^~~~~
layer1/Extrude.cpp:948:46: warning: ‘stop’ may be used uninitialized [-Wmaybe-uninitialized]
948 | if(color_override && (b > start) && (b < stop))
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
layer1/Extrude.cpp:875:14: note: ‘stop’ was declared here
875 | int start, stop;
| ^~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Tracker.cpp -o build/temp.linux-ppc64le-cpython-311/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Font.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer1/Pop.cpp:22:
layer1/Pop.cpp: In function ‘void PopFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CPop’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/Pop.cpp:54:3: note: in expansion of macro ‘DeleteP’
54 | DeleteP(G->Pop);
| ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/PyMOLObject.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUT.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/View.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/ScrollBar.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/CGO.cpp: In function ‘void CheckAttributesForUsage(const CGO*, AttribDataDesc&, AttribDataDesc&, CGO*, bool&)’:
layer1/CGO.cpp:10842:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
10842 | for (auto idx = 0; idx < attrIdx; ++idx){
| ~~~~^~~~~~~~~
layer1/CGO.cpp: In function ‘void PopulateOpsIntoStructuresForConversion(std::map<int, int>&, std::map<int, std::map<int, AttribOp*> >&, AttribDataDesc&, AttribDataDesc&, int&, bool)’:
layer1/CGO.cpp:10920:37: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
10920 | if (attrOp->incr_vertices != vertsperpickinfo){
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer1/CGO.cpp: In function ‘CGO* CGOConvertToShader(const CGO*, AttribDataDesc&, AttribDataDesc&, int, GenericBuffer<34962>::buffer_layout, bool, int*, int, int)’:
layer1/CGO.cpp:11222:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AttribDesc>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
11222 | for (auto idx = 0; idx < attrData.size(); ++idx){
| ~~~~^~~~~~~~~~~~~~~~~
layer1/CGO.cpp:11234:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AttribDesc>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
11234 | for (auto idx = 0; idx < attrData.size(); ++idx){
| ~~~~^~~~~~~~~~~~~~~~~
layer1/CGO.cpp:11243:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
11243 | for (int nxt = 0; nxt < attribOp->incr_vertices; ++nxt){
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Seq.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUT8x13.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUT9x15.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Wizard.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUTHel10.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUTHel12.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Ray.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUTHel18.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Seq.cpp: In function ‘int SeqFindRowCol(PyMOLGlobals*, int, int, int*, int*, int)’:
layer1/Seq.cpp:61:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
61 | if((char_num >= 0) && (char_num < row->ext_len) && (row->char2col)) {
| ~~~~~~~~~^~~~~~~~~~~~~~
layer1/Seq.cpp: In member function ‘virtual void CSeq::reshape(int, int)’:
layer1/Seq.cpp:114:28: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
114 | if(I->Row[a].ext_len > I->Size)
layer1/Seq.cpp: In member function ‘virtual void CSeq::draw(CGO*)’:
layer1/Seq.cpp:392:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
392 | if(max_len < row->ext_len)
| ~~~~~~~~^~~~~~~~~~~~~~
In file included from layer0/vla.h:7,
from layer1/Symmetry.h:26,
from layer1/PyMOLObject.h:27,
from layer1/Seq.h:21,
from layer1/Seq.cpp:22:
layer1/Seq.cpp: In function ‘void SeqFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CSeq’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/Seq.cpp:731:3: note: in expansion of macro ‘DeleteP’
731 | DeleteP(G->Seq);
| ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontType.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Seq.cpp: At global scope:
layer1/Seq.cpp:717:13: warning: ‘void SeqPurgeRowVLA(PyMOLGlobals*)’ defined but not used [-Wunused-function]
717 | static void SeqPurgeRowVLA(PyMOLGlobals * G)
| ^~~~~~~~~~~~~~
layer1/Wizard.cpp: In member function ‘virtual int CWizard::release(int, int, int, int)’:
layer1/Wizard.cpp:571:18: warning: unused variable ‘wiz’ [-Wunused-variable]
571 | if (auto wiz = WizardGet(G)) {
| ^~~
layer1/Wizard.cpp: In member function ‘virtual void CWizard::draw(CGO*)’:
layer1/Wizard.cpp:727:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
727 | else
| ^~~~
layer1/Wizard.cpp:729:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
729 | drawTopEdge();
| ^~~~~~~~~~~
In file included from layer1/Wizard.cpp:27:
layer1/Wizard.cpp: In function ‘void WizardFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CWizard’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/Wizard.cpp:845:3: note: in expansion of macro ‘DeleteP’
845 | DeleteP(G->Wizard);
| ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Setting.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Ray.cpp: In function ‘void RayRender(CRay*, unsigned int*, double, float, int, unsigned int*)’:
layer1/Ray.cpp:6065:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6065 | if(x_stop > width)
| ~~~~~~~^~~~~~~
layer1/Ray.cpp:6067:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6067 | if(y_stop > height)
| ~~~~~~~^~~~~~~~
layer1/Ray.cpp:6148:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6148 | for(y = 0; y < height; y++)
| ~~^~~~~~~~
layer1/Ray.cpp:6149:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6149 | for(x = 0; x < width; x++) {
| ~~^~~~~~~
layer1/Ray.cpp:6160:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6160 | if(x < (width - 1)) {
| ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6171:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6171 | if(y < (height - 1)) {
| ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6232:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6232 | for(y = 0; y < height; y++)
| ~~^~~~~~~~
layer1/Ray.cpp:6233:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6233 | for(x = 0; x < width; x++) {
| ~~^~~~~~~
layer1/Ray.cpp:6243:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6243 | if(x < (width - 1)) {
| ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6255:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6255 | if(y < (height - 1)) {
| ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6306:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6306 | for(y = 0; y < height; y++){
| ~~^~~~~~~~
layer1/Ray.cpp:6326:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6326 | for(x = 0; x < width; x++) {
| ~~^~~~~~~
layer1/Ray.cpp:6345:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6345 | if(x < (width - 1)) {
| ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6359:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6359 | if(y < (height - 1)) {
| ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6373:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6373 | if(x && (y < (height - 1))) {
| ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6380:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6380 | if(y && (x < (width - 1))) {
| ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6387:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6387 | if((y < (height - 1)) && (x < (width - 1))) {
| ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6387:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6387 | if((y < (height - 1)) && (x < (width - 1))) {
| ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6543:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6543 | for(y = 0; y < height; y++) {
| ~~^~~~~~~~
layer1/Ray.cpp:6544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6544 | for(x = 0; x < width; x++) {
| ~~^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/MmodTyping.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/AssemblyHelpers.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Setting.cpp: In function ‘void SettingGenerateSideEffects(PyMOLGlobals*, int, const char*, int, int)’:
layer1/Setting.cpp:2070:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
2070 | if (SettingGetGlobal_b(G, cSetting_precomputed_lighting))
| ^~
layer1/Setting.cpp:2072:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
2072 | SceneInvalidate(G);
| ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/MmtfMoleculeReader.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/AtomInfo.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/MmtfMoleculeReader.cpp: In function ‘ObjectMolecule* ObjectMoleculeReadMmtfStr(PyMOLGlobals*, ObjectMolecule*, const char*, int, int, int, int, int, int)’:
layer2/MmtfMoleculeReader.cpp:171:18: warning: the address of ‘MMTF_container::unitCell’ will never be NULL [-Waddress]
171 | if (container->unitCell &&
| ~~~~~~~~~~~^~~~~~~~
In file included from layer2/MmtfMoleculeReader.cpp:14:
contrib/mmtf-c/mmtf_parser.h:104:11: note: ‘MMTF_container::unitCell’ declared here
104 | float unitCell[6];
| ^~~~~~~~
layer2/MmtfMoleculeReader.cpp:223:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
223 | for (int l = 0, offset = atomIndex; l < group->bondAtomListCount / 2; ++l) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/cassert:44,
from layer0/vla.h:10,
from layer1/Symmetry.h:26,
from layer1/PyMOLObject.h:27,
from layer2/ObjectMolecule.h:24,
from layer2/MmtfMoleculeReader.cpp:9:
layer2/MmtfMoleculeReader.cpp:276:34: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
276 | assert(cset->IdxToAtm.size() == cset->getNIndex());
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
layer2/MmtfMoleculeReader.cpp:287:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
287 | for (int l = 0; l < container->bondAtomListCount / 2; ++l) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Ray.cpp: In function ‘RayRenderVRML2(_CRay*, int, int, char**, float, float, float, float, float)’:
layer1/Ray.cpp:1535:20: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=]
1535 | "%s"
| ^~
......
1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
| ~~~~~~~~
layer1/Ray.cpp:1530:18: note: ‘*__sprintfieee128’ output between 116 and 3302 bytes into a destination of size 1024
1530 | sprintf(buffer,
| ~~~~~~~^~~~~~~~
1531 | "Transform {\n"
| ~~~~~~~~~~~~~~~
1532 | " translation %8.6f %8.6f %8.6f\n"
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1533 | " rotation %8.6f %8.6f %8.6f %8.6f\n"
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1534 | " children [\n"
| ~~~~~~~~~~~~~~~
1535 | "%s"
| ~~~~
1536 | " ]\n"
| ~~~~~~
1537 | "}\n",
| ~~~~~~
1538 | vert2[0] - mid[0],
| ~~~~~~~~~~~~~~~~~~
1539 | vert2[1] - mid[1],
| ~~~~~~~~~~~~~~~~~~
1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/Mol2Typing.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/AtomInfo.cpp: In function ‘bool AtomResiFromResv(char*, size_t, int, char)’:
layer2/AtomInfo.cpp:817:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
817 | return snprintf(resi, size, "%d%c", resv, inscode) < size;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
layer2/AtomInfo.cpp:818:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
818 | return snprintf(resi, size, "%d", resv) < size;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
layer1/Ray.cpp: In function ‘RayTraceThread(_CRayThreadInfo*)’:
layer1/Ray.cpp:3606:39: warning: ‘hl’ may be used uninitialized [-Wmaybe-uninitialized]
3606 | compute_background_for_pixel(bkrd_uc, isOutsideInY,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
3607 | bg_image_mode, bg_image_tilesize, bg_rgb, bg_image_linear,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3608 | (unsigned char*) T->bkrd_data, T->bgWidth, T->bgHeight,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3609 | x, wr, hl, hpixelx, orig_opaque_back );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Ray.cpp:3269:9: note: ‘hl’ was declared here
3269 | float hl;
| ^~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/MolV3000.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/AtomInfoHistory.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Rep.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectAlignment.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/BondTypeHistory.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Scene.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/CifFile.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer0/Map.h:24,
from layer1/Basis.h:20,
from layer1/Ray.h:24,
from layer1/PyMOLObject.h:24,
from layer2/ObjectAlignment.h:22,
from layer2/ObjectAlignment.cpp:27:
In function ‘copy3<float, float>(float const*, float*)void’,
inlined from ‘cgo::draw::line::line(float const*, float const*)’ at layer1/CGO.h:489:15,
inlined from ‘CGO::add<cgo::draw::line, float (&) [3], float (&) [3]>(float (&) [3], float (&) [3])float*’ at layer1/CGO.h:779:14,
inlined from ‘ObjectAlignment::update()’ at layer2/ObjectAlignment.cpp:974:54:
layer0/Vector.h:320:10: warning: ‘MEM[(float *)&gvert]’ may be used uninitialized [-Wmaybe-uninitialized]
320 | dst[0] = src[0];
| ~~~~~~~^~~~~~
layer2/ObjectAlignment.cpp: In member function ‘ObjectAlignment::update()’:
layer2/ObjectAlignment.cpp:926:39: note: ‘MEM[(float *)&gvert]’ was declared here
926 | float mean[3], vert[3], gvert[3];
| ^~~~~
In function ‘copy3<float, float>(float const*, float*)void’,
inlined from ‘cgo::draw::line::line(float const*, float const*)’ at layer1/CGO.h:489:15,
inlined from ‘CGO::add<cgo::draw::line, float (&) [3], float (&) [3]>(float (&) [3], float (&) [3])float*’ at layer1/CGO.h:779:14,
inlined from ‘ObjectAlignment::update()’ at layer2/ObjectAlignment.cpp:974:54:
layer0/Vector.h:321:10: warning: ‘MEM[(float *)&gvert + 4B]’ may be used uninitialized [-Wmaybe-uninitialized]
321 | dst[1] = src[1];
| ~~~~~~~^~~~~~
layer2/ObjectAlignment.cpp: In member function ‘ObjectAlignment::update()’:
layer2/ObjectAlignment.cpp:926:39: note: ‘MEM[(float *)&gvert + 4B]’ was declared here
926 | float mean[3], vert[3], gvert[3];
| ^~~~~
In function ‘copy3<float, float>(float const*, float*)void’,
inlined from ‘cgo::draw::line::line(float const*, float const*)’ at layer1/CGO.h:489:15,
inlined from ‘CGO::add<cgo::draw::line, float (&) [3], float (&) [3]>(float (&) [3], float (&) [3])float*’ at layer1/CGO.h:779:14,
inlined from ‘ObjectAlignment::update()’ at layer2/ObjectAlignment.cpp:974:54:
layer0/Vector.h:322:10: warning: ‘MEM[(float *)&gvert + 8B]’ may be used uninitialized [-Wmaybe-uninitialized]
322 | dst[2] = src[2];
| ~~~~~~~^~~~~~
layer2/ObjectAlignment.cpp: In member function ‘ObjectAlignment::update()’:
layer2/ObjectAlignment.cpp:926:39: note: ‘MEM[(float *)&gvert + 8B]’ was declared here
926 | float mean[3], vert[3], gvert[3];
| ^~~~~
layer1/Scene.cpp: In function ‘int SceneViewEqual(float*, float*)’:
layer1/Scene.cpp:127:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
127 | for(i = 0; i < cSceneViewSize; i++) {
| ~~^~~~~~~~~~~~~~~~
layer1/Scene.cpp: In function ‘void SceneFree(PyMOLGlobals*)’:
layer1/Scene.cpp:4071:3: warning: deleting object of polymorphic class type ‘CScene’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
4071 | delete G->Scene;
| ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectCGO.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectCGO.cpp: In function ‘PyObject* ObjectCGOAllStatesAsPyList(ObjectCGO*)’:
layer2/ObjectCGO.cpp:53:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
53 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In function ‘int ObjectCGOAllStatesFromPyList(ObjectCGO*, PyObject*, int)’:
layer2/ObjectCGO.cpp:104:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
104 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In member function ‘virtual void ObjectCGO::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectCGO.cpp:205:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
205 | if((state >= 0) && (state < I->State.size())) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In member function ‘virtual void ObjectCGO::render(RenderInfo*)’:
layer2/ObjectCGO.cpp:488:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
488 | if (!ray)
| ^~
layer2/ObjectCGO.cpp:490:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
490 | ObjectCGORenderState(G, pass, ray, I, info, sobj, color, ramp, use_shader, cgo_lighting);
| ^~~~~~~~~~~~~~~~~~~~
In file included from layer2/ObjectCGO.cpp:24:
layer2/ObjectCGO.h: In copy constructor ‘ObjectCGOState::ObjectCGOState(const ObjectCGOState&)’:
layer2/ObjectCGO.h:28:17: warning: ‘ObjectCGOState::G’ will be initialized after [-Wreorder]
28 | PyMOLGlobals* G;
| ^
layer2/ObjectCGO.h:27:25: warning: ‘pymol::cache_ptr<CGO> ObjectCGOState::renderCGO’ [-Wreorder]
27 | pymol::cache_ptr<CGO> renderCGO;
| ^~~~~~~~~
layer2/ObjectCGO.cpp:517:1: warning: when initialized here [-Wreorder]
517 | ObjectCGOState::ObjectCGOState(const ObjectCGOState& other)
| ^~~~~~~~~~~~~~
layer2/ObjectCGO.h:29:58: warning: ‘ObjectCGOState::hasOpaque’ will be initialized after [-Wreorder]
29 | bool renderWithShaders, hasTransparency, cgo_lighting, hasOpaque;
| ^~~~~~~~~
layer2/ObjectCGO.h:29:44: warning: ‘bool ObjectCGOState::cgo_lighting’ [-Wreorder]
29 | bool renderWithShaders, hasTransparency, cgo_lighting, hasOpaque;
| ^~~~~~~~~~~~
layer2/ObjectCGO.cpp:517:1: warning: when initialized here [-Wreorder]
517 | ObjectCGOState::ObjectCGOState(const ObjectCGOState& other)
| ^~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGOFromCGO(PyMOLGlobals*, ObjectCGO*, CGO*, int)’:
layer2/ObjectCGO.cpp:602:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
602 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGODefine(PyMOLGlobals*, ObjectCGO*, PyObject*, int)’:
layer2/ObjectCGO.cpp:667:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
667 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGOFromFloatArray(PyMOLGlobals*, ObjectCGO*, float*, int, int, int)’:
layer2/ObjectCGO.cpp:725:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
725 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/CifMoleculeReader.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectCallback.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/CifMoleculeReader.cpp: In member function ‘void seqvec_t::set(int, const char*)’:
layer2/CifMoleculeReader.cpp:108:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
108 | if (i > size())
| ~~^~~~~~~~
layer2/CifMoleculeReader.cpp: In member function ‘const char* seqvec_t::get(int) const’:
layer2/CifMoleculeReader.cpp:114:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
114 | if (i < 1 || i > size())
| ~~^~~~~~~~
layer2/CifMoleculeReader.cpp: In function ‘CoordSet** read_pdbx_struct_assembly(PyMOLGlobals*, const pymol::cif_data*, const AtomInfoType*, const CoordSet*, const char*)’:
layer2/CifMoleculeReader.cpp:827:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
827 | while (j < c_src_len * c_it->size()) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Shaker.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectDist.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SceneMouse.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/SceneMouse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SymOp.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/SymOp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/SymOp.cpp: In member function ‘pymol::SymOp::to_string[abi:cxx11]() const’:
layer1/SymOp.cpp:37:32: warning: ‘%d’ directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=]
37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
| ^~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
| ^~~~~~~~~~~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
In file included from /usr/include/stdio.h:906,
from /usr/include/c++/13/cstdio:42,
from /usr/include/c++/13/ext/string_conversions.h:45,
from /usr/include/c++/13/bits/basic_string.h:4072,
from /usr/include/c++/13/string:54,
from layer1/SymOp.h:9,
from layer1/SymOp.cpp:7:
In function ‘*__snprintfieee128’,
inlined from ‘pymol::SymOp::to_string[abi:cxx11]() const’ at layer1/SymOp.cpp:37:16:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chkieee128’ output between 6 and 17 bytes into a destination of size 8
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SymOpPConv.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/SymOpPConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectDist.cpp: In function ‘int ObjectDistMoveWithObject(ObjectDist*, ObjectMolecule*)’:
layer2/ObjectDist.cpp:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
111 | for (int i=0; i<I->DSet.size(); i++) {
| ~^~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘void ObjectDistUpdateExtents(ObjectDist*)’:
layer2/ObjectDist.cpp:136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
136 | for(int a = 0; a < I->DSet.size(); a++) {
| ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘PyObject* ObjectDistDSetAsPyList(ObjectDist*)’:
layer2/ObjectDist.cpp:148:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
148 | for(int a = 0; a < I->DSet.size(); a++) {
| ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘int ObjectDistDSetFromPyList(ObjectDist*, PyObject*)’:
layer2/ObjectDist.cpp:165:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
165 | for(int a = 0; a < I->DSet.size(); a++) {
| ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In member function ‘virtual void ObjectDist::update()’:
layer2/ObjectDist.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
241 | for(int a = 0; a < I->DSet.size(); a++)
| ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘void ObjectDistInvalidateRep(ObjectDist*, cRep_t)’:
layer2/ObjectDist.cpp:257:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
257 | for(a = 0; a < I->DSet.size(); a++)
| ~~^~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SymOpTools.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/SymOpTools.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/SceneMouse.cpp: In function ‘void SceneClickPickBond(PyMOLGlobals*, int, int, int, const NamedPicking&)’:
layer1/SceneMouse.cpp:513:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
513 | if (atIndex == LastPicked.src.index)
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/COLLADA.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer2/CifMoleculeReader.cpp:31:
layer2/CifBondDict.h: In function ‘read_chem_comp_bond_dict(pymol::cif_data const*, bond_dict_t&)’:
layer2/CifBondDict.h:93:12: warning: ‘strncpy’ specified bound 8 equals destination size [-Wstringop-truncation]
93 | strncpy(s, s_, sizeof(s));
| ^
layer1/SceneMouse.cpp: In function ‘SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, NamedPicking const&, int, bool)’:
layer1/SceneMouse.cpp:455:32: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=]
455 | " You clicked %s -> (%s)\n", buffer.c_str(), name ENDFB(G);
| ^~ ~~~~
In file included from /usr/include/stdio.h:906,
from /usr/include/c++/13/cstdio:42,
from /usr/include/c++/13/ext/string_conversions.h:45,
from /usr/include/c++/13/bits/basic_string.h:4072,
from /usr/include/c++/13/string:54,
from /usr/include/c++/13/bits/locale_classes.h:40,
from /usr/include/c++/13/bits/ios_base.h:41,
from /usr/include/c++/13/ios:44,
from /usr/include/c++/13/ostream:40,
from include/pymol/zstring_view.h:12,
from layer1/SceneMouse.h:4,
from layer1/SceneMouse.cpp:1:
In function ‘*__snprintfieee128’,
inlined from ‘SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, NamedPicking const&, int, bool)’ at layer1/SceneMouse.cpp:454:11:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chkieee128’ output 21 or more bytes (assuming 276) into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Symmetry.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/CifBondDict.h: In member function ‘bond_dict_t::get(PyMOLGlobals*, char const*, bool)’:
layer2/CifBondDict.h:93:12: warning: ‘strncpy’ specified bound 8 equals destination size [-Wstringop-truncation]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectGadget.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/ScenePicking.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Text.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMesh.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectGadgetRamp.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In function ‘SceneRenderPickingMultiPick(PyMOLGlobals*, SceneUnitContext*, Multipick*, unsigned int)’,
inlined from ‘SceneRenderPicking(PyMOLGlobals*, int, int*, int, Picking*, int, int, Multipick*, SceneUnitContext*, unsigned int)’ at layer1/ScenePicking.cpp:314:32:
layer1/ScenePicking.cpp:249:7: warning: ‘previous.src.index’ may be used uninitialized [-Wmaybe-uninitialized]
249 | if (pik->src.index != previous.src.index ||
| ^~
layer1/ScenePicking.cpp: In function ‘SceneRenderPicking(PyMOLGlobals*, int, int*, int, Picking*, int, int, Multipick*, SceneUnitContext*, unsigned int)’:
layer1/ScenePicking.cpp:238:11: note: ‘previous.src.index’ was declared here
238 | Picking previous;
| ^~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDistLabel.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/CoordSet.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMesh.cpp: In member function ‘ObjectMesh::update()’:
layer2/ObjectMesh.cpp:502:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=]
502 | "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 50 and 305 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:535:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=]
535 | " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G);
| ^~
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 27 and 282 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectGroup.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMesh.cpp: In function ‘ObjectMeshDump(ObjectMesh*, char const*, int, int)’:
layer2/ObjectMesh.cpp:329:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
329 | " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
| ^~
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output 31 or more bytes (assuming 286) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer3/Executive.h:27,
from layer2/CoordSet.cpp:54:
layer2/CoordSet.cpp: In member function ‘int CoordSet::atmToIdx(int) const’:
layer2/CoordSet.cpp:134:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
134 | assert(atm < AtmToIdx.size());
| ~~~~^~~~~~~~~~~~~~~~~
layer2/CoordSet.cpp: In member function ‘void CoordSet::updateNonDiscreteAtmToIdx(unsigned int)’:
layer2/CoordSet.cpp:140:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
140 | assert(!Obj || natom == Obj->NAtom);
| ~~~~~~^~~~~~~~~~~~~
layer2/CoordSet.cpp:145:16: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘unsigned int’ [-Wsign-compare]
145 | assert(atm < natom);
| ~~~~^~~~~~~
layer2/CoordSet.cpp: In member function ‘int CoordSet::extendIndices(int)’:
layer2/CoordSet.cpp:1572:21: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare]
1572 | assert(NAtIndex <= nAtom);
| ~~~~~~~~~^~~~~~~~
layer2/CoordSet.cpp:1573:18: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare]
1573 | if (NAtIndex < nAtom) {
| ~~~~~~~~~^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDot.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMolecule.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/CoordSet.cpp: In function ‘void CoordSetAtomToPDBStrVLA(PyMOLGlobals*, char**, int*, const AtomInfoType*, const float*, int, const PDBInfoRec*, const double*)’:
layer2/CoordSet.cpp:1014:14: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation]
1014 | strncpy(anisoline, "ANISOU", 6);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMap.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule.cpp: In function ‘int ObjectMoleculeFillOpenValences(ObjectMolecule*, int)’:
layer2/ObjectMolecule.cpp:3531:14: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘signed char’ [-Wsign-compare]
3531 | if((nn >= ai->valence) || (!flag))
| ~~~^~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp: In function ‘pymol::Result<> ObjectMoleculeAddBondByIndices(ObjectMolecule*, unsigned int, unsigned int, int)’:
layer2/ObjectMolecule.cpp:4328:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
4328 | if (atm1 >= I->NAtom || atm2 >= I->NAtom) {
| ~~~~~^~~~~~~~~~~
layer2/ObjectMolecule.cpp:4328:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
4328 | if (atm1 >= I->NAtom || atm2 >= I->NAtom) {
| ~~~~~^~~~~~~~~~~
layer2/ObjectMolecule.cpp: In member function ‘bool ObjectMolecule::atomHasAnyCoordinates(size_t) const’:
layer2/ObjectMolecule.cpp:11713:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
11713 | for (size_t i = 0; i < NCSet; ++i) {
| ~~^~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapValidXtal(ObjectMap*, int)’:
layer2/ObjectMap.cpp:133:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
133 | if((state >= 0) && (state < I->State.size())) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapTrim(ObjectMap*, int, float*, float*, int)’:
layer2/ObjectMap.cpp:914:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
914 | } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapDouble(ObjectMap*, int)’:
layer2/ObjectMap.cpp:931:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
931 | } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapHalve(ObjectMap*, int, int)’:
layer2/ObjectMap.cpp:946:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
946 | } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘void ObjectMapRegeneratePoints(ObjectMap*)’:
layer2/ObjectMap.cpp:1189:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1189 | for (i=0; i<om->State.size();i++){
| ~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘PyObject* ObjectMapAllStatesAsPyList(ObjectMap*)’:
layer2/ObjectMap.cpp:1279:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1279 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/RepDot.cpp: In function ‘RepDotDoNew(CoordSet*, cRepDot_t, int)’:
layer2/RepDot.cpp:436:17: warning: ‘vn’ may be used uninitialized [-Wmaybe-uninitialized]
436 | *(vn++) = sp->dot[b][2];
| ~~~~~~~~^~~~~~~~~~~~~~~
layer2/RepDot.cpp:263:14: note: ‘vn’ was declared here
263 | float *v, *vn;
| ^~
layer2/ObjectMap.cpp: In function ‘int ObjectMapAllStatesFromPyList(ObjectMap*, PyObject*)’:
layer2/ObjectMap.cpp:1437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1437 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapNewCopy(PyMOLGlobals*, const ObjectMap*, ObjectMap**, int, int)’:
layer2/ObjectMap.cpp:1509:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1509 | for(state = 0; state < src->State.size(); state++) {
| ~~~~~~^~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:1518:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1518 | if(source_state < src->State.size()) {
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapState* ObjectMapStatePrime(ObjectMap*, int)’:
layer2/ObjectMap.cpp:1535:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
1535 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘void ObjectMapUpdateExtents(ObjectMap*)’:
layer2/ObjectMap.cpp:1548:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1548 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In member function ‘virtual void ObjectMap::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectMap.cpp:1674:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1674 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapCCP4StrToMap(ObjectMap*, char*, int, int, int, int)’:
layer2/ObjectMap.cpp:2297:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2297 | if(bytes < 256 * sizeof(int)) {
| ~~~~~~^~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:2307:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2307 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:2942:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2942 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapXPLORStrToMap(ObjectMap*, char*, int, int)’:
layer2/ObjectMap.cpp:3216:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
3216 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapFLDStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:3437:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
3437 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapBRIXStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:3766:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
3766 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:4172:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
4172 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadCCP4(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int, int)’:
layer2/ObjectMap.cpp:4694:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4694 | if(state < I->State.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapACNTStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:5245:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
5245 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadXPLOR(PyMOLGlobals*, ObjectMap*, const char*, int, int, int)’:
layer2/ObjectMap.cpp:5557:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
5557 | if(state < I->State.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadChemPyBrick(PyMOLGlobals*, ObjectMap*, PyObject*, int, int, int)’:
layer2/ObjectMap.cpp:5711:24: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
5711 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadChemPyMap(PyMOLGlobals*, ObjectMap*, PyObject*, int, int, int)’:
layer2/ObjectMap.cpp:5809:24: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
5809 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer0/Isosurf.h:24,
from layer2/ObjectMap.h:25,
from layer2/ObjectMap.cpp:27:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer2/ObjectMap.cpp:198:30: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
100 | assert(sizeof...(pos) <= n_dim());
| ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer2/ObjectMap.cpp:1605:14: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepEllipsoid.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’
layer2/ObjectMap.cpp:5967:46: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/DistSet.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:21,
from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5,
from layer0/os_numpy.h:8,
from layer2/ObjectMap.cpp:22:
/usr/lib64/python3.11/site-packages/numpy/core/include/numpy/__multiarray_api.h: At global scope:
/usr/lib64/python3.11/site-packages/numpy/core/include/numpy/__multiarray_api.h:1477:1: warning: ‘int _import_array()’ defined but not used [-Wunused-function]
1477 | _import_array(void)
| ^~~~~~~~~~~~~
layer2/DistSet.cpp: In function ‘int DistSetGetLabelVertex(DistSet*, int, float*)’:
layer2/DistSet.cpp:43:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::array<float, 3> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
43 | if (at >= 0 && at < I->LabCoord.size()) {
| ~~~^~~~~~~~~~~~~~~~~~~~
layer2/DistSet.cpp: In member function ‘pymol::Result<std::array<float, 3> > DistSet::getLabelOffset(int) const’:
layer2/DistSet.cpp:59:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<LabPosType>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
59 | if (atm < 0 || atm >= this->LabPos.size()) {
| ~~~~^~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepLabel.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule.cpp: In function ‘ObjectMoleculeMOLStr2CoordSet(PyMOLGlobals*, char const*, AtomInfoType**, char const**) [clone .constprop.0]’:
layer2/ObjectMolecule.cpp:7579:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=]
7579 | " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G)
| ^~ ~~~~~~~
In file included from layer1/Ortho.h:32,
from layer2/ObjectMolecule.cpp:31:
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 34 and 289 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMolecule.cpp:7627:16: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 1023 [-Wstringop-truncation]
7627 | strncpy(atInfo[a].elem, cc, cElemNameLen);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/GadgetSet.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMap.cpp: In function ‘ObjectMapDump(ObjectMap const*, char const*, int, int)’:
layer2/ObjectMap.cpp:5982:24: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=]
5982 | " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G);
| ^~
In file included from /usr/include/stdio.h:906,
from /usr/include/python3.11/Python.h:24,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
In function ‘*__snprintfieee128’,
inlined from ‘ObjectMapDump(ObjectMap const*, char const*, int, int)’ at layer2/ObjectMap.cpp:5981:5:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chkieee128’ output 30 or more bytes (assuming 285) into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp: In member function ‘ObjectMolecule::update()’:
layer2/ObjectMolecule.cpp:10605:82: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=]
10605 | " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n",
| ^~
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 68 and 333 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMolecule.cpp: In function ‘ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, float const*, int, int)’:
layer2/ObjectMolecule.cpp:10731:43: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ^~
10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0);
| ~~~~~~
layer2/ObjectMolecule.cpp:10731:21: note: directive argument in the range [-2147483647, 2147483647]
10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp:10731:14: note: ‘*__sprintfieee128’ output between 78 and 2036 bytes into a destination of size 1024
10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepMesh.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/HydrogenAdder.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer0/Isosurf.h:24,
from layer2/RepMesh.cpp:28:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer2/RepMesh.cpp:970:27: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
100 | assert(sizeof...(pos) <= n_dim());
| ~~~~~~~~~~~~~~~^~~~~~~~~~
layer2/HydrogenAdder.cpp: In function ‘int ObjectMoleculeAddSeleHydrogensRefactored(ObjectMolecule*, int, int)’:
layer2/HydrogenAdder.cpp:283:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
283 | for (unsigned atm = 0; atm < n_atom_old; atm++) {
| ~~~~^~~~~~~~~~~~
layer2/HydrogenAdder.cpp:301:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
301 | for (unsigned atm = 0; atm < n_atom_old; ++atm) {
| ~~~~^~~~~~~~~~~~
layer2/HydrogenAdder.cpp:349:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
349 | for (unsigned idx = 0; idx < cs->NIndex; ++idx) {
| ~~~~^~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’:
layer2/ObjectMap.cpp:4290:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
4290 | " ObjectMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘*__snprintfieee128’,
inlined from ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’ at layer2/ObjectMap.cpp:4289:3:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chkieee128’ output between 14 and 1037 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’:
layer2/ObjectMap.cpp:4290:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
4290 | " ObjectMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘*__snprintfieee128’,
inlined from ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’ at layer2/ObjectMap.cpp:4289:3:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chkieee128’ output between 14 and 1037 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepWireBond.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
layer2/ObjectMap.cpp:2961:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2961 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘*__snprintfieee128’,
inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2960:5,
inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25,
inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chkieee128’ output between 16 and 1039 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
layer2/ObjectMap.cpp:2970:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2970 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘*__snprintfieee128’,
inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2969:5,
inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25,
inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chkieee128’ output between 16 and 1039 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
layer2/ObjectMap.cpp:2976:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2976 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘*__snprintfieee128’,
inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2975:5,
inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25,
inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chkieee128’ output between 16 and 1039 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
layer2/ObjectMap.cpp:3058:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
3058 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘*__snprintfieee128’,
inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:3057:5,
inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25,
inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chkieee128’ output between 16 and 1039 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepNonbonded.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/MovieScene.cpp -o build/temp.linux-ppc64le-cpython-311/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/TypeFace.cpp -o build/temp.linux-ppc64le-cpython-311/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/Sculpt.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer5/TestPyMOL.cpp -o build/temp.linux-ppc64le-cpython-311/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepNonbondedSphere.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In function ‘ObjectMoleculeXYZStr2CoordSet(PyMOLGlobals*, char const*, AtomInfoType**, char const**)’,
inlined from ‘ObjectMoleculeReadStr(PyMOLGlobals*, ObjectMolecule*, char const**, cLoadType_t, int, int, int, int, char*, short, _OVLexicon*)’ at layer2/ObjectMolecule.cpp:8551:43:
layer2/ObjectMolecule.cpp:2898:16: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 1023 [-Wstringop-truncation]
2898 | strncpy(ai->elem, cc, cElemNameLen);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMolecule2.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer5/main.cpp -o build/temp.linux-ppc64le-cpython-311/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepRibbon.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule2.cpp: In function ‘bool ObjectMoleculeConnect(ObjectMolecule*, int&, pymol::vla<BondType>&, CoordSet*, int, int, bool)’:
layer2/ObjectMolecule2.cpp:3750:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
3750 | for (unsigned i = 0; i < cs->NIndex; ++i) {
| ~~^~~~~~~~~~~~
layer2/ObjectMolecule2.cpp: In lambda function:
layer2/ObjectMolecule2.cpp:3779:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
3779 | if (i <= j && !symop)
| ~~^~~~
layer2/ObjectMolecule2.cpp: In function ‘bool ObjectMoleculeConnect(ObjectMolecule*, int&, pymol::vla<BondType>&, CoordSet*, int, int, bool)’:
layer2/ObjectMolecule2.cpp:3884:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
3884 | for (unsigned i = 0; i < cs->NIndex; ++i) {
| ~~^~~~~~~~~~~~
layer2/ObjectMolecule2.cpp:3900:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
3900 | for (unsigned a = 0; a < cs->NTmpBond; ++a) {
| ~~^~~~~~~~~~~~~~
layer2/ObjectMolecule2.cpp:3950:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
3950 | for (unsigned a = 0; a < cs->NTmpLinkBond; ++a) {
| ~~^~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVContext.cpp -o build/temp.linux-ppc64le-cpython-311/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
ov/src/OVContext.cpp: In function ‘void OVContext_Del(OVContext*)’:
ov/src/OVContext.cpp:21:13: warning: variable ‘heap’ set but not used [-Wunused-but-set-variable]
21 | OVHeap *heap = I->heap;
| ^~~~
layer2/RepRibbon.cpp: In function ‘RepRibbonNew(CoordSet*, int)’:
layer2/RepRibbon.cpp:378:15: warning: ‘*_696’ may be used uninitialized [-Wmaybe-uninitialized]
378 | *(v1++) = *(v++); /* first segment */
| ^~~~~~
layer2/RepRibbon.cpp:379:15: warning: ‘MEM[(float *)_696 + 4B]’ may be used uninitialized [-Wmaybe-uninitialized]
379 | *(v1++) = *(v++);
| ^~~~~~
layer2/RepRibbon.cpp:380:15: warning: ‘MEM[(float *)_696 + 8B]’ may be used uninitialized [-Wmaybe-uninitialized]
380 | *(v1++) = *(v++);
| ^~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVHeap.cpp -o build/temp.linux-ppc64le-cpython-311/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVHeapArray.cpp -o build/temp.linux-ppc64le-cpython-311/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVLexicon.cpp -o build/temp.linux-ppc64le-cpython-311/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/SculptCache.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSphere.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVOneToAny.cpp -o build/temp.linux-ppc64le-cpython-311/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/SideChainHelper.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVOneToOne.cpp -o build/temp.linux-ppc64le-cpython-311/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVRandom.cpp -o build/temp.linux-ppc64le-cpython-311/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/ov_utility.cpp -o build/temp.linux-ppc64le-cpython-311/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer1/PyMOLObject.h:26,
from layer2/ObjectMolecule.h:24,
from layer2/SideChainHelper.h:9,
from layer2/SideChainHelper.cpp:10:
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:47:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
436 | int i = *out;
| ^~~~
In file included from layer2/ObjectMolecule.h:25:
layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
505 | V out;
| ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:49:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
436 | int i = *out;
| ^~~~
layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
505 | V out;
| ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:55:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
436 | int i = *out;
| ^~~~
layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
505 | V out;
| ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:57:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
436 | int i = *out;
| ^~~~
layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
505 | V out;
| ^~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/PlugIOManager.cpp -o build/temp.linux-ppc64le-cpython-311/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/VFont.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSphereGenerate.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule2.cpp: In function ‘ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, char const*, char const*, char const*, char const*, char const*, char const*, float, int, float, float, char const*, float const*, int, int, int, int)’:
layer2/ObjectMolecule2.cpp:335:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
335 | " ObjMol: created %s/%s/%s/%s`%d%c/%s\n",
| ^~
In file included from /usr/include/stdio.h:906,
from /usr/include/python3.11/Python.h:24,
from layer0/os_python.h:34,
from layer2/ObjectMolecule2.cpp:24:
In function ‘*__snprintfieee128’,
inlined from ‘ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, char const*, char const*, char const*, char const*, char const*, char const*, float, int, float, float, char const*, float const*, int, int, int, int)’ at layer2/ObjectMolecule2.cpp:334:7:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chkieee128’ output between 26 and 291 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer3/PlugIOManager.cpp: In function ‘ObjectMap* PlugIOManagerLoadVol(PyMOLGlobals*, ObjectMap*, const char*, int, int, const char*)’:
layer3/PlugIOManager.cpp:416:34: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
416 | if(obj->State.size() <= state) {
| ~~~~~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer0/Isosurf.h:24,
from layer2/ObjectMap.h:25,
from layer3/PlugIOManager.h:23,
from layer3/PlugIOManager.cpp:24:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’
layer3/PlugIOManager.cpp:541:21: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
100 | assert(sizeof...(pos) <= n_dim());
| ~~~~~~~~~~~~~~~^~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/AtomIterators.cpp -o build/temp.linux-ppc64le-cpython-311/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSphereImmediate.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMolecule3.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/ObjectMolecule3.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/PlugIOManager.cpp: In function ‘PlugIOManagerLoad’:
layer3/PlugIOManager.cpp:946:65: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=]
946 | " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G);
| ^~
In file included from /usr/include/stdio.h:906,
from /usr/include/python3.11/Python.h:24,
from layer0/os_python.h:34,
from layer3/PlugIOManager.cpp:20:
In function ‘*__snprintfieee128’,
inlined from ‘PlugIOManagerLoad’ at layer3/PlugIOManager.cpp:945:7:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chkieee128’ output between 58 and 313 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer3/AtomIterators.cpp: In member function ‘virtual bool SeleAtomIterator::next()’:
layer3/AtomIterators.cpp:61:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
61 | while ((++a) < I->Table.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer3/AtomIterators.cpp: In member function ‘virtual bool SeleCoordIterator::next()’:
layer3/AtomIterators.cpp:129:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
129 | for (a++; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/RingFinder.cpp -o build/temp.linux-ppc64le-cpython-311/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/CifDataValueFormatter.cpp -o build/temp.linux-ppc64le-cpython-311/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule3.cpp: In function ‘std::vector<int> ObjectMoleculeGetMolMappingVec(const ObjectMolecule&)’:
layer2/ObjectMolecule3.cpp:42:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
42 | for (size_t b = 0; b < objmol.NBond; ++b) {
| ~~^~~~~~~~~~~~~~
layer2/ObjectMolecule3.cpp: In function ‘void ObjectMoleculePBCUnwrap(ObjectMolecule&, bool)’:
layer2/ObjectMolecule3.cpp:151:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
151 | for (unsigned atm = 0; atm != objmol.NAtom; ++atm) {
| ~~~~^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSurface.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Editor.cpp -o build/temp.linux-ppc64le-cpython-311/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/RingFinder.cpp: In member function ‘void AbstractRingFinder::recursion(int, int)’:
layer3/RingFinder.cpp:23:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
23 | } else if (depth < m_indices.size() - 1) {
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Seeker.cpp -o build/temp.linux-ppc64le-cpython-311/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectSlice.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/RepSurface.cpp: In function ‘void RepSurfaceSmoothEdges(RepSurface*)’:
layer2/RepSurface.cpp:4403:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4403 | for (auto j = 0; j < edges[i].size(); j += 3) {
| ~~^~~~~~~~~~~~~~~~~
layer2/RepSurface.cpp:4415:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4415 | for (auto j = 0; j < edges[i].size(); j += 3) {
| ~~^~~~~~~~~~~~~~~~~
layer2/RepSurface.cpp:4426:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4426 | for (auto i = 0; i < unique_edges.size(); i += 2) {
| ~~^~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp: In function ‘pymol::Result<> EditorSelect(PyMOLGlobals*, const char*, const char*, const char*, const char*, int, int, int)’:
layer3/Editor.cpp:776:7: warning: variable ‘result’ set but not used [-Wunused-but-set-variable]
776 | int result = false;
| ^~~~~~
layer2/ObjectSlice.cpp: In function ‘PyObject* ObjectSliceAllStatesAsPyList(ObjectSlice*)’:
layer2/ObjectSlice.cpp:78:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
78 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectSlice.cpp:210:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
210 | for(a = 0; a < State.size(); a++) {
| ~~^~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::update()’:
layer2/ObjectSlice.cpp:633:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
633 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘void ObjectSliceDrag(ObjectSlice*, int, int, float*, float*, float*)’:
layer2/ObjectSlice.cpp:679:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
679 | if(state < I->State.size())
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘int ObjectSliceGetVertex(ObjectSlice*, int, int, float*)’:
layer2/ObjectSlice.cpp:750:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
750 | if(state < I->State.size())
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::render(RenderInfo*)’:
layer2/ObjectSlice.cpp:925:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
925 | if(state < I->State.size())
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp:967:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
967 | if(cur_state >= I->State.size())
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp:981:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
981 | if(state < I->State.size())
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1226 | if(cur_state >= I->State.size())
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘ObjectSliceState* ObjectSliceStateGetActive(ObjectSlice*, int)’:
layer2/ObjectSlice.cpp:1244:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1244 | if(state < I->State.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘ObjectSlice* ObjectSliceFromMap(PyMOLGlobals*, ObjectSlice*, ObjectMap*, int, int)’:
layer2/ObjectSlice.cpp:1285:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
1285 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectSlice.cpp: In function ‘void ObjectSliceRecomputeExtent(ObjectSlice*)’:
layer2/ObjectSlice.cpp:1362:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1362 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Seeker.cpp: In function ‘void SeekerRefresh(PyMOLGlobals*, std::vector<CSeqRow>&)’:
layer3/Seeker.cpp:485:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
485 | for(int b = 0; b < nRow; b++) {
| ~~^~~~~~
layer3/Seeker.cpp: In function ‘void SeekerUpdate(PyMOLGlobals*)’:
layer3/Seeker.cpp:1150:23: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
1150 | if(row->len < min_pad) {
| ~~~~~~~~~^~~~~~~~~
layer3/Seeker.cpp:1186:23: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
1186 | if(row->len < min_pad) {
| ~~~~~~~~~^~~~~~~~~
layer3/Seeker.cpp: In lambda function:
layer3/Seeker.cpp:1248:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
1248 | for(int i = 0; i < str_size; i++){
| ~~^~~~~~~~~~
layer3/Seeker.cpp: In function ‘void SeekerUpdate(PyMOLGlobals*)’:
layer3/Seeker.cpp:1930:27: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
1930 | if(row->ext_len < stop)
| ~~~~~~~~~~~~~^~~~~~
In file included from layer0/vla.h:7,
from layer1/Symmetry.h:26,
from layer1/PyMOLObject.h:27,
from layer1/Seq.h:21,
from layer3/Seeker.cpp:26:
layer3/Seeker.cpp: In function ‘void SeekerFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CSeeker’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer3/Seeker.cpp:1964:3: note: in expansion of macro ‘DeleteP’
1964 | DeleteP(G->Seeker);
| ^~~~~~~
layer3/Editor.cpp: In function ‘EditorDefineExtraPks(PyMOLGlobals*)’:
layer3/Editor.cpp:335:29: warning: ‘%s’ directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=]
335 | sprintf(buffer, "(byres %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:335:12: note: ‘*__sprintfieee128’ output between 9 and 264 bytes into a destination of size 256
335 | sprintf(buffer, "(byres %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:337:31: warning: ‘%s’ directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=]
337 | sprintf(buffer, "(bychain %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:337:12: note: ‘*__sprintfieee128’ output between 11 and 266 bytes into a destination of size 256
337 | sprintf(buffer, "(bychain %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:339:32: warning: ‘%s’ directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=]
339 | sprintf(buffer, "(byobject %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:339:12: note: ‘*__sprintfieee128’ output between 12 and 267 bytes into a destination of size 256
339 | sprintf(buffer, "(byobject %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘ObjectSlice::update()’:
layer2/ObjectSlice.cpp:639:42: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=]
639 | "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSlice.cpp:34:
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 51 and 306 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSlice.cpp:650:39: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=]
650 | " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G);
| ^~
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 28 and 283 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Editor.cpp: In function ‘EditorPrepareDrag(PyMOLGlobals*, pymol::CObject*, int, int, int, int)’:
layer3/Editor.cpp:1933:29: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
1933 | " Editor: grabbing (%s).", name ENDFB(G);
| ^~ ~~~~
In file included from layer1/Ortho.h:32,
from layer1/ButMode.h:20,
from layer3/Editor.cpp:28:
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 22 and 277 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectSurface.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Selector.cpp -o build/temp.linux-ppc64le-cpython-311/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Executive.cpp -o build/temp.linux-ppc64le-cpython-311/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectSurface.cpp: In function ‘PyObject* ObjectSurfaceAllStatesAsPyList(ObjectSurface*)’:
layer2/ObjectSurface.cpp:83:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
83 | for(int a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In function ‘void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)’:
layer2/ObjectSurface.cpp:236:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
236 | if(state < I->State.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In member function ‘virtual void ObjectSurface::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectSurface.cpp:281:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
281 | for(int a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In function ‘int ObjectSurfaceInvalidateMapName(ObjectSurface*, const char*, const char*)’:
layer2/ObjectSurface.cpp:311:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
311 | for(int a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In function ‘ObjectSurface* ObjectSurfaceFromBox(PyMOLGlobals*, ObjectSurface*, ObjectMap*, int, int, float*, float*, float, cIsosurfaceMode, float, pymol::vla<float>&&, cIsosurfaceSide, int)’:
layer2/ObjectSurface.cpp:1029:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
1029 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectSurface.cpp: In function ‘int ObjectSurfaceSetLevel(ObjectSurface*, float, int, int)’:
layer2/ObjectSurface.cpp:1125:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1125 | for(int a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In member function ‘virtual bool SelectorAtomIterator::next()’:
layer3/Selector.cpp:185:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
185 | if ((++a) >= selector->Table.size())
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘bool SelectorIsSelectionDiscrete(PyMOLGlobals*, SelectorID_t, bool)’:
layer3/Selector.cpp:1028:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1028 | for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorClassifyAtoms(PyMOLGlobals*, int, int, ObjectMolecule*)’:
layer3/Selector.cpp:1082:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1082 | while(a < I->Table.size()) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:1106:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1106 | while(a1 < I->Table.size()) {
| ~~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘const char* SelectorGetNameFromIndex(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:1519:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SelectionInfoRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1519 | for(int a = 1; a < I->Info.size(); a++) {
| ~~^~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’:
layer3/Selector.cpp:1653:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1653 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:1680:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1680 | while(a1 < I->Table.size()) {
| ~~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:1874:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1874 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘PyObject* SelectorColorectionGet(PyMOLGlobals*, const char*)’:
layer3/Selector.cpp:2687:18: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2687 | for(b = 0; b < n_used; b++) {
| ~~^~~~~~~~
layer3/Selector.cpp:2703:16: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2703 | for(a = 0; a < n_used; a++) {
| ~~^~~~~~~~
layer3/Selector.cpp:2715:18: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2715 | for(b = 0; b < n_used; b++) {
| ~~^~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorColorectionApply(PyMOLGlobals*, PyObject*, const char*)’:
layer3/Selector.cpp:2763:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
2763 | for(b = 0; b < n_used; b++) { /* update selection indices */
| ~~^~~~~~~~
layer3/Selector.cpp:2768:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2768 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:2772:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
2772 | for(b = 0; b < n_used; b++) {
| ~~^~~~~~~~
layer3/Selector.cpp: In function ‘PyObject* SelectorSecretsAsPyList(PyMOLGlobals*)’:
layer3/Selector.cpp:2873:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SelectionInfoRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2873 | for(int a = 0; a < I->Info.size(); a++) {
| ~~^~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘PyObject* SelectorAsPyList(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:2952:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2952 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCountStates(PyMOLGlobals*, int)’:
layer3/Selector.cpp:3446:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3446 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCheckIntersection(PyMOLGlobals*, int, int)’:
layer3/Selector.cpp:3470:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3470 | for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCountAtoms(PyMOLGlobals*, int, int)’:
layer3/Selector.cpp:3488:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3488 | for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘void SelectorSetDeleteFlagOnSelectionInObject(PyMOLGlobals*, int, ObjectMolecule*, signed char)’:
layer3/Selector.cpp:3503:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3503 | for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int* SelectorGetIndexVLAImpl(PyMOLGlobals*, CSelector*, SelectorID_t)’:
layer3/Selector.cpp:3589:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3589 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘void SelectorLogSele(PyMOLGlobals*, const char*)’:
layer3/Selector.cpp:3648:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3648 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘ObjectMolecule* SelectorGetSingleObjectMolecule(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:3813:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3813 | for (a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘ObjectMolecule* SelectorGetFirstObjectMolecule(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:3843:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3843 | for (a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘ObjectMolecule** SelectorGetObjectMoleculeVLA(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:3867:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3867 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorSubdivide(PyMOLGlobals*, const char*, SelectorID_t, SelectorID_t, SelectorID_t, SelectorID_t, const char*, const char*, int*)’:
layer3/Selector.cpp:4266:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4266 | for(a = 0; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorGetSeleNCSet(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:4570:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4570 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorGetArrayNCSet(PyMOLGlobals*, const sele_array_t&, int)’:
layer3/Selector.cpp:4600:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4600 | for(a = start; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorMapMaskVDW(PyMOLGlobals*, int, ObjectMapState*, float, int)’:
layer3/Selector.cpp:4761:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4761 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorMapGaussian(PyMOLGlobals*, int, ObjectMapState*, float, int, int, int, int, float)’:
layer3/Selector.cpp:5121:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
5121 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:5165:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
5165 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorMapCoulomb(PyMOLGlobals*, int, ObjectMapState*, float, int, int, int, float)’:
layer3/Selector.cpp:5373:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
5373 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCreateObjectMolecule(PyMOLGlobals*, SelectorID_t, const char*, int, int, int, int, int, int, int)’:
layer3/Selector.cpp:6062:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
6062 | if(ob)
| ^~
layer3/Selector.cpp:6066:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
6066 | SelectorUpdateTable(G, source, -1);
| ^~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6077:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6077 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In lambda function:
layer3/Selector.cpp:6103:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6103 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6133:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMolecule*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6133 | for(a = cNDummyModels; a < I->Obj.size(); a++) { /* find bonds wholly contained in the selection */
| ~~^~~~~~~~~~~~~~~
layer3/Selector.cpp:6159:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6159 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6200:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6200 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6224:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6224 | for(a = cNDummyAtoms; a < I->Table.size(); a++) /* any selected atoms in this state? */
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorEmbedSelection(PyMOLGlobals*, const int*, pymol::zstring_view, ObjectMolecule*, int, int)’:
layer3/Selector.cpp:6660:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6660 | for(a = start; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘sele_array_t SelectorSelectFromTagDict(PyMOLGlobals*, const std::unordered_map<int, int>&)’:
layer3/Selector.cpp:6755:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6755 | for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer0/Isosurf.h:24,
from layer2/ObjectMap.h:25,
from layer3/Selector.h:27,
from layer3/Selector.cpp:39:
layer3/Selector.cpp: In function ‘void SelectorUpdateTableSingleObject(PyMOLGlobals*, ObjectMolecule*, int, bool)’:
layer3/Selector.cpp:6997:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6997 | assert(c == I->Table.size());
| ~~^~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘sele_array_t SelectorGetSeleArrayForAtomIndices(CSelector*, ObjectMolecule*, const int*, int, bool)’:
layer3/Selector.cpp:7010:26: warning: comparison of integer expressions of different signedness: ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
7010 | assert(I->Table.size() == cNDummyAtoms + obj->NAtom);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorModulate1(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:7293:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7293 | for (a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7316:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7316 | for(a = 0; ok && a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7379:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7379 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7393:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7393 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7416:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7416 | for(a = 0; ok && a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7457:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7457 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorSelect0(PyMOLGlobals*, EvalElem*)’:
layer3/Selector.cpp:7490:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7490 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7501:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7501 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7506:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7506 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7513:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7513 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7517:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7517 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7521:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7521 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7525:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7525 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7529:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7529 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7538:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7538 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7555:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7555 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7560:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7560 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7565:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7565 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7570:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7570 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7575:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7575 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7580:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7580 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7585:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7585 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7589:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7589 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7593:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7593 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7598:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7598 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7603:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7603 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7610:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7610 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7626:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7626 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7632 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7641:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7641 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7653:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7653 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7673:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7673 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘pymol::Result<> SelectorSelect1(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:8378:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMolecule*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8378 | for(a = cNDummyModels; a < I->Obj.size(); a++)
| ~~^~~~~~~~~~~~~~~
layer3/Selector.cpp:8388:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMolecule*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8388 | else if(model > I->Obj.size())
| ~~~~~~^~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorSelect2(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:8470:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8470 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8474:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8474 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8522:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8522 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8533:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8533 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8544:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8544 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8555:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8555 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8570:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8570 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8581:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8581 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8592:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8592 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8603:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8603 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8618:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8618 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8629:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8629 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8640:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8640 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8651:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8651 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorLogic1(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:9128:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
9128 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:9157:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
9157 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorOperator22(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:9416:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
9416 | for(a = 0; a < table_size; a++) {
| ~~^~~~~~~~~~~~
layer3/Selector.cpp:9438:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
9438 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:9468:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
9468 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:9473:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
9473 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘pymol::Result<std::unique_ptr<int [], std::default_delete<int []> > > SelectorEvaluate(PyMOLGlobals*, std::vector<std::__cxx11::basic_string<char> >&, int, int)’:
layer3/Selector.cpp:9622:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
9622 | while(ok && c < word.size()) {
| ~~^~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘DistSet* SelectorGetDistSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, float, float*)’:
layer3/Selector.cpp:10213:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10213 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘DistSet* SelectorGetAngleSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, int, int, float*, int*)’:
layer3/Selector.cpp:10495:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10495 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:10519:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10519 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘DistSet* SelectorGetDihedralSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, int, int, int, int, float*, int*)’:
layer3/Selector.cpp:10724:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10724 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:10801:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10801 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer3/Selector.cpp:4800:18: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
100 | assert(sizeof...(pos) <= n_dim());
| ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer3/Selector.cpp:5309:20: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer2/ObjectSurface.cpp: In function ‘ObjectSurfaceDump(ObjectSurface*, char const*, int, int)’:
layer2/ObjectSurface.cpp:268:30: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
268 | " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSurface.cpp:35:
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output 34 or more bytes (assuming 289) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveIsosurfaceEtc(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int, int, int)’:
layer3/Executive.cpp:986:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
986 | if(map_state >= mapObj->State.size())
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveIsomeshEtc(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int, int, float)’:
layer3/Executive.cpp:1132:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1132 | if(map_state >= mapObj->State.size())
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveVolume(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int)’:
layer3/Executive.cpp:1305:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1305 | if(map_state >= mapObj->State.size())
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/cassert:44,
from /usr/include/glm/detail/func_exponential.inl:8,
from /usr/include/glm/exponential.hpp:110,
from /usr/include/glm/detail/func_geometric.inl:1,
from /usr/include/glm/geometric.hpp:116,
from /usr/include/glm/detail/func_matrix.inl:1,
from /usr/include/glm/matrix.hpp:161,
from /usr/include/glm/detail/type_mat2x2.inl:1,
from /usr/include/glm/detail/type_mat2x2.hpp:176,
from /usr/include/glm/ext/matrix_double2x2.hpp:5,
from /usr/include/glm/mat2x2.hpp:5,
from /usr/include/glm/glm.hpp:119,
from layer3/Executive.cpp:114:
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSmooth(PyMOLGlobals*, const char*, int, int, int, int, int, int, float, bool)’:
layer3/Executive.cpp:6095:17: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare]
6095 | assert(n_atom == SelectorCountAtoms(G, sele, cStateAll));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:6155:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare]
6155 | for (int c = 0; c < n_atom; ++c) {
| ~~^~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveMapSet(PyMOLGlobals*, const char*, int, const char*, int, int, int, int)’:
layer3/Executive.cpp:6325:34: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
6325 | if(obj->State.size() > max_n_state)
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
layer3/Executive.cpp:6436:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6436 | if(src_state < obj->State.size()) {
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘float ExecutiveRMSPairs(PyMOLGlobals*, const std::vector<SelectorTmp>&, int, bool)’:
layer3/Executive.cpp:11035:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
11035 | for(a = 0; a < pairs; a++) {
| ~~^~~~~~~
layer3/Executive.cpp:11040:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
11040 | if(a < (pairs - 1))
| ~~^~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In member function ‘ObjectSurface::update()’:
layer2/ObjectSurface.cpp:493:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
493 | " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G);
| ^~
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 30 and 285 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveColor(PyMOLGlobals*, const char*, const char*, int, int)’:
layer3/Executive.cpp:12401:7: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable]
12401 | int ok = false;
| ^~
layer3/Executive.cpp: In function ‘void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)’:
layer3/Executive.cpp:14066:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
14066 | for (unsigned idx = 0; idx < cs->NIndex; ++idx) {
| ~~~~^~~~~~~~~~~~
layer3/Executive.cpp:14093:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
14093 | for (unsigned atm = 0; atm < new_obj->NAtom; ++atm) {
| ~~~~^~~~~~~~~~~~~~~~
In file included from layer3/Executive.cpp:51:
layer3/Executive.cpp: In lambda function:
layer0/ListMacros.h:100:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
100 | else \
| ^~~~
layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
141 | ListDetach(List,copy,Link,ElemType); \
| ^~~~~~~~~~
layer3/Executive.cpp:14194:7: note: in expansion of macro ‘ListDelete’
14194 | ListDelete(I->Spec, rec, next, SpecRec); /* NOTE: order N in list length! TO FIX */
| ^~~~~~~~~~
layer0/ListMacros.h:102:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
102 | (Elem)->Link = NULL; \
| ^
layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
141 | ListDetach(List,copy,Link,ElemType); \
| ^~~~~~~~~~
layer3/Executive.cpp:14194:7: note: in expansion of macro ‘ListDelete’
14194 | ListDelete(I->Spec, rec, next, SpecRec); /* NOTE: order N in list length! TO FIX */
| ^~~~~~~~~~
layer3/Executive.cpp: In lambda function:
layer0/ListMacros.h:100:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
100 | else \
| ^~~~
layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
141 | ListDetach(List,copy,Link,ElemType); \
| ^~~~~~~~~~
layer3/Executive.cpp:14206:7: note: in expansion of macro ‘ListDelete’
14206 | ListDelete(I->Spec, rec, next, SpecRec); /* NOTE: order N in list length! TO FIX */
| ^~~~~~~~~~
layer0/ListMacros.h:102:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
102 | (Elem)->Link = NULL; \
| ^
layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
141 | ListDetach(List,copy,Link,ElemType); \
| ^~~~~~~~~~
layer3/Executive.cpp:14206:7: note: in expansion of macro ‘ListDelete’
14206 | ListDelete(I->Spec, rec, next, SpecRec); /* NOTE: order N in list length! TO FIX */
| ^~~~~~~~~~
layer3/Executive.cpp: In member function ‘virtual int CExecutive::click(int, int, int, int)’:
layer3/Executive.cpp:14873:68: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
14873 | if(((panel->is_group) && (((xx) - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:14874:69: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
14874 | ((!panel->is_group) && (((xx) - 1) / DIP2PIXEL(8)) > panel->nest_level)) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In member function ‘virtual int CExecutive::release(int, int, int, int)’:
layer3/Executive.cpp:15162:65: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15162 | (((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:15163:66: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15163 | ((!panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > panel->nest_level))) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In member function ‘virtual int CExecutive::drag(int, int, int)’:
layer3/Executive.cpp:15304:70: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15304 | if(((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:15305:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15305 | ((!panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > panel->nest_level)) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:15340:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15340 | if(!((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1))) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/OOMac.h:22,
from layer3/Executive.cpp:37:
layer3/Executive.cpp: In function ‘void ExecutiveFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CExecutive’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer3/Executive.cpp:16294:3: note: in expansion of macro ‘DeleteP’
16294 | DeleteP(G->Executive);
| ^~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSliceNew(PyMOLGlobals*, const char*, const char*, int, int)’:
layer3/Executive.cpp:16607:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
16607 | if(map_state >= mapObj->State.size())
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from layer3/Executive.h:38,
from layer3/Executive.cpp:38:
layer0/TrackerList.h: In instantiation of ‘pymol::TrackerAdapter<T>::TrackerAdapterIterator<IsConst>::TrackerAdapterIterator(CTracker*, int) [with bool IsConst = false; T = SpecRec]’:
layer0/TrackerList.h:99:29: required from ‘pymol::TrackerAdapter<T>::iterator pymol::TrackerAdapter<T>::begin() [with T = SpecRec; iterator = pymol::TrackerAdapter<SpecRec>::TrackerAdapterIterator<false>]’
layer3/Executive.cpp:202:62: required from here
layer0/TrackerList.h:80:15: warning: ‘pymol::TrackerAdapter<SpecRec>::TrackerAdapterIterator<false>::m_tracker’ will be initialized after [-Wreorder]
80 | CTracker* m_tracker;
| ^~~~~~~~~
layer0/TrackerList.h:79:9: warning: ‘int pymol::TrackerAdapter<SpecRec>::TrackerAdapterIterator<false>::m_iter_id’ [-Wreorder]
79 | int m_iter_id = -1;
| ^~~~~~~~~
layer0/TrackerList.h:35:14: warning: when initialized here [-Wreorder]
35 | explicit TrackerAdapterIterator(CTracker* tracker, int list_id)
| ^~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectVolume.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectVolume.cpp: In function ‘PyObject* ObjectVolumeAllStatesAsPyList(ObjectVolume*)’:
layer2/ObjectVolume.cpp:127:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
127 | for(int a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘int ObjectVolumeAllStatesFromPyList(ObjectVolume*, PyObject*)’:
layer2/ObjectVolume.cpp:248:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
248 | for(int a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘int ObjectVolumeInvalidateMapName(ObjectVolume*, const char*, const char*)’:
layer2/ObjectVolume.cpp:313:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
313 | for(int a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectVolume.cpp:341:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
341 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::update()’:
layer2/ObjectVolume.cpp:402:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
402 | for(int a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp:440:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<float>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
440 | for (i = 0; i < vs->Ramp.size(); i += 5) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::render(RenderInfo*)’:
layer2/ObjectVolume.cpp:759:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
759 | for(a = 0; a < I->State.size(); ++a) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘ObjectVolume* ObjectVolumeFromXtalSym(PyMOLGlobals*, ObjectVolume*, ObjectMap*, CSymmetry*, int, int, float*, float*, float, int, float, float*, int)’:
layer2/ObjectVolume.cpp:1131:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
1131 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectVolume.cpp: In function ‘void ObjectVolumeRecomputeExtent(ObjectVolume*)’:
layer2/ObjectVolume.cpp:1232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1232 | for(int a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer0/Isosurf.h:24,
from layer2/ObjectMap.h:25,
from layer2/ObjectVolume.h:20,
from layer2/ObjectVolume.cpp:29:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = unsigned char; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = unsigned char; SizeTs = {int, int, int}]’
layer2/ObjectVolume.cpp:534:44: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
100 | assert(sizeof...(pos) <= n_dim());
| ~~~~~~~~~~~~~~~^~~~~~~~~~
layer2/ObjectVolume.cpp: At global scope:
layer2/ObjectVolume.cpp:657:15: warning: ‘size_t createPreintegrationTexture(PyMOLGlobals*, const float*, int)’ defined but not used [-Wunused-function]
657 | static size_t createPreintegrationTexture(PyMOLGlobals * G, const float *Table, const int count)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘ObjectVolumeStateGetMapState(ObjectVolumeState*)’:
layer2/ObjectVolume.cpp:74:33: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
74 | "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName
| ^~
In file included from /usr/include/stdio.h:906,
from /usr/include/python3.11/Python.h:24,
from layer0/os_python.h:34,
from layer2/ObjectVolume.cpp:20:
In function ‘*__snprintfieee128’,
inlined from ‘ObjectVolumeStateGetMapState(ObjectVolumeState*)’ at layer2/ObjectVolume.cpp:73:5:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chkieee128’ output between 46 and 301 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepAngle.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘ExecutiveRemoveAtoms(PyMOLGlobals*, char const*, int)’:
layer3/Executive.cpp:9007:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=]
9007 | " Remove: eliminated %d atoms in model \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29:
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 42 and 307 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, char const*, char const*, char const*, int, int, int)’:
layer3/Executive.cpp:11424:28: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11424 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~
11425 | name, nSet, obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11424:17: note: using the range [-2147483648, 2147483647] for directive argument
11424 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output between 42 and 561 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, char const*, int, int, int)’:
layer3/Executive.cpp:11505:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11505 | " Getting: %s for %d bonds in object \"%s\".\n",
| ^~
11506 | name, nSet, obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11505:15: note: using the range [-2147483648, 2147483647] for directive argument
11505 | " Getting: %s for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output between 38 and 557 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveSetBondSetting(PyMOLGlobals*, int, _object*, char const*, char const*, int, int, int)’:
layer3/Executive.cpp:11605:62: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
11605 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output 42 or more bytes (assuming 297) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveUnsetBondSetting(PyMOLGlobals*, int, char const*, char const*, int, int, int)’:
layer3/Executive.cpp:11684:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11684 | " Setting: %s unset for %d bonds in object \"%s\".\n",
| ^~
11685 | name, nSet, rec->obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11684:15: note: using the range [-2147483648, 2147483647] for directive argument
11684 | " Setting: %s unset for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output between 44 and 563 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, char const*, pymol::CObject*, int, int, int)’:
layer3/Executive.cpp:12226:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12226 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12227 | name, value2, obj->Name, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12226:19: note: directive argument in the range [1, 2147483647]
12226 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output between 43 and 1584 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12218:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12218 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12219 | name, value2, obj->Name ENDF(G);
| ~~~~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output between 34 and 1566 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12197:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12197 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~ ~~~~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output between 21 and 1298 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveSetSettingFromString(PyMOLGlobals*, int, char const*, char const*, int, int, int)’:
layer3/Executive.cpp:12129:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12129 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
12130 | name, op.i4, rec->obj->Name ENDF(G);
| ~~~~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output between 42 and 561 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12097:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12097 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~
12098 | name, value2, nObj, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12097:21: note: using the range [-2147483648, 2147483647] for directive argument
12097 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647]
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output between 43 and 1339 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12094:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
| ^~ ~~~~
layer3/Executive.cpp:12094:21: note: using the range [-2147483648, 2147483647] for directive argument
12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output between 34 and 1321 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12161:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12161 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12162 | name, value2, rec->obj->Name, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12161:25: note: directive argument in the range [1, 2147483647]
12161 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output between 43 and 1584 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12153:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12153 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12154 | name, value2, rec->obj->Name ENDF(G);
| ~~~~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output between 34 and 1566 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12057:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12057 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~ ~~~~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output between 21 and 1298 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Selector.cpp: In function ‘SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’:
layer3/Selector.cpp:1722:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=]
1722 | " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n",
| ^~
In file included from /usr/include/stdio.h:906,
from /usr/include/c++/13/cstdio:42,
from /usr/include/c++/13/ext/string_conversions.h:45,
from /usr/include/c++/13/bits/basic_string.h:4072,
from /usr/include/c++/13/string:54,
from layer3/Selector.cpp:20:
In function ‘*__snprintfieee128’,
inlined from ‘SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’ at layer3/Selector.cpp:1721:19:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chkieee128’ output between 59 and 324 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepCartoon.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/RepCartoon.cpp: In function ‘Rep* RepCartoonNew(CoordSet*, int)’:
layer2/RepCartoon.cpp:3731:11: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class CCInOut’; use assignment or value-initialization instead [-Wclass-memaccess]
3731 | memset(car, 0, sizeof(*car) * nAtIndex);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/RepCartoon.cpp:44:7: note: ‘class CCInOut’ declared here
44 | class CCInOut {
| ^~~~~~~
layer3/Executive.cpp: In function ‘ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, CSymmetry const&, bool)’:
layer3/Executive.cpp:5951:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=]
5951 | " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G);
| ^~
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 56 and 311 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5942:46: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
5942 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__,
| ^~
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 84 and 339 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveSpectrum(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, float, float, int, int, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:4764:24: warning: ‘strncpy’ specified bound 8 equals destination size [-Wstringop-truncation]
4764 | strncpy(value_s, raw_ptr, sizeof(value_e));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer2/CoordSet.h:24,
from layer2/RepCartoon.h:21,
from layer2/RepCartoon.cpp:27:
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
inlined from ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’ at layer2/RepCartoon.cpp:337:23:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
436 | int i = *out;
| ^~~~
In file included from layer2/ObjectMolecule.h:25,
from layer2/CoordSet.h:25:
layer2/AtomInfo.h: In function ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
505 | V out;
| ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
inlined from ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’ at layer2/RepCartoon.cpp:338:23:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
436 | int i = *out;
| ^~~~
layer2/AtomInfo.h: In function ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
505 | V out;
| ^~~
layer2/RepCartoon.cpp: In function ‘do_ring(PyMOLGlobals*, nuc_acid_data*, int, int*, ObjectMolecule*, CoordSet*, float, CGO*, int, float, int, int, int, float, float, int*, float*, float)’:
layer2/RepCartoon.cpp:1007:65: warning: ‘i’ may be used uninitialized [-Wmaybe-uninitialized]
1007 | float ladder_alpha = 1.0f - AtomSettingGetWD(G, ai_i[i], cSetting_cartoon_transparency, 1.0f - alpha);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/RepCartoon.cpp:461:11: note: ‘i’ was declared here
461 | int i;
| ^
In file included from layer1/Symmetry.h:26,
from layer2/CoordSet.h:22:
In member function ‘pymol::vla<AtomInfoType>::operator+<int>(int)AtomInfoType*’,
inlined from ‘GenerateRepCartoonProcessCylindricalHelices(PyMOLGlobals*, ObjectMolecule*, CoordSet*, CGO*, CExtrude*, int, int*, float*, float*, float*, CCInOut const*, int*, float*, int, int, float, float)’ at layer2/RepCartoon.cpp:1739:34,
inlined from ‘GenerateRepCartoonCGO(CoordSet*, ObjectMolecule*, nuc_acid_data*, short, float*, int, float*, float*, float*, CCInOut const*, int*, int*, int*, float*, float)’ at layer2/RepCartoon.cpp:2553:53:
layer0/vla.h:118:60: warning: ‘atom_index2’ may be used uninitialized [-Wmaybe-uninitialized]
118 | template <typename S> T* operator+(S i) { return m_vla + i; }
| ^
layer2/RepCartoon.cpp: In function ‘GenerateRepCartoonCGO(CoordSet*, ObjectMolecule*, nuc_acid_data*, short, float*, int, float*, float*, float*, CCInOut const*, int*, int*, int*, float*, float)’:
layer2/RepCartoon.cpp:1593:20: note: ‘atom_index2’ was declared here
1593 | int atom_index1, atom_index2, *s,
| ^~~~~~~~~~~
layer3/Executive.cpp: In function ‘ExecutiveBond(PyMOLGlobals*, char const*, char const*, int, int, int, pymol::zstring_view)’:
layer3/Executive.cpp:9358:53: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=]
9358 | " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name
| ^~
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 35 and 300 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9371:67: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=]
9371 | " Valence: %d bond valences adjusted in model \"%s\".\n", cnt,
| ^~
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 49 and 314 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9383:59: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=]
9383 | " Unbond: %d bonds removed from model \"%s\".\n",
| ^~
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 41 and 306 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
In file included from layer0/Map.h:24,
from layer1/Basis.h:20,
from layer1/Ray.h:24,
from layer1/Rep.h:21,
from layer2/RepCartoon.h:20:
In function ‘pymol::subtract3<float, float, float>(float const*, float const*, float*)void’,
inlined from ‘RepCartoonComputeRoundHelices(nuc_acid_data*, int, int const*, ss_t const*, float const*, float const*)’ at layer2/RepCartoon.cpp:3281:21,
inlined from ‘RepCartoonNew(CoordSet*, int)’ at layer2/RepCartoon.cpp:3792:36:
layer0/Vector.h:365:17: warning: ‘MEM[(float *)&t2]’ may be used uninitialized [-Wmaybe-uninitialized]
365 | v3[0] = v1[0] - v2[0];
| ~~~~~~^~~~~
layer2/RepCartoon.cpp: In function ‘RepCartoonNew(CoordSet*, int)’:
layer2/RepCartoon.cpp:3206:23: note: ‘MEM[(float *)&t2]’ was declared here
3206 | float t0[3], t1[3], t2[3];
| ^~
In function ‘pymol::subtract3<float, float, float>(float const*, float const*, float*)void’,
inlined from ‘RepCartoonComputeRoundHelices(nuc_acid_data*, int, int const*, ss_t const*, float const*, float const*)’ at layer2/RepCartoon.cpp:3281:21,
inlined from ‘RepCartoonNew(CoordSet*, int)’ at layer2/RepCartoon.cpp:3792:36:
layer0/Vector.h:366:17: warning: ‘MEM[(float *)&t2 + 4B]’ may be used uninitialized [-Wmaybe-uninitialized]
366 | v3[1] = v1[1] - v2[1];
| ~~~~~~^~~~~
layer2/RepCartoon.cpp: In function ‘RepCartoonNew(CoordSet*, int)’:
layer2/RepCartoon.cpp:3206:23: note: ‘MEM[(float *)&t2 + 4B]’ was declared here
3206 | float t0[3], t1[3], t2[3];
| ^~
In function ‘pymol::subtract3<float, float, float>(float const*, float const*, float*)void’,
inlined from ‘RepCartoonComputeRoundHelices(nuc_acid_data*, int, int const*, ss_t const*, float const*, float const*)’ at layer2/RepCartoon.cpp:3281:21,
inlined from ‘RepCartoonNew(CoordSet*, int)’ at layer2/RepCartoon.cpp:3792:36:
layer0/Vector.h:367:17: warning: ‘MEM[(float *)&t2 + 8B]’ may be used uninitialized [-Wmaybe-uninitialized]
367 | v3[2] = v1[2] - v2[2];
| ~~~~~~^~~~~
layer2/RepCartoon.cpp: In function ‘RepCartoonNew(CoordSet*, int)’:
layer2/RepCartoon.cpp:3206:23: note: ‘MEM[(float *)&t2 + 8B]’ was declared here
3206 | float t0[3], t1[3], t2[3];
| ^~
layer3/Executive.cpp: In function ‘ExecutiveSetSetting(PyMOLGlobals*, int, _object*, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:11877:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
11877 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output 42 or more bytes (assuming 297) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11788:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11788 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~
11789 | name, value, nObj, state + 1 ENDF(G);
| ~~~~~
layer3/Executive.cpp:11788:21: note: using the range [-2147483648, 2147483647] for directive argument
11788 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647]
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output 43 or more bytes (assuming 1075) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11785:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
| ^~ ~~~~~
layer3/Executive.cpp:11785:21: note: using the range [-2147483648, 2147483647] for directive argument
11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output 34 or more bytes (assuming 1057) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11909:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11909 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
11910 | name, value, rec->obj->Name, state + 1 ENDF(G);
| ~~~~~
layer3/Executive.cpp:11909:25: note: directive argument in the range [1, 2147483647]
11909 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output 43 or more bytes (assuming 1330) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11902:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11902 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
11903 | name, value, rec->obj->Name ENDF(G);
| ~~~~~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output 34 or more bytes (assuming 1312) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11744:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11744 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
| ^~ ~~~~~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output 21 or more bytes (assuming 1044) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:12338:68: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=]
12338 | " Setting: %s unset for %d atoms in object \"%s\".\n",
| ^~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output 44 or more bytes (assuming 299) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12360:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12360 | " Setting: %s unset in object \"%s\", state %d.\n",
| ^~
layer3/Executive.cpp:12360:25: note: directive argument in the range [1, 2147483647]
12360 | " Setting: %s unset in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output 41 or more bytes (assuming 305) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12354:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12354 | " Setting: %s unset in object \"%s\".\n",
| ^~
layer0/Feedback.h:282:53: note: ‘*__snprintfieee128’ output 32 or more bytes (assuming 287) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepCylBond.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)’:
layer3/Executive.cpp:14447:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
14447 | " Executive-Warning: name \"%s\" collides with a selection language keyword.\n",
| ^~
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 73 and 328 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14442:36: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
14442 | " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name
| ^~
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 61 and 316 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14473:11: warning: ‘strcpy’ offset 0 is out of the bounds [0, 0] [-Warray-bounds=]
14473 | strcpy(rec->name, obj->Name);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/SelectorTmp.cpp -o build/temp.linux-ppc64le-cpython-311/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘ExecutiveCopy(PyMOLGlobals*, char const*, char const*, int)’:
layer3/Executive.cpp:9665:25: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
9665 | " Executive: object %s created.\n", oDst->Name ENDFB(G);
| ^~
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 30 and 285 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In member function ‘CExecutive::drag(int, int, int)’:
layer3/Executive.cpp:15471:55: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=]
15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
| ^~
15472 | order_input, (location == -2) ? "upper" : "current");
| ~~~~~~~~~~~
layer3/Executive.cpp:15471:26: note: ‘*__sprintfieee128’ output between 32 and 1057 bytes into a destination of size 1024
15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
15472 | order_input, (location == -2) ? "upper" : "current");
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDihedral.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/SpecRec.cpp -o build/temp.linux-ppc64le-cpython-311/layer3/SpecRec.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)’:
layer3/Executive.cpp:2259:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
2259 | " Executive: adding '%s' to group '%s'.\n", rec.name, rec.group_name
| ^~
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 36 and 546 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)’:
layer3/Executive.cpp:3523:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=]
3523 | " Warning: Invalid characters in '%s' have been replaced or stripped\n",
| ^~
3524 | name ENDFB(G);
| ~~~~
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 67 and 322 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/SpecRecSpecial.cpp -o build/temp.linux-ppc64le-cpython-311/layer3/SpecRecSpecial.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’:
layer3/Executive.cpp:5070:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=]
5070 | " Executive: skipping unrecognized object \"%s\" of type %d.\n",
| ^~
In function ‘ExecutiveSetNamedEntries(PyMOLGlobals*, _object*, int, int, int)’,
inlined from ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’ at layer3/Executive.cpp:5696:38:
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 56 and 321 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’:
layer3/Executive.cpp:5095:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=]
5095 | "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G);
| ^~
In function ‘ExecutiveSetNamedEntries(PyMOLGlobals*, _object*, int, int, int)’,
inlined from ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’ at layer3/Executive.cpp:5696:38:
layer0/Feedback.h:274:15: note: ‘*__snprintfieee128’ output between 49 and 304 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDistDash.cpp -o build/temp.linux-ppc64le-cpython-311/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer4/Cmd.cpp -o build/temp.linux-ppc64le-cpython-311/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer4/Cmd.cpp: In function ‘PyObject* CmdPushUndo(PyObject*, PyObject*)’:
layer4/Cmd.cpp:2216:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
2216 | if(ok)
| ^~
layer4/Cmd.cpp:2218:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
2218 | if(s0[0])
| ^~
layer4/Cmd.cpp: In function ‘PyObject* CmdGetMinMax(PyObject*, PyObject*)’:
layer4/Cmd.cpp:4469:7: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable]
4469 | int ok = false;
| ^~
In file included from layer4/Cmd.cpp:77:
layer1/PConv.h: In instantiation of ‘PyObject* PConvToPyObject(const std::array<_Tp, _Nm>&) [with T = float; long unsigned int N = 3; PyObject = _object]’:
layer4/Cmd.cpp:380:27: required from ‘PyObject* APIResult(PyMOLGlobals*, pymol::Result<T>&) [with T = std::array<float, 3>; PyObject = _object]’
layer4/Cmd.cpp:4034:19: required from here
layer1/PConv.h:259:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
259 | for (int i = 0; i < N; ++i) {
| ~~^~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/ExecutivePython.cpp -o build/temp.linux-ppc64le-cpython-311/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/ExecutivePython.cpp: In function ‘pymol::Result<> ExecutiveSetRawAlignment(PyMOLGlobals*, pymol::zstring_view, PyObject*, pymol::zstring_view, int, int)’:
layer3/ExecutivePython.cpp:171:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare]
171 | for(size_t c = 0; c < n_cols; ++c) {
| ~~^~~~~~~~
layer3/ExecutivePython.cpp:180:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare]
180 | for(size_t i = 0; i < n_idx; ++i) {
| ~~^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/MaeExportHelpers.cpp -o build/temp.linux-ppc64le-cpython-311/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer2/AtomInfo.h:23,
from layer3/MaeExportHelpers.h:11,
from layer3/MaeExportHelpers.cpp:11:
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
inlined from ‘SettingGet<bool>(PyMOLGlobals*, SeleCoordIterator const&, int)bool’ at layer3/MaeExportHelpers.cpp:24:26,
inlined from ‘MaeExportGetAtomStyle(PyMOLGlobals*, SeleCoordIterator const&)’ at layer3/MaeExportHelpers.cpp:73:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
436 | int i = *out;
| ^~~~
layer2/AtomInfo.h: In function ‘MaeExportGetAtomStyle(PyMOLGlobals*, SeleCoordIterator const&)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
505 | V out;
| ^~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/MoleculeExporter.cpp -o build/temp.linux-ppc64le-cpython-311/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer4/Menu.cpp -o build/temp.linux-ppc64le-cpython-311/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer4/PopUp.cpp -o build/temp.linux-ppc64le-cpython-311/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer0/OOMac.h:22,
from layer4/PopUp.cpp:23:
layer4/PopUp.cpp: In function ‘void PopUpFree(Block*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CPopUp’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer4/PopUp.cpp:401:3: note: in expansion of macro ‘DeleteP’
401 | DeleteP(I);
| ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer5/PyMOL.cpp -o build/temp.linux-ppc64le-cpython-311/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer5/PyMOL.cpp: In function ‘PyMOLreturn_status Loader(CPyMOL*, const char*, const char*, int, const char*, const char*, int, int, int, int, int, int)’:
layer5/PyMOL.cpp:1546:27: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘long unsigned int’ [-Wsign-compare]
1546 | if((stop - start) >= sizeof(WordType))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from layer5/PyMOL.cpp:23:
layer5/PyMOL.cpp: In function ‘void PyMOL_Stop(CPyMOL*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CMovie’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer5/PyMOL.cpp:1987:3: note: in expansion of macro ‘DeleteP’
1987 | DeleteP(G->Movie);
| ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-ppc64le-cpython-311/build/generated/ShaderText.o build/temp.linux-ppc64le-cpython-311/contrib/mmtf-c/mmtf_parser.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-ppc64le-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-ppc64le-cpython-311/layer0/Block.o build/temp.linux-ppc64le-cpython-311/layer0/CarveHelper.o build/temp.linux-ppc64le-cpython-311/layer0/ContourSurf.o build/temp.linux-ppc64le-cpython-311/layer0/Crystal.o build/temp.linux-ppc64le-cpython-311/layer0/Deferred.o build/temp.linux-ppc64le-cpython-311/layer0/Err.o build/temp.linux-ppc64le-cpython-311/layer0/Feedback.o build/temp.linux-ppc64le-cpython-311/layer0/Field.o build/temp.linux-ppc64le-cpython-311/layer0/File.o build/temp.linux-ppc64le-cpython-311/layer0/GenericBuffer.o build/temp.linux-ppc64le-cpython-311/layer0/GraphicsUtil.o build/temp.linux-ppc64le-cpython-311/layer0/Isosurf.o build/temp.linux-ppc64le-cpython-311/layer0/Map.o build/temp.linux-ppc64le-cpython-311/layer0/Match.o build/temp.linux-ppc64le-cpython-311/layer0/Matrix.o build/temp.linux-ppc64le-cpython-311/layer0/MemoryDebug.o build/temp.linux-ppc64le-cpython-311/layer0/MemoryUsage.o build/temp.linux-ppc64le-cpython-311/layer0/MyPNG.o build/temp.linux-ppc64le-cpython-311/layer0/Parse.o build/temp.linux-ppc64le-cpython-311/layer0/Pixmap.o build/temp.linux-ppc64le-cpython-311/layer0/PostProcess.o build/temp.linux-ppc64le-cpython-311/layer0/ShaderMgr.o build/temp.linux-ppc64le-cpython-311/layer0/ShaderPrg.o build/temp.linux-ppc64le-cpython-311/layer0/Sphere.o build/temp.linux-ppc64le-cpython-311/layer0/Tetsurf.o build/temp.linux-ppc64le-cpython-311/layer0/Texture.o build/temp.linux-ppc64le-cpython-311/layer0/Tracker.o build/temp.linux-ppc64le-cpython-311/layer0/Triangle.o build/temp.linux-ppc64le-cpython-311/layer0/Util.o build/temp.linux-ppc64le-cpython-311/layer0/Util2.o build/temp.linux-ppc64le-cpython-311/layer0/Vector.o build/temp.linux-ppc64le-cpython-311/layer0/Word.o build/temp.linux-ppc64le-cpython-311/layer0/ccealignmodule.o build/temp.linux-ppc64le-cpython-311/layer0/marching_cubes.o build/temp.linux-ppc64le-cpython-311/layer0/os_gl.o build/temp.linux-ppc64le-cpython-311/layer1/Basis.o build/temp.linux-ppc64le-cpython-311/layer1/ButMode.o build/temp.linux-ppc64le-cpython-311/layer1/CGO.o build/temp.linux-ppc64le-cpython-311/layer1/COLLADA.o build/temp.linux-ppc64le-cpython-311/layer1/Character.o build/temp.linux-ppc64le-cpython-311/layer1/Color.o build/temp.linux-ppc64le-cpython-311/layer1/Control.o build/temp.linux-ppc64le-cpython-311/layer1/Extrude.o build/temp.linux-ppc64le-cpython-311/layer1/Font.o build/temp.linux-ppc64le-cpython-311/layer1/FontGLUT.o build/temp.linux-ppc64le-cpython-311/layer1/FontGLUT8x13.o build/temp.linux-ppc64le-cpython-311/layer1/FontGLUT9x15.o build/temp.linux-ppc64le-cpython-311/layer1/FontGLUTHel10.o build/temp.linux-ppc64le-cpython-311/layer1/FontGLUTHel12.o build/temp.linux-ppc64le-cpython-311/layer1/FontGLUTHel18.o build/temp.linux-ppc64le-cpython-311/layer1/FontType.o build/temp.linux-ppc64le-cpython-311/layer1/Movie.o build/temp.linux-ppc64le-cpython-311/layer1/Ortho.o build/temp.linux-ppc64le-cpython-311/layer1/P.o build/temp.linux-ppc64le-cpython-311/layer1/PConv.o build/temp.linux-ppc64le-cpython-311/layer1/Picking.o build/temp.linux-ppc64le-cpython-311/layer1/Pop.o build/temp.linux-ppc64le-cpython-311/layer1/PyMOLObject.o build/temp.linux-ppc64le-cpython-311/layer1/Ray.o build/temp.linux-ppc64le-cpython-311/layer1/Rep.o build/temp.linux-ppc64le-cpython-311/layer1/Scene.o build/temp.linux-ppc64le-cpython-311/layer1/SceneMouse.o build/temp.linux-ppc64le-cpython-311/layer1/ScenePicking.o build/temp.linux-ppc64le-cpython-311/layer1/SceneRay.o build/temp.linux-ppc64le-cpython-311/layer1/SceneRender.o build/temp.linux-ppc64le-cpython-311/layer1/ScrollBar.o build/temp.linux-ppc64le-cpython-311/layer1/Seq.o build/temp.linux-ppc64le-cpython-311/layer1/Setting.o build/temp.linux-ppc64le-cpython-311/layer1/Shaker.o build/temp.linux-ppc64le-cpython-311/layer1/SymOp.o build/temp.linux-ppc64le-cpython-311/layer1/SymOpPConv.o build/temp.linux-ppc64le-cpython-311/layer1/SymOpTools.o build/temp.linux-ppc64le-cpython-311/layer1/Symmetry.o build/temp.linux-ppc64le-cpython-311/layer1/Text.o build/temp.linux-ppc64le-cpython-311/layer1/TypeFace.o build/temp.linux-ppc64le-cpython-311/layer1/View.o build/temp.linux-ppc64le-cpython-311/layer1/Wizard.o build/temp.linux-ppc64le-cpython-311/layer2/AssemblyHelpers.o build/temp.linux-ppc64le-cpython-311/layer2/AtomInfo.o build/temp.linux-ppc64le-cpython-311/layer2/AtomInfoHistory.o build/temp.linux-ppc64le-cpython-311/layer2/BondTypeHistory.o build/temp.linux-ppc64le-cpython-311/layer2/CifFile.o build/temp.linux-ppc64le-cpython-311/layer2/CifMoleculeReader.o build/temp.linux-ppc64le-cpython-311/layer2/CoordSet.o build/temp.linux-ppc64le-cpython-311/layer2/DistSet.o build/temp.linux-ppc64le-cpython-311/layer2/GadgetSet.o build/temp.linux-ppc64le-cpython-311/layer2/HydrogenAdder.o build/temp.linux-ppc64le-cpython-311/layer2/MmodTyping.o build/temp.linux-ppc64le-cpython-311/layer2/MmtfMoleculeReader.o build/temp.linux-ppc64le-cpython-311/layer2/Mol2Typing.o build/temp.linux-ppc64le-cpython-311/layer2/MolV3000.o build/temp.linux-ppc64le-cpython-311/layer2/ObjectAlignment.o build/temp.linux-ppc64le-cpython-311/layer2/ObjectCGO.o build/temp.linux-ppc64le-cpython-311/layer2/ObjectCallback.o build/temp.linux-ppc64le-cpython-311/layer2/ObjectDist.o build/temp.linux-ppc64le-cpython-311/layer2/ObjectGadget.o build/temp.linux-ppc64le-cpython-311/layer2/ObjectGadgetRamp.o build/temp.linux-ppc64le-cpython-311/layer2/ObjectGroup.o build/temp.linux-ppc64le-cpython-311/layer2/ObjectMap.o build/temp.linux-ppc64le-cpython-311/layer2/ObjectMesh.o build/temp.linux-ppc64le-cpython-311/layer2/ObjectMolecule.o build/temp.linux-ppc64le-cpython-311/layer2/ObjectMolecule2.o build/temp.linux-ppc64le-cpython-311/layer2/ObjectMolecule3.o build/temp.linux-ppc64le-cpython-311/layer2/ObjectSlice.o build/temp.linux-ppc64le-cpython-311/layer2/ObjectSurface.o build/temp.linux-ppc64le-cpython-311/layer2/ObjectVolume.o build/temp.linux-ppc64le-cpython-311/layer2/RepAngle.o build/temp.linux-ppc64le-cpython-311/layer2/RepCartoon.o build/temp.linux-ppc64le-cpython-311/layer2/RepCylBond.o build/temp.linux-ppc64le-cpython-311/layer2/RepDihedral.o build/temp.linux-ppc64le-cpython-311/layer2/RepDistDash.o build/temp.linux-ppc64le-cpython-311/layer2/RepDistLabel.o build/temp.linux-ppc64le-cpython-311/layer2/RepDot.o build/temp.linux-ppc64le-cpython-311/layer2/RepEllipsoid.o build/temp.linux-ppc64le-cpython-311/layer2/RepLabel.o build/temp.linux-ppc64le-cpython-311/layer2/RepMesh.o build/temp.linux-ppc64le-cpython-311/layer2/RepNonbonded.o build/temp.linux-ppc64le-cpython-311/layer2/RepNonbondedSphere.o build/temp.linux-ppc64le-cpython-311/layer2/RepRibbon.o build/temp.linux-ppc64le-cpython-311/layer2/RepSphere.o build/temp.linux-ppc64le-cpython-311/layer2/RepSphereGenerate.o build/temp.linux-ppc64le-cpython-311/layer2/RepSphereImmediate.o build/temp.linux-ppc64le-cpython-311/layer2/RepSurface.o build/temp.linux-ppc64le-cpython-311/layer2/RepWireBond.o build/temp.linux-ppc64le-cpython-311/layer2/Sculpt.o build/temp.linux-ppc64le-cpython-311/layer2/SculptCache.o build/temp.linux-ppc64le-cpython-311/layer2/SideChainHelper.o build/temp.linux-ppc64le-cpython-311/layer2/VFont.o build/temp.linux-ppc64le-cpython-311/layer3/AtomIterators.o build/temp.linux-ppc64le-cpython-311/layer3/CifDataValueFormatter.o build/temp.linux-ppc64le-cpython-311/layer3/Editor.o build/temp.linux-ppc64le-cpython-311/layer3/Executive.o build/temp.linux-ppc64le-cpython-311/layer3/ExecutivePython.o build/temp.linux-ppc64le-cpython-311/layer3/MaeExportHelpers.o build/temp.linux-ppc64le-cpython-311/layer3/MoleculeExporter.o build/temp.linux-ppc64le-cpython-311/layer3/MovieScene.o build/temp.linux-ppc64le-cpython-311/layer3/PlugIOManager.o build/temp.linux-ppc64le-cpython-311/layer3/RingFinder.o build/temp.linux-ppc64le-cpython-311/layer3/Seeker.o build/temp.linux-ppc64le-cpython-311/layer3/Selector.o build/temp.linux-ppc64le-cpython-311/layer3/SelectorTmp.o build/temp.linux-ppc64le-cpython-311/layer3/SpecRec.o build/temp.linux-ppc64le-cpython-311/layer3/SpecRecSpecial.o build/temp.linux-ppc64le-cpython-311/layer4/Cmd.o build/temp.linux-ppc64le-cpython-311/layer4/Menu.o build/temp.linux-ppc64le-cpython-311/layer4/PopUp.o build/temp.linux-ppc64le-cpython-311/layer5/PyMOL.o build/temp.linux-ppc64le-cpython-311/layer5/TestPyMOL.o build/temp.linux-ppc64le-cpython-311/layer5/main.o build/temp.linux-ppc64le-cpython-311/ov/src/OVContext.o build/temp.linux-ppc64le-cpython-311/ov/src/OVHeap.o build/temp.linux-ppc64le-cpython-311/ov/src/OVHeapArray.o build/temp.linux-ppc64le-cpython-311/ov/src/OVLexicon.o build/temp.linux-ppc64le-cpython-311/ov/src/OVOneToAny.o build/temp.linux-ppc64le-cpython-311/ov/src/OVOneToOne.o build/temp.linux-ppc64le-cpython-311/ov/src/OVRandom.o build/temp.linux-ppc64le-cpython-311/ov/src/ov_utility.o -L/usr/lib64 -L/usr/lib -L/usr/lib64 -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o build/lib.linux-ppc64le-cpython-311/pymol/_cmd.cpython-311-powerpc64le-linux-gnu.so -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:62:16: warning: type ‘struct parm’ violates the C++ One Definition Rule [-Wodr]
62 | typedef struct parm {
| ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:59:16: note: a different type is defined in another translation unit
59 | typedef struct parm {
| ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:63:8: note: the first difference of corresponding definitions is field ‘title’
63 | char title[85];
| ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:60:17: note: a field with different name is defined in another translation unit
60 | char ititl[81];
| ^
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:33:3: warning: type ‘struct parmdata’ violates the C++ One Definition Rule [-Wodr]
33 | } parmdata;
| ^
contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:32:3: note: a different type is defined in another translation unit
32 | } parmdata;
| ^
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:28:15: note: the first difference of corresponding definitions is field ‘prm’
28 | parmstruct *prm;
| ^
contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:28:13: note: a field with different name is defined in another translation unit
28 | ReadPARM *rp;
| ^
layer0/Isosurf.cpp:47:16: warning: type ‘struct PointType’ violates the C++ One Definition Rule [-Wodr]
47 | typedef struct PointType {
| ^
layer0/Tetsurf.cpp:46:3: note: a different type is defined in another translation unit
46 | } PointType;
| ^
layer0/Isosurf.cpp:49:7: note: the first difference of corresponding definitions is field ‘NLink’
49 | int NLink;
| ^
layer0/Tetsurf.cpp:43:9: note: a field with different name is defined in another translation unit
43 | float Normal[3];
| ^
ov/src/OVOneToAny.cpp:15:3: warning: type ‘struct up_element’ violates the C++ One Definition Rule [-Wodr]
15 | } up_element;
| ^
ov/src/OVOneToOne.cpp:15:3: note: a different type is defined in another translation unit
15 | } up_element;
| ^
ov/src/OVOneToOne.cpp:14:25: note: the first difference of corresponding definitions is field ‘reverse_next’
14 | ov_size forward_next, reverse_next;
| ^
ov/src/OVOneToOne.cpp:15:3: note: a type with different number of fields is defined in another translation unit
15 | } up_element;
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘recreate_command_line’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
1334 | line[0] = '\0';
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by ‘malloc’
1333 | line = (char *) malloc (sizeof(char) * len);
| ^
layer3/Executive.cpp: In function ‘ExecutiveManageObject’:
layer3/Executive.cpp:14473:11: warning: ‘strcpy’ writing between 1 and 256 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]
14473 | strcpy(rec->name, obj->Name);
| ^
lto1: note: destination object is likely at address zero
building 'chempy.champ._champ' extension
creating build/temp.linux-ppc64le-cpython-311/contrib/champ
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/champ.c -o build/temp.linux-ppc64le-cpython-311/contrib/champ/champ.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/champ_module.c -o build/temp.linux-ppc64le-cpython-311/contrib/champ/champ_module.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/chiral.c -o build/temp.linux-ppc64le-cpython-311/contrib/champ/chiral.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/err2.c -o build/temp.linux-ppc64le-cpython-311/contrib/champ/err2.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/feedback2.c -o build/temp.linux-ppc64le-cpython-311/contrib/champ/feedback2.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/list.c -o build/temp.linux-ppc64le-cpython-311/contrib/champ/list.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/os_memory.c -o build/temp.linux-ppc64le-cpython-311/contrib/champ/os_memory.o
contrib/champ/os_memory.c: In function ‘OSMemoryZero’:
contrib/champ/os_memory.c:55:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
55 | while(count&&(((int)p)&mask)) {
| ^
contrib/champ/os_memory.c: In function ‘OSMemoryHashAdd’:
contrib/champ/os_memory.c:137:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
137 | hash=(int)rec;
| ^
contrib/champ/os_memory.c: In function ‘OSMemoryHashRemove’:
contrib/champ/os_memory.c:150:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
150 | hash=(int)rec;
| ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/sort.c -o build/temp.linux-ppc64le-cpython-311/contrib/champ/sort.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/strblock.c -o build/temp.linux-ppc64le-cpython-311/contrib/champ/strblock.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/vla.c -o build/temp.linux-ppc64le-cpython-311/contrib/champ/vla.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-ppc64le-cpython-311/contrib/champ/champ.o build/temp.linux-ppc64le-cpython-311/contrib/champ/champ_module.o build/temp.linux-ppc64le-cpython-311/contrib/champ/chiral.o build/temp.linux-ppc64le-cpython-311/contrib/champ/err2.o build/temp.linux-ppc64le-cpython-311/contrib/champ/feedback2.o build/temp.linux-ppc64le-cpython-311/contrib/champ/list.o build/temp.linux-ppc64le-cpython-311/contrib/champ/os_memory.o build/temp.linux-ppc64le-cpython-311/contrib/champ/sort.o build/temp.linux-ppc64le-cpython-311/contrib/champ/strblock.o build/temp.linux-ppc64le-cpython-311/contrib/champ/vla.o -L/usr/lib64 -o build/lib.linux-ppc64le-cpython-311/chempy/champ/_champ.cpython-311-powerpc64le-linux-gnu.so
Exception ignored in: <function Pool.__del__ at 0x7fffa2b60040>
Traceback (most recent call last):
File "/usr/lib64/python3.11/multiprocessing/pool.py", line 271, in __del__
File "/usr/lib64/python3.11/multiprocessing/queues.py", line 377, in put
File "/usr/lib64/python3.11/multiprocessing/connection.py", line 199, in send_bytes
File "/usr/lib64/python3.11/multiprocessing/connection.py", line 399, in _send_bytes
AttributeError: 'NoneType' object has no attribute 'pack'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.ALtMnw
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le
++ dirname /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pymol-open-source-2.5.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le --prefix /usr --use-msgpackc=c++11 --use-openmp=yes --pymol-path=/usr/lib64/python3.11/site-packages/pymol
running install
running install_lib
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-ppc64le-cpython-311/chempy/bmin/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-ppc64le-cpython-311/chempy/bmin/commands.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-ppc64le-cpython-311/chempy/bmin/realtime.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-ppc64le-cpython-311/chempy/bmin/state.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-ppc64le-cpython-311/chempy/bmin/util.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/bmin
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-ppc64le-cpython-311/chempy/champ/_champ.cpython-311-powerpc64le-linux-gnu.so -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-ppc64le-cpython-311/chempy/champ/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-ppc64le-cpython-311/chempy/champ/amber99.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-ppc64le-cpython-311/chempy/champ/assign.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-ppc64le-cpython-311/chempy/champ/formal_charges.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/champ
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/fast
copying build/lib.linux-ppc64le-cpython-311/chempy/fast/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/fast
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/fragments
copying build/lib.linux-ppc64le-cpython-311/chempy/fragments/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/fragments
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/mmtf
copying build/lib.linux-ppc64le-cpython-311/chempy/mmtf/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/mmtf
copying build/lib.linux-ppc64le-cpython-311/chempy/mmtf/io.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/mmtf
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-ppc64le-cpython-311/chempy/tinker/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-ppc64le-cpython-311/chempy/tinker/amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-ppc64le-cpython-311/chempy/tinker/keyword.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-ppc64le-cpython-311/chempy/tinker/realtime.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-ppc64le-cpython-311/chempy/tinker/state.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-ppc64le-cpython-311/chempy/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/arc.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/bond_amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/bond_mmff.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/bonds.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/brick.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/cc1.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/charge.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/cif.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/cpv.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/dictdb.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/gamess1.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/gms.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/hetatm.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/io.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/lst.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/mae.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/map.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/mass.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/mmd.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/models.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/mol.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/mol2.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/neighbor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/pdb.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/pkl.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/place.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/protein.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/protein_amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/protein_amber99.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/protein_mmff.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/protein_residues.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/sdf.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/solvate.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/water_amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/water_residues.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-ppc64le-cpython-311/chempy/xyz.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/askpartial.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/change_confirm.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/colors.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/create_shortcut.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/fetch.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/help_shortcut.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/load_aln.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/load_mae.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/load_map.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/load_mtz.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/load_traj.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/movieexport.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/pluginitem.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/pluginmanager.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/png.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/props.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/render.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/save_molecule.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/save_object.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/shortcut_menu.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/forms/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/syntax/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/syntax/pml.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/syntax/pmlparser.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/syntax/python.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/TextEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/advanced_settings_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/builder.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/file_dialogs.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/keymapping.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/mimic_pmg_tk.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/mimic_tk.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/properties_dialog.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/pymol_gl_widget.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/pymol_qt_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/shortcut_menu_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-ppc64le-cpython-311/pmg_qt/volume.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/skins
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/skins/demo
copying build/lib.linux-ppc64le-cpython-311/pmg_tk/skins/demo/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/skins/demo
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal
copying build/lib.linux-ppc64le-cpython-311/pmg_tk/skins/normal/ModalWindow.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal
copying build/lib.linux-ppc64le-cpython-311/pmg_tk/skins/normal/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal
copying build/lib.linux-ppc64le-cpython-311/pmg_tk/skins/normal/builder.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal
copying build/lib.linux-ppc64le-cpython-311/pmg_tk/skins/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/skins
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/startup
copying build/lib.linux-ppc64le-cpython-311/pmg_tk/startup/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/startup
copying build/lib.linux-ppc64le-cpython-311/pmg_tk/ColorEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-ppc64le-cpython-311/pmg_tk/Demo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-ppc64le-cpython-311/pmg_tk/PyMOLMapLoad.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-ppc64le-cpython-311/pmg_tk/SetEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-ppc64le-cpython-311/pmg_tk/Setting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-ppc64le-cpython-311/pmg_tk/TextEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-ppc64le-cpython-311/pmg_tk/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-ppc64le-cpython-311/pmg_tk/volume.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-ppc64le-cpython-311/pmg_tk/PMGApp.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/_cmd.cpython-311-powerpc64le-linux-gnu.so -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/Qt
copying build/lib.linux-ppc64le-cpython-311/pymol/Qt/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/Qt
copying build/lib.linux-ppc64le-cpython-311/pymol/Qt/utils.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/Qt
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-ppc64le-cpython-311/pymol/plugins/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-ppc64le-cpython-311/pymol/plugins/installation.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-ppc64le-cpython-311/pymol/plugins/legacysupport.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-ppc64le-cpython-311/pymol/plugins/managergui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-ppc64le-cpython-311/pymol/plugins/managergui_qt.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-ppc64le-cpython-311/pymol/plugins/repository.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/plugins
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/stereochemistry
copying build/lib.linux-ppc64le-cpython-311/pymol/stereochemistry/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/stereochemistry
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/annotation.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/appearance.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/benchmark.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/box.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/charge.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/cleanup.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/command.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/demo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/density.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/distance.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/dragging.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/filter.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/label.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/measurement.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/message.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/mutagenesis.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/nucmutagenesis.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/openvr.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/pair_fit.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/pseudoatom.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/renaming.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/sculpting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/security.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/stereodemo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/wizard/toggle.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-ppc64le-cpython-311/pymol/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/__main__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/api.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/callback.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/cgo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/checking.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/cmd.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/colorprinting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/colorramping.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/commanding.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/completing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/computing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/constants.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/constants_palette.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/controlling.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/creating.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/diagnosing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/editing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/editor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/experimenting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/exporting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/externing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/feedingback.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/fitting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/headering.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/helping.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/importing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/internal.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/invocation.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/keyboard.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/keywords.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/lazyio.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/locking.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/menu.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/monitoring.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/morphing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/movie.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/moving.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/mpeg_encode.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/parser.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/parsing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/povray.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/preset.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/pymolhttpd.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/querying.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/rpc.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/save_shortcut.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/selecting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/selector.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/seqalign.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/setting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/shortcut.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/shortcut_dict.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/shortcut_manager.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/util.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/vfont.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/viewing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/wizarding.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/xray.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-ppc64le-cpython-311/pymol/xwin.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol2
copying build/lib.linux-ppc64le-cpython-311/pymol2/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol2
copying build/lib.linux-ppc64le-cpython-311/pymol2/cmd2.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol2
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/bmin/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/bmin/commands.py to commands.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/bmin/realtime.py to realtime.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/bmin/state.py to state.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/bmin/util.py to util.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/champ/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/champ/amber99.py to amber99.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/champ/assign.py to assign.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/champ/formal_charges.py to formal_charges.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/fast/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/fragments/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/mmtf/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/mmtf/io.py to io.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/tinker/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/tinker/amber.py to amber.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/tinker/keyword.py to keyword.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/tinker/realtime.py to realtime.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/tinker/state.py to state.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/arc.py to arc.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/bond_amber.py to bond_amber.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/bond_mmff.py to bond_mmff.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/bonds.py to bonds.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/brick.py to brick.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/cc1.py to cc1.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/charge.py to charge.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/cif.py to cif.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/cpv.py to cpv.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/dictdb.py to dictdb.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/gamess1.py to gamess1.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/gms.py to gms.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/hetatm.py to hetatm.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/io.py to io.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/lst.py to lst.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/mae.py to mae.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/map.py to map.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/mass.py to mass.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/mmd.py to mmd.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/models.py to models.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/mol.py to mol.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/mol2.py to mol2.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/neighbor.py to neighbor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/pdb.py to pdb.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/pkl.py to pkl.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/place.py to place.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/protein.py to protein.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/protein_amber.py to protein_amber.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/protein_amber99.py to protein_amber99.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/protein_mmff.py to protein_mmff.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/protein_residues.py to protein_residues.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/sdf.py to sdf.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/solvate.py to solvate.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/water_amber.py to water_amber.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/water_residues.py to water_residues.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/xyz.py to xyz.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/forms/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/syntax/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/syntax/pml.py to pml.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/syntax/python.py to python.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/TextEditor.py to TextEditor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/builder.py to builder.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/keymapping.py to keymapping.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/shortcut_menu_gui.py to shortcut_menu_gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_qt/volume.py to volume.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal/builder.py to builder.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/skins/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/startup/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/Demo.py to Demo.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/SetEditor.py to SetEditor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/Setting.py to Setting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/TextEditor.py to TextEditor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/volume.py to volume.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pmg_tk/PMGApp.py to PMGApp.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/Qt/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/Qt/utils.py to utils.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/plugins/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/plugins/installation.py to installation.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/plugins/managergui.py to managergui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/plugins/repository.py to repository.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/stereochemistry/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/annotation.py to annotation.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/appearance.py to appearance.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/benchmark.py to benchmark.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/box.py to box.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/charge.py to charge.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/cleanup.py to cleanup.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/command.py to command.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/demo.py to demo.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/density.py to density.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/distance.py to distance.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/dragging.py to dragging.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/filter.py to filter.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/label.py to label.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/measurement.py to measurement.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/message.py to message.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/openvr.py to openvr.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/renaming.py to renaming.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/sculpting.py to sculpting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/security.py to security.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizard/toggle.py to toggle.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/__main__.py to __main__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/_gui.py to _gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/api.py to api.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/callback.py to callback.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/cgo.py to cgo.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/checking.py to checking.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/cmd.py to cmd.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/colorprinting.py to colorprinting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/colorramping.py to colorramping.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/commanding.py to commanding.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/completing.py to completing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/computing.py to computing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/constants.py to constants.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/constants_palette.py to constants_palette.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/controlling.py to controlling.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/creating.py to creating.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/diagnosing.py to diagnosing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/editing.py to editing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/editor.py to editor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/experimenting.py to experimenting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/exporting.py to exporting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/externing.py to externing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/feedingback.py to feedingback.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/fitting.py to fitting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/gui.py to gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/headering.py to headering.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/helping.py to helping.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/importing.py to importing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/internal.py to internal.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/invocation.py to invocation.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/keyboard.py to keyboard.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/keywords.py to keywords.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/lazyio.py to lazyio.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/locking.py to locking.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/menu.py to menu.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/monitoring.py to monitoring.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/morphing.py to morphing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/movie.py to movie.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/moving.py to moving.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/mpeg_encode.py to mpeg_encode.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/parser.py to parser.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/parsing.py to parsing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/povray.py to povray.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/preset.py to preset.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/querying.py to querying.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/rpc.py to rpc.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/save_shortcut.py to save_shortcut.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/selecting.py to selecting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/selector.py to selector.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/seqalign.py to seqalign.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/setting.py to setting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/shortcut.py to shortcut.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/shortcut_dict.py to shortcut_dict.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/shortcut_manager.py to shortcut_manager.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/util.py to util.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/vfont.py to vfont.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/viewing.py to viewing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/wizarding.py to wizarding.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/xray.py to xray.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/xwin.py to xwin.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol2/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol2/cmd2.py to cmd2.cpython-311.pyc
writing byte-compilation script '/tmp/tmp1elbg_s7.py'
/usr/bin/python3 /tmp/tmp1elbg_s7.py
removing /tmp/tmp1elbg_s7.py
running install_egg_info
running egg_info
creating pymol.egg-info
writing pymol.egg-info/PKG-INFO
writing dependency_links to pymol.egg-info/dependency_links.txt
writing top-level names to pymol.egg-info/top_level.txt
writing manifest file 'pymol.egg-info/SOURCES.txt'
/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py:643: SetuptoolsDeprecationWarning: Custom 'build_py' does not implement 'get_data_files_without_manifest'.
Please extend command classes from setuptools instead of distutils.
warnings.warn(
reading manifest file 'pymol.egg-info/SOURCES.txt'
adding license file 'LICENSE'
adding license file 'AUTHORS'
writing manifest file 'pymol.egg-info/SOURCES.txt'
Copying pymol.egg-info to /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol-2.5.0-py3.11.egg-info
copying LICENSE -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol
copying data -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/data
copying test -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/test
copying examples -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/examples
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/bin
Exception ignored in: <function Pool.__del__ at 0x7fff85ce0040>
Traceback (most recent call last):
File "/usr/lib64/python3.11/multiprocessing/pool.py", line 271, in __del__
File "/usr/lib64/python3.11/multiprocessing/queues.py", line 377, in put
File "/usr/lib64/python3.11/multiprocessing/connection.py", line 199, in send_bytes
File "/usr/lib64/python3.11/multiprocessing/connection.py", line 399, in _send_bytes
AttributeError: 'NoneType' object has no attribute 'pack'
+ rm -rfv /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/bin/__pycache__
+ echo '#!/bin/sh'
+ echo 'export PYMOL_PATH=/usr/lib64/python3.11/site-packages/pymol'
+ echo 'exec /usr/bin/python3 /usr/lib64/python3.11/site-packages/pymol/__init__.py "$@"'
+ cp -a data examples test /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/examples/devel/link_demo.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/examples/devel/particle01.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/examples/devel/particle02.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/test/inp/B03.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/test/inp/B05.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/test/inp/B11.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/test/ref/T01.log
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/pymol_path/examples/devel/link_demo.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/pymol_path/examples/devel/particle01.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/pymol_path/examples/devel/particle02.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/pymol_path/test/inp/B03.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/pymol_path/test/inp/B05.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/pymol_path/test/inp/B11.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/pymol_path/test/ref/T01.log
+ mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/bin
+ install -p -m 755 pymol /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/bin/
+ desktop-file-install --vendor= --dir=/builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/share/applications /builddir/build/SOURCES/pymol.desktop
+ mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/share/pixmaps
+ install -p -m 644 /builddir/build/SOURCES/pymol.png /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/share/pixmaps/
+ mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/share/metainfo
+ install -p -m 644 /builddir/build/SOURCES/pymol.appdata.xml /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/share/metainfo/
+ appstream-util validate-relax --nonet /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le//usr/share/metainfo/pymol.appdata.xml
/builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le//usr/share/metainfo/pymol.appdata.xml: OK
+ /usr/bin/find-debuginfo -j5 --strict-build-id -m -i --build-id-seed 2.5.0-5.fc38 --unique-debug-suffix -2.5.0-5.fc38.ppc64le --unique-debug-src-base pymol-2.5.0-5.fc38.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/pymol-open-source-2.5.0
extracting debug info from /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/chempy/champ/_champ.cpython-311-powerpc64le-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11/site-packages/pymol/_cmd.cpython-311-powerpc64le-linux-gnu.so
original debug info size: 59264kB, size after compression: 45760kB
/usr/bin/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
51230 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/src/debug/pymol-2.5.0-5.fc38.ppc64le/layer3/MaeExportHelpers.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/pymol-2.5.0-5.fc38.ppc64le/layer3/MaeExportHelpers.cpp is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/pymol-2.5.0-5.fc38.ppc64le/layer0/GraphicsUtil.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/pymol-2.5.0-5.fc38.ppc64le/layer0/GraphicsUtil.cpp is executable but has no shebang, removing executable bit
mangling shebang in /usr/bin/pymol from /bin/sh to #!/usr/bin/sh
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
Bytecompiling .py files below /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib/debug/usr/lib64/python3.11 using python3.11
Bytecompiling .py files below /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/lib64/python3.11 using python3.11
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: pymol-2.5.0-5.fc38.ppc64le
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.2lmVno
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-2.5.0
+ DOCDIR=/builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/share/doc/pymol
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/share/doc/pymol
+ cp -pr AUTHORS /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/share/doc/pymol
+ cp -pr DEVELOPERS /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/share/doc/pymol
+ cp -pr README.md /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/share/doc/pymol
+ cp -pr ChangeLog /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/share/doc/pymol
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.3nXLCK
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-2.5.0
+ LICENSEDIR=/builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/share/licenses/pymol
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/share/licenses/pymol
+ cp -pr LICENSE /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le/usr/share/licenses/pymol
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: PyMOL(ppc-64) = 0:2.5.0-5.fc38 application() application(pymol.desktop) metainfo() metainfo(pymol.appdata.xml) pymol = 2.5.0-5.fc38 pymol(ppc-64) = 2.5.0-5.fc38 python3.11dist(pymol) = 2.5 python3dist(pymol) = 2.5
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/sh ld64.so.2()(64bit) ld64.so.2(GLIBC_2.23)(64bit) libGL.so.1()(64bit) libGLEW.so.2.2()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libfreetype.so.6()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.32)(64bit) libm.so.6(GLIBC_2.35)(64bit) libnetcdf.so.19()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.3)(64bit) python(abi) = 3.11 rtld(GNU_HASH)
Processing files: pymol-debugsource-2.5.0-5.fc38.ppc64le
Provides: pymol-debugsource = 2.5.0-5.fc38 pymol-debugsource(ppc-64) = 2.5.0-5.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: pymol-debuginfo-2.5.0-5.fc38.ppc64le
Provides: debuginfo(build-id) = 05dacee017b3cfe18d9dc07204abc105a2d2ff25 debuginfo(build-id) = 5656b725bcce2d8bab5b4116e54352d3092e50d7 pymol-debuginfo = 2.5.0-5.fc38 pymol-debuginfo(ppc-64) = 2.5.0-5.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: pymol-debugsource(ppc-64) = 2.5.0-5.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le
Wrote: /builddir/build/RPMS/pymol-2.5.0-5.fc38.ppc64le.rpm
Wrote: /builddir/build/RPMS/pymol-debugsource-2.5.0-5.fc38.ppc64le.rpm
Wrote: /builddir/build/RPMS/pymol-debuginfo-2.5.0-5.fc38.ppc64le.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.izjmBS
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-2.5.0
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.ppc64le
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.1Fr1Q3
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf pymol-open-source-2.5.0 pymol-open-source-2.5.0.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild pymol-2.5.0-5.fc38.src.rpm
Finish: build phase for pymol-2.5.0-5.fc38.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-ppc64le-1672073286.329146/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-ppc64le-1672073286.329146/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-ppc64le-1672073286.329146/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/pymol-2.5.0-5.fc38.src.rpm) Config(child) 4 minutes 12 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool